Warning: Permanently added '54.204.220.35' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7989575-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 0.73 PID: 7713 Logging PID: 7714 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7989575, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'ee255563984fcb72a27985f21524dd27d5aa80ad', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.10.1:pr:3/ProDy', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'ProDy', 'package_version': '2.4.1-7', 'project_dirname': 'python3-scipy-1.10.1:pr:3', 'project_name': 'python3-scipy-1.10.1', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/python3-scipy-1.10.1/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/python3-scipy-1.10.1--https://src.fedoraproject.org/user/msuchy', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/msuchy', 'tags': [], 'task_id': '7989575-fedora-rawhide-aarch64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.10.1:pr:3/ProDy /var/lib/copr-rpmbuild/workspace/workdir-nbxfc571/ProDy --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.10.1:pr:3/ProDy', '/var/lib/copr-rpmbuild/workspace/workdir-nbxfc571/ProDy', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-nbxfc571/ProDy'... Running: git checkout ee255563984fcb72a27985f21524dd27d5aa80ad -- cmd: ['git', 'checkout', 'ee255563984fcb72a27985f21524dd27d5aa80ad', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-nbxfc571/ProDy rc: 0 stdout: stderr: Note: switching to 'ee255563984fcb72a27985f21524dd27d5aa80ad'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at ee25556 automatic import of ProDy Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-nbxfc571/ProDy rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading ProDy-2.4.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o ProDy-2.4.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/python3-scipy-1.10.1:pr:3/ProDy/ProDy-2.4.1.tar.gz/md5/ed3fa7549c21d8c68ed832b970952fe4/ProDy-2.4.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated 100 25.9M 100 25.9M 0 0 225M 0 --:--:-- --:--:-- --:--:-- 227M INFO: Reading stdout from command: md5sum ProDy-2.4.1.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-nbxfc571/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-nbxfc571/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725633450.217053 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-nbxfc571/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-nbxfc571/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725633450.217053 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-nbxfc571/ProDy/ProDy.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1725633450.217053/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1725633450.217053/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/c815647eb040e2c0c0bc230700c11f666a0afb0b4a5071f95d85846a557b1a43/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/c815647eb040e2c0c0bc230700c11f666a0afb0b4a5071f95d85846a557b1a43/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1725633450.217053/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-6.fc41.aarch64 rpm-sequoia-1.7.0-2.fc41.aarch64 dnf5-5.2.5.0-2.fc41.aarch64 dnf5-plugins-5.2.5.0-2.fc41.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 33.8 MiB/s | 20.6 MiB | 00m01s Copr repository 100% | 2.6 MiB/s | 291.3 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 57.5 MiB/s | 14.1 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 5.2.32-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.3 MiB bzip2 aarch64 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 427.6 KiB coreutils aarch64 9.5-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20.8 MiB cpio aarch64 2.15-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB diffutils aarch64 3.10-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB fedora-release-common noarch 42-0.3 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.4 KiB findutils aarch64 1:4.10.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB gawk aarch64 5.3.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.2 MiB glibc-minimal-langpack aarch64 2.40.9000-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B grep aarch64 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.1 MiB debugedit aarch64 5.0-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 499.2 KiB dwz aarch64 0.15-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 386.8 KiB ed aarch64 1.20.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 282.8 KiB efi-srpm-macros noarch 5-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils aarch64 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 MiB elfutils-debuginfod-client aarch64 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 396.9 KiB elfutils-default-yama-scope noarch 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf aarch64 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB elfutils-libs aarch64 0.191-8.fc41 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aarch64 4.2.1-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 818.9 KiB ncurses-base noarch 6.5-2.20240629.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.3 KiB ncurses-libs aarch64 6.5-2.20240629.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB ocaml-srpm-macros noarch 10-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B openldap aarch64 2.6.8-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 952.3 KiB openssl-libs aarch64 1:3.2.2-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 MiB p11-kit aarch64 0.25.5-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB p11-kit-trust aarch64 0.25.5-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 655.6 KiB package-notes-srpm-macros noarch 0.5-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam aarch64 1.6.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.0 MiB pam-libs aarch64 1.6.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 607.3 KiB pcre2 aarch64 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 905.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-56.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf aarch64 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 240.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB pkgconf-pkg-config aarch64 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 990.0 B popt aarch64 1.19-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 272.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.14.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.7.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline aarch64 8.2-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 753.3 KiB rpm aarch64 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.9 MiB rpm-build-libs aarch64 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262.7 KiB rpm-libs aarch64 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 797.9 KiB rpm-sequoia aarch64 1.7.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB rust-srpm-macros noarch 26.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs aarch64 3.46.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB systemd-libs aarch64 256.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB util-linux-core aarch64 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.2 MiB xxhash-libs aarch64 0.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 212.3 KiB xz-libs aarch64 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 266.4 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip aarch64 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB zlib-ng-compat aarch64 2.1.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 261.8 KiB zstd aarch64 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 52 MiB. Need to download 52 MiB. After this operation 302 MiB will be used (install 302 MiB, remove 0 B). [ 1/153] bzip2-0:1.0.8-19.fc41.aarch64 100% | 2.0 MiB/s | 52.4 KiB | 00m00s [ 2/153] bash-0:5.2.32-2.fc42.aarch64 100% | 59.1 MiB/s | 1.8 MiB | 00m00s [ 3/153] coreutils-0:9.5-9.fc42.aarch6 100% | 35.5 MiB/s | 1.1 MiB | 00m00s [ 4/153] cpio-0:2.15-2.fc41.aarch64 100% | 39.7 MiB/s | 284.8 KiB | 00m00s [ 5/153] fedora-release-common-0:42-0. 100% | 5.6 MiB/s | 23.0 KiB | 00m00s [ 6/153] diffutils-0:3.10-8.fc41.aarch 100% | 55.1 MiB/s | 394.7 KiB | 00m00s [ 7/153] findutils-1:4.10.0-4.fc41.aar 100% | 88.8 MiB/s | 545.3 KiB | 00m00s [ 8/153] glibc-minimal-langpack-0:2.40 100% | 16.9 MiB/s | 120.9 KiB | 00m00s [ 9/153] grep-0:3.11-9.fc41.aarch64 100% | 35.1 MiB/s | 287.8 KiB | 00m00s [ 10/153] gzip-0:1.13-2.fc41.aarch64 100% | 31.8 MiB/s | 163.0 KiB | 00m00s [ 11/153] gawk-0:5.3.0-4.fc41.aarch64 100% | 74.7 MiB/s | 1.0 MiB | 00m00s [ 12/153] info-0:7.1-3.fc41.aarch64 100% | 35.4 MiB/s | 181.3 KiB | 00m00s [ 13/153] patch-0:2.7.6-25.fc41.aarch64 100% | 31.4 MiB/s | 128.8 KiB | 00m00s [ 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00m00s [ 27/153] audit-libs-0:4.0.2-1.fc41.aar 100% | 24.7 MiB/s | 126.6 KiB | 00m00s [ 28/153] authselect-libs-0:1.5.0-7.fc4 100% | 40.0 MiB/s | 204.9 KiB | 00m00s [ 29/153] libcap-ng-0:0.8.5-3.fc41.aarc 100% | 10.7 MiB/s | 32.8 KiB | 00m00s [ 30/153] libblkid-0:2.40.2-8.fc42.aarc 100% | 30.3 MiB/s | 124.3 KiB | 00m00s [ 31/153] libfdisk-0:2.40.2-8.fc42.aarc 100% | 38.0 MiB/s | 155.7 KiB | 00m00s [ 32/153] libmount-0:2.40.2-8.fc42.aarc 100% | 37.7 MiB/s | 154.6 KiB | 00m00s [ 33/153] libselinux-0:3.7-5.fc41.aarch 100% | 21.5 MiB/s | 87.9 KiB | 00m00s [ 34/153] libsmartcols-0:2.40.2-8.fc42. 100% | 20.2 MiB/s | 82.9 KiB | 00m00s [ 35/153] libuuid-0:2.40.2-8.fc42.aarch 100% | 9.6 MiB/s | 29.5 KiB | 00m00s [ 36/153] ncurses-libs-0:6.5-2.20240629 100% | 79.7 MiB/s | 326.5 KiB | 00m00s [ 37/153] pam-0:1.6.1-6.fc42.aarch64 100% | 86.0 MiB/s | 528.5 KiB | 00m00s [ 38/153] pam-libs-0:1.6.1-6.fc42.aarch 100% | 14.0 MiB/s | 57.3 KiB | 00m00s [ 39/153] readline-0:8.2-11.fc42.aarch6 100% | 34.6 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debugedit-0:5.0-17.fc41.aarch 100% | 25.8 MiB/s | 79.4 KiB | 00m00s [ 53/153] elfutils-libelf-0:0.191-8.fc4 100% | 40.6 MiB/s | 207.7 KiB | 00m00s [ 54/153] elfutils-0:0.191-8.fc41.aarch 100% | 57.6 MiB/s | 531.1 KiB | 00m00s [ 55/153] file-0:5.45-7.fc41.aarch64 100% | 12.1 MiB/s | 49.5 KiB | 00m00s [ 56/153] libarchive-0:3.7.4-3.fc41.aar 100% | 65.7 MiB/s | 403.8 KiB | 00m00s [ 57/153] pkgconf-pkg-config-0:2.3.0-1. 100% | 2.4 MiB/s | 10.0 KiB | 00m00s [ 58/153] popt-0:1.19-7.fc41.aarch64 100% | 19.3 MiB/s | 59.4 KiB | 00m00s [ 59/153] rpm-0:4.19.93-1.fc42.aarch64 100% | 85.0 MiB/s | 522.1 KiB | 00m00s [ 60/153] rpm-build-libs-0:4.19.93-1.fc 100% | 18.7 MiB/s | 95.7 KiB | 00m00s [ 61/153] rpm-libs-0:4.19.93-1.fc42.aar 100% | 49.3 MiB/s | 303.0 KiB | 00m00s [ 62/153] binutils-0:2.43.1-1.fc42.aarc 100% | 174.6 MiB/s | 6.8 MiB | 00m00s [ 63/153] zstd-0:1.5.6-2.fc41.aarch64 100% | 34.3 MiB/s | 456.8 KiB | 00m00s [ 64/153] curl-0:8.9.1-3.fc42.aarch64 100% | 33.8 MiB/s | 311.7 KiB | 00m00s [ 65/153] ansible-srpm-macros-0:1-16.fc 100% | 5.1 MiB/s | 20.8 KiB | 00m00s [ 66/153] build-reproducibility-srpm-ma 100% | 3.5 MiB/s | 10.6 KiB | 00m00s [ 67/153] dwz-0:0.15-7.fc41.aarch64 100% | 33.3 MiB/s | 136.3 KiB | 00m00s [ 68/153] efi-srpm-macros-0:5-12.fc41.n 100% | 7.3 MiB/s | 22.4 KiB | 00m00s [ 69/153] fonts-srpm-macros-1:2.0.5-17. 100% | 8.8 MiB/s | 27.0 KiB | 00m00s [ 70/153] forge-srpm-macros-0:0.3.2-1.f 100% | 6.4 MiB/s | 19.7 KiB | 00m00s [ 71/153] fpc-srpm-macros-0:1.3-13.fc41 100% | 3.9 MiB/s | 8.0 KiB | 00m00s [ 72/153] ghc-srpm-macros-0:1.9.1-2.fc4 100% | 2.9 MiB/s | 9.1 KiB | 00m00s [ 73/153] gnat-srpm-macros-0:6-6.fc41.n 100% | 4.4 MiB/s | 9.0 KiB | 00m00s [ 74/153] go-srpm-macros-0:3.6.0-3.fc41 100% | 9.1 MiB/s | 28.0 KiB | 00m00s [ 75/153] lua-srpm-macros-0:1-14.fc41.n 100% | 2.9 MiB/s | 8.9 KiB | 00m00s [ 76/153] kernel-srpm-macros-0:1.0-24.f 100% | 2.4 MiB/s | 9.9 KiB | 00m00s [ 77/153] ocaml-srpm-macros-0:10-3.fc41 100% | 3.0 MiB/s | 9.2 KiB | 00m00s [ 78/153] openblas-srpm-macros-0:2-18.f 100% | 2.5 MiB/s | 7.7 KiB | 00m00s [ 79/153] package-notes-srpm-macros-0:0 100% | 2.4 MiB/s | 9.8 KiB | 00m00s [ 80/153] perl-srpm-macros-0:1-56.fc41. 100% | 2.1 MiB/s | 8.5 KiB | 00m00s [ 81/153] pyproject-srpm-macros-0:1.14. 100% | 4.4 MiB/s | 13.4 KiB | 00m00s [ 82/153] python-srpm-macros-0:3.13-3.f 100% | 7.7 MiB/s | 23.7 KiB | 00m00s [ 83/153] qt5-srpm-macros-0:5.15.15-1.f 100% | 2.9 MiB/s | 8.9 KiB | 00m00s [ 84/153] qt6-srpm-macros-0:6.7.2-3.fc4 100% | 2.2 MiB/s | 9.1 KiB | 00m00s [ 85/153] rust-srpm-macros-0:26.3-3.fc4 100% | 3.0 MiB/s | 12.1 KiB | 00m00s [ 86/153] zig-srpm-macros-0:1-3.fc41.no 100% | 2.0 MiB/s | 8.1 KiB | 00m00s [ 87/153] zip-0:3.0-41.fc41.aarch64 100% | 51.5 MiB/s | 263.7 KiB | 00m00s [ 88/153] pkgconf-0:2.3.0-1.fc42.aarch6 100% | 14.7 MiB/s | 45.2 KiB | 00m00s [ 89/153] pkgconf-m4-0:2.3.0-1.fc42.noa 100% | 4.7 MiB/s | 14.3 KiB | 00m00s [ 90/153] libpkgconf-0:2.3.0-1.fc42.aar 100% | 9.4 MiB/s | 38.4 KiB | 00m00s [ 91/153] ed-0:1.20.2-2.fc41.aarch64 100% | 15.9 MiB/s | 81.2 KiB | 00m00s [ 92/153] authselect-0:1.5.0-7.fc41.aar 100% | 23.0 MiB/s | 141.2 KiB | 00m00s [ 93/153] gdbm-1:1.23-7.fc41.aarch64 100% | 28.7 MiB/s | 147.0 KiB | 00m00s [ 94/153] gdbm-libs-1:1.23-7.fc41.aarch 100% | 13.7 MiB/s | 56.3 KiB | 00m00s [ 95/153] libnsl2-0:2.0.1-2.fc41.aarch6 100% | 9.8 MiB/s | 30.1 KiB | 00m00s [ 96/153] libpwquality-0:1.4.5-11.fc41. 100% | 26.6 MiB/s | 109.0 KiB | 00m00s [ 97/153] libtirpc-0:1.3.5-0.fc41.aarch 100% | 31.1 MiB/s | 95.7 KiB | 00m00s [ 98/153] crypto-policies-0:20240828-1. 100% | 11.4 MiB/s | 69.9 KiB | 00m00s [ 99/153] ca-certificates-0:2024.2.68_v 100% | 70.7 MiB/s | 868.2 KiB | 00m00s [100/153] ncurses-base-0:6.5-2.20240629 100% | 12.5 MiB/s | 63.8 KiB | 00m00s [101/153] openssl-libs-1:3.2.2-5.fc41.a 100% | 115.0 MiB/s | 2.2 MiB | 00m00s [102/153] libcom_err-0:1.47.1-3.fc41.aa 100% | 8.7 MiB/s | 26.7 KiB | 00m00s [103/153] krb5-libs-0:1.21.3-2.fc41.aar 100% | 105.8 MiB/s | 758.3 KiB | 00m00s [104/153] pcre2-0:10.44-1.fc41.1.aarch6 100% | 55.4 MiB/s | 227.0 KiB | 00m00s [105/153] libsepol-0:3.7-2.fc41.aarch64 100% | 63.8 MiB/s | 326.6 KiB | 00m00s [106/153] cracklib-0:2.9.11-6.fc41.aarc 100% | 20.1 MiB/s | 82.3 KiB | 00m00s [107/153] libzstd-0:1.5.6-2.fc41.aarch6 100% | 56.2 MiB/s | 288.0 KiB | 00m00s [108/153] libxml2-0:2.12.8-2.fc41.aarch 100% | 94.6 MiB/s | 677.8 KiB | 00m00s [109/153] lz4-libs-0:1.10.0-1.fc41.aarc 100% | 14.1 MiB/s | 72.3 KiB | 00m00s [110/153] keyutils-libs-0:1.6.3-4.fc41. 100% | 7.8 MiB/s | 31.9 KiB | 00m00s [111/153] basesystem-0:11-21.fc41.noarc 100% | 2.4 MiB/s | 7.4 KiB | 00m00s [112/153] libverto-0:0.3.2-9.fc41.aarch 100% | 6.8 MiB/s | 20.9 KiB | 00m00s [113/153] gmp-1:6.3.0-2.fc41.aarch64 100% | 52.7 MiB/s | 270.1 KiB | 00m00s [114/153] mpfr-0:4.2.1-5.fc41.aarch64 100% | 52.9 MiB/s | 324.8 KiB | 00m00s [115/153] filesystem-0:3.18-23.fc41.aar 100% | 107.0 MiB/s | 1.1 MiB | 00m00s [116/153] fedora-repos-0:42-0.1.noarch 100% | 3.0 MiB/s | 9.2 KiB | 00m00s [117/153] file-libs-0:5.45-7.fc41.aarch 100% | 93.0 MiB/s | 761.6 KiB | 00m00s [118/153] elfutils-debuginfod-client-0: 100% | 9.0 MiB/s | 36.9 KiB | 00m00s [119/153] elfutils-libs-0:0.191-8.fc41. 100% | 42.0 MiB/s | 258.1 KiB | 00m00s [120/153] libstdc++-0:14.2.1-1.fc42.aar 100% | 90.2 MiB/s | 831.2 KiB | 00m00s [121/153] p11-kit-0:0.25.5-3.fc41.aarch 100% | 56.8 MiB/s | 465.2 KiB | 00m00s [122/153] coreutils-common-0:9.5-9.fc42 100% | 123.3 MiB/s | 2.1 MiB | 00m00s [123/153] p11-kit-trust-0:0.25.5-3.fc41 100% | 14.5 MiB/s | 133.8 KiB | 00m00s [124/153] add-determinism-0:0.3.6-1.fc4 100% | 96.6 MiB/s | 791.3 KiB | 00m00s [125/153] alternatives-0:1.30-1.fc41.aa 100% | 13.5 MiB/s | 41.5 KiB | 00m00s [126/153] jansson-0:2.13.1-10.fc41.aarc 100% | 14.9 MiB/s | 45.9 KiB | 00m00s [127/153] lua-libs-0:5.4.6-6.fc41.aarch 100% | 31.7 MiB/s | 129.8 KiB | 00m00s [128/153] rpm-sequoia-0:1.7.0-2.fc41.aa 100% | 104.2 MiB/s | 853.7 KiB | 00m00s [129/153] sqlite-libs-0:3.46.0-4.fc41.a 100% | 76.6 MiB/s | 705.6 KiB | 00m00s [130/153] libgomp-0:14.2.1-1.fc42.aarch 100% | 41.9 MiB/s | 343.0 KiB | 00m00s [131/153] pcre2-syntax-0:10.44-1.fc41.1 100% | 29.3 MiB/s | 149.9 KiB | 00m00s [132/153] libtasn1-0:4.19.0-9.fc41.aarc 100% | 23.8 MiB/s | 73.0 KiB | 00m00s [133/153] libffi-0:3.4.6-3.fc42.aarch64 100% | 9.4 MiB/s | 38.3 KiB | 00m00s [134/153] fedora-repos-rawhide-0:42-0.1 100% | 2.8 MiB/s | 8.7 KiB | 00m00s [135/153] fedora-gpg-keys-0:42-0.1.noar 100% | 24.1 MiB/s | 123.3 KiB | 00m00s [136/153] elfutils-default-yama-scope-0 100% | 4.0 MiB/s | 12.3 KiB | 00m00s [137/153] fedora-release-0:42-0.3.noarc 100% | 4.0 MiB/s | 12.2 KiB | 00m00s [138/153] xxhash-libs-0:0.8.2-3.fc41.aa 100% | 11.3 MiB/s | 34.6 KiB | 00m00s [139/153] fedora-release-identity-basic 100% | 4.2 MiB/s | 13.0 KiB | 00m00s [140/153] libcurl-0:8.9.1-3.fc42.aarch6 100% | 49.7 MiB/s | 355.9 KiB | 00m00s [141/153] libbrotli-0:1.1.0-5.fc41.aarc 100% | 56.3 MiB/s | 346.2 KiB | 00m00s [142/153] libidn2-0:2.3.7-2.fc41.aarch6 100% | 27.6 MiB/s | 113.0 KiB | 00m00s [143/153] libnghttp2-0:1.63.0-1.fc42.aa 100% | 18.7 MiB/s | 76.7 KiB | 00m00s [144/153] gdb-minimal-0:15.1-1.fc41.aar 100% | 165.0 MiB/s | 4.0 MiB | 00m00s [145/153] libpsl-0:0.21.5-4.fc41.aarch6 100% | 10.5 MiB/s | 64.4 KiB | 00m00s [146/153] libssh-0:0.11.1-1.fc42.aarch6 100% | 32.5 MiB/s | 233.0 KiB | 00m00s [147/153] openldap-0:2.6.8-5.fc41.aarch 100% | 35.1 MiB/s | 251.8 KiB | 00m00s [148/153] libevent-0:2.1.12-14.fc41.aar 100% | 35.5 MiB/s | 254.6 KiB | 00m00s [149/153] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 84.7 MiB/s | 780.2 KiB | 00m00s [150/153] libtool-ltdl-0:2.4.7-12.fc41. 100% | 7.0 MiB/s | 35.8 KiB | 00m00s [151/153] libssh-config-0:0.11.1-1.fc42 100% | 1.8 MiB/s | 9.4 KiB | 00m00s [152/153] publicsuffix-list-dafsa-0:202 100% | 19.0 MiB/s | 58.3 KiB | 00m00s [153/153] libunistring-0:1.1-8.fc41.aar 100% | 75.3 MiB/s | 539.8 KiB | 00m00s -------------------------------------------------------------------------------- [153/153] Total 100% | 148.1 MiB/s | 52.1 MiB | 00m00s Running transaction [ 1/155] Verify package files 100% | 746.0 B/s | 153.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.aarch64 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-23.fc41.aarch64 [ 2/155] Prepare transaction 100% | 2.5 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:14.2.1-1. 100% | 171.8 MiB/s | 351.9 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.2.1-1.fc42.aarch64 >>> Stop post-install scriptlet: libgcc-0:14.2.1-1.fc42.aarch64 [ 4/155] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 5/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/155] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 7/155] Installing fedora-gpg-keys-0: 100% | 33.6 MiB/s | 172.2 KiB | 00m00s [ 8/155] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/155] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/155] Installing fedora-release-com 100% | 23.1 MiB/s | 23.7 KiB | 00m00s [ 11/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/155] Installing setup-0:2.15.0-5.f 100% | 47.3 MiB/s | 726.1 KiB | 00m00s >>> Running post-install scriptlet: setup-0:2.15.0-5.fc41.noarch >>> Stop post-install scriptlet: setup-0:2.15.0-5.fc41.noarch [ 13/155] Installing filesystem-0:3.18- 100% | 2.2 MiB/s | 212.5 KiB | 00m00s [ 14/155] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 15/155] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB | 00m00s [ 16/155] Installing coreutils-common-0 100% | 294.5 MiB/s | 11.2 MiB | 00m00s [ 17/155] Installing ncurses-base-0:6.5 100% | 49.1 MiB/s | 351.7 KiB | 00m00s [ 18/155] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 19/155] Installing ncurses-libs-0:6.5 100% | 281.1 MiB/s | 2.2 MiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.40.9000-1.fc42.aarch64 >>> Stop pre-install scriptlet: glibc-0:2.40.9000-1.fc42.aarch64 warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 20/155] Installing glibc-0:2.40.9000- 100% | 250.4 MiB/s | 9.3 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.40.9000-1.fc42.aarch64 >>> Stop post-install scriptlet: glibc-0:2.40.9000-1.fc42.aarch64 [ 21/155] Installing bash-0:5.2.32-2.fc 100% | 307.9 MiB/s | 8.3 MiB | 00m00s >>> Running post-install scriptlet: bash-0:5.2.32-2.fc42.aarch64 >>> Stop post-install scriptlet: bash-0:5.2.32-2.fc42.aarch64 [ 22/155] Installing glibc-common-0:2.4 100% | 285.6 MiB/s | 2.6 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 23/155] Installing glibc-gconv-extra- 100% | 529.7 MiB/s | 49.3 MiB | 00m00s >>> Running post-install scriptlet: glibc-gconv-extra-0:2.40.9000-1.fc42.aarch64 >>> Stop post-install scriptlet: glibc-gconv-extra-0:2.40.9000-1.fc42.aarch64 [ 24/155] Installing zlib-ng-compat-0:2 100% | 256.4 MiB/s | 262.6 KiB | 00m00s [ 25/155] Installing xz-libs-1:5.6.2-2. 100% | 261.2 MiB/s | 267.5 KiB | 00m00s [ 26/155] Installing bzip2-libs-0:1.0.8 100% | 197.1 MiB/s | 201.9 KiB | 00m00s [ 27/155] Installing libuuid-0:2.40.2-8 100% | 194.0 MiB/s | 198.6 KiB | 00m00s [ 28/155] Installing readline-0:8.2-11. 100% | 245.9 MiB/s | 755.5 KiB | 00m00s [ 29/155] Installing popt-0:1.19-7.fc41 100% | 91.0 MiB/s | 279.5 KiB | 00m00s [ 30/155] Installing libblkid-0:2.40.2- 100% | 409.9 MiB/s | 419.7 KiB | 00m00s [ 31/155] Installing libattr-0:2.5.2-4. 100% | 192.9 MiB/s | 197.5 KiB | 00m00s [ 32/155] Installing libacl-0:2.3.2-2.f 100% | 192.3 MiB/s | 196.9 KiB | 00m00s [ 33/155] Installing libxcrypt-0:4.4.36 100% | 196.1 MiB/s | 401.7 KiB | 00m00s [ 34/155] Installing libzstd-0:1.5.6-2. 100% | 259.5 MiB/s | 797.3 KiB | 00m00s [ 35/155] Installing elfutils-libelf-0: 100% | 328.5 MiB/s | 1.3 MiB | 00m00s [ 36/155] Installing gmp-1:6.3.0-2.fc41 100% | 235.8 MiB/s | 724.2 KiB | 00m00s [ 37/155] Installing libstdc++-0:14.2.1 100% | 308.2 MiB/s | 2.8 MiB | 00m00s [ 38/155] Installing libeconf-0:0.6.2-3 100% | 202.9 MiB/s | 207.8 KiB | 00m00s [ 39/155] Installing gdbm-libs-1:1.23-7 100% | 417.7 MiB/s | 427.7 KiB | 00m00s [ 40/155] Installing mpfr-0:4.2.1-5.fc4 100% | 200.3 MiB/s | 820.5 KiB | 00m00s [ 41/155] Installing gawk-0:5.3.0-4.fc4 100% | 387.6 MiB/s | 4.3 MiB | 00m00s [ 42/155] Installing dwz-0:0.15-7.fc41. 100% | 189.5 MiB/s | 388.1 KiB | 00m00s [ 43/155] Installing unzip-0:6.0-64.fc4 100% | 356.5 MiB/s | 730.2 KiB | 00m00s [ 44/155] Installing file-libs-0:5.45-7 100% | 527.6 MiB/s | 10.0 MiB | 00m00s [ 45/155] Installing file-0:5.45-7.fc41 100% | 32.8 MiB/s | 269.0 KiB | 00m00s >>> Running pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42. >>> Stop pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.noa [ 46/155] Installing crypto-policies-0: 100% | 19.9 MiB/s | 163.2 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42 >>> Stop post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.no [ 47/155] Installing libcap-ng-0:0.8.5- 100% | 204.6 MiB/s | 419.1 KiB | 00m00s [ 48/155] Installing audit-libs-0:4.0.2 100% | 268.3 MiB/s | 549.6 KiB | 00m00s [ 49/155] Installing pam-libs-0:1.6.1-6 100% | 198.4 MiB/s | 609.5 KiB | 00m00s [ 50/155] Installing libcap-0:2.70-4.fc 100% | 344.0 MiB/s | 1.4 MiB | 00m00s [ 51/155] Installing systemd-libs-0:256 100% | 315.1 MiB/s | 2.5 MiB | 00m00s [ 52/155] Installing libsmartcols-0:2.4 100% | 282.9 MiB/s | 289.7 KiB | 00m00s [ 53/155] Installing libcom_err-0:1.47. 100% | 234.8 MiB/s | 240.4 KiB | 00m00s [ 54/155] Installing libsepol-0:3.7-2.f 100% | 284.8 MiB/s | 874.9 KiB | 00m00s [ 55/155] Installing pcre2-0:10.44-1.fc 100% | 295.2 MiB/s | 906.9 KiB | 00m00s [ 56/155] Installing libselinux-0:3.7-5 100% | 260.1 MiB/s | 266.3 KiB | 00m00s [ 57/155] Installing sed-0:4.9-3.fc41.a 100% | 164.3 MiB/s | 1.0 MiB | 00m00s [ 58/155] Installing grep-0:3.11-9.fc41 100% | 156.7 MiB/s | 1.1 MiB | 00m00s [ 59/155] Installing findutils-1:4.10.0 100% | 234.2 MiB/s | 2.1 MiB | 00m00s [ 60/155] Installing xz-1:5.6.2-2.fc41. 100% | 185.3 MiB/s | 1.5 MiB | 00m00s [ 61/155] Installing libmount-0:2.40.2- 100% | 236.8 MiB/s | 485.1 KiB | 00m00s [ 62/155] Installing lz4-libs-0:1.10.0- 100% | 256.5 MiB/s | 262.7 KiB | 00m00s [ 63/155] Installing alternatives-0:1.3 100% | 214.7 MiB/s | 219.9 KiB | 00m00s [ 64/155] Installing lua-libs-0:5.4.6-6 100% | 192.5 MiB/s | 394.3 KiB | 00m00s [ 65/155] Installing libtasn1-0:4.19.0- 100% | 139.4 MiB/s | 285.6 KiB | 00m00s [ 66/155] Installing libunistring-0:1.1 100% | 301.5 MiB/s | 1.8 MiB | 00m00s [ 67/155] Installing libidn2-0:2.3.7-2. 100% | 113.1 MiB/s | 463.1 KiB | 00m00s [ 68/155] Installing libpsl-0:0.21.5-4. 100% | 193.1 MiB/s | 197.7 KiB | 00m00s [ 69/155] Installing zstd-0:1.5.6-2.fc4 100% | 281.8 MiB/s | 1.7 MiB | 00m00s [ 70/155] Installing util-linux-core-0: 100% | 387.7 MiB/s | 6.2 MiB | 00m00s [ 71/155] Installing tar-2:1.35-4.fc41. 100% | 278.8 MiB/s | 3.1 MiB | 00m00s [ 72/155] Installing libsemanage-0:3.7- 100% | 118.3 MiB/s | 363.3 KiB | 00m00s [ 73/155] Installing shadow-utils-2:4.1 100% | 254.4 MiB/s | 7.4 MiB | 00m00s [ 74/155] Installing zip-0:3.0-41.fc41. 100% | 281.0 MiB/s | 1.1 MiB | 00m00s [ 75/155] Installing gdbm-1:1.23-7.fc41 100% | 227.9 MiB/s | 933.4 KiB | 00m00s [ 76/155] Installing cyrus-sasl-lib-0:2 100% | 345.2 MiB/s | 3.1 MiB | 00m00s [ 77/155] Installing libfdisk-0:2.40.2- 100% | 236.3 MiB/s | 483.9 KiB | 00m00s [ 78/155] Installing bzip2-0:1.0.8-19.f 100% | 211.0 MiB/s | 432.2 KiB | 00m00s [ 79/155] Installing libxml2-0:2.12.8-2 100% | 306.0 MiB/s | 2.1 MiB | 00m00s [ 80/155] Installing add-determinism-0: 100% | 290.5 MiB/s | 2.0 MiB | 00m00s [ 81/155] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 82/155] Installing sqlite-libs-0:3.46 100% | 259.8 MiB/s | 1.6 MiB | 00m00s [ 83/155] Installing ed-0:1.20.2-2.fc41 100% | 139.2 MiB/s | 285.1 KiB | 00m00s [ 84/155] Installing patch-0:2.7.6-25.f 100% | 191.5 MiB/s | 392.1 KiB | 00m00s [ 85/155] Installing elfutils-default-y 100% | 291.9 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.noar [ 86/155] Installing elfutils-libs-0:0. 100% | 229.5 MiB/s | 940.2 KiB | 00m00s [ 87/155] Installing cpio-0:2.15-2.fc41 100% | 203.4 MiB/s | 1.2 MiB | 00m00s [ 88/155] Installing diffutils-0:3.10-8 100% | 263.7 MiB/s | 2.1 MiB | 00m00s [ 89/155] Installing libpkgconf-0:2.3.0 100% | 194.6 MiB/s | 199.2 KiB | 00m00s [ 90/155] Installing pkgconf-0:2.3.0-1. 100% | 237.4 MiB/s | 243.1 KiB | 00m00s [ 91/155] Installing keyutils-libs-0:1. 100% | 222.5 MiB/s | 227.9 KiB | 00m00s [ 92/155] Installing libverto-0:0.3.2-9 100% | 194.7 MiB/s | 199.3 KiB | 00m00s [ 93/155] Installing jansson-0:2.13.1-1 100% | 216.7 MiB/s | 221.9 KiB | 00m00s [ 94/155] Installing libgomp-0:14.2.1-1 100% | 277.6 MiB/s | 568.5 KiB | 00m00s [ 95/155] Installing libffi-0:3.4.6-3.f 100% | 277.2 MiB/s | 283.8 KiB | 00m00s [ 96/155] Installing p11-kit-0:0.25.5-3 100% | 220.5 MiB/s | 2.6 MiB | 00m00s [ 97/155] Installing p11-kit-trust-0:0. 100% | 64.2 MiB/s | 657.4 KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.aarch64 >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.aarch64 [ 98/155] Installing openssl-libs-1:3.2 100% | 300.4 MiB/s | 7.2 MiB | 00m00s [ 99/155] Installing coreutils-0:9.5-9. 100% | 442.6 MiB/s | 20.8 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n >>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar [100/155] Installing ca-certificates-0: 100% | 2.4 MiB/s | 2.4 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41. >>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noa [101/155] Installing krb5-libs-0:1.21.3 100% | 257.4 MiB/s | 3.3 MiB | 00m00s [102/155] Installing libarchive-0:3.7.4 100% | 238.4 MiB/s | 976.6 KiB | 00m00s [103/155] Installing libtirpc-0:1.3.5-0 100% | 135.0 MiB/s | 276.5 KiB | 00m00s [104/155] Installing gzip-0:1.13-2.fc41 100% | 160.9 MiB/s | 494.4 KiB | 00m00s [105/155] Installing authselect-libs-0: 100% | 132.1 MiB/s | 946.8 KiB | 00m00s [106/155] Installing cracklib-0:2.9.11- 100% | 154.0 MiB/s | 946.3 KiB | 00m00s [107/155] Installing libpwquality-0:1.4 100% | 158.2 MiB/s | 1.1 MiB | 00m00s [108/155] Installing libnsl2-0:2.0.1-2. 100% | 109.0 MiB/s | 223.2 KiB | 00m00s [109/155] Installing pam-0:1.6.1-6.fc42 100% | 356.1 MiB/s | 11.0 MiB | 00m00s [110/155] Installing libssh-0:0.11.1-1. 100% | 212.1 MiB/s | 651.7 KiB | 00m00s [111/155] Installing rpm-sequoia-0:1.7. 100% | 287.1 MiB/s | 2.3 MiB | 00m00s [112/155] Installing rpm-libs-0:4.19.93 100% | 260.2 MiB/s | 799.5 KiB | 00m00s [113/155] Installing rpm-build-libs-0:4 100% | 257.4 MiB/s | 263.6 KiB | 00m00s [114/155] Installing libevent-0:2.1.12- 100% | 304.7 MiB/s | 1.5 MiB | 00m00s [115/155] Installing xxhash-libs-0:0.8. 100% | 208.7 MiB/s | 213.7 KiB | 00m00s [116/155] Installing libbrotli-0:1.1.0- 100% | 285.2 MiB/s | 1.1 MiB | 00m00s [117/155] Installing libnghttp2-0:1.63. 100% | 257.2 MiB/s | 263.3 KiB | 00m00s [118/155] Installing libtool-ltdl-0:2.4 100% | 218.1 MiB/s | 223.4 KiB | 00m00s [119/155] Installing openldap-0:2.6.8-5 100% | 233.4 MiB/s | 956.1 KiB | 00m00s [120/155] Installing libcurl-0:8.9.1-3. 100% | 279.8 MiB/s | 859.4 KiB | 00m00s [121/155] Installing elfutils-debuginfo 100% | 194.8 MiB/s | 398.9 KiB | 00m00s [122/155] Installing binutils-0:2.43.1- 100% | 329.9 MiB/s | 33.0 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.43.1-1.fc42.aarch64 >>> Stop post-install scriptlet: binutils-0:2.43.1-1.fc42.aarch64 [123/155] Installing elfutils-0:0.191-8 100% | 353.9 MiB/s | 5.0 MiB | 00m00s [124/155] Installing gdb-minimal-0:15.1 100% | 311.8 MiB/s | 11.8 MiB | 00m00s [125/155] Installing debugedit-0:5.0-17 100% | 245.1 MiB/s | 502.0 KiB | 00m00s [126/155] Installing curl-0:8.9.1-3.fc4 100% | 69.6 MiB/s | 926.7 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.93-1.fc42.aarch64 >>> Stop pre-install scriptlet: rpm-0:4.19.93-1.fc42.aarch64 [127/155] Installing rpm-0:4.19.93-1.fc 100% | 145.7 MiB/s | 3.4 MiB | 00m00s [128/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [129/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [130/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [131/155] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [132/155] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [133/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [134/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [135/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [136/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [137/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [138/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [139/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [140/155] Installing kernel-srpm-macros 100% | 2.3 MiB/s | 2.3 KiB | 00m00s [141/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [142/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [143/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [144/155] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.4 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 62.8 MiB/s | 192.9 KiB | 00m00s [150/155] Installing rpm-build-0:4.19.9 100% | 349.3 MiB/s | 1.4 MiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 353.2 MiB/s | 17.0 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-8.fc42.aarch64 >>> Stop post-install scriptlet: util-linux-0:2.40.2-8.fc42.aarch64 [153/155] Installing authselect-0:1.5.0 100% | 102.2 MiB/s | 313.9 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 122.2 MiB/s | 250.4 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [155/155] Installing info-0:7.1-3.fc41. 100% | 484.3 KiB/s | 614.0 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.aarch64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.aarch64 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.aarch64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.aarch64 >>> Running post-transaction scriptlet: rpm-0:4.19.93-1.fc42.aarch64 >>> Stop post-transaction scriptlet: rpm-0:4.19.93-1.fc42.aarch64 >>> Running trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.aarch64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.aarch64 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.aarch64 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.aarch64 Complete! Warning: skipped PGP checks for 153 packages from repository: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.aarch64 alternatives-1.30-1.fc41.aarch64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.aarch64 authselect-1.5.0-7.fc41.aarch64 authselect-libs-1.5.0-7.fc41.aarch64 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.aarch64 binutils-2.43.1-1.fc42.aarch64 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.aarch64 bzip2-libs-1.0.8-19.fc41.aarch64 ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch coreutils-9.5-9.fc42.aarch64 coreutils-common-9.5-9.fc42.aarch64 cpio-2.15-2.fc41.aarch64 cracklib-2.9.11-6.fc41.aarch64 crypto-policies-20240828-1.git5f66e81.fc42.noarch curl-8.9.1-3.fc42.aarch64 cyrus-sasl-lib-2.1.28-27.fc41.aarch64 debugedit-5.0-17.fc41.aarch64 diffutils-3.10-8.fc41.aarch64 dwz-0.15-7.fc41.aarch64 ed-1.20.2-2.fc41.aarch64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.aarch64 elfutils-debuginfod-client-0.191-8.fc41.aarch64 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.aarch64 elfutils-libs-0.191-8.fc41.aarch64 fedora-gpg-keys-42-0.1.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.1.noarch fedora-repos-rawhide-42-0.1.noarch file-5.45-7.fc41.aarch64 file-libs-5.45-7.fc41.aarch64 filesystem-3.18-23.fc41.aarch64 findutils-4.10.0-4.fc41.aarch64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.aarch64 gdb-minimal-15.1-1.fc41.aarch64 gdbm-1.23-7.fc41.aarch64 gdbm-libs-1.23-7.fc41.aarch64 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40.9000-1.fc42.aarch64 glibc-common-2.40.9000-1.fc42.aarch64 glibc-gconv-extra-2.40.9000-1.fc42.aarch64 glibc-minimal-langpack-2.40.9000-1.fc42.aarch64 gmp-6.3.0-2.fc41.aarch64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch grep-3.11-9.fc41.aarch64 gzip-1.13-2.fc41.aarch64 info-7.1-3.fc41.aarch64 jansson-2.13.1-10.fc41.aarch64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.aarch64 krb5-libs-1.21.3-2.fc41.aarch64 libacl-2.3.2-2.fc41.aarch64 libarchive-3.7.4-3.fc41.aarch64 libattr-2.5.2-4.fc41.aarch64 libblkid-2.40.2-8.fc42.aarch64 libbrotli-1.1.0-5.fc41.aarch64 libcap-2.70-4.fc41.aarch64 libcap-ng-0.8.5-3.fc41.aarch64 libcom_err-1.47.1-3.fc41.aarch64 libcurl-8.9.1-3.fc42.aarch64 libeconf-0.6.2-3.fc41.aarch64 libevent-2.1.12-14.fc41.aarch64 libfdisk-2.40.2-8.fc42.aarch64 libffi-3.4.6-3.fc42.aarch64 libgcc-14.2.1-1.fc42.aarch64 libgomp-14.2.1-1.fc42.aarch64 libidn2-2.3.7-2.fc41.aarch64 libmount-2.40.2-8.fc42.aarch64 libnghttp2-1.63.0-1.fc42.aarch64 libnsl2-2.0.1-2.fc41.aarch64 libpkgconf-2.3.0-1.fc42.aarch64 libpsl-0.21.5-4.fc41.aarch64 libpwquality-1.4.5-11.fc41.aarch64 libselinux-3.7-5.fc41.aarch64 libsemanage-3.7-2.fc41.aarch64 libsepol-3.7-2.fc41.aarch64 libsmartcols-2.40.2-8.fc42.aarch64 libssh-0.11.1-1.fc42.aarch64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-1.fc42.aarch64 libtasn1-4.19.0-9.fc41.aarch64 libtirpc-1.3.5-0.fc41.aarch64 libtool-ltdl-2.4.7-12.fc41.aarch64 libunistring-1.1-8.fc41.aarch64 libuuid-2.40.2-8.fc42.aarch64 libverto-0.3.2-9.fc41.aarch64 libxcrypt-4.4.36-7.fc41.aarch64 libxml2-2.12.8-2.fc41.aarch64 libzstd-1.5.6-2.fc41.aarch64 lua-libs-5.4.6-6.fc41.aarch64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.aarch64 mpfr-4.2.1-5.fc41.aarch64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.aarch64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.aarch64 openssl-libs-3.2.2-5.fc41.aarch64 p11-kit-0.25.5-3.fc41.aarch64 p11-kit-trust-0.25.5-3.fc41.aarch64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc42.aarch64 pam-libs-1.6.1-6.fc42.aarch64 patch-2.7.6-25.fc41.aarch64 pcre2-10.44-1.fc41.1.aarch64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.aarch64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.aarch64 popt-1.19-7.fc41.aarch64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.14.0-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.aarch64 redhat-rpm-config-294-1.fc42.noarch rpm-4.19.93-1.fc42.aarch64 rpm-build-4.19.93-1.fc42.aarch64 rpm-build-libs-4.19.93-1.fc42.aarch64 rpm-libs-4.19.93-1.fc42.aarch64 rpm-sequoia-1.7.0-2.fc41.aarch64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.aarch64 setup-2.15.0-5.fc41.noarch shadow-utils-4.15.1-9.fc41.aarch64 sqlite-libs-3.46.0-4.fc41.aarch64 systemd-libs-256.5-1.fc42.aarch64 tar-1.35-4.fc41.aarch64 unzip-6.0-64.fc41.aarch64 util-linux-2.40.2-8.fc42.aarch64 util-linux-core-2.40.2-8.fc42.aarch64 which-2.21-42.fc41.aarch64 xxhash-libs-0.8.2-3.fc41.aarch64 xz-5.6.2-2.fc41.aarch64 xz-libs-5.6.2-2.fc41.aarch64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.aarch64 zlib-ng-compat-2.1.7-2.fc41.aarch64 zstd-1.5.6-2.fc41.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1725580800 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-7.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-aarch64-1725633450.217053/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1725633450.217053/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-nbxfc571/ProDy/ProDy.spec) Config(child) 0 minutes 23 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-7.fc42.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1725633450.217053/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1725633450.217053/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1725633450.217053/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-6.fc41.aarch64 rpm-sequoia-1.7.0-2.fc41.aarch64 dnf5-5.2.5.0-2.fc41.aarch64 dnf5-plugins-5.2.5.0-2.fc41.aarch64 Finish: chroot init Start: build phase for ProDy-2.4.1-7.fc42.src.rpm Start: build setup for ProDy-2.4.1-7.fc42.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1725580800 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-7.fc42.src.rpm Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 191.5 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 117.8 KiB/s | 1.5 KiB | 00m00s fedora 100% | 286.1 KiB/s | 8.6 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: gcc aarch64 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 93.6 MiB gcc-c++ aarch64 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.0 MiB python3-biopython aarch64 1.84-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 31.8 MiB python3-devel aarch64 3.13.0~rc1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB python3-matplotlib aarch64 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21.8 MiB python3-nose noarch 1.3.7-59.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB python3-numpy aarch64 1:1.26.4-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41.2 MiB python3-scipy aarch64 1.11.3-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 71.6 MiB python3-setuptools noarch 69.2.0-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.6 MiB python3-pillow-tk aarch64 10.4.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 248.4 KiB python3-platformdirs noarch 4.2.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 168.6 KiB python3-pooch noarch 1.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 625.5 KiB python3-pyparsing noarch 3.1.2-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB python3-requests noarch 2.32.3-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 485.9 KiB python3-rpm-generators noarch 14-11.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.4 KiB python3-six noarch 1.16.0-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 118.3 KiB python3-tkinter aarch64 3.13.0~rc1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB tcl aarch64 1:8.6.14-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.5 MiB tk aarch64 1:8.6.14-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.9 MiB tzdata noarch 2024a-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB xml-common noarch 0.6.3-65.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB Transaction Summary: Installing: 106 packages Total size of inbound packages is 150 MiB. Need to download 150 MiB. After this operation 568 MiB will be used (install 568 MiB, remove 0 B). [ 1/106] python3-biopython-0:1.84-3.fc 100% | 160.7 MiB/s | 11.6 MiB | 00m00s [ 2/106] python3-devel-0:3.13.0~rc1-3. 100% | 69.6 MiB/s | 356.5 KiB | 00m00s [ 3/106] python3-matplotlib-0:3.9.1-2. 100% | 153.7 MiB/s | 4.5 MiB | 00m00s [ 4/106] python3-nose-0:1.3.7-59.fc41. 100% | 53.3 MiB/s | 327.2 KiB | 00m00s [ 5/106] gcc-c++-0:14.2.1-1.fc42.aarch 100% | 93.9 MiB/s | 12.9 MiB | 00m00s [ 6/106] python3-numpy-1:1.26.4-8.fc41 100% | 132.0 MiB/s | 6.6 MiB | 00m00s [ 7/106] python3-setuptools-0:69.2.0-8 100% | 103.5 MiB/s | 1.4 MiB | 00m00s [ 8/106] python3-urllib3-0:1.26.19-2.f 100% | 50.6 MiB/s | 259.0 KiB | 00m00s [ 9/106] glibc-devel-0:2.40.9000-1.fc4 100% | 91.1 MiB/s | 559.4 KiB | 00m00s [ 10/106] python3-scipy-0:1.11.3-15.fc4 100% | 209.6 MiB/s | 15.3 MiB | 00m00s [ 11/106] python3-0:3.13.0~rc1-3.fc42.a 100% | 1.5 MiB/s | 27.6 KiB | 00m00s [ 12/106] python3-idna-0:3.8-1.fc42.noa 100% | 21.6 MiB/s | 110.5 KiB | 00m00s [ 13/106] libgfortran-0:14.2.1-1.fc42.a 100% | 55.9 MiB/s | 458.3 KiB | 00m00s [ 14/106] flexiblas-netlib-0:3.4.4-3.fc 100% | 175.5 MiB/s | 2.8 MiB | 00m00s [ 15/106] python3-numpy-f2py-1:1.26.4-8 100% | 61.2 MiB/s | 501.2 KiB | 00m00s [ 16/106] python3-pooch-0:1.8.2-3.fc41. 100% | 24.7 MiB/s | 126.4 KiB | 00m00s [ 17/106] python3-platformdirs-0:4.2.2- 100% | 13.4 MiB/s | 41.0 KiB | 00m00s [ 18/106] python3-packaging-0:24.1-2.fc 100% | 28.4 MiB/s | 116.2 KiB | 00m00s [ 19/106] python3-requests-0:2.32.3-3.f 100% | 36.4 MiB/s | 149.0 KiB | 00m00s [ 20/106] freetype-0:2.13.2-6.fc41.aarc 100% | 65.4 MiB/s | 402.1 KiB | 00m00s [ 21/106] dejavu-sans-fonts-0:2.37-24.f 100% | 120.5 MiB/s | 1.3 MiB | 00m00s [ 22/106] libqhull_r-1:8.0.2-5.fc41.aar 100% | 47.8 MiB/s | 195.8 KiB | 00m00s [ 23/106] python3-cairo-0:1.25.1-5.fc41 100% | 41.2 MiB/s | 126.5 KiB | 00m00s [ 24/106] python3-cycler-0:0.11.0-13.fc 100% | 6.9 MiB/s | 21.3 KiB | 00m00s [ 25/106] python3-contourpy-0:1.3.0-1.f 100% | 47.6 MiB/s | 243.5 KiB | 00m00s [ 26/106] python3-dateutil-1:2.8.2-16.f 100% | 68.2 MiB/s | 349.0 KiB | 00m00s [ 27/106] python3-kiwisolver-0:1.4.7-1. 100% | 20.9 MiB/s | 64.1 KiB | 00m00s [ 28/106] python3-matplotlib-data-0:3.9 100% | 99.4 MiB/s | 508.9 KiB | 00m00s [ 29/106] python3-matplotlib-tk-0:3.9.1 100% | 25.8 MiB/s | 105.8 KiB | 00m00s [ 30/106] python3-pillow-0:10.4.0-2.fc4 100% | 113.7 MiB/s | 931.5 KiB | 00m00s [ 31/106] python3-fonttools-0:4.53.1-2. 100% | 88.4 MiB/s | 2.8 MiB | 00m00s [ 32/106] pyproject-rpm-macros-0:1.14.0 100% | 10.4 MiB/s | 42.6 KiB | 00m00s [ 33/106] python3-pyparsing-0:3.1.2-7.f 100% | 29.3 MiB/s | 270.3 KiB | 00m00s [ 34/106] python-rpm-macros-0:3.13-3.fc 100% | 4.3 MiB/s | 17.7 KiB | 00m00s [ 35/106] python3-rpm-generators-0:14-1 100% | 9.5 MiB/s | 29.3 KiB | 00m00s [ 36/106] python3-rpm-macros-0:3.13-3.f 100% | 4.1 MiB/s | 12.4 KiB | 00m00s [ 37/106] python3-six-0:1.16.0-23.fc41. 100% | 8.1 MiB/s | 41.2 KiB | 00m00s [ 38/106] tzdata-0:2024a-9.fc41.noarch 100% | 35.0 MiB/s | 430.6 KiB | 00m00s [ 39/106] cairo-0:1.18.0-4.fc41.aarch64 100% | 56.8 MiB/s | 698.1 KiB | 00m00s [ 40/106] python3-libs-0:3.13.0~rc1-3.f 100% | 184.4 MiB/s | 8.7 MiB | 00m00s [ 41/106] flex-0:2.6.4-18.fc41.aarch64 100% | 21.5 MiB/s | 286.5 KiB | 00m00s [ 42/106] libxcrypt-devel-0:4.4.36-7.fc 100% | 9.4 MiB/s | 28.8 KiB | 00m00s [ 43/106] libmpc-0:1.3.1-6.fc41.aarch64 100% | 23.7 MiB/s | 72.7 KiB | 00m00s [ 44/106] kernel-headers-0:6.11.0-0.rc6 100% | 144.3 MiB/s | 1.4 MiB | 00m00s [ 45/106] annobin-plugin-gcc-0:12.70-1. 100% | 105.5 MiB/s | 972.0 KiB | 00m00s [ 46/106] libstdc++-devel-0:14.2.1-1.fc 100% | 163.0 MiB/s | 2.6 MiB | 00m00s [ 47/106] gcc-plugin-annobin-0:14.2.1-1 100% | 10.6 MiB/s | 54.2 KiB | 00m00s [ 48/106] libasan-0:14.2.1-1.fc42.aarch 100% | 60.7 MiB/s | 497.3 KiB | 00m00s [ 49/106] libatomic-0:14.2.1-1.fc42.aar 100% | 7.0 MiB/s | 42.8 KiB | 00m00s [ 50/106] libubsan-0:14.2.1-1.fc42.aarc 100% | 23.5 MiB/s | 216.6 KiB | 00m00s [ 51/106] cpp-0:14.2.1-1.fc42.aarch64 100% | 237.8 MiB/s | 10.7 MiB | 00m00s [ 52/106] make-1:4.4.1-8.fc41.aarch64 100% | 28.2 MiB/s | 576.6 KiB | 00m00s [ 53/106] libpng-2:1.6.40-4.fc41.aarch6 100% | 16.2 MiB/s | 116.3 KiB | 00m00s [ 54/106] harfbuzz-0:9.0.0-3.fc42.aarch 100% | 91.5 MiB/s | 1.0 MiB | 00m00s [ 55/106] flexiblas-0:3.4.4-3.fc41.aarc 100% | 4.9 MiB/s | 25.3 KiB | 00m00s [ 56/106] flexiblas-openblas-openmp-0:3 100% | 5.4 MiB/s | 16.5 KiB | 00m00s [ 57/106] m4-0:1.4.19-10.fc41.aarch64 100% | 57.6 MiB/s | 294.8 KiB | 00m00s [ 58/106] fonts-filesystem-1:2.0.5-17.f 100% | 2.1 MiB/s | 8.5 KiB | 00m00s [ 59/106] fontconfig-0:2.15.0-8.fc41.aa 100% | 51.0 MiB/s | 261.3 KiB | 00m00s [ 60/106] libX11-0:1.8.10-2.fc42.aarch6 100% | 89.5 MiB/s | 641.7 KiB | 00m00s [ 61/106] libXext-0:1.3.6-2.fc41.aarch6 100% | 12.6 MiB/s | 38.8 KiB | 00m00s [ 62/106] libXrender-0:0.9.11-7.fc41.aa 100% | 8.9 MiB/s | 27.3 KiB | 00m00s [ 63/106] libxcb-0:1.17.0-2.fc41.aarch6 100% | 47.2 MiB/s | 241.5 KiB | 00m00s [ 64/106] pixman-0:0.43.4-2.fc41.aarch6 100% | 41.9 MiB/s | 214.6 KiB | 00m00s [ 65/106] annobin-docs-0:12.70-1.fc42.n 100% | 22.5 MiB/s | 92.0 KiB | 00m00s [ 66/106] python3-brotli-0:1.1.0-5.fc41 100% | 56.5 MiB/s | 347.3 KiB | 00m00s [ 67/106] python3-fs-0:2.4.16-9.fc41.no 100% | 45.6 MiB/s | 280.1 KiB | 00m00s [ 68/106] python3-charset-normalizer-0: 100% | 24.2 MiB/s | 99.3 KiB | 00m00s [ 69/106] python3-lxml-0:5.3.0-1.fc42.a 100% | 128.1 MiB/s | 1.3 MiB | 00m00s [ 70/106] lcms2-0:2.16-4.fc41.aarch64 100% | 25.3 MiB/s | 181.7 KiB | 00m00s [ 71/106] libimagequant-0:4.0.3-5.fc41. 100% | 55.7 MiB/s | 285.3 KiB | 00m00s [ 72/106] libraqm-0:0.8.0-8.fc41.aarch6 100% | 6.5 MiB/s | 20.1 KiB | 00m00s [ 73/106] libjpeg-turbo-0:3.0.2-3.fc41. 100% | 51.1 MiB/s | 261.8 KiB | 00m00s [ 74/106] libtiff-0:4.6.0-6.fc42.aarch6 100% | 49.8 MiB/s | 204.0 KiB | 00m00s [ 75/106] libwebp-0:1.4.0-4.fc41.aarch6 100% | 48.8 MiB/s | 249.6 KiB | 00m00s [ 76/106] python3-olefile-0:0.47-5.fc41 100% | 24.3 MiB/s | 74.6 KiB | 00m00s [ 77/106] openjpeg-0:2.5.2-4.fc42.aarch 100% | 36.0 MiB/s | 184.1 KiB | 00m00s [ 78/106] python3-pillow-tk-0:10.4.0-2. 100% | 10.0 MiB/s | 30.7 KiB | 00m00s [ 79/106] python3-tkinter-0:3.13.0~rc1- 100% | 57.9 MiB/s | 355.7 KiB | 00m00s [ 80/106] libxslt-0:1.1.42-2.fc41.aarch 100% | 36.6 MiB/s | 187.6 KiB | 00m00s [ 81/106] expat-0:2.6.3-1.fc42.aarch64 100% | 27.2 MiB/s | 111.4 KiB | 00m00s [ 82/106] python3-matplotlib-data-fonts 100% | 136.7 MiB/s | 2.3 MiB | 00m00s [ 83/106] libb2-0:0.98.1-12.fc41.aarch6 100% | 4.9 MiB/s | 24.9 KiB | 00m00s [ 84/106] mpdecimal-0:2.5.1-16.fc41.aar 100% | 17.4 MiB/s | 89.1 KiB | 00m00s [ 85/106] python3-appdirs-0:1.4.4-24.fc 100% | 5.7 MiB/s | 23.4 KiB | 00m00s [ 86/106] python-pip-wheel-0:24.2-1.fc4 100% | 109.3 MiB/s | 1.2 MiB | 00m00s [ 87/106] libXau-0:1.0.11-7.fc41.aarch6 100% | 7.9 MiB/s | 32.4 KiB | 00m00s [ 88/106] jbigkit-libs-0:2.1-30.fc41.aa 100% | 13.0 MiB/s | 53.2 KiB | 00m00s [ 89/106] liblerc-0:4.0.0-7.fc41.aarch6 100% | 30.6 MiB/s | 188.0 KiB | 00m00s [ 90/106] fribidi-0:1.0.15-2.fc41.aarch 100% | 22.5 MiB/s | 92.1 KiB | 00m00s [ 91/106] libX11-common-0:1.8.10-2.fc42 100% | 35.4 MiB/s | 144.8 KiB | 00m00s [ 92/106] graphite2-0:1.3.14-16.fc41.aa 100% | 14.9 MiB/s | 91.7 KiB | 00m00s [ 93/106] glib2-0:2.82.0-1.fc42.aarch64 100% | 177.8 MiB/s | 3.0 MiB | 00m00s [ 94/106] gnutls-0:3.8.7-2.fc42.aarch64 100% | 88.1 MiB/s | 1.1 MiB | 00m00s [ 95/106] default-fonts-core-sans-0:4.1 100% | 6.1 MiB/s | 24.9 KiB | 00m00s [ 96/106] gcc-0:14.2.1-1.fc42.aarch64 100% | 56.4 MiB/s | 33.8 MiB | 00m01s [ 97/106] xml-common-0:0.6.3-65.fc41.no 100% | 946.6 KiB/s | 31.2 KiB | 00m00s [ 98/106] abattis-cantarell-vf-fonts-0: 100% | 23.5 MiB/s | 120.2 KiB | 00m00s [ 99/106] google-noto-sans-vf-fonts-0:2 100% | 64.4 MiB/s | 593.9 KiB | 00m00s [100/106] openblas-openmp-0:0.3.26-5.fc 100% | 75.4 MiB/s | 3.8 MiB | 00m00s [101/106] tcl-1:8.6.14-2.fc41.aarch64 100% | 70.5 MiB/s | 1.1 MiB | 00m00s [102/106] openblas-0:0.3.26-5.fc41.aarc 100% | 7.6 MiB/s | 38.7 KiB | 00m00s 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Installing python3-lxml-0:5.3 100% | 241.3 MiB/s | 5.3 MiB | 00m00s [ 80/108] Installing python3-fonttools- 100% | 263.0 MiB/s | 18.9 MiB | 00m00s [ 81/108] Installing openjpeg-0:2.5.2-4 100% | 175.7 MiB/s | 539.7 KiB | 00m00s [ 82/108] Installing libimagequant-0:4. 100% | 217.7 MiB/s | 668.7 KiB | 00m00s [ 83/108] Installing lcms2-0:2.16-4.fc4 100% | 158.4 MiB/s | 486.5 KiB | 00m00s [ 84/108] Installing python3-pillow-0:1 100% | 244.2 MiB/s | 4.6 MiB | 00m00s [ 85/108] Installing python3-pillow-tk- 100% | 244.3 MiB/s | 250.2 KiB | 00m00s [ 86/108] Installing annobin-docs-0:12. 100% | 96.5 MiB/s | 98.8 KiB | 00m00s [ 87/108] Installing pixman-0:0.43.4-2. 100% | 234.2 MiB/s | 719.5 KiB | 00m00s [ 88/108] Installing cairo-0:1.18.0-4.f 100% | 272.5 MiB/s | 1.9 MiB | 00m00s [ 89/108] Installing python3-cairo-0:1. 100% | 191.6 MiB/s | 588.6 KiB | 00m00s [ 90/108] Installing m4-0:1.4.19-10.fc4 100% | 131.8 MiB/s | 675.0 KiB | 00m00s [ 91/108] Installing flex-0:2.6.4-18.fc 100% | 173.3 MiB/s | 887.4 KiB | 00m00s [ 92/108] Installing make-1:4.4.1-8.fc4 100% | 231.4 MiB/s | 1.9 MiB | 00m00s [ 93/108] Installing libubsan-0:14.2.1- 100% | 263.7 MiB/s | 540.0 KiB | 00m00s [ 94/108] Installing libatomic-0:14.2.1 100% | 193.0 MiB/s | 197.6 KiB | 00m00s [ 95/108] Installing libasan-0:14.2.1-1 100% | 267.0 MiB/s | 1.6 MiB | 00m00s [ 96/108] Installing libstdc++-devel-0: 100% | 267.2 MiB/s | 15.2 MiB | 00m00s [ 97/108] Installing kernel-headers-0:6 100% | 139.8 MiB/s | 6.4 MiB | 00m00s [ 98/108] Installing libxcrypt-devel-0: 100% | 15.9 MiB/s | 32.6 KiB | 00m00s [ 99/108] Installing glibc-devel-0:2.40 100% | 114.3 MiB/s | 2.3 MiB | 00m00s [100/108] Installing gcc-0:14.2.1-1.fc4 100% | 333.1 MiB/s | 93.6 MiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch [101/108] Installing libqhull_r-1:8.0.2 100% | 190.2 MiB/s | 584.4 KiB | 00m00s [102/108] Installing python3-matplotlib 100% | 90.0 MiB/s | 368.7 KiB | 00m00s [103/108] Installing python3-matplotlib 100% | 247.2 MiB/s | 22.0 MiB | 00m00s [104/108] Installing gcc-c++-0:14.2.1-1 100% | 299.5 MiB/s | 35.0 MiB | 00m00s [105/108] Installing annobin-plugin-gcc 100% | 64.5 MiB/s | 1.1 MiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch [106/108] Installing gcc-plugin-annobin 100% | 9.7 MiB/s | 198.7 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch [107/108] Installing python3-biopython- 100% | 258.8 MiB/s | 32.1 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [108/108] Installing python3-nose-0:1.3 100% | 5.6 MiB/s | 1.3 MiB | 00m00s >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.aarch64 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.aarch64 >>> Running trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.aarch64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.aarch64 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.aarch64 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.aarch64 >>> Running trigger-install scriptlet: glib2-0:2.82.0-1.fc42.aarch64 >>> Stop trigger-install scriptlet: glib2-0:2.82.0-1.fc42.aarch64 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.aarch64 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.aarch64 Complete! Warning: skipped PGP checks for 106 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: build setup for ProDy-2.4.1-7.fc42.src.rpm Start: rpmbuild ProDy-2.4.1-7.fc42.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1725580800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.bSnsyx + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + test -d /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/rm -rf /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.XiB2Iu + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd /builddir/build/BUILD/ProDy-2.4.1-build + rm -rf ProDy-2.4.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ProDy-2.4.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd ProDy-2.4.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/ProDy-change_requires.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find prody/proteins/ccealign -name '*.h' -exec chmod 0644 '{}' ';' + find prody/proteins/ccealign -name '*.cpp' -exec chmod 0644 '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ZwEQse + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-aarch64-cpython-313 creating build/lib.linux-aarch64-cpython-313/prody copying prody/__init__.py -> build/lib.linux-aarch64-cpython-313/prody creating build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/subset.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/selection.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/select.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/segment.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/residue.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/pointer.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/nbexclusion.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/improper.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/hierview.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/functions.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/flags.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/fields.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/donor.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/dihedral.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/crossterm.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/chain.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/bond.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/atommap.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/atomic.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/atomgroup.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/atom.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/angle.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/acceptor.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/atomic creating build/lib.linux-aarch64-cpython-313/prody/database copying prody/database/uniprot.py -> build/lib.linux-aarch64-cpython-313/prody/database copying prody/database/quartataweb.py -> build/lib.linux-aarch64-cpython-313/prody/database copying prody/database/pfam.py -> build/lib.linux-aarch64-cpython-313/prody/database copying prody/database/goa.py -> build/lib.linux-aarch64-cpython-313/prody/database copying prody/database/dali.py -> build/lib.linux-aarch64-cpython-313/prody/database copying prody/database/cath.py -> build/lib.linux-aarch64-cpython-313/prody/database copying prody/database/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/database creating build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/vmdfile.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/signature.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/sampling.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/rtb.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/plotting.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/perturb.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/pca.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/nmdfile.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/nma.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/modeset.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/mode.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/mechstiff.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/imanm.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/heatmapper.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/gnm.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/gamma.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/functions.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/exgnm.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/exanm.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/essa.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/entropy.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/editing.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/compare.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/clustenm.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/bildfile.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/bbenm.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/anm.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/analysis.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/adaptive.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics creating build/lib.linux-aarch64-cpython-313/prody/ensemble copying prody/ensemble/pdbensemble.py -> build/lib.linux-aarch64-cpython-313/prody/ensemble copying prody/ensemble/functions.py -> build/lib.linux-aarch64-cpython-313/prody/ensemble copying prody/ensemble/ensemble.py -> build/lib.linux-aarch64-cpython-313/prody/ensemble copying prody/ensemble/conformation.py -> build/lib.linux-aarch64-cpython-313/prody/ensemble copying prody/ensemble/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/ensemble creating build/lib.linux-aarch64-cpython-313/prody/kdtree copying prody/kdtree/kdtree.py -> build/lib.linux-aarch64-cpython-313/prody/kdtree copying prody/kdtree/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/kdtree creating build/lib.linux-aarch64-cpython-313/prody/measure copying prody/measure/transform.py -> build/lib.linux-aarch64-cpython-313/prody/measure copying prody/measure/measure.py -> build/lib.linux-aarch64-cpython-313/prody/measure copying prody/measure/contacts.py -> build/lib.linux-aarch64-cpython-313/prody/measure copying prody/measure/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/measure creating build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/wwpdb.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/waterbridges.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/stride.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/starfile.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/pdbfile.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/pdbclusters.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/localpdb.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/header.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/functions.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/fixer.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/emdfile.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/dssp.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/compare.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/cifheader.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/ciffile.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/blastpdb.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/proteins creating build/lib.linux-aarch64-cpython-313/prody/sequence copying prody/sequence/sequence.py -> build/lib.linux-aarch64-cpython-313/prody/sequence copying prody/sequence/plotting.py -> build/lib.linux-aarch64-cpython-313/prody/sequence copying prody/sequence/msafile.py -> build/lib.linux-aarch64-cpython-313/prody/sequence copying prody/sequence/msa.py -> build/lib.linux-aarch64-cpython-313/prody/sequence copying prody/sequence/analysis.py -> build/lib.linux-aarch64-cpython-313/prody/sequence copying prody/sequence/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/sequence creating build/lib.linux-aarch64-cpython-313/prody/trajectory copying prody/trajectory/trajfile.py -> build/lib.linux-aarch64-cpython-313/prody/trajectory copying prody/trajectory/trajectory.py -> build/lib.linux-aarch64-cpython-313/prody/trajectory copying prody/trajectory/trajbase.py -> build/lib.linux-aarch64-cpython-313/prody/trajectory copying prody/trajectory/psffile.py -> build/lib.linux-aarch64-cpython-313/prody/trajectory copying prody/trajectory/frame.py -> build/lib.linux-aarch64-cpython-313/prody/trajectory copying prody/trajectory/dcdfile.py -> build/lib.linux-aarch64-cpython-313/prody/trajectory copying prody/trajectory/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/trajectory creating build/lib.linux-aarch64-cpython-313/prody/chromatin copying prody/chromatin/straw.py -> build/lib.linux-aarch64-cpython-313/prody/chromatin copying prody/chromatin/norm.py -> build/lib.linux-aarch64-cpython-313/prody/chromatin copying prody/chromatin/hic.py -> build/lib.linux-aarch64-cpython-313/prody/chromatin copying prody/chromatin/functions.py -> build/lib.linux-aarch64-cpython-313/prody/chromatin copying prody/chromatin/cluster.py -> build/lib.linux-aarch64-cpython-313/prody/chromatin copying prody/chromatin/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/chromatin creating build/lib.linux-aarch64-cpython-313/prody/compounds copying prody/compounds/pdbligands.py -> build/lib.linux-aarch64-cpython-313/prody/compounds copying prody/compounds/functions.py -> build/lib.linux-aarch64-cpython-313/prody/compounds copying prody/compounds/ccd.py -> build/lib.linux-aarch64-cpython-313/prody/compounds copying prody/compounds/bird.py -> build/lib.linux-aarch64-cpython-313/prody/compounds copying prody/compounds/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/compounds creating build/lib.linux-aarch64-cpython-313/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> build/lib.linux-aarch64-cpython-313/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/domain_decomposition creating build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/settings.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/seqtools.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/pathtools.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/misctools.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/logger.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/legacy.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/laptools.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/eigtools.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/drawtools.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/doctools.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/checkers.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/catchall.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/TreeConstruction.py -> build/lib.linux-aarch64-cpython-313/prody/utilities creating build/lib.linux-aarch64-cpython-313/prody/apps copying prody/apps/apptools.py -> build/lib.linux-aarch64-cpython-313/prody/apps copying prody/apps/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/apps creating build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_clustenm.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps creating build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps creating build/lib.linux-aarch64-cpython-313/prody/tests copying prody/tests/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests creating build/lib.linux-aarch64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-aarch64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-aarch64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-aarch64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-aarch64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-aarch64-cpython-313/prody/tests/apps copying prody/tests/apps/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/apps creating build/lib.linux-aarch64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> build/lib.linux-aarch64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_select.py -> build/lib.linux-aarch64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> build/lib.linux-aarch64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> build/lib.linux-aarch64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> build/lib.linux-aarch64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> build/lib.linux-aarch64-cpython-313/prody/tests/atomic copying prody/tests/atomic/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/atomic creating build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles creating build/lib.linux-aarch64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> build/lib.linux-aarch64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> build/lib.linux-aarch64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> build/lib.linux-aarch64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> build/lib.linux-aarch64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/dynamics creating build/lib.linux-aarch64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-aarch64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> build/lib.linux-aarch64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-aarch64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-aarch64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/ensemble creating build/lib.linux-aarch64-cpython-313/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-aarch64-cpython-313/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/kdtree creating build/lib.linux-aarch64-cpython-313/prody/tests/measure copying prody/tests/measure/test_transform.py -> build/lib.linux-aarch64-cpython-313/prody/tests/measure copying prody/tests/measure/test_measure.py -> build/lib.linux-aarch64-cpython-313/prody/tests/measure copying prody/tests/measure/test_contacts.py -> build/lib.linux-aarch64-cpython-313/prody/tests/measure copying prody/tests/measure/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/measure creating build/lib.linux-aarch64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-aarch64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-aarch64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-aarch64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_header.py -> build/lib.linux-aarch64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> build/lib.linux-aarch64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> build/lib.linux-aarch64-cpython-313/prody/tests/proteins copying prody/tests/proteins/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/proteins creating build/lib.linux-aarch64-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> build/lib.linux-aarch64-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> build/lib.linux-aarch64-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> build/lib.linux-aarch64-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> build/lib.linux-aarch64-cpython-313/prody/tests/sequence copying prody/tests/sequence/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/sequence creating build/lib.linux-aarch64-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> build/lib.linux-aarch64-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-aarch64-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/trajectory creating build/lib.linux-aarch64-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-aarch64-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> build/lib.linux-aarch64-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> build/lib.linux-aarch64-cpython-313/prody/tests/utilities copying prody/tests/utilities/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/utilities creating build/lib.linux-aarch64-cpython-313/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> build/lib.linux-aarch64-cpython-313/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> build/lib.linux-aarch64-cpython-313/prody/utilities/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_hex.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_h36.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build/temp.linux-aarch64-cpython-313 creating build/temp.linux-aarch64-cpython-313/prody creating build/temp.linux-aarch64-cpython-313/prody/dynamics gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/dynamics/rtbtools.c -o build/temp.linux-aarch64-cpython-313/prody/dynamics/rtbtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-313/prody/dynamics/rtbtools.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-313/prody/dynamics/rtbtools.cpython-313-aarch64-linux-gnu.so building 'prody.dynamics.smtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/dynamics/smtools.c -o build/temp.linux-aarch64-cpython-313/prody/dynamics/smtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-313/prody/dynamics/smtools.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-313/prody/dynamics/smtools.cpython-313-aarch64-linux-gnu.so building 'prody.sequence.msatools' extension creating build/temp.linux-aarch64-cpython-313/prody/sequence gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/msatools.c -o build/temp.linux-aarch64-cpython-313/prody/sequence/msatools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-313/prody/sequence/msatools.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-313/prody/sequence/msatools.cpython-313-aarch64-linux-gnu.so building 'prody.sequence.msaio' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/msaio.c -o build/temp.linux-aarch64-cpython-313/prody/sequence/msaio.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-313/prody/sequence/msaio.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-313/prody/sequence/msaio.cpython-313-aarch64-linux-gnu.so building 'prody.sequence.seqtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/seqtools.c -o build/temp.linux-aarch64-cpython-313/prody/sequence/seqtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-313/prody/sequence/seqtools.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-313/prody/sequence/seqtools.cpython-313-aarch64-linux-gnu.so building 'prody.kdtree._CKDTree' extension creating build/temp.linux-aarch64-cpython-313/prody/kdtree gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/kdtree/KDTree.c -o build/temp.linux-aarch64-cpython-313/prody/kdtree/KDTree.o gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-aarch64-cpython-313/prody/kdtree/KDTreemodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-313/prody/kdtree/KDTree.o build/temp.linux-aarch64-cpython-313/prody/kdtree/KDTreemodule.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-313/prody/kdtree/_CKDTree.cpython-313-aarch64-linux-gnu.so building 'prody.proteins.ccealign' extension creating build/temp.linux-aarch64-cpython-313/prody/proteins creating build/temp.linux-aarch64-cpython-313/prody/proteins/ccealign gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Iprody/utilities/tnt -I/usr/include/python3.13 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-aarch64-cpython-313/prody/proteins/ccealign/ccealignmodule.o In file included from prody/utilities/tnt/tnt.h:41, from prody/proteins/ccealign/ccealignmodule.h:43, from prody/proteins/ccealign/ccealignmodule.cpp:38: In member function ‘TNT::Array1D::set_(double*, double*, double const&)’, inlined from ‘TNT::Array1D::Array1D(int, double const&)’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest(cePoint*, cePoint*, afp**, int, int, int)’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ~~~^~~ g++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-313/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-313/prody/proteins/ccealign.cpython-313-aarch64-linux-gnu.so In member function ‘set_’, inlined from ‘__ct ’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘__builtin_memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ^ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.3oCUUE + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + '[' /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build + mkdir /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT --prefix /usr running install /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64 creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13 creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-aarch64-cpython-313/prody/tests/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-aarch64-cpython-313/prody/tests/utilities/test_checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-aarch64-cpython-313/prody/tests/utilities/test_misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-aarch64-cpython-313/prody/tests/utilities/test_pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-aarch64-cpython-313/prody/tests/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-aarch64-cpython-313/prody/tests/trajectory/test_dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-aarch64-cpython-313/prody/tests/trajectory/test_frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-aarch64-cpython-313/prody/tests/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-aarch64-cpython-313/prody/tests/sequence/test_analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-aarch64-cpython-313/prody/tests/sequence/test_msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-aarch64-cpython-313/prody/tests/sequence/test_msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-aarch64-cpython-313/prody/tests/sequence/test_sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-aarch64-cpython-313/prody/tests/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-aarch64-cpython-313/prody/tests/proteins/test_ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-aarch64-cpython-313/prody/tests/proteins/test_dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-aarch64-cpython-313/prody/tests/proteins/test_header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-aarch64-cpython-313/prody/tests/proteins/test_localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-aarch64-cpython-313/prody/tests/proteins/test_pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-aarch64-cpython-313/prody/tests/proteins/test_wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure copying build/lib.linux-aarch64-cpython-313/prody/tests/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure copying build/lib.linux-aarch64-cpython-313/prody/tests/measure/test_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure copying build/lib.linux-aarch64-cpython-313/prody/tests/measure/test_measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure copying build/lib.linux-aarch64-cpython-313/prody/tests/measure/test_transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree copying build/lib.linux-aarch64-cpython-313/prody/tests/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree copying build/lib.linux-aarch64-cpython-313/prody/tests/kdtree/test_kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-aarch64-cpython-313/prody/tests/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-aarch64-cpython-313/prody/tests/ensemble/test_conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-aarch64-cpython-313/prody/tests/ensemble/test_ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-aarch64-cpython-313/prody/tests/ensemble/test_functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-aarch64-cpython-313/prody/tests/ensemble/test_pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-aarch64-cpython-313/prody/tests/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-aarch64-cpython-313/prody/tests/dynamics/test_editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-aarch64-cpython-313/prody/tests/dynamics/test_enms.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-aarch64-cpython-313/prody/tests/dynamics/test_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-aarch64-cpython-313/prody/tests/dynamics/test_signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/mmcif_6yfy.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/mmcif_6zu5.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/msa_Cys_knot.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/msa_Cys_knot.slx -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/msa_Cys_knot.sth -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/xmlSTI.xml -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/dcd2k39_truncated.dcd -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/anm1ubi_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/exanm2nwl_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pca2k39_cov.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/rtb2gb1_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/rtb2gb1_project.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/anm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/anm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/commute1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/exanm2nwl_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/exanm2nwl_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/gnm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/gnm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/hit1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/msa_Cys_knot_di.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pca2k39_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pca2k39_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb1ejg.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb1r19_dssp.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb1ubi.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb1ubi_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb2k39_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb2k39_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb2nwl-opm.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb3hsy.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb3mht.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb3o21.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb3p3w.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb4v8r_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb4v8r_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/pdbRTER.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-313/prody/tests/datafiles/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-aarch64-cpython-313/prody/tests/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-aarch64-cpython-313/prody/tests/atomic/test_atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-aarch64-cpython-313/prody/tests/atomic/test_atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-aarch64-cpython-313/prody/tests/atomic/test_fragment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-aarch64-cpython-313/prody/tests/atomic/test_hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-aarch64-cpython-313/prody/tests/atomic/test_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-aarch64-cpython-313/prody/tests/atomic/test_subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-aarch64-cpython-313/prody/tests/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-aarch64-cpython-313/prody/tests/apps/test_prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-aarch64-cpython-313/prody/tests/apps/test_prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-aarch64-cpython-313/prody/tests/apps/test_prody_examples.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-aarch64-cpython-313/prody/tests/apps/test_prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-aarch64-cpython-313/prody/tests/apps/test_prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-aarch64-cpython-313/prody/tests/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps/evol_coevol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps/evol_conserv.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps/evol_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps/evol_filter.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps/evol_merge.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps/evol_occupancy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps/evol_rankorder.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps/evol_refine.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps/evol_search.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps/nmaoptions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps/prody_align.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps/prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps/prody_biomol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps/prody_blast.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps/prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps/prody_clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps/prody_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps/prody_eda.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps/prody_energy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps/prody_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps/prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps/prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps/prody_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-313/prody/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps copying build/lib.linux-aarch64-cpython-313/prody/apps/apptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-aarch64-cpython-313/prody/utilities/datafiles/mod_res_map.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-aarch64-cpython-313/prody/utilities/datafiles/saxs_water.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-aarch64-cpython-313/prody/utilities/TreeConstruction.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-313/prody/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-313/prody/utilities/catchall.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-313/prody/utilities/checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-313/prody/utilities/doctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-313/prody/utilities/drawtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-313/prody/utilities/eigtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-313/prody/utilities/laptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-313/prody/utilities/legacy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-313/prody/utilities/logger.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-313/prody/utilities/misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-313/prody/utilities/pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-313/prody/utilities/seqtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-313/prody/utilities/settings.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition copying build/lib.linux-aarch64-cpython-313/prody/domain_decomposition/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition copying build/lib.linux-aarch64-cpython-313/prody/domain_decomposition/spectrus.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-aarch64-cpython-313/prody/compounds/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-aarch64-cpython-313/prody/compounds/bird.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-aarch64-cpython-313/prody/compounds/ccd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-aarch64-cpython-313/prody/compounds/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-aarch64-cpython-313/prody/compounds/pdbligands.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-aarch64-cpython-313/prody/chromatin/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-aarch64-cpython-313/prody/chromatin/cluster.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-aarch64-cpython-313/prody/chromatin/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-aarch64-cpython-313/prody/chromatin/hic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-aarch64-cpython-313/prody/chromatin/norm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-aarch64-cpython-313/prody/chromatin/straw.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-aarch64-cpython-313/prody/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-aarch64-cpython-313/prody/trajectory/dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-aarch64-cpython-313/prody/trajectory/frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-aarch64-cpython-313/prody/trajectory/psffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-aarch64-cpython-313/prody/trajectory/trajbase.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-aarch64-cpython-313/prody/trajectory/trajectory.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-aarch64-cpython-313/prody/trajectory/trajfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-313/prody/sequence/seqtools.cpython-313-aarch64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-313/prody/sequence/msaio.cpython-313-aarch64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-313/prody/sequence/msatools.cpython-313-aarch64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-313/prody/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-313/prody/sequence/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-313/prody/sequence/msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-313/prody/sequence/msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-313/prody/sequence/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-313/prody/sequence/sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/ccealign.cpython-313-aarch64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/blastpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/cifheader.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/emdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/fixer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/pdbclusters.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/starfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/stride.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/waterbridges.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-313/prody/proteins/wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure copying build/lib.linux-aarch64-cpython-313/prody/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure copying build/lib.linux-aarch64-cpython-313/prody/measure/contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure copying build/lib.linux-aarch64-cpython-313/prody/measure/measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure copying build/lib.linux-aarch64-cpython-313/prody/measure/transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree copying build/lib.linux-aarch64-cpython-313/prody/kdtree/_CKDTree.cpython-313-aarch64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree copying build/lib.linux-aarch64-cpython-313/prody/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree copying build/lib.linux-aarch64-cpython-313/prody/kdtree/kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-aarch64-cpython-313/prody/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-aarch64-cpython-313/prody/ensemble/conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-aarch64-cpython-313/prody/ensemble/ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-aarch64-cpython-313/prody/ensemble/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-aarch64-cpython-313/prody/ensemble/pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/smtools.cpython-313-aarch64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/rtbtools.cpython-313-aarch64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/adaptive.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/bbenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/bildfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/entropy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/essa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/exanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/exgnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/gamma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/heatmapper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/imanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/mechstiff.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/mode.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/modeset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/nma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/nmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/perturb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/rtb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/sampling.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-313/prody/dynamics/vmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-aarch64-cpython-313/prody/database/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-aarch64-cpython-313/prody/database/cath.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-aarch64-cpython-313/prody/database/dali.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-aarch64-cpython-313/prody/database/goa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-aarch64-cpython-313/prody/database/pfam.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-aarch64-cpython-313/prody/database/quartataweb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-aarch64-cpython-313/prody/database/uniprot.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/acceptor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/angle.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/atom.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/atomgroup.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/bond.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/chain.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/crossterm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/dihedral.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/donor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/fields.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/flags.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/improper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/nbexclusion.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/pointer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/residue.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/segment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/selection.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/atomic/subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-313/prody/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_header.py to test_header.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_measure.py to test_measure.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_transform.py to test_transform.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_select.py to test_select.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_clustenm.py to prody_clustenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/apptools.py to apptools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/catchall.py to catchall.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/checkers.py to checkers.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/doctools.py to doctools.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/drawtools.py to drawtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/eigtools.py to eigtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/laptools.py to laptools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/legacy.py to legacy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/logger.py to logger.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/misctools.py to misctools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/pathtools.py to pathtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/seqtools.py to seqtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/settings.py to settings.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/bird.py to bird.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/ccd.py to ccd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/pdbligands.py to pdbligands.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/cluster.py to cluster.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/hic.py to hic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/norm.py to norm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/straw.py to straw.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/frame.py to frame.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/psffile.py to psffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/trajbase.py to trajbase.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/trajectory.py to trajectory.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/trajfile.py to trajfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/analysis.py to analysis.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/msa.py to msa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/msafile.py to msafile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/plotting.py to plotting.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/sequence.py to sequence.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/blastpdb.py to blastpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/ciffile.py to ciffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/cifheader.py to cifheader.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/compare.py to compare.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/dssp.py to dssp.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/emdfile.py to emdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/fixer.py to fixer.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/header.py to header.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py to localpdb.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/pdbfile.py to pdbfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/starfile.py to starfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/stride.py to stride.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/waterbridges.py to waterbridges.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/wwpdb.py to wwpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/contacts.py to contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/measure.py to measure.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/transform.py to transform.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree/kdtree.py to kdtree.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/conformation.py to conformation.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/ensemble.py to ensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/adaptive.py to adaptive.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/analysis.py to analysis.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/anm.py to anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/bbenm.py to bbenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/bildfile.py to bildfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/clustenm.py to clustenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/compare.py to compare.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/editing.py to editing.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/entropy.py to entropy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/essa.py to essa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/exanm.py to exanm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/exgnm.py to exgnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/gamma.py to gamma.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/gnm.py to gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/imanm.py to imanm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/mode.py to mode.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/modeset.py to modeset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/nma.py to nma.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/pca.py to pca.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/perturb.py to perturb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/plotting.py to plotting.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/rtb.py to rtb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/sampling.py to sampling.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/signature.py to signature.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/cath.py to cath.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/dali.py to dali.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/goa.py to goa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/pfam.py to pfam.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/quartataweb.py to quartataweb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/uniprot.py to uniprot.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/acceptor.py to acceptor.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/angle.py to angle.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atom.py to atom.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atomgroup.py to atomgroup.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atomic.py to atomic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atommap.py to atommap.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/bond.py to bond.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/chain.py to chain.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/crossterm.py to crossterm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/dihedral.py to dihedral.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/donor.py to donor.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/fields.py to fields.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/flags.py to flags.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/hierview.py to hierview.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/improper.py to improper.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/pointer.py to pointer.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/residue.py to residue.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/segment.py to segment.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/select.py to select.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/selection.py to selection.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/subset.py to subset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/__init__.py to __init__.cpython-313.pyc writing byte-compilation script '/tmp/tmpcj1jc5ai.py' /usr/bin/python3 /tmp/tmpcj1jc5ai.py /usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' removing /tmp/tmpcj1jc5ai.py running install_egg_info running egg_info creating ProDy.egg-info writing ProDy.egg-info/PKG-INFO writing dependency_links to ProDy.egg-info/dependency_links.txt writing entry points to ProDy.egg-info/entry_points.txt writing requirements to ProDy.egg-info/requires.txt writing top-level names to ProDy.egg-info/top_level.txt writing manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'prody/*/*/*.c' warning: no files found matching 'prody/*/*.cpp' warning: no files found matching 'prody/utilities/datafiles/*.txt' adding license file 'LICENSE.rst' writing manifest file 'ProDy.egg-info/SOURCES.txt' Copying ProDy.egg-info to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ProDy-2.4.1-py3.13.egg-info running install_scripts Installing evol script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin Installing prody script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + rm -rfv /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/__pycache__ + mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + rm -f /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody + cd scripts + cp -pr ./prody ./python3.13-prody + cp -pr ./evol ./python3.13-evol + sed -i '1s=^#!/usr/bin/\(python\|env python\)[0-9.]*=#!/usr/bin/python3=' ./prody ./evol ./python3.13-prody ./python3.13-evol + for i in prody-3.13 + touch -r ./python3.13-prody prody-3.13 + install -p prody-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + ln -sf /usr/bin/python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody-3.13 + for i in evol-3.13 + touch -r ./python3.13-evol evol-3.13 + install -p evol-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + ln -sf /usr/bin/python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol-3.13 + cd .. + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.4.1-7.fc42 --unique-debug-suffix -2.4.1-7.fc42.aarch64 --unique-debug-src-base ProDy-2.4.1-7.fc42.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1 find-debuginfo: starting Extracting debug info from 7 files DWARF-compressing 7 files sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/ProDy-2.4.1-7.fc42.aarch64 464 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13 Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13 using python3.13 /usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atomic.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/subset.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atomgroup.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/flags.cpython-313.opt-1.pyc: rewriting with normalized contents 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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__pycache__/test_frame.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_misctools.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_pathtools.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_checkers.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_conserv.cpython-313.opt-1.pyc: rewriting with normalized contents Scanned 89 directories and 714 files, processed 233 inodes, 233 modified (52 replaced + 181 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS/rpm-debuginfo.specpart Processing files: python3-ProDy-2.4.1-7.fc42.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.JvL5vS + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd ProDy-2.4.1 + DOCDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/README.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.je03eD + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd ProDy-2.4.1 + LICENSEDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/LICENSE.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol warning: absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody Provides: ProDy = 0:2.4.1-7.fc42 python-ProDy = 2.4.1-7.fc42 python3-ProDy = 2.4.1-7.fc42 python3-ProDy(aarch-64) = 2.4.1-7.fc42 python3.13-ProDy = 2.4.1-7.fc42 python3.13dist(prody) = 2.4.1 python3dist(prody) = 2.4.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.13 python3.13dist(biopython) python3.13dist(numpy) >= 1.10 python3.13dist(pyparsing) python3.13dist(scipy) python3.13dist(setuptools) Obsoletes: python-ProDy < 2.4.1-7.fc42 Processing files: ProDy-debugsource-2.4.1-7.fc42.aarch64 Provides: ProDy-debugsource = 2.4.1-7.fc42 ProDy-debugsource(aarch-64) = 2.4.1-7.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-ProDy-debuginfo-2.4.1-7.fc42.aarch64 Provides: debuginfo(build-id) = 3cc4c50c67e6a773c320cfa4bd16547da1680f7f debuginfo(build-id) = 450aa14c54728145a11de6fadbb25b4ecf92a866 debuginfo(build-id) = 50fb944d145c0e7a22f42ba324b6f34b078430a1 debuginfo(build-id) = 54b87e6dcad46101a7025c7f2990c3c220eb0b79 debuginfo(build-id) = a4d9285d45853a88520223ffb0687f0ed97007f9 debuginfo(build-id) = a52ad736463b58068b4119f717125fd35bf319b3 debuginfo(build-id) = d315f394d5fb3f8c1f21ce3a39dcc2296540357b python-ProDy-debuginfo = 2.4.1-7.fc42 python3-ProDy-debuginfo = 2.4.1-7.fc42 python3-ProDy-debuginfo(aarch-64) = 2.4.1-7.fc42 python3.13-ProDy-debuginfo = 2.4.1-7.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: ProDy-debugsource(aarch-64) = 2.4.1-7.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT Wrote: /builddir/build/RPMS/ProDy-debugsource-2.4.1-7.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/python3-ProDy-debuginfo-2.4.1-7.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/python3-ProDy-2.4.1-7.fc42.aarch64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.V5wCgS + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + test -d /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build + rm -rf /builddir/build/BUILD/ProDy-2.4.1-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody Finish: rpmbuild ProDy-2.4.1-7.fc42.src.rpm Finish: build phase for ProDy-2.4.1-7.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1725633450.217053/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-7.fc42.src.rpm) Config(child) 1 minutes 53 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python3-ProDy-debuginfo", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "aarch64" }, { "name": "ProDy", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "src" }, { "name": "python3-ProDy", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "aarch64" }, { "name": "ProDy-debugsource", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "aarch64" } ] } RPMResults finished