Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c28d' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7989575-fedora-41-ppc64le --chroot fedora-41-ppc64le Version: 0.73 PID: 7312 Logging PID: 7313 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7989575, 'buildroot_pkgs': [], 'chroot': 'fedora-41-ppc64le', 'enable_net': False, 'fedora_review': False, 'git_hash': 'ee255563984fcb72a27985f21524dd27d5aa80ad', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.10.1:pr:3/ProDy', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'ProDy', 'package_version': '2.4.1-7', 'project_dirname': 'python3-scipy-1.10.1:pr:3', 'project_name': 'python3-scipy-1.10.1', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/python3-scipy-1.10.1/fedora-41-ppc64le/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/python3-scipy-1.10.1--https://src.fedoraproject.org/user/msuchy', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/msuchy', 'tags': [], 'task_id': '7989575-fedora-41-ppc64le', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.10.1:pr:3/ProDy /var/lib/copr-rpmbuild/workspace/workdir-9cs46183/ProDy --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.10.1:pr:3/ProDy', '/var/lib/copr-rpmbuild/workspace/workdir-9cs46183/ProDy', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-9cs46183/ProDy'... Running: git checkout ee255563984fcb72a27985f21524dd27d5aa80ad -- cmd: ['git', 'checkout', 'ee255563984fcb72a27985f21524dd27d5aa80ad', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-9cs46183/ProDy rc: 0 stdout: stderr: Note: switching to 'ee255563984fcb72a27985f21524dd27d5aa80ad'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at ee25556 automatic import of ProDy Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-9cs46183/ProDy rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading ProDy-2.4.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o ProDy-2.4.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/python3-scipy-1.10.1:pr:3/ProDy/ProDy-2.4.1.tar.gz/md5/ed3fa7549c21d8c68ed832b970952fe4/ProDy-2.4.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Dload Upload Total Spent Left Speed 100 25.9M 100 25.9M 0 0 9056k 0 0:00:02 0:00:02 --:--:-- 9055k INFO: Reading stdout from command: md5sum ProDy-2.4.1.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-9cs46183/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-9cs46183/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725633340.569456 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-9cs46183/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-9cs46183/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725633340.569456 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-9cs46183/ProDy/ProDy.spec) Config(fedora-41-ppc64le) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-ppc64le-bootstrap-1725633340.569456/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:41 INFO: Pulling image: registry.fedoraproject.org/fedora:41 INFO: Copy content of container registry.fedoraproject.org/fedora:41 to /var/lib/mock/fedora-41-ppc64le-bootstrap-1725633340.569456/root INFO: Checking that registry.fedoraproject.org/fedora:41 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:41 with podman image mount INFO: image registry.fedoraproject.org/fedora:41 as /var/lib/containers/storage/overlay/9fa792a508d5b1b2a1164efd7f7c019513241a30b1bd932d3bb607e77040c420/merged INFO: umounting image registry.fedoraproject.org/fedora:41 (/var/lib/containers/storage/overlay/9fa792a508d5b1b2a1164efd7f7c019513241a30b1bd932d3bb607e77040c420/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-ppc64le-1725633340.569456/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-6.fc41.ppc64le rpm-sequoia-1.7.0-2.fc41.ppc64le dnf5-5.2.5.0-2.fc41.ppc64le dnf5-plugins-5.2.5.0-2.fc41.ppc64le Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 47.1 KiB/s | 8.1 KiB | 00m00s fedora 100% | 7.2 MiB/s | 33.2 MiB | 00m05s Copr repository 100% | 1.6 MiB/s | 261.9 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 37.5 MiB/s | 14.2 MiB | 00m00s Repositories loaded. 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.5 MiB debugedit ppc64le 5.0-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 499.1 KiB dwz ppc64le 0.15-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 450.8 KiB ed ppc64le 1.20.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 282.8 KiB efi-srpm-macros noarch 5-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils ppc64le 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.3 MiB elfutils-debuginfod-client ppc64le 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 396.5 KiB elfutils-default-yama-scope noarch 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf ppc64le 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB elfutils-libs ppc64le 0.191-8.fc41 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lz4-libs ppc64le 1.10.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 325.2 KiB mpfr ppc64le 4.2.1-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 976.9 KiB ncurses-base noarch 6.5-2.20240629.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.3 KiB ncurses-libs ppc64le 6.5-2.20240629.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB ocaml-srpm-macros noarch 10-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B openldap ppc64le 2.6.8-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB openssl-libs ppc64le 1:3.2.2-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.6 MiB p11-kit ppc64le 0.25.5-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.1 MiB p11-kit-trust ppc64le 0.25.5-3.fc41 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 390.6 KiB rpm-libs ppc64le 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB rpm-sequoia ppc64le 1.7.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.9 MiB rust-srpm-macros noarch 26.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs ppc64le 3.46.1-1.fc41 fedora 2.0 MiB systemd-libs ppc64le 256.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB util-linux-core ppc64le 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.2 MiB xxhash-libs ppc64le 0.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 211.9 KiB xz-libs ppc64le 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 330.1 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip ppc64le 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB zlib-ng-compat ppc64le 2.1.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 261.7 KiB zstd ppc64le 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 154 packages Total size of inbound packages is 56 MiB. Need to download 56 MiB. After this operation 325 MiB will be used (install 325 MiB, remove 0 B). [ 1/154] bzip2-0:1.0.8-19.fc41.ppc64le 100% | 643.2 KiB/s | 53.4 KiB | 00m00s [ 2/154] bash-0:5.2.32-2.fc42.ppc64le 100% | 15.1 MiB/s | 1.9 MiB | 00m00s [ 3/154] cpio-0:2.15-2.fc41.ppc64le 100% | 6.8 MiB/s | 292.9 KiB | 00m00s [ 4/154] coreutils-0:9.5-9.fc42.ppc64l 100% | 9.6 MiB/s | 1.3 MiB | 00m00s [ 5/154] fedora-release-common-0:42-0. 100% | 1.2 MiB/s | 23.0 KiB | 00m00s [ 6/154] diffutils-0:3.10-8.fc41.ppc64 100% | 14.8 MiB/s | 409.3 KiB | 00m00s [ 7/154] findutils-1:4.10.0-4.fc41.ppc 100% | 24.6 MiB/s | 579.3 KiB | 00m00s [ 8/154] gawk-0:5.3.0-4.fc41.ppc64le 100% | 35.3 MiB/s | 1.1 MiB | 00m00s [ 9/154] glibc-minimal-langpack-0:2.40 100% | 4.5 MiB/s | 120.8 KiB | 00m00s [ 10/154] grep-0:3.11-9.fc41.ppc64le 100% | 12.2 MiB/s | 299.4 KiB | 00m00s [ 11/154] gzip-0:1.13-2.fc41.ppc64le 100% | 8.2 MiB/s | 168.1 KiB | 00m00s [ 12/154] patch-0:2.7.6-25.fc41.ppc64le 100% | 7.3 MiB/s | 142.1 KiB | 00m00s [ 13/154] info-0:7.1-3.fc41.ppc64le 100% | 8.5 MiB/s | 201.1 KiB | 00m00s [ 14/154] redhat-rpm-config-0:294-1.fc4 100% | 3.7 MiB/s | 75.5 KiB | 00m00s [ 15/154] rpm-build-0:4.19.93-1.fc42.pp 100% | 3.8 MiB/s | 77.9 KiB | 00m00s [ 16/154] sed-0:4.9-3.fc41.ppc64le 100% | 14.6 MiB/s | 314.8 KiB | 00m00s [ 17/154] unzip-0:6.0-64.fc41.ppc64le 100% | 8.1 MiB/s | 191.1 KiB | 00m00s [ 18/154] tar-2:1.35-4.fc41.ppc64le 100% | 25.9 MiB/s | 874.3 KiB | 00m00s [ 19/154] shadow-utils-2:4.15.1-9.fc41. 100% | 30.5 MiB/s | 1.3 MiB | 00m00s [ 20/154] which-0:2.21-42.fc41.ppc64le 100% | 2.2 MiB/s | 42.9 KiB | 00m00s [ 21/154] util-linux-0:2.40.2-8.fc42.pp 100% | 35.6 MiB/s | 1.2 MiB | 00m00s [ 22/154] xz-1:5.6.2-2.fc41.ppc64le 100% | 18.1 MiB/s | 462.1 KiB | 00m00s [ 23/154] fedora-repos-0:42-0.1.noarch 100% | 539.4 KiB/s | 9.2 KiB | 00m00s [ 24/154] coreutils-common-0:9.5-9.fc42 100% | 38.8 MiB/s | 2.1 MiB | 00m00s [ 25/154] glibc-common-0:2.40.9000-1.fc 100% | 12.7 MiB/s | 417.0 KiB | 00m00s [ 26/154] glibc-0:2.40.9000-1.fc42.ppc6 100% | 52.6 MiB/s | 3.3 MiB | 00m00s [ 27/154] libblkid-0:2.40.2-8.fc42.ppc6 100% | 5.3 MiB/s | 141.6 KiB | 00m00s [ 28/154] rpm-0:4.19.93-1.fc42.ppc64le 100% | 14.2 MiB/s | 524.4 KiB | 00m00s [ 29/154] libfdisk-0:2.40.2-8.fc42.ppc6 100% | 7.5 MiB/s | 175.7 KiB | 00m00s [ 30/154] libmount-0:2.40.2-8.fc42.ppc6 100% | 8.7 MiB/s | 177.8 KiB | 00m00s [ 31/154] libsmartcols-0:2.40.2-8.fc42. 100% | 6.0 MiB/s | 109.9 KiB | 00m00s [ 32/154] libuuid-0:2.40.2-8.fc42.ppc64 100% | 1.7 MiB/s | 30.5 KiB | 00m00s [ 33/154] util-linux-core-0:2.40.2-8.fc 100% | 25.1 MiB/s | 565.1 KiB | 00m00s [ 34/154] fedora-gpg-keys-0:42-0.1.noar 100% | 6.3 MiB/s | 123.3 KiB | 00m00s [ 35/154] fedora-repos-rawhide-0:42-0.1 100% | 485.7 KiB/s | 8.7 KiB | 00m00s [ 36/154] rpm-build-libs-0:4.19.93-1.fc 100% | 4.4 MiB/s | 107.6 KiB | 00m00s [ 37/154] rpm-libs-0:4.19.93-1.fc42.ppc 100% | 8.9 MiB/s | 354.0 KiB | 00m00s [ 38/154] glibc-gconv-extra-0:2.40.9000 100% | 39.1 MiB/s | 2.0 MiB | 00m00s [ 39/154] xz-libs-1:5.6.2-2.fc41.ppc64l 100% | 5.3 MiB/s | 124.8 KiB | 00m00s [ 40/154] libselinux-0:3.7-5.fc41.ppc64 100% | 3.0 MiB/s | 100.2 KiB | 00m00s [ 41/154] libxcrypt-0:4.4.36-7.fc41.ppc 100% | 5.3 MiB/s | 130.3 KiB | 00m00s [ 42/154] ncurses-libs-0:6.5-2.20240629 100% | 14.8 MiB/s | 378.3 KiB | 00m00s [ 43/154] audit-libs-0:4.0.2-1.fc41.ppc 100% | 7.0 MiB/s | 142.5 KiB | 00m00s [ 44/154] authselect-libs-0:1.5.0-7.fc4 100% | 7.6 MiB/s | 209.5 KiB | 00m00s [ 45/154] systemd-libs-0:256.5-1.fc42.p 100% | 21.7 MiB/s | 778.6 KiB | 00m00s [ 46/154] libcap-ng-0:0.8.5-3.fc41.ppc6 100% | 1.9 MiB/s | 33.7 KiB | 00m00s [ 47/154] librtas-0:2.0.6-2.fc41.ppc64l 100% | 4.0 MiB/s | 81.3 KiB | 00m00s [ 48/154] pam-0:1.6.1-6.fc42.ppc64le 100% | 21.1 MiB/s | 562.6 KiB | 00m00s [ 49/154] pam-libs-0:1.6.1-6.fc42.ppc64 100% | 2.1 MiB/s | 63.3 KiB | 00m00s [ 50/154] zlib-ng-compat-0:2.1.7-2.fc41 100% | 3.9 MiB/s | 79.3 KiB | 00m00s [ 51/154] readline-0:8.2-11.fc42.ppc64l 100% | 6.8 MiB/s | 230.4 KiB | 00m00s [ 52/154] bzip2-libs-0:1.0.8-19.fc41.pp 100% | 2.4 MiB/s | 46.7 KiB | 00m00s [ 53/154] libacl-0:2.3.2-2.fc41.ppc64le 100% | 1.6 MiB/s | 27.3 KiB | 00m00s [ 54/154] libgcc-0:14.2.1-1.fc42.ppc64l 100% | 5.8 MiB/s | 112.3 KiB | 00m00s [ 55/154] libcap-0:2.70-4.fc41.ppc64le 100% | 4.0 MiB/s | 93.4 KiB | 00m00s [ 56/154] libattr-0:2.5.2-4.fc41.ppc64l 100% | 995.1 KiB/s | 18.9 KiB | 00m00s [ 57/154] libeconf-0:0.6.2-3.fc41.ppc64 100% | 1.4 MiB/s | 36.2 KiB | 00m00s [ 58/154] libsemanage-0:3.7-2.fc41.ppc6 100% | 3.7 MiB/s | 128.1 KiB | 00m00s [ 59/154] setup-0:2.15.0-5.fc41.noarch 100% | 4.8 MiB/s | 148.3 KiB | 00m00s [ 60/154] libzstd-0:1.5.6-2.fc41.ppc64l 100% | 14.3 MiB/s | 336.8 KiB | 00m00s [ 61/154] popt-0:1.19-7.fc41.ppc64le 100% | 2.6 MiB/s | 63.9 KiB | 00m00s [ 62/154] lua-libs-0:5.4.6-6.fc41.ppc64 100% | 4.7 MiB/s | 148.1 KiB | 00m00s [ 63/154] rpm-sequoia-0:1.7.0-2.fc41.pp 100% | 26.6 MiB/s | 981.0 KiB | 00m00s [ 64/154] elfutils-libelf-0:0.191-8.fc4 100% | 7.8 MiB/s | 216.7 KiB | 00m00s [ 65/154] elfutils-libs-0:0.191-8.fc41. 100% | 13.7 MiB/s | 295.3 KiB | 00m00s [ 66/154] file-libs-0:5.45-7.fc41.ppc64 100% | 26.1 MiB/s | 774.4 KiB | 00m00s [ 67/154] libgomp-0:14.2.1-1.fc42.ppc64 100% | 10.5 MiB/s | 366.0 KiB | 00m00s [ 68/154] debugedit-0:5.0-17.fc41.ppc64 100% | 3.8 MiB/s | 82.0 KiB | 00m00s [ 69/154] binutils-0:2.43.1-1.fc42.ppc6 100% | 65.7 MiB/s | 6.4 MiB | 00m00s [ 70/154] elfutils-0:0.191-8.fc41.ppc64 100% | 8.6 MiB/s | 556.5 KiB | 00m00s [ 71/154] file-0:5.45-7.fc41.ppc64le 100% | 2.7 MiB/s | 49.9 KiB | 00m00s [ 72/154] libarchive-0:3.7.4-3.fc41.ppc 100% | 20.2 MiB/s | 476.0 KiB | 00m00s [ 73/154] pkgconf-pkg-config-0:2.3.0-1. 100% | 552.0 KiB/s | 9.9 KiB | 00m00s [ 74/154] pkgconf-0:2.3.0-1.fc42.ppc64l 100% | 1.8 MiB/s | 45.9 KiB | 00m00s [ 75/154] pkgconf-m4-0:2.3.0-1.fc42.noa 100% | 596.7 KiB/s | 14.3 KiB | 00m00s [ 76/154] libpkgconf-0:2.3.0-1.fc42.ppc 100% | 1.4 MiB/s | 42.9 KiB | 00m00s [ 77/154] zstd-0:1.5.6-2.fc41.ppc64le 100% | 18.2 MiB/s | 504.1 KiB | 00m00s [ 78/154] ansible-srpm-macros-0:1-16.fc 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lua-srpm-macros-0:1-14.fc41.n 100% | 443.9 KiB/s | 8.9 KiB | 00m00s [ 92/154] openblas-srpm-macros-0:2-18.f 100% | 453.8 KiB/s | 7.7 KiB | 00m00s [ 93/154] package-notes-srpm-macros-0:0 100% | 468.1 KiB/s | 9.8 KiB | 00m00s [ 94/154] perl-srpm-macros-0:1-56.fc41. 100% | 500.7 KiB/s | 8.5 KiB | 00m00s [ 95/154] pyproject-srpm-macros-0:1.14. 100% | 583.7 KiB/s | 13.4 KiB | 00m00s [ 96/154] python-srpm-macros-0:3.13-3.f 100% | 1.1 MiB/s | 23.7 KiB | 00m00s [ 97/154] qt5-srpm-macros-0:5.15.15-1.f 100% | 523.4 KiB/s | 8.9 KiB | 00m00s [ 98/154] qt6-srpm-macros-0:6.7.2-3.fc4 100% | 434.6 KiB/s | 9.1 KiB | 00m00s [ 99/154] rust-srpm-macros-0:26.3-3.fc4 100% | 711.7 KiB/s | 12.1 KiB | 00m00s [100/154] zig-srpm-macros-0:1-3.fc41.no 100% | 406.2 KiB/s | 8.1 KiB | 00m00s [101/154] zip-0:3.0-41.fc41.ppc64le 100% | 8.1 MiB/s | 274.1 KiB | 00m00s [102/154] ed-0:1.20.2-2.fc41.ppc64le 100% | 2.8 MiB/s | 84.7 KiB | 00m00s [103/154] gdbm-1:1.23-7.fc41.ppc64le 100% | 4.1 MiB/s | 154.4 KiB | 00m00s 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KiB | 00m00s [117/154] pcre2-0:10.44-1.fc41.1.ppc64l 100% | 10.7 MiB/s | 251.9 KiB | 00m00s [118/154] cracklib-0:2.9.11-6.fc41.ppc6 100% | 3.3 MiB/s | 83.7 KiB | 00m00s [119/154] lz4-libs-0:1.10.0-1.fc41.ppc6 100% | 4.3 MiB/s | 97.7 KiB | 00m00s [120/154] libxml2-0:2.12.8-2.fc41.ppc64 100% | 18.3 MiB/s | 767.3 KiB | 00m00s [121/154] keyutils-libs-0:1.6.3-4.fc41. 100% | 1.5 MiB/s | 32.8 KiB | 00m00s [122/154] libverto-0:0.3.2-9.fc41.ppc64 100% | 1.0 MiB/s | 22.2 KiB | 00m00s [123/154] basesystem-0:11-21.fc41.noarc 100% | 216.8 KiB/s | 7.4 KiB | 00m00s [124/154] gmp-1:6.3.0-2.fc41.ppc64le 100% | 9.4 MiB/s | 309.0 KiB | 00m00s [125/154] filesystem-0:3.18-23.fc41.ppc 100% | 21.0 MiB/s | 1.1 MiB | 00m00s [126/154] mpfr-0:4.2.1-5.fc41.ppc64le 100% | 13.9 MiB/s | 354.9 KiB | 00m00s [127/154] elfutils-default-yama-scope-0 100% | 647.6 KiB/s | 12.3 KiB | 00m00s [128/154] elfutils-debuginfod-client-0: 100% | 1.8 MiB/s | 39.0 KiB | 00m00s [129/154] p11-kit-0:0.25.5-3.fc41.ppc64 100% | 18.1 MiB/s | 482.4 KiB | 00m00s [130/154] libstdc++-0:14.2.1-1.fc42.ppc 100% | 21.8 MiB/s | 1.0 MiB | 00m00s [131/154] p11-kit-trust-0:0.25.5-3.fc41 100% | 4.5 MiB/s | 148.4 KiB | 00m00s [132/154] jansson-0:2.13.1-10.fc41.ppc6 100% | 1.9 MiB/s | 49.9 KiB | 00m00s [133/154] add-determinism-0:0.3.6-1.fc4 100% | 19.4 MiB/s | 873.8 KiB | 00m00s [134/154] alternatives-0:1.30-1.fc41.pp 100% | 1.4 MiB/s | 44.8 KiB | 00m00s [135/154] libtasn1-0:4.19.0-9.fc41.ppc6 100% | 4.3 MiB/s | 79.3 KiB | 00m00s [136/154] libffi-0:3.4.6-3.fc42.ppc64le 100% | 1.9 MiB/s | 38.2 KiB | 00m00s [137/154] pcre2-syntax-0:10.44-1.fc41.1 100% | 5.4 MiB/s | 149.9 KiB | 00m00s [138/154] xxhash-libs-0:0.8.2-3.fc41.pp 100% | 2.0 MiB/s | 37.2 KiB | 00m00s [139/154] fedora-release-0:42-0.3.noarc 100% | 531.6 KiB/s | 12.2 KiB | 00m00s [140/154] fedora-release-identity-basic 100% | 500.6 KiB/s | 13.0 KiB | 00m00s [141/154] libcurl-0:8.9.1-3.fc42.ppc64l 100% | 10.9 MiB/s | 402.7 KiB | 00m00s [142/154] gdb-minimal-0:15.1-1.fc41.ppc 100% | 55.5 MiB/s | 4.3 MiB | 00m00s [143/154] libbrotli-0:1.1.0-5.fc41.ppc6 100% | 11.0 MiB/s | 382.0 KiB | 00m00s [144/154] libidn2-0:2.3.7-2.fc41.ppc64l 100% | 3.2 MiB/s | 115.1 KiB | 00m00s [145/154] libnghttp2-0:1.63.0-1.fc42.pp 100% | 4.4 MiB/s | 85.8 KiB | 00m00s [146/154] libpsl-0:0.21.5-4.fc41.ppc64l 100% | 2.4 MiB/s | 65.7 KiB | 00m00s [147/154] libssh-config-0:0.11.1-1.fc42 100% | 521.4 KiB/s | 9.4 KiB | 00m00s [148/154] libssh-0:0.11.1-1.fc42.ppc64l 100% | 9.9 MiB/s | 263.2 KiB | 00m00s [149/154] openldap-0:2.6.8-5.fc41.ppc64 100% | 10.4 MiB/s | 288.1 KiB | 00m00s [150/154] libevent-0:2.1.12-14.fc41.ppc 100% | 11.2 MiB/s | 274.8 KiB | 00m00s [151/154] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 27.8 MiB/s | 883.1 KiB | 00m00s [152/154] libtool-ltdl-0:2.4.7-12.fc41. 100% | 2.0 MiB/s | 39.7 KiB | 00m00s [153/154] libunistring-0:1.1-8.fc41.ppc 100% | 22.5 MiB/s | 575.2 KiB | 00m00s [154/154] publicsuffix-list-dafsa-0:202 100% | 1.6 MiB/s | 58.3 KiB | 00m00s -------------------------------------------------------------------------------- [154/154] Total 100% | 31.4 MiB/s | 56.4 MiB | 00m02s Running transaction Importing PGP key 0xE99D6AD1: Userid : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. [ 1/156] Verify package files 100% | 213.0 B/s | 154.0 B | 00m01s >>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.ppc64le >>> Stop pre-transaction scriptlet: filesystem-0:3.18-23.fc41.ppc64le [ 2/156] Prepare transaction 100% | 1.0 KiB/s | 154.0 B | 00m00s [ 3/156] Installing libgcc-0:14.2.1-1. 100% | 85.9 MiB/s | 352.1 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.2.1-1.fc42.ppc64le >>> Stop post-install scriptlet: libgcc-0:14.2.1-1.fc42.ppc64le [ 4/156] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 5/156] Installing libssh-config-0:0. 100% | 796.9 KiB/s | 816.0 B | 00m00s [ 6/156] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 7/156] Installing fedora-repos-rawhi 100% | 2.4 MiB/s | 2.4 KiB | 00m00s [ 8/156] Installing fedora-gpg-keys-0: 100% | 12.9 MiB/s | 172.2 KiB | 00m00s [ 9/156] Installing fedora-repos-0:42- 100% | 5.6 MiB/s | 5.7 KiB | 00m00s [ 10/156] Installing fedora-release-com 100% | 7.7 MiB/s | 23.7 KiB | 00m00s [ 11/156] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/156] Installing setup-0:2.15.0-5.f 100% | 22.2 MiB/s | 726.1 KiB | 00m00s >>> Running post-install scriptlet: setup-0:2.15.0-5.fc41.noarch >>> Stop post-install scriptlet: setup-0:2.15.0-5.fc41.noarch [ 13/156] Installing filesystem-0:3.18- 100% | 1.1 MiB/s | 212.5 KiB | 00m00s [ 14/156] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 15/156] Installing pcre2-syntax-0:10. 100% | 82.7 MiB/s | 254.1 KiB | 00m00s [ 16/156] Installing ncurses-base-0:6.5 100% | 21.5 MiB/s | 351.7 KiB | 00m00s [ 17/156] Installing glibc-minimal-lang 100% | 121.1 KiB/s | 124.0 B | 00m00s [ 18/156] Installing ncurses-libs-0:6.5 100% | 128.1 MiB/s | 2.4 MiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.40.9000-1.fc42.ppc64le >>> Stop pre-install scriptlet: glibc-0:2.40.9000-1.fc42.ppc64le warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 19/156] Installing glibc-0:2.40.9000- 100% | 132.0 MiB/s | 14.8 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.40.9000-1.fc42.ppc64le >>> Stop post-install scriptlet: glibc-0:2.40.9000-1.fc42.ppc64le [ 20/156] Installing bash-0:5.2.32-2.fc 100% | 131.6 MiB/s | 8.7 MiB | 00m00s >>> Running post-install scriptlet: bash-0:5.2.32-2.fc42.ppc64le >>> Stop post-install scriptlet: bash-0:5.2.32-2.fc42.ppc64le [ 21/156] Installing glibc-common-0:2.4 100% | 119.6 MiB/s | 2.6 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 22/156] Installing glibc-gconv-extra- 100% | 180.8 MiB/s | 49.2 MiB | 00m00s >>> Running post-install scriptlet: glibc-gconv-extra-0:2.40.9000-1.fc42.ppc64le >>> Stop post-install scriptlet: glibc-gconv-extra-0:2.40.9000-1.fc42.ppc64le [ 23/156] Installing zlib-ng-compat-0:2 100% | 85.5 MiB/s | 262.5 KiB | 00m00s [ 24/156] Installing xz-libs-1:5.6.2-2. 100% | 107.8 MiB/s | 331.2 KiB | 00m00s [ 25/156] Installing bzip2-libs-0:1.0.8 100% | 98.5 MiB/s | 201.8 KiB | 00m00s [ 26/156] Installing libuuid-0:2.40.2-8 100% | 96.9 MiB/s | 198.5 KiB | 00m00s [ 27/156] Installing readline-0:8.2-11. 100% | 123.2 MiB/s | 883.1 KiB | 00m00s [ 28/156] Installing popt-0:1.19-7.fc41 100% | 39.0 MiB/s | 279.4 KiB | 00m00s [ 29/156] Installing libblkid-0:2.40.2- 100% | 118.1 MiB/s | 483.8 KiB | 00m00s [ 30/156] Installing libxcrypt-0:4.4.36 100% | 98.0 MiB/s | 401.3 KiB | 00m00s [ 31/156] Installing libattr-0:2.5.2-4. 100% | 96.3 MiB/s | 197.2 KiB | 00m00s [ 32/156] Installing libacl-0:2.3.2-2.f 100% | 96.0 MiB/s | 196.6 KiB | 00m00s [ 33/156] Installing libzstd-0:1.5.6-2. 100% | 120.8 MiB/s | 989.2 KiB | 00m00s [ 34/156] Installing elfutils-libelf-0: 100% | 131.4 MiB/s | 1.3 MiB | 00m00s [ 35/156] Installing gmp-1:6.3.0-2.fc41 100% | 104.1 MiB/s | 852.5 KiB | 00m00s [ 36/156] Installing libstdc++-0:14.2.1 100% | 134.8 MiB/s | 3.9 MiB | 00m00s [ 37/156] Installing libeconf-0:0.6.2-3 100% | 67.6 MiB/s | 207.6 KiB | 00m00s [ 38/156] Installing gdbm-libs-1:1.23-7 100% | 139.1 MiB/s | 427.2 KiB | 00m00s [ 39/156] Installing mpfr-0:4.2.1-5.fc4 100% | 106.2 MiB/s | 978.6 KiB | 00m00s [ 40/156] Installing gawk-0:5.3.0-4.fc4 100% | 141.0 MiB/s | 4.5 MiB | 00m00s [ 41/156] Installing dwz-0:0.15-7.fc41. 100% | 88.3 MiB/s | 452.2 KiB | 00m00s [ 42/156] Installing unzip-0:6.0-64.fc4 100% | 119.7 MiB/s | 858.0 KiB | 00m00s [ 43/156] Installing file-libs-0:5.45-7 100% | 190.3 MiB/s | 10.1 MiB | 00m00s [ 44/156] Installing file-0:5.45-7.fc41 100% | 23.9 MiB/s | 268.9 KiB | 00m00s >>> Running pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42. >>> Stop pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.noa [ 45/156] Installing crypto-policies-0: 100% | 10.6 MiB/s | 163.2 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42 >>> Stop post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.no [ 46/156] Installing libsmartcols-0:2.4 100% | 86.6 MiB/s | 354.6 KiB | 00m00s [ 47/156] Installing libcap-ng-0:0.8.5- 100% | 136.2 MiB/s | 418.4 KiB | 00m00s [ 48/156] Installing audit-libs-0:4.0.2 100% | 110.2 MiB/s | 677.3 KiB | 00m00s [ 49/156] Installing pam-libs-0:1.6.1-6 100% | 118.9 MiB/s | 608.8 KiB | 00m00s [ 50/156] Installing libcap-0:2.70-4.fc 100% | 137.5 MiB/s | 1.4 MiB | 00m00s [ 51/156] Installing systemd-libs-0:256 100% | 131.3 MiB/s | 3.0 MiB | 00m00s [ 52/156] Installing lua-libs-0:5.4.6-6 100% | 111.8 MiB/s | 458.1 KiB | 00m00s [ 53/156] Installing libcom_err-0:1.47. 100% | 117.3 MiB/s | 240.2 KiB | 00m00s [ 54/156] Installing libsepol-0:3.7-2.f 100% | 122.7 MiB/s | 1.1 MiB | 00m00s [ 55/156] Installing pcre2-0:10.44-1.fc 100% | 118.4 MiB/s | 970.3 KiB | 00m00s [ 56/156] Installing libselinux-0:3.7-5 100% | 80.6 MiB/s | 330.3 KiB | 00m00s [ 57/156] Installing sed-0:4.9-3.fc41.p 100% | 75.8 MiB/s | 1.0 MiB | 00m00s [ 58/156] Installing grep-0:3.11-9.fc41 100% | 77.3 MiB/s | 1.2 MiB | 00m00s [ 59/156] Installing findutils-1:4.10.0 100% | 103.4 MiB/s | 2.2 MiB | 00m00s [ 60/156] Installing xz-1:5.6.2-2.fc41. 100% | 78.0 MiB/s | 1.5 MiB | 00m00s [ 61/156] Installing libmount-0:2.40.2- 100% | 107.3 MiB/s | 549.1 KiB | 00m00s [ 62/156] Installing lz4-libs-0:1.10.0- 100% | 106.2 MiB/s | 326.3 KiB | 00m00s [ 63/156] Installing alternatives-0:1.3 100% | 107.3 MiB/s | 219.8 KiB | 00m00s [ 64/156] Installing libtasn1-0:4.19.0- 100% | 85.3 MiB/s | 349.2 KiB | 00m00s [ 65/156] Installing libunistring-0:1.1 100% | 124.8 MiB/s | 1.9 MiB | 00m00s [ 66/156] Installing libidn2-0:2.3.7-2. 100% | 56.5 MiB/s | 462.8 KiB | 00m00s [ 67/156] Installing libpsl-0:0.21.5-4. 100% | 96.4 MiB/s | 197.3 KiB | 00m00s [ 68/156] Installing zstd-0:1.5.6-2.fc4 100% | 129.1 MiB/s | 2.1 MiB | 00m00s [ 69/156] Installing util-linux-core-0: 100% | 151.2 MiB/s | 6.2 MiB | 00m00s [ 70/156] Installing tar-2:1.35-4.fc41. 100% | 110.1 MiB/s | 3.2 MiB | 00m00s [ 71/156] Installing libsemanage-0:3.7- 100% | 68.5 MiB/s | 491.3 KiB | 00m00s [ 72/156] Installing shadow-utils-2:4.1 100% | 97.9 MiB/s | 7.4 MiB | 00m00s [ 73/156] Installing zip-0:3.0-41.fc41. 100% | 124.8 MiB/s | 1.2 MiB | 00m00s [ 74/156] Installing gdbm-1:1.23-7.fc41 100% | 101.3 MiB/s | 933.2 KiB | 00m00s [ 75/156] Installing cyrus-sasl-lib-0:2 100% | 131.3 MiB/s | 3.5 MiB | 00m00s [ 76/156] Installing libfdisk-0:2.40.2- 100% | 99.6 MiB/s | 612.2 KiB | 00m00s [ 77/156] Installing bzip2-0:1.0.8-19.f 100% | 84.4 MiB/s | 432.0 KiB | 00m00s [ 78/156] Installing libxml2-0:2.12.8-2 100% | 119.9 MiB/s | 2.5 MiB | 00m00s [ 79/156] Installing sqlite-libs-0:3.46 100% | 124.8 MiB/s | 2.0 MiB | 00m00s [ 80/156] Installing add-determinism-0: 100% | 126.8 MiB/s | 2.4 MiB | 00m00s [ 81/156] Installing build-reproducibil 100% | 1.0 MiB/s | 1.0 KiB | 00m00s [ 82/156] Installing ed-0:1.20.2-2.fc41 100% | 69.6 MiB/s | 285.1 KiB | 00m00s [ 83/156] Installing patch-0:2.7.6-25.f 100% | 95.7 MiB/s | 392.1 KiB | 00m00s [ 84/156] Installing elfutils-default-y 100% | 408.6 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.noar [ 85/156] Installing elfutils-libs-0:0. 100% | 104.3 MiB/s | 1.0 MiB | 00m00s [ 86/156] Installing cpio-0:2.15-2.fc41 100% | 81.4 MiB/s | 1.2 MiB | 00m00s [ 87/156] Installing diffutils-0:3.10-8 100% | 103.4 MiB/s | 2.2 MiB | 00m00s [ 88/156] Installing librtas-0:2.0.6-2. 100% | 32.5 MiB/s | 499.7 KiB | 00m00s >>> Running post-install scriptlet: librtas-0:2.0.6-2.fc41.ppc64le >>> Stop post-install scriptlet: librtas-0:2.0.6-2.fc41.ppc64le [ 89/156] Installing libgomp-0:14.2.1-1 100% | 113.4 MiB/s | 696.5 KiB | 00m00s [ 90/156] Installing libpkgconf-0:2.3.0 100% | 97.2 MiB/s | 199.1 KiB | 00m00s [ 91/156] Installing pkgconf-0:2.3.0-1. 100% | 59.3 MiB/s | 243.0 KiB | 00m00s [ 92/156] Installing keyutils-libs-0:1. 100% | 111.1 MiB/s | 227.5 KiB | 00m00s [ 93/156] Installing libverto-0:0.3.2-9 100% | 97.2 MiB/s | 199.0 KiB | 00m00s [ 94/156] Installing jansson-0:2.13.1-1 100% | 72.2 MiB/s | 221.7 KiB | 00m00s [ 95/156] Installing libffi-0:3.4.6-3.f 100% | 71.4 MiB/s | 219.4 KiB | 00m00s [ 96/156] Installing p11-kit-0:0.25.5-3 100% | 98.3 MiB/s | 3.1 MiB | 00m00s [ 97/156] Installing p11-kit-trust-0:0. 100% | 53.5 MiB/s | 657.0 KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.ppc64le >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.ppc64le [ 98/156] Installing xxhash-libs-0:0.8. 100% | 69.4 MiB/s | 213.3 KiB | 00m00s [ 99/156] Installing libbrotli-0:1.1.0- 100% | 115.0 MiB/s | 1.3 MiB | 00m00s [100/156] Installing libnghttp2-0:1.63. 100% | 79.9 MiB/s | 327.2 KiB | 00m00s [101/156] Installing libtool-ltdl-0:2.4 100% | 109.0 MiB/s | 223.2 KiB | 00m00s [102/156] Installing rust-srpm-macros-0 100% | 5.4 MiB/s | 5.6 KiB | 00m00s [103/156] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [104/156] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [105/156] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [106/156] Installing package-notes-srpm 100% | 2.0 MiB/s | 2.0 KiB | 00m00s [107/156] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [108/156] Installing ocaml-srpm-macros- 100% | 2.1 MiB/s | 2.2 KiB | 00m00s [109/156] Installing kernel-srpm-macros 100% | 2.3 MiB/s | 2.3 KiB | 00m00s [110/156] Installing gnat-srpm-macros-0 100% | 1.2 MiB/s | 1.3 KiB | 00m00s [111/156] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [112/156] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [113/156] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [114/156] Installing pkgconf-m4-0:2.3.0 100% | 14.5 MiB/s | 14.8 KiB | 00m00s [115/156] Installing pkgconf-pkg-config 100% | 886.7 KiB/s | 1.8 KiB | 00m00s [116/156] Installing coreutils-common-0 100% | 123.0 MiB/s | 11.2 MiB | 00m00s [117/156] Installing openssl-libs-1:3.2 100% | 140.8 MiB/s | 8.6 MiB | 00m00s [118/156] Installing coreutils-0:9.5-9. 100% | 169.2 MiB/s | 21.5 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n >>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar [119/156] Installing ca-certificates-0: 100% | 1.4 MiB/s | 2.4 MiB | 00m02s >>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41. >>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noa [120/156] Installing krb5-libs-0:1.21.3 100% | 132.6 MiB/s | 3.8 MiB | 00m00s [121/156] Installing libarchive-0:3.7.4 100% | 120.8 MiB/s | 1.3 MiB | 00m00s [122/156] Installing libtirpc-0:1.3.5-0 100% | 79.0 MiB/s | 404.5 KiB | 00m00s [123/156] Installing gzip-0:1.13-2.fc41 100% | 68.2 MiB/s | 558.4 KiB | 00m00s [124/156] Installing authselect-libs-0: 100% | 57.8 MiB/s | 946.7 KiB | 00m00s [125/156] Installing cracklib-0:2.9.11- 100% | 66.0 MiB/s | 945.6 KiB | 00m00s [126/156] Installing libpwquality-0:1.4 100% | 73.8 MiB/s | 1.1 MiB | 00m00s [127/156] Installing libnsl2-0:2.0.1-2. 100% | 54.4 MiB/s | 222.9 KiB | 00m00s [128/156] Installing pam-0:1.6.1-6.fc42 100% | 141.3 MiB/s | 11.0 MiB | 00m00s [129/156] Installing libssh-0:0.11.1-1. 100% | 108.8 MiB/s | 779.8 KiB | 00m00s [130/156] Installing rpm-sequoia-0:1.7. 100% | 130.3 MiB/s | 2.9 MiB | 00m00s [131/156] Installing rpm-libs-0:4.19.93 100% | 128.4 MiB/s | 1.2 MiB | 00m00s [132/156] Installing rpm-build-libs-0:4 100% | 95.6 MiB/s | 391.5 KiB | 00m00s [133/156] Installing libevent-0:2.1.12- 100% | 132.1 MiB/s | 1.6 MiB | 00m00s [134/156] Installing openldap-0:2.6.8-5 100% | 101.9 MiB/s | 1.1 MiB | 00m00s [135/156] Installing libcurl-0:8.9.1-3. 100% | 108.9 MiB/s | 1.1 MiB | 00m00s [136/156] Installing elfutils-debuginfo 100% | 97.3 MiB/s | 398.5 KiB | 00m00s [137/156] Installing binutils-0:2.43.1- 100% | 140.7 MiB/s | 33.1 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.43.1-1.fc42.ppc64le >>> Stop post-install scriptlet: binutils-0:2.43.1-1.fc42.ppc64le [138/156] Installing elfutils-0:0.191-8 100% | 154.9 MiB/s | 5.3 MiB | 00m00s [139/156] Installing gdb-minimal-0:15.1 100% | 136.2 MiB/s | 14.2 MiB | 00m00s [140/156] Installing debugedit-0:5.0-17 100% | 98.0 MiB/s | 501.8 KiB | 00m00s [141/156] Installing curl-0:8.9.1-3.fc4 100% | 47.6 MiB/s | 926.7 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.93-1.fc42.ppc64le >>> Stop pre-install scriptlet: rpm-0:4.19.93-1.fc42.ppc64le [142/156] Installing rpm-0:4.19.93-1.fc 100% | 69.8 MiB/s | 3.4 MiB | 00m00s [143/156] Installing efi-srpm-macros-0: 100% | 20.1 MiB/s | 41.2 KiB | 00m00s [144/156] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [145/156] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [146/156] Installing fonts-srpm-macros- 100% | 27.8 MiB/s | 57.0 KiB | 00m00s [147/156] Installing forge-srpm-macros- 100% | 19.7 MiB/s | 40.4 KiB | 00m00s [148/156] Installing go-srpm-macros-0:3 100% | 30.3 MiB/s | 62.0 KiB | 00m00s [149/156] Installing python-srpm-macros 100% | 25.5 MiB/s | 52.2 KiB | 00m00s [150/156] Installing redhat-rpm-config- 100% | 26.9 MiB/s | 192.9 KiB | 00m00s [151/156] Installing rpm-build-0:4.19.9 100% | 116.4 MiB/s | 1.4 MiB | 00m00s [152/156] Installing pyproject-srpm-mac 100% | 832.0 KiB/s | 2.5 KiB | 00m00s [153/156] Installing util-linux-0:2.40. 100% | 143.8 MiB/s | 17.3 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-8.fc42.ppc64le >>> Stop post-install scriptlet: util-linux-0:2.40.2-8.fc42.ppc64le [154/156] Installing authselect-0:1.5.0 100% | 51.1 MiB/s | 313.8 KiB | 00m00s [155/156] Installing which-0:2.21-42.fc 100% | 61.1 MiB/s | 250.2 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [156/156] Installing info-0:7.1-3.fc41. 100% | 287.4 KiB/s | 677.9 KiB | 00m02s >>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.ppc64le >>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.ppc64le >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.ppc64le >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.ppc64le >>> Running post-transaction scriptlet: rpm-0:4.19.93-1.fc42.ppc64le >>> Stop post-transaction scriptlet: rpm-0:4.19.93-1.fc42.ppc64le >>> Running trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.ppc64le >>> Stop trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.ppc64le >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.ppc64le >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.ppc64le Complete! Warning: skipped PGP checks for 153 packages from repository: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.ppc64le alternatives-1.30-1.fc41.ppc64le ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.ppc64le authselect-1.5.0-7.fc41.ppc64le authselect-libs-1.5.0-7.fc41.ppc64le basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.ppc64le binutils-2.43.1-1.fc42.ppc64le build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.ppc64le bzip2-libs-1.0.8-19.fc41.ppc64le ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch coreutils-9.5-9.fc42.ppc64le coreutils-common-9.5-9.fc42.ppc64le cpio-2.15-2.fc41.ppc64le cracklib-2.9.11-6.fc41.ppc64le crypto-policies-20240828-1.git5f66e81.fc42.noarch curl-8.9.1-3.fc42.ppc64le cyrus-sasl-lib-2.1.28-27.fc41.ppc64le debugedit-5.0-17.fc41.ppc64le diffutils-3.10-8.fc41.ppc64le dwz-0.15-7.fc41.ppc64le ed-1.20.2-2.fc41.ppc64le efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.ppc64le elfutils-debuginfod-client-0.191-8.fc41.ppc64le elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.ppc64le elfutils-libs-0.191-8.fc41.ppc64le fedora-gpg-keys-42-0.1.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.1.noarch fedora-repos-rawhide-42-0.1.noarch file-5.45-7.fc41.ppc64le file-libs-5.45-7.fc41.ppc64le filesystem-3.18-23.fc41.ppc64le findutils-4.10.0-4.fc41.ppc64le fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.ppc64le gdb-minimal-15.1-1.fc41.ppc64le gdbm-1.23-7.fc41.ppc64le gdbm-libs-1.23-7.fc41.ppc64le ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40.9000-1.fc42.ppc64le glibc-common-2.40.9000-1.fc42.ppc64le glibc-gconv-extra-2.40.9000-1.fc42.ppc64le glibc-minimal-langpack-2.40.9000-1.fc42.ppc64le gmp-6.3.0-2.fc41.ppc64le gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.ppc64le gzip-1.13-2.fc41.ppc64le info-7.1-3.fc41.ppc64le jansson-2.13.1-10.fc41.ppc64le kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.ppc64le krb5-libs-1.21.3-2.fc41.ppc64le libacl-2.3.2-2.fc41.ppc64le libarchive-3.7.4-3.fc41.ppc64le libattr-2.5.2-4.fc41.ppc64le libblkid-2.40.2-8.fc42.ppc64le libbrotli-1.1.0-5.fc41.ppc64le libcap-2.70-4.fc41.ppc64le libcap-ng-0.8.5-3.fc41.ppc64le libcom_err-1.47.1-3.fc41.ppc64le libcurl-8.9.1-3.fc42.ppc64le libeconf-0.6.2-3.fc41.ppc64le libevent-2.1.12-14.fc41.ppc64le libfdisk-2.40.2-8.fc42.ppc64le libffi-3.4.6-3.fc42.ppc64le libgcc-14.2.1-1.fc42.ppc64le libgomp-14.2.1-1.fc42.ppc64le libidn2-2.3.7-2.fc41.ppc64le libmount-2.40.2-8.fc42.ppc64le libnghttp2-1.63.0-1.fc42.ppc64le libnsl2-2.0.1-2.fc41.ppc64le libpkgconf-2.3.0-1.fc42.ppc64le libpsl-0.21.5-4.fc41.ppc64le libpwquality-1.4.5-11.fc41.ppc64le librtas-2.0.6-2.fc41.ppc64le libselinux-3.7-5.fc41.ppc64le libsemanage-3.7-2.fc41.ppc64le libsepol-3.7-2.fc41.ppc64le libsmartcols-2.40.2-8.fc42.ppc64le libssh-0.11.1-1.fc42.ppc64le libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-1.fc42.ppc64le libtasn1-4.19.0-9.fc41.ppc64le libtirpc-1.3.5-0.fc41.ppc64le libtool-ltdl-2.4.7-12.fc41.ppc64le libunistring-1.1-8.fc41.ppc64le libuuid-2.40.2-8.fc42.ppc64le libverto-0.3.2-9.fc41.ppc64le libxcrypt-4.4.36-7.fc41.ppc64le libxml2-2.12.8-2.fc41.ppc64le libzstd-1.5.6-2.fc41.ppc64le lua-libs-5.4.6-6.fc41.ppc64le lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.ppc64le mpfr-4.2.1-5.fc41.ppc64le ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.ppc64le ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.ppc64le openssl-libs-3.2.2-5.fc41.ppc64le p11-kit-0.25.5-3.fc41.ppc64le p11-kit-trust-0.25.5-3.fc41.ppc64le package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc42.ppc64le pam-libs-1.6.1-6.fc42.ppc64le patch-2.7.6-25.fc41.ppc64le pcre2-10.44-1.fc41.1.ppc64le pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.ppc64le pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.ppc64le popt-1.19-7.fc41.ppc64le publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.14.0-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.ppc64le redhat-rpm-config-294-1.fc42.noarch rpm-4.19.93-1.fc42.ppc64le rpm-build-4.19.93-1.fc42.ppc64le rpm-build-libs-4.19.93-1.fc42.ppc64le rpm-libs-4.19.93-1.fc42.ppc64le rpm-sequoia-1.7.0-2.fc41.ppc64le rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.ppc64le setup-2.15.0-5.fc41.noarch shadow-utils-4.15.1-9.fc41.ppc64le sqlite-libs-3.46.1-1.fc41.ppc64le systemd-libs-256.5-1.fc42.ppc64le tar-1.35-4.fc41.ppc64le unzip-6.0-64.fc41.ppc64le util-linux-2.40.2-8.fc42.ppc64le util-linux-core-2.40.2-8.fc42.ppc64le which-2.21-42.fc41.ppc64le xxhash-libs-0.8.2-3.fc41.ppc64le xz-5.6.2-2.fc41.ppc64le xz-libs-5.6.2-2.fc41.ppc64le zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.ppc64le zlib-ng-compat-2.1.7-2.fc41.ppc64le zstd-1.5.6-2.fc41.ppc64le Start: buildsrpm Start: rpmbuild -bs Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1725580800 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-7.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-41-ppc64le-1725633340.569456/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-ppc64le-1725633340.569456/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-9cs46183/ProDy/ProDy.spec) Config(child) 0 minutes 54 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-7.fc42.src.rpm) Config(fedora-41-ppc64le) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-ppc64le-bootstrap-1725633340.569456/root. INFO: reusing tmpfs at /var/lib/mock/fedora-41-ppc64le-bootstrap-1725633340.569456/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-ppc64le-1725633340.569456/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-6.fc41.ppc64le rpm-sequoia-1.7.0-2.fc41.ppc64le dnf5-5.2.5.0-2.fc41.ppc64le dnf5-plugins-5.2.5.0-2.fc41.ppc64le Finish: chroot init Start: build phase for ProDy-2.4.1-7.fc42.src.rpm Start: build setup for ProDy-2.4.1-7.fc42.src.rpm Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1725580800 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-7.fc42.src.rpm Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 67.2 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 40.3 KiB/s | 1.5 KiB | 00m00s fedora 100% | 157.5 KiB/s | 4.6 KiB | 00m00s updates 100% | 164.5 KiB/s | 4.9 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: gcc ppc64le 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 92.9 MiB gcc-c++ ppc64le 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36.1 MiB python3-biopython ppc64le 1.84-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 31.9 MiB python3-devel ppc64le 3.13.0~rc1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB python3-matplotlib ppc64le 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22.0 MiB python3-nose noarch 1.3.7-59.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB python3-numpy ppc64le 1:1.26.4-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43.9 MiB python3-scipy ppc64le 1.11.3-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.5 MiB python3-setuptools noarch 69.2.0-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 68.7 KiB python3-brotli ppc64le 1.1.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB python3-cairo ppc64le 1.25.1-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 648.5 KiB python3-charset-normalizer noarch 3.3.2-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 314.8 KiB python3-contourpy ppc64le 1.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 953.9 KiB python3-cycler noarch 0.11.0-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.6 KiB python3-dateutil noarch 1:2.8.2-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 879.2 KiB python3-fonttools ppc64le 4.53.1-2.fc42 copr_base 19.0 MiB python3-fs noarch 2.4.16-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB python3-idna noarch 3.8-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 596.4 KiB python3-kiwisolver ppc64le 1.4.7-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 289.2 KiB python3-libs ppc64le 3.13.0~rc1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 50.6 MiB python3-lxml ppc64le 5.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.3 MiB python3-matplotlib-data noarch 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 741.5 KiB python3-matplotlib-data-fonts noarch 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.9 MiB python3-matplotlib-tk ppc64le 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 365.9 KiB python3-numpy-f2py ppc64le 1:1.26.4-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.8 MiB python3-olefile noarch 0.47-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 340.4 KiB python3-packaging noarch 24.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 422.3 KiB python3-pillow ppc64le 10.4.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.7 MiB python3-pillow-tk ppc64le 10.4.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 248.3 KiB python3-platformdirs noarch 4.2.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 168.6 KiB python3-pooch noarch 1.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 625.5 KiB python3-pyparsing noarch 3.1.2-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB python3-requests noarch 2.32.3-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 485.9 KiB python3-rpm-generators noarch 14-11.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.4 KiB python3-six noarch 1.16.0-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 118.3 KiB python3-tkinter ppc64le 3.13.0~rc1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB tcl ppc64le 1:8.6.14-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 MiB tk ppc64le 1:8.6.14-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.2 MiB tzdata noarch 2024a-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB xml-common noarch 0.6.3-65.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB Transaction Summary: Installing: 107 packages Total size of inbound packages is 152 MiB. Need to download 152 MiB. After this operation 600 MiB will be used (install 600 MiB, remove 0 B). [ 1/107] gcc-c++-0:14.2.1-1.fc42.ppc64 100% | 41.3 MiB/s | 12.7 MiB | 00m00s [ 2/107] python3-devel-0:3.13.0~rc1-3. 100% | 15.8 MiB/s | 356.5 KiB | 00m00s [ 3/107] python3-biopython-0:1.84-3.fc 100% | 27.6 MiB/s | 11.6 MiB | 00m00s [ 4/107] python3-nose-0:1.3.7-59.fc41. 100% | 13.9 MiB/s | 327.2 KiB | 00m00s [ 5/107] python3-matplotlib-0:3.9.1-2. 100% | 34.4 MiB/s | 4.5 MiB | 00m00s [ 6/107] gcc-0:14.2.1-1.fc42.ppc64le 100% | 52.3 MiB/s | 32.4 MiB | 00m01s [ 7/107] python3-setuptools-0:69.2.0-8 100% | 37.2 MiB/s | 1.4 MiB | 00m00s [ 8/107] python3-numpy-1:1.26.4-8.fc41 100% | 27.8 MiB/s | 7.0 MiB | 00m00s [ 9/107] python3-urllib3-0:1.26.19-2.f 100% | 4.9 MiB/s | 259.0 KiB | 00m00s [ 10/107] libstdc++-devel-0:14.2.1-1.fc 100% | 36.1 MiB/s | 2.6 MiB | 00m00s [ 11/107] python3-0:3.13.0~rc1-3.fc42.p 100% | 1.3 MiB/s | 27.5 KiB | 00m00s [ 12/107] cpp-0:14.2.1-1.fc42.ppc64le 100% | 67.1 MiB/s | 10.5 MiB | 00m00s [ 13/107] glibc-devel-0:2.40.9000-1.fc4 100% | 14.7 MiB/s | 572.6 KiB | 00m00s [ 14/107] gcc-plugin-annobin-0:14.2.1-1 100% | 2.9 MiB/s | 56.5 KiB | 00m00s [ 15/107] python3-idna-0:3.8-1.fc42.noa 100% | 5.4 MiB/s | 110.5 KiB | 00m00s [ 16/107] flexiblas-netlib-0:3.4.4-3.fc 100% | 47.6 MiB/s | 2.9 MiB | 00m00s [ 17/107] python3-scipy-0:1.11.3-15.fc4 100% | 26.9 MiB/s | 16.2 MiB | 00m01s [ 18/107] python3-libs-0:3.13.0~rc1-3.f 100% | 29.1 MiB/s | 8.8 MiB | 00m00s [ 19/107] libgfortran-0:14.2.1-1.fc42.p 100% | 5.2 MiB/s | 632.2 KiB | 00m00s [ 20/107] python3-numpy-f2py-1:1.26.4-8 100% | 9.1 MiB/s | 501.1 KiB | 00m00s [ 21/107] python3-pooch-0:1.8.2-3.fc41. 100% | 6.5 MiB/s | 126.4 KiB | 00m00s [ 22/107] python3-packaging-0:24.1-2.fc 100% | 6.0 MiB/s | 116.2 KiB | 00m00s [ 23/107] python3-platformdirs-0:4.2.2- 100% | 2.0 MiB/s | 41.0 KiB | 00m00s [ 24/107] python3-requests-0:2.32.3-3.f 100% | 7.3 MiB/s | 149.0 KiB | 00m00s [ 25/107] freetype-0:2.13.2-6.fc41.ppc6 100% | 21.0 MiB/s | 472.3 KiB | 00m00s [ 26/107] libqhull_r-1:8.0.2-5.fc41.ppc 100% | 11.2 MiB/s | 218.7 KiB | 00m00s [ 27/107] dejavu-sans-fonts-0:2.37-24.f 100% | 23.3 MiB/s | 1.3 MiB | 00m00s [ 28/107] python3-cairo-0:1.25.1-5.fc41 100% | 4.4 MiB/s | 130.8 KiB | 00m00s [ 29/107] python3-contourpy-0:1.3.0-1.f 100% | 13.4 MiB/s | 261.2 KiB | 00m00s [ 30/107] python3-cycler-0:0.11.0-13.fc 100% | 1.2 MiB/s | 21.3 KiB | 00m00s [ 31/107] python3-dateutil-1:2.8.2-16.f 100% | 16.2 MiB/s | 349.0 KiB | 00m00s [ 32/107] python3-kiwisolver-0:1.4.7-1. 100% | 3.8 MiB/s | 70.2 KiB | 00m00s [ 33/107] python3-matplotlib-data-0:3.9 100% | 18.4 MiB/s | 508.9 KiB | 00m00s [ 34/107] python3-matplotlib-tk-0:3.9.1 100% | 5.8 MiB/s | 112.7 KiB | 00m00s [ 35/107] python3-tkinter-0:3.13.0~rc1- 100% | 13.9 MiB/s | 355.6 KiB | 00m00s [ 36/107] python3-pillow-0:10.4.0-2.fc4 100% | 28.9 MiB/s | 978.0 KiB | 00m00s [ 37/107] python3-pyparsing-0:3.1.2-7.f 100% | 12.6 MiB/s | 270.3 KiB | 00m00s [ 38/107] expat-0:2.6.3-1.fc42.ppc64le 100% | 6.5 MiB/s | 119.5 KiB | 00m00s [ 39/107] python3-fonttools-0:4.53.1-2. 100% | 25.1 MiB/s | 2.9 MiB | 00m00s [ 40/107] libb2-0:0.98.1-12.fc41.ppc64l 100% | 936.3 KiB/s | 25.3 KiB | 00m00s [ 41/107] mpdecimal-0:2.5.1-16.fc41.ppc 100% | 3.4 MiB/s | 103.0 KiB | 00m00s [ 42/107] tzdata-0:2024a-9.fc41.noarch 100% | 17.5 MiB/s | 430.6 KiB | 00m00s [ 43/107] pyproject-rpm-macros-0:1.14.0 100% | 2.2 MiB/s | 42.6 KiB | 00m00s [ 44/107] python-pip-wheel-0:24.2-1.fc4 100% | 29.3 MiB/s | 1.2 MiB | 00m00s [ 45/107] python-rpm-macros-0:3.13-3.fc 100% | 1.0 MiB/s | 17.7 KiB | 00m00s [ 46/107] python3-rpm-generators-0:14-1 100% | 1.5 MiB/s | 29.3 KiB | 00m00s [ 47/107] python3-rpm-macros-0:3.13-3.f 100% | 691.3 KiB/s | 12.4 KiB | 00m00s [ 48/107] python3-six-0:1.16.0-23.fc41. 100% | 2.2 MiB/s | 41.2 KiB | 00m00s [ 49/107] cairo-0:1.18.0-4.fc41.ppc64le 100% | 32.5 MiB/s | 798.4 KiB | 00m00s [ 50/107] flex-0:2.6.4-18.fc41.ppc64le 100% | 12.9 MiB/s | 291.1 KiB | 00m00s [ 51/107] libxcrypt-devel-0:4.4.36-7.fc 100% | 1.6 MiB/s | 28.8 KiB | 00m00s [ 52/107] kernel-headers-0:6.11.0-0.rc6 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m4-0:1.4.19-10.fc41.ppc64le 100% | 13.4 MiB/s | 314.7 KiB | 00m00s [ 66/107] fonts-filesystem-1:2.0.5-17.f 100% | 471.3 KiB/s | 8.5 KiB | 00m00s [ 67/107] fontconfig-0:2.15.0-8.fc41.pp 100% | 14.8 MiB/s | 302.7 KiB | 00m00s [ 68/107] libX11-common-0:1.8.10-2.fc42 100% | 7.1 MiB/s | 144.8 KiB | 00m00s [ 69/107] libX11-0:1.8.10-2.fc42.ppc64l 100% | 22.8 MiB/s | 699.0 KiB | 00m00s [ 70/107] libXext-0:1.3.6-2.fc41.ppc64l 100% | 1.6 MiB/s | 40.8 KiB | 00m00s [ 71/107] libXrender-0:0.9.11-7.fc41.pp 100% | 1.4 MiB/s | 29.2 KiB | 00m00s [ 72/107] libxcb-0:1.17.0-2.fc41.ppc64l 100% | 12.3 MiB/s | 251.2 KiB | 00m00s [ 73/107] python3-fs-0:2.4.16-9.fc41.no 100% | 13.0 MiB/s | 280.1 KiB | 00m00s [ 74/107] python3-brotli-0:1.1.0-5.fc41 100% | 10.1 MiB/s | 384.2 KiB | 00m00s [ 75/107] python3-lxml-0:5.3.0-1.fc42.p 100% | 45.2 MiB/s | 1.4 MiB | 00m00s [ 76/107] tcl-1:8.6.14-2.fc41.ppc64le 100% | 21.8 MiB/s | 1.2 MiB | 00m00s [ 77/107] tk-1:8.6.14-2.fc41.ppc64le 100% | 34.1 MiB/s | 1.6 MiB | 00m00s [ 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368.6 KiB | 00m00s [103/109] Installing python3-matplotlib 100% | 77.3 MiB/s | 22.2 MiB | 00m00s [104/109] Installing libstdc++-devel-0: 100% | 84.4 MiB/s | 15.5 MiB | 00m00s [105/109] Installing gcc-c++-0:14.2.1-1 100% | 110.8 MiB/s | 36.1 MiB | 00m00s [106/109] Installing python3-nose-0:1.3 100% | 47.3 MiB/s | 1.3 MiB | 00m00s [107/109] Installing python3-biopython- 100% | 78.4 MiB/s | 32.2 MiB | 00m00s [108/109] Installing gcc-plugin-annobin 100% | 7.5 MiB/s | 198.5 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [109/109] Installing annobin-plugin-gcc 100% | 2.5 MiB/s | 1.1 MiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.ppc64le >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.ppc64le >>> Running trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.ppc64le >>> Stop trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.ppc64le >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.ppc64le >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.ppc64le >>> Running trigger-install scriptlet: glib2-0:2.82.0-1.fc42.ppc64le >>> Stop trigger-install scriptlet: glib2-0:2.82.0-1.fc42.ppc64le >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.ppc64le >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.ppc64le Complete! Warning: skipped PGP checks for 107 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: build setup for ProDy-2.4.1-7.fc42.src.rpm Start: rpmbuild ProDy-2.4.1-7.fc42.src.rpm Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1725580800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.UaKxMM + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + test -d /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/rm -rf /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.z0Yjvy + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd /builddir/build/BUILD/ProDy-2.4.1-build + rm -rf ProDy-2.4.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ProDy-2.4.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd ProDy-2.4.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/ProDy-change_requires.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find prody/proteins/ccealign -name '*.h' -exec chmod 0644 '{}' ';' + find prody/proteins/ccealign -name '*.cpp' -exec chmod 0644 '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.O18lvt + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-ppc64le-cpython-313 creating build/lib.linux-ppc64le-cpython-313/prody copying prody/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody creating build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/acceptor.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/angle.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/atom.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/atomgroup.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/atomic.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/atommap.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/bond.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/chain.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/crossterm.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/dihedral.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/donor.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/fields.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/flags.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/functions.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/hierview.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/improper.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/nbexclusion.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/pointer.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/residue.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/segment.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/select.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/selection.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic copying prody/atomic/subset.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic creating build/lib.linux-ppc64le-cpython-313/prody/database copying prody/database/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/database copying prody/database/cath.py -> build/lib.linux-ppc64le-cpython-313/prody/database copying prody/database/dali.py -> build/lib.linux-ppc64le-cpython-313/prody/database copying prody/database/goa.py -> build/lib.linux-ppc64le-cpython-313/prody/database copying prody/database/pfam.py -> build/lib.linux-ppc64le-cpython-313/prody/database copying prody/database/quartataweb.py -> build/lib.linux-ppc64le-cpython-313/prody/database copying prody/database/uniprot.py -> build/lib.linux-ppc64le-cpython-313/prody/database creating build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/adaptive.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/analysis.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/anm.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/bbenm.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/bildfile.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/clustenm.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/compare.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/editing.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/entropy.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/essa.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/exanm.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/exgnm.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/functions.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/gamma.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/gnm.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/heatmapper.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/imanm.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/mechstiff.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/mode.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/modeset.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/nma.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/nmdfile.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/pca.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/perturb.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/plotting.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/rtb.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/sampling.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/signature.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics copying prody/dynamics/vmdfile.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics creating build/lib.linux-ppc64le-cpython-313/prody/ensemble copying prody/ensemble/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/ensemble copying prody/ensemble/conformation.py -> build/lib.linux-ppc64le-cpython-313/prody/ensemble copying prody/ensemble/ensemble.py -> build/lib.linux-ppc64le-cpython-313/prody/ensemble copying prody/ensemble/functions.py -> build/lib.linux-ppc64le-cpython-313/prody/ensemble copying prody/ensemble/pdbensemble.py -> build/lib.linux-ppc64le-cpython-313/prody/ensemble creating build/lib.linux-ppc64le-cpython-313/prody/kdtree copying prody/kdtree/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/kdtree copying prody/kdtree/kdtree.py -> build/lib.linux-ppc64le-cpython-313/prody/kdtree creating build/lib.linux-ppc64le-cpython-313/prody/measure copying prody/measure/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/measure copying prody/measure/contacts.py -> build/lib.linux-ppc64le-cpython-313/prody/measure copying prody/measure/measure.py -> build/lib.linux-ppc64le-cpython-313/prody/measure copying prody/measure/transform.py -> build/lib.linux-ppc64le-cpython-313/prody/measure creating build/lib.linux-ppc64le-cpython-313/prody/proteins copying prody/proteins/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins copying prody/proteins/blastpdb.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins copying prody/proteins/ciffile.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins copying prody/proteins/cifheader.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins copying prody/proteins/compare.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins copying prody/proteins/dssp.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins copying prody/proteins/emdfile.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins copying prody/proteins/fixer.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins copying prody/proteins/functions.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins copying prody/proteins/header.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins copying prody/proteins/localpdb.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins copying prody/proteins/pdbclusters.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins copying prody/proteins/pdbfile.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins copying prody/proteins/starfile.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins copying prody/proteins/stride.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins copying prody/proteins/waterbridges.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins copying prody/proteins/wwpdb.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins creating build/lib.linux-ppc64le-cpython-313/prody/sequence copying prody/sequence/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/sequence copying prody/sequence/analysis.py -> build/lib.linux-ppc64le-cpython-313/prody/sequence copying prody/sequence/msa.py -> build/lib.linux-ppc64le-cpython-313/prody/sequence copying prody/sequence/msafile.py -> build/lib.linux-ppc64le-cpython-313/prody/sequence copying prody/sequence/plotting.py -> build/lib.linux-ppc64le-cpython-313/prody/sequence copying prody/sequence/sequence.py -> build/lib.linux-ppc64le-cpython-313/prody/sequence creating build/lib.linux-ppc64le-cpython-313/prody/trajectory copying prody/trajectory/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/trajectory copying prody/trajectory/dcdfile.py -> build/lib.linux-ppc64le-cpython-313/prody/trajectory copying prody/trajectory/frame.py -> build/lib.linux-ppc64le-cpython-313/prody/trajectory copying prody/trajectory/psffile.py -> build/lib.linux-ppc64le-cpython-313/prody/trajectory copying prody/trajectory/trajbase.py -> build/lib.linux-ppc64le-cpython-313/prody/trajectory copying prody/trajectory/trajectory.py -> build/lib.linux-ppc64le-cpython-313/prody/trajectory copying prody/trajectory/trajfile.py -> build/lib.linux-ppc64le-cpython-313/prody/trajectory creating build/lib.linux-ppc64le-cpython-313/prody/chromatin copying prody/chromatin/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/chromatin copying prody/chromatin/cluster.py -> build/lib.linux-ppc64le-cpython-313/prody/chromatin copying prody/chromatin/functions.py -> build/lib.linux-ppc64le-cpython-313/prody/chromatin copying prody/chromatin/hic.py -> build/lib.linux-ppc64le-cpython-313/prody/chromatin copying prody/chromatin/norm.py -> build/lib.linux-ppc64le-cpython-313/prody/chromatin copying prody/chromatin/straw.py -> build/lib.linux-ppc64le-cpython-313/prody/chromatin creating build/lib.linux-ppc64le-cpython-313/prody/compounds copying prody/compounds/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/compounds copying prody/compounds/bird.py -> build/lib.linux-ppc64le-cpython-313/prody/compounds copying prody/compounds/ccd.py -> build/lib.linux-ppc64le-cpython-313/prody/compounds copying prody/compounds/functions.py -> build/lib.linux-ppc64le-cpython-313/prody/compounds copying prody/compounds/pdbligands.py -> build/lib.linux-ppc64le-cpython-313/prody/compounds creating build/lib.linux-ppc64le-cpython-313/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> build/lib.linux-ppc64le-cpython-313/prody/domain_decomposition creating build/lib.linux-ppc64le-cpython-313/prody/utilities copying prody/utilities/TreeConstruction.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities copying prody/utilities/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities copying prody/utilities/catchall.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities copying prody/utilities/checkers.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities copying prody/utilities/doctools.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities copying prody/utilities/drawtools.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities copying prody/utilities/eigtools.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities copying prody/utilities/laptools.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities copying prody/utilities/legacy.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities copying prody/utilities/logger.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities copying prody/utilities/misctools.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities copying prody/utilities/pathtools.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities copying prody/utilities/seqtools.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities copying prody/utilities/settings.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities creating build/lib.linux-ppc64le-cpython-313/prody/apps copying prody/apps/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/apps copying prody/apps/apptools.py -> build/lib.linux-ppc64le-cpython-313/prody/apps creating build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_clustenm.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps creating build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps creating build/lib.linux-ppc64le-cpython-313/prody/tests copying prody/tests/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests creating build/lib.linux-ppc64le-cpython-313/prody/tests/apps copying prody/tests/apps/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/apps creating build/lib.linux-ppc64le-cpython-313/prody/tests/atomic copying prody/tests/atomic/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_select.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/atomic creating build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles creating build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics creating build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble creating build/lib.linux-ppc64le-cpython-313/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/kdtree creating build/lib.linux-ppc64le-cpython-313/prody/tests/measure copying prody/tests/measure/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/measure copying prody/tests/measure/test_contacts.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/measure copying prody/tests/measure/test_measure.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/measure copying prody/tests/measure/test_transform.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/measure creating build/lib.linux-ppc64le-cpython-313/prody/tests/proteins copying prody/tests/proteins/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_header.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/proteins creating build/lib.linux-ppc64le-cpython-313/prody/tests/sequence copying prody/tests/sequence/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/sequence creating build/lib.linux-ppc64le-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/trajectory creating build/lib.linux-ppc64le-cpython-313/prody/tests/utilities copying prody/tests/utilities/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/utilities creating build/lib.linux-ppc64le-cpython-313/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> build/lib.linux-ppc64le-cpython-313/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> build/lib.linux-ppc64le-cpython-313/prody/utilities/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_h36.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_hex.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build/temp.linux-ppc64le-cpython-313 creating build/temp.linux-ppc64le-cpython-313/prody creating build/temp.linux-ppc64le-cpython-313/prody/dynamics gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/dynamics/rtbtools.c -o build/temp.linux-ppc64le-cpython-313/prody/dynamics/rtbtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-ppc64le-cpython-313/prody/dynamics/rtbtools.o -L/usr/lib64 -o build/lib.linux-ppc64le-cpython-313/prody/dynamics/rtbtools.cpython-313-powerpc64le-linux-gnu.so building 'prody.dynamics.smtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/dynamics/smtools.c -o build/temp.linux-ppc64le-cpython-313/prody/dynamics/smtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-ppc64le-cpython-313/prody/dynamics/smtools.o -L/usr/lib64 -o build/lib.linux-ppc64le-cpython-313/prody/dynamics/smtools.cpython-313-powerpc64le-linux-gnu.so building 'prody.sequence.msatools' extension creating build/temp.linux-ppc64le-cpython-313/prody/sequence gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/msatools.c -o build/temp.linux-ppc64le-cpython-313/prody/sequence/msatools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-ppc64le-cpython-313/prody/sequence/msatools.o -L/usr/lib64 -o build/lib.linux-ppc64le-cpython-313/prody/sequence/msatools.cpython-313-powerpc64le-linux-gnu.so building 'prody.sequence.msaio' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/msaio.c -o build/temp.linux-ppc64le-cpython-313/prody/sequence/msaio.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-ppc64le-cpython-313/prody/sequence/msaio.o -L/usr/lib64 -o build/lib.linux-ppc64le-cpython-313/prody/sequence/msaio.cpython-313-powerpc64le-linux-gnu.so building 'prody.sequence.seqtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/seqtools.c -o build/temp.linux-ppc64le-cpython-313/prody/sequence/seqtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-ppc64le-cpython-313/prody/sequence/seqtools.o -L/usr/lib64 -o build/lib.linux-ppc64le-cpython-313/prody/sequence/seqtools.cpython-313-powerpc64le-linux-gnu.so building 'prody.kdtree._CKDTree' extension creating build/temp.linux-ppc64le-cpython-313/prody/kdtree gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/kdtree/KDTree.c -o build/temp.linux-ppc64le-cpython-313/prody/kdtree/KDTree.o gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-ppc64le-cpython-313/prody/kdtree/KDTreemodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-ppc64le-cpython-313/prody/kdtree/KDTree.o build/temp.linux-ppc64le-cpython-313/prody/kdtree/KDTreemodule.o -L/usr/lib64 -o build/lib.linux-ppc64le-cpython-313/prody/kdtree/_CKDTree.cpython-313-powerpc64le-linux-gnu.so building 'prody.proteins.ccealign' extension creating build/temp.linux-ppc64le-cpython-313/prody/proteins creating build/temp.linux-ppc64le-cpython-313/prody/proteins/ccealign gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Iprody/utilities/tnt -I/usr/include/python3.13 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-ppc64le-cpython-313/prody/proteins/ccealign/ccealignmodule.o In file included from prody/utilities/tnt/tnt.h:41, from prody/proteins/ccealign/ccealignmodule.h:43, from prody/proteins/ccealign/ccealignmodule.cpp:38: In member function ‘TNT::Array1D::set_(double*, double*, double const&)’, inlined from ‘TNT::Array1D::Array1D(int, double const&)’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest(cePoint*, cePoint*, afp**, int, int, int)’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ~~~^~~ g++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-ppc64le-cpython-313/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-ppc64le-cpython-313/prody/proteins/ccealign.cpython-313-powerpc64le-linux-gnu.so In member function ‘set_’, inlined from ‘__ct ’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘__builtin_memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ^ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.RxxlRY + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + '[' /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build + mkdir /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT --prefix /usr running install /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64 creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13 creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody copying build/lib.linux-ppc64le-cpython-313/prody/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/acceptor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/angle.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/atom.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/atomgroup.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/bond.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/chain.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/crossterm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/dihedral.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/donor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/fields.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/flags.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/improper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/nbexclusion.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/pointer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/residue.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/segment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/selection.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-ppc64le-cpython-313/prody/atomic/subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-ppc64le-cpython-313/prody/database/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-ppc64le-cpython-313/prody/database/cath.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-ppc64le-cpython-313/prody/database/dali.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-ppc64le-cpython-313/prody/database/goa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-ppc64le-cpython-313/prody/database/pfam.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-ppc64le-cpython-313/prody/database/quartataweb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-ppc64le-cpython-313/prody/database/uniprot.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/adaptive.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/bbenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/bildfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/entropy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/essa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/exanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/exgnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/gamma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/heatmapper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/imanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/mechstiff.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/mode.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/modeset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/nma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/nmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/perturb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/rtb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/sampling.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/vmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/rtbtools.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/smtools.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-ppc64le-cpython-313/prody/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-ppc64le-cpython-313/prody/ensemble/conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-ppc64le-cpython-313/prody/ensemble/ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-ppc64le-cpython-313/prody/ensemble/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-ppc64le-cpython-313/prody/ensemble/pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree copying build/lib.linux-ppc64le-cpython-313/prody/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree copying build/lib.linux-ppc64le-cpython-313/prody/kdtree/kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree copying build/lib.linux-ppc64le-cpython-313/prody/kdtree/_CKDTree.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure copying build/lib.linux-ppc64le-cpython-313/prody/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure copying build/lib.linux-ppc64le-cpython-313/prody/measure/contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure copying build/lib.linux-ppc64le-cpython-313/prody/measure/measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure copying build/lib.linux-ppc64le-cpython-313/prody/measure/transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/blastpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/cifheader.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/emdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/fixer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/pdbclusters.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/starfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/stride.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/waterbridges.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-ppc64le-cpython-313/prody/proteins/ccealign.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-ppc64le-cpython-313/prody/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-ppc64le-cpython-313/prody/sequence/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-ppc64le-cpython-313/prody/sequence/msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-ppc64le-cpython-313/prody/sequence/msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-ppc64le-cpython-313/prody/sequence/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-ppc64le-cpython-313/prody/sequence/sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-ppc64le-cpython-313/prody/sequence/msatools.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-ppc64le-cpython-313/prody/sequence/msaio.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-ppc64le-cpython-313/prody/sequence/seqtools.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-ppc64le-cpython-313/prody/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-ppc64le-cpython-313/prody/trajectory/dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-ppc64le-cpython-313/prody/trajectory/frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-ppc64le-cpython-313/prody/trajectory/psffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-ppc64le-cpython-313/prody/trajectory/trajbase.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-ppc64le-cpython-313/prody/trajectory/trajectory.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-ppc64le-cpython-313/prody/trajectory/trajfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-ppc64le-cpython-313/prody/chromatin/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-ppc64le-cpython-313/prody/chromatin/cluster.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-ppc64le-cpython-313/prody/chromatin/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-ppc64le-cpython-313/prody/chromatin/hic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-ppc64le-cpython-313/prody/chromatin/norm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-ppc64le-cpython-313/prody/chromatin/straw.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-ppc64le-cpython-313/prody/compounds/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-ppc64le-cpython-313/prody/compounds/bird.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-ppc64le-cpython-313/prody/compounds/ccd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-ppc64le-cpython-313/prody/compounds/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-ppc64le-cpython-313/prody/compounds/pdbligands.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition copying build/lib.linux-ppc64le-cpython-313/prody/domain_decomposition/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition copying build/lib.linux-ppc64le-cpython-313/prody/domain_decomposition/spectrus.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-ppc64le-cpython-313/prody/utilities/TreeConstruction.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-ppc64le-cpython-313/prody/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-ppc64le-cpython-313/prody/utilities/catchall.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-ppc64le-cpython-313/prody/utilities/checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-ppc64le-cpython-313/prody/utilities/doctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-ppc64le-cpython-313/prody/utilities/drawtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-ppc64le-cpython-313/prody/utilities/eigtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-ppc64le-cpython-313/prody/utilities/laptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-ppc64le-cpython-313/prody/utilities/legacy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-ppc64le-cpython-313/prody/utilities/logger.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-ppc64le-cpython-313/prody/utilities/misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-ppc64le-cpython-313/prody/utilities/pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-ppc64le-cpython-313/prody/utilities/seqtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-ppc64le-cpython-313/prody/utilities/settings.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/utilities/datafiles/mod_res_map.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/utilities/datafiles/saxs_water.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/apptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/nmaoptions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_align.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_biomol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_blast.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_eda.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_energy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_coevol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_conserv.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_filter.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_merge.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_occupancy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_rankorder.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_refine.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_search.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests copying build/lib.linux-ppc64le-cpython-313/prody/tests/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-ppc64le-cpython-313/prody/tests/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-ppc64le-cpython-313/prody/tests/apps/test_prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-ppc64le-cpython-313/prody/tests/apps/test_prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-ppc64le-cpython-313/prody/tests/apps/test_prody_examples.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-ppc64le-cpython-313/prody/tests/apps/test_prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-ppc64le-cpython-313/prody/tests/apps/test_prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-ppc64le-cpython-313/prody/tests/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-ppc64le-cpython-313/prody/tests/atomic/test_atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-ppc64le-cpython-313/prody/tests/atomic/test_atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-ppc64le-cpython-313/prody/tests/atomic/test_fragment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-ppc64le-cpython-313/prody/tests/atomic/test_hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-ppc64le-cpython-313/prody/tests/atomic/test_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-ppc64le-cpython-313/prody/tests/atomic/test_subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb1ejg.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb1r19_dssp.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb1ubi.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb1ubi_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb2k39_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb2k39_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb2nwl-opm.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb3hsy.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb3mht.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb3o21.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb3p3w.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb4v8r_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb4v8r_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdbRTER.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/anm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/anm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/commute1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/exanm2nwl_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/exanm2nwl_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/gnm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/gnm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/hit1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/msa_Cys_knot_di.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pca2k39_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pca2k39_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/anm1ubi_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/exanm2nwl_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pca2k39_cov.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/rtb2gb1_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/rtb2gb1_project.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/dcd2k39_truncated.dcd -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/xmlSTI.xml -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/msa_Cys_knot.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/msa_Cys_knot.slx -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/msa_Cys_knot.sth -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/mmcif_6yfy.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/mmcif_6zu5.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics/test_editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics/test_enms.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics/test_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics/test_signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble/test_conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble/test_ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble/test_functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble/test_pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree copying build/lib.linux-ppc64le-cpython-313/prody/tests/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree copying build/lib.linux-ppc64le-cpython-313/prody/tests/kdtree/test_kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure copying build/lib.linux-ppc64le-cpython-313/prody/tests/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure copying build/lib.linux-ppc64le-cpython-313/prody/tests/measure/test_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure copying build/lib.linux-ppc64le-cpython-313/prody/tests/measure/test_measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure copying build/lib.linux-ppc64le-cpython-313/prody/tests/measure/test_transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-ppc64le-cpython-313/prody/tests/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-ppc64le-cpython-313/prody/tests/proteins/test_ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-ppc64le-cpython-313/prody/tests/proteins/test_dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-ppc64le-cpython-313/prody/tests/proteins/test_header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-ppc64le-cpython-313/prody/tests/proteins/test_localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-ppc64le-cpython-313/prody/tests/proteins/test_pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-ppc64le-cpython-313/prody/tests/proteins/test_wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-ppc64le-cpython-313/prody/tests/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-ppc64le-cpython-313/prody/tests/sequence/test_analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-ppc64le-cpython-313/prody/tests/sequence/test_msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-ppc64le-cpython-313/prody/tests/sequence/test_msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-ppc64le-cpython-313/prody/tests/sequence/test_sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-ppc64le-cpython-313/prody/tests/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-ppc64le-cpython-313/prody/tests/trajectory/test_dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-ppc64le-cpython-313/prody/tests/trajectory/test_frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-ppc64le-cpython-313/prody/tests/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-ppc64le-cpython-313/prody/tests/utilities/test_checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-ppc64le-cpython-313/prody/tests/utilities/test_misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-ppc64le-cpython-313/prody/tests/utilities/test_pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/acceptor.py to acceptor.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/angle.py to angle.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atom.py to atom.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atomgroup.py to atomgroup.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atomic.py to atomic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atommap.py to atommap.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/bond.py to bond.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/chain.py to chain.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/crossterm.py to crossterm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/dihedral.py to dihedral.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/donor.py to donor.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/fields.py to fields.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/flags.py to flags.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/hierview.py to hierview.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/improper.py to improper.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/pointer.py to pointer.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/residue.py to residue.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/segment.py to segment.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/select.py to select.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/selection.py to selection.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/subset.py to subset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/cath.py to cath.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/dali.py to dali.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/goa.py to goa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/pfam.py to pfam.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/quartataweb.py to quartataweb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/uniprot.py to uniprot.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/adaptive.py to adaptive.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/analysis.py to analysis.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/anm.py to anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/bbenm.py to bbenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/bildfile.py to bildfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/clustenm.py to clustenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/compare.py to compare.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/editing.py to editing.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/entropy.py to entropy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/essa.py to essa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/exanm.py to exanm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/exgnm.py to exgnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/gamma.py to gamma.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/gnm.py to gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/imanm.py to imanm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/mode.py to mode.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/modeset.py to modeset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/nma.py to nma.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/pca.py to pca.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/perturb.py to perturb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/plotting.py to plotting.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/rtb.py to rtb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/sampling.py to sampling.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/signature.py to signature.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/conformation.py to conformation.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/ensemble.py to ensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree/kdtree.py to kdtree.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/contacts.py to contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/measure.py to measure.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/transform.py to transform.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/blastpdb.py to blastpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/ciffile.py to ciffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/cifheader.py to cifheader.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/compare.py to compare.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/dssp.py to dssp.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/emdfile.py to emdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/fixer.py to fixer.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/header.py to header.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py to localpdb.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/pdbfile.py to pdbfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/starfile.py to starfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/stride.py to stride.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/waterbridges.py to waterbridges.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/wwpdb.py to wwpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/analysis.py to analysis.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/msa.py to msa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/msafile.py to msafile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/plotting.py to plotting.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/sequence.py to sequence.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/frame.py to frame.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/psffile.py to psffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/trajbase.py to trajbase.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/trajectory.py to trajectory.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/trajfile.py to trajfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/cluster.py to cluster.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/hic.py to hic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/norm.py to norm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/straw.py to straw.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/bird.py to bird.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/ccd.py to ccd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/pdbligands.py to pdbligands.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/catchall.py to catchall.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/checkers.py to checkers.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/doctools.py to doctools.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/drawtools.py to drawtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/eigtools.py to eigtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/laptools.py to laptools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/legacy.py to legacy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/logger.py to logger.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/misctools.py to misctools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/pathtools.py to pathtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/seqtools.py to seqtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/settings.py to settings.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/apptools.py to apptools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_clustenm.py to prody_clustenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_select.py to test_select.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_measure.py to test_measure.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_transform.py to test_transform.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_header.py to test_header.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-313.pyc writing byte-compilation script '/tmp/tmpkqfucr_u.py' /usr/bin/python3 /tmp/tmpkqfucr_u.py /usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' removing /tmp/tmpkqfucr_u.py running install_egg_info running egg_info creating ProDy.egg-info writing ProDy.egg-info/PKG-INFO writing dependency_links to ProDy.egg-info/dependency_links.txt writing entry points to ProDy.egg-info/entry_points.txt writing requirements to ProDy.egg-info/requires.txt writing top-level names to ProDy.egg-info/top_level.txt writing manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'prody/*/*/*.c' warning: no files found matching 'prody/*/*.cpp' warning: no files found matching 'prody/utilities/datafiles/*.txt' adding license file 'LICENSE.rst' writing manifest file 'ProDy.egg-info/SOURCES.txt' Copying ProDy.egg-info to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ProDy-2.4.1-py3.13.egg-info running install_scripts Installing evol script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin Installing prody script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + rm -rfv /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/__pycache__ + mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + rm -f /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody + cd scripts + cp -pr ./prody ./python3.13-prody + cp -pr ./evol ./python3.13-evol + sed -i '1s=^#!/usr/bin/\(python\|env python\)[0-9.]*=#!/usr/bin/python3=' ./prody ./evol ./python3.13-prody ./python3.13-evol + for i in prody-3.13 + touch -r ./python3.13-prody prody-3.13 + install -p prody-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + ln -sf /usr/bin/python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody-3.13 + for i in evol-3.13 + touch -r ./python3.13-evol evol-3.13 + install -p evol-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + ln -sf /usr/bin/python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol-3.13 + cd .. + /usr/bin/find-debuginfo -j5 --strict-build-id -m -i --build-id-seed 2.4.1-7.fc42 --unique-debug-suffix -2.4.1-7.fc42.ppc64le --unique-debug-src-base ProDy-2.4.1-7.fc42.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1 find-debuginfo: starting Extracting debug info from 7 files DWARF-compressing 7 files sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/ProDy-2.4.1-7.fc42.ppc64le 464 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j5 Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13 using python3.13 /usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j5 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/acceptor.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/angle.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atommap.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/bond.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/dihedral.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atom.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/chain.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/crossterm.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/selection.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/donor.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/functions.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/subset.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/fields.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/fields.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/residue.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/pointer.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/segment.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/hierview.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/improper.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/flags.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/nbexclusion.cpython-313.pyc: rewriting 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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/pfam.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/cath.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/uniprot.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/dali.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/quartataweb.cpython-313.pyc: 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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_checkers.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_pathtools.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_analysis.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__pycache__/hic.cpython-313.pyc: replacing with normalized version Scanned 89 directories and 714 files, processed 233 inodes, 233 modified (52 replaced + 181 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS/rpm-debuginfo.specpart Processing files: python3-ProDy-2.4.1-7.fc42.ppc64le Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.2GkHg7 + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd ProDy-2.4.1 + DOCDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/README.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.YBQatF + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd ProDy-2.4.1 + LICENSEDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/LICENSE.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol warning: absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody Provides: ProDy = 0:2.4.1-7.fc42 python-ProDy = 2.4.1-7.fc42 python3-ProDy = 2.4.1-7.fc42 python3-ProDy(ppc-64) = 2.4.1-7.fc42 python3.13-ProDy = 2.4.1-7.fc42 python3.13dist(prody) = 2.4.1 python3dist(prody) = 2.4.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.13 python3.13dist(biopython) python3.13dist(numpy) >= 1.10 python3.13dist(pyparsing) python3.13dist(scipy) python3.13dist(setuptools) Obsoletes: python-ProDy < 2.4.1-7.fc42 Processing files: ProDy-debugsource-2.4.1-7.fc42.ppc64le Provides: ProDy-debugsource = 2.4.1-7.fc42 ProDy-debugsource(ppc-64) = 2.4.1-7.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-ProDy-debuginfo-2.4.1-7.fc42.ppc64le Provides: debuginfo(build-id) = 03152056497299f88cbec813752bd8c1f2a87a25 debuginfo(build-id) = 39bc7f4b867dd92c89668a258abfdc55e07dd5ee debuginfo(build-id) = 4c9cc83e0c6e473ee090e327d8f59c3f7bee7894 debuginfo(build-id) = 59804c9e1f766438d2f6e343a24f5ab435fc3fa8 debuginfo(build-id) = bb800b59d37a714208dd4c5728cea1e6c2e000d3 debuginfo(build-id) = e71e8101104224d02625e9c1b63b6fa3f77cf886 debuginfo(build-id) = fb185d8f75153903c8ab21c2c6d76a16c461295b python-ProDy-debuginfo = 2.4.1-7.fc42 python3-ProDy-debuginfo = 2.4.1-7.fc42 python3-ProDy-debuginfo(ppc-64) = 2.4.1-7.fc42 python3.13-ProDy-debuginfo = 2.4.1-7.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: ProDy-debugsource(ppc-64) = 2.4.1-7.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT Wrote: /builddir/build/RPMS/ProDy-debugsource-2.4.1-7.fc42.ppc64le.rpm Wrote: /builddir/build/RPMS/python3-ProDy-debuginfo-2.4.1-7.fc42.ppc64le.rpm Wrote: /builddir/build/RPMS/python3-ProDy-2.4.1-7.fc42.ppc64le.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.PQQ50e + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + test -d /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build + rm -rf /builddir/build/BUILD/ProDy-2.4.1-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody Finish: rpmbuild ProDy-2.4.1-7.fc42.src.rpm Finish: build phase for ProDy-2.4.1-7.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-ppc64le-1725633340.569456/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-7.fc42.src.rpm) Config(child) 2 minutes 51 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "ProDy", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "src" }, { "name": "ProDy-debugsource", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "ppc64le" }, { "name": "python3-ProDy", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "ppc64le" }, { "name": "python3-ProDy-debuginfo", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "ppc64le" } ] } RPMResults finished