Warning: Permanently added '54.82.72.197' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6979552-fedora-39-x86_64 --chroot fedora-39-x86_64 Version: 0.70 PID: 6026 Logging PID: 6027 Task: {'appstream': False, 'background': True, 'build_id': 6979552, 'buildroot_pkgs': [], 'chroot': 'fedora-39-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '36d109b9631e4c27dee5a2fc1881d7ecb12e92e1', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.11.1/bout++', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'bout++', 'package_version': '5.1.0-7', 'project_dirname': 'python3-scipy-1.11.1', 'project_name': 'python3-scipy-1.11.1', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/python3-scipy-1.11.1/fedora-39-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/python3-scipy-1.11.1--https://src.fedoraproject.org/user/davidsch', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/davidsch', 'tags': [], 'task_id': '6979552-fedora-39-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.11.1/bout++ /var/lib/copr-rpmbuild/workspace/workdir-gt1h2xpw/bout++ --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.11.1/bout++', '/var/lib/copr-rpmbuild/workspace/workdir-gt1h2xpw/bout++', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-gt1h2xpw/bout++'... Running: git checkout 36d109b9631e4c27dee5a2fc1881d7ecb12e92e1 -- cmd: ['git', 'checkout', '36d109b9631e4c27dee5a2fc1881d7ecb12e92e1', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-gt1h2xpw/bout++ rc: 0 stdout: stderr: Note: switching to '36d109b9631e4c27dee5a2fc1881d7ecb12e92e1'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 36d109b automatic import of bout++ Running: copr-distgit-client sources stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading BOUT++-v5.1.0.tar.gz INFO: Reading stdout from command: curl --help all /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated INFO: Calling: curl -H Pragma: -o BOUT++-v5.1.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/python3-scipy-1.11.1/bout++/BOUT++-v5.1.0.tar.gz/md5/55d4dc965cba0ef23b1bb529b9c84827/BOUT++-v5.1.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 18.0M 100 18.0M 0 0 250M 0 --:--:-- --:--:-- --:--:-- 250M INFO: Reading stdout from command: md5sum BOUT++-v5.1.0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-gt1h2xpw/bout++/bout++.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-gt1h2xpw/bout++ --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1706794837.778670 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.4 starting (python version = 3.11.3, NVR = mock-5.4-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-gt1h2xpw/bout++/bout++.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-gt1h2xpw/bout++ --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1706794837.778670 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-gt1h2xpw/bout++/bout++.spec) Config(fedora-39-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.4 INFO: Mock Version: 5.4 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-bootstrap-1706794837.778670/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:39 INFO: Pulling image: registry.fedoraproject.org/fedora:39 INFO: Copy content of container registry.fedoraproject.org/fedora:39 to /var/lib/mock/fedora-39-x86_64-bootstrap-1706794837.778670/root INFO: Checking that registry.fedoraproject.org/fedora:39 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:39 with podman image mount INFO: image registry.fedoraproject.org/fedora:39 as /var/lib/containers/storage/overlay/8ff7ad910417a7b8a49019008335921d2aac0e3304a19ce258deabf431e59801/merged INFO: umounting image registry.fedoraproject.org/fedora:39 (/var/lib/containers/storage/overlay/8ff7ad910417a7b8a49019008335921d2aac0e3304a19ce258deabf431e59801/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 40 MB/s | 1.9 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 227 MB/s | 73 MB 00:00 fedora 55 MB/s | 89 MB 00:01 updates 65 MB/s | 30 MB 00:00 Package python3-dnf-4.18.1-2.fc39.noarch is already installed. Dependencies resolved. ========================================================================================================================= Package Arch Version Repository Size ========================================================================================================================= Installing: python3-dnf-plugins-core noarch 4.4.4-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 302 k Upgrading: dnf noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 496 k dnf-data noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k python3-dnf noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 549 k yum noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k Installing dependencies: dbus-libs x86_64 1:1.14.10-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 156 k python3-dateutil noarch 1:2.8.2-13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 345 k python3-dbus x86_64 1.3.2-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145 k python3-distro noarch 1.9.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 45 k python3-six noarch 1.16.0-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python3-systemd x86_64 235-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100 k Transaction Summary ========================================================================================================================= Install 7 Packages Upgrade 4 Packages Total download size: 2.2 M Downloading Packages: (1/11): dbus-libs-1.14.10-3.fc40.x86_64.rpm 4.8 MB/s | 156 kB 00:00 (2/11): python3-dbus-1.3.2-6.fc40.x86_64.rpm 4.4 MB/s | 145 kB 00:00 (3/11): python3-distro-1.9.0-3.fc40.noarch.rpm 8.7 MB/s | 45 kB 00:00 (4/11): python3-six-1.16.0-14.fc40.noarch.rpm 7.2 MB/s | 41 kB 00:00 (5/11): python3-dnf-plugins-core-4.4.4-3.fc40.n 25 MB/s | 302 kB 00:00 (6/11): python3-systemd-235-9.fc40.x86_64.rpm 17 MB/s | 100 kB 00:00 (7/11): dnf-data-4.18.2-1.fc40.noarch.rpm 9.0 MB/s | 39 kB 00:00 (8/11): dnf-4.18.2-1.fc40.noarch.rpm 30 MB/s | 496 kB 00:00 (9/11): python3-dnf-4.18.2-1.fc40.noarch.rpm 32 MB/s | 549 kB 00:00 (10/11): yum-4.18.2-1.fc40.noarch.rpm 3.8 MB/s | 37 kB 00:00 (11/11): python3-dateutil-2.8.2-13.fc40.noarch. 4.7 MB/s | 345 kB 00:00 -------------------------------------------------------------------------------- Total 30 MB/s | 2.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Upgrading : dnf-data-4.18.2-1.fc40.noarch 1/15 Upgrading : python3-dnf-4.18.2-1.fc40.noarch 2/15 Upgrading : dnf-4.18.2-1.fc40.noarch 3/15 Running scriptlet: dnf-4.18.2-1.fc40.noarch 3/15 Installing : python3-systemd-235-9.fc40.x86_64 4/15 Installing : python3-six-1.16.0-14.fc40.noarch 5/15 Installing : python3-dateutil-1:2.8.2-13.fc40.noarch 6/15 Installing : python3-distro-1.9.0-3.fc40.noarch 7/15 Installing : dbus-libs-1:1.14.10-3.fc40.x86_64 8/15 Installing : python3-dbus-1.3.2-6.fc40.x86_64 9/15 Installing : python3-dnf-plugins-core-4.4.4-3.fc40.noarch 10/15 Upgrading : yum-4.18.2-1.fc40.noarch 11/15 Cleanup : yum-4.18.1-2.fc39.noarch 12/15 Running scriptlet: dnf-4.18.1-2.fc39.noarch 13/15 Cleanup : dnf-4.18.1-2.fc39.noarch 13/15 Running scriptlet: dnf-4.18.1-2.fc39.noarch 13/15 Cleanup : python3-dnf-4.18.1-2.fc39.noarch 14/15 Cleanup : dnf-data-4.18.1-2.fc39.noarch 15/15 Running scriptlet: dnf-data-4.18.1-2.fc39.noarch 15/15 Verifying : dbus-libs-1:1.14.10-3.fc40.x86_64 1/15 Verifying : python3-dateutil-1:2.8.2-13.fc40.noarch 2/15 Verifying : python3-dbus-1.3.2-6.fc40.x86_64 3/15 Verifying : python3-distro-1.9.0-3.fc40.noarch 4/15 Verifying : python3-dnf-plugins-core-4.4.4-3.fc40.noarch 5/15 Verifying : python3-six-1.16.0-14.fc40.noarch 6/15 Verifying : python3-systemd-235-9.fc40.x86_64 7/15 Verifying : dnf-4.18.2-1.fc40.noarch 8/15 Verifying : dnf-4.18.1-2.fc39.noarch 9/15 Verifying : dnf-data-4.18.2-1.fc40.noarch 10/15 Verifying : dnf-data-4.18.1-2.fc39.noarch 11/15 Verifying : python3-dnf-4.18.2-1.fc40.noarch 12/15 Verifying : python3-dnf-4.18.1-2.fc39.noarch 13/15 Verifying : yum-4.18.2-1.fc40.noarch 14/15 Verifying : yum-4.18.1-2.fc39.noarch 15/15 Upgraded: dnf-4.18.2-1.fc40.noarch dnf-data-4.18.2-1.fc40.noarch python3-dnf-4.18.2-1.fc40.noarch yum-4.18.2-1.fc40.noarch Installed: dbus-libs-1:1.14.10-3.fc40.x86_64 python3-dateutil-1:2.8.2-13.fc40.noarch python3-dbus-1.3.2-6.fc40.x86_64 python3-distro-1.9.0-3.fc40.noarch python3-dnf-plugins-core-4.4.4-3.fc40.noarch python3-six-1.16.0-14.fc40.noarch python3-systemd-235-9.fc40.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1706794837.778670/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.0-1.fc39.x86_64 rpm-sequoia-1.5.0-1.fc39.x86_64 python3-dnf-4.18.2-1.fc40.noarch python3-dnf-plugins-core-4.4.4-3.fc40.noarch yum-4.18.2-1.fc40.noarch Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 53 MB/s | 1.9 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 211 MB/s | 73 MB 00:00 fedora 67 MB/s | 89 MB 00:01 updates 67 MB/s | 30 MB 00:00 Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing group/module packages: bash x86_64 5.2.26-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M bzip2 x86_64 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 52 k coreutils x86_64 9.4-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M cpio x86_64 2.15-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 285 k diffutils x86_64 3.10-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 397 k fedora-release-common noarch 40-0.29 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k findutils x86_64 1:4.9.0-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 482 k gawk x86_64 5.3.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M glibc-minimal-langpack x86_64 2.38.9000-39.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 98 k grep x86_64 3.11-7.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 290 k gzip x86_64 1.13-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 164 k info x86_64 7.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 182 k patch x86_64 2.7.6-24.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 131 k redhat-rpm-config noarch 280-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 75 k rpm-build x86_64 4.19.1-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 70 k sed x86_64 4.9-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 309 k shadow-utils x86_64 2:4.14.0-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M tar x86_64 2:1.35-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 847 k unzip x86_64 6.0-63.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 185 k util-linux x86_64 2.39.3-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M which x86_64 2.21-41.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k xz x86_64 5.4.6-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 531 k Installing dependencies: alternatives x86_64 1.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40 k ansible-srpm-macros noarch 1-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k audit-libs x86_64 4.0-7.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 120 k authselect x86_64 1.5.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144 k authselect-libs x86_64 1.5.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 234 k basesystem noarch 11-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 k binutils x86_64 2.41-32.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.2 M binutils-gold x86_64 2.41-32.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 782 k bzip2-libs x86_64 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k ca-certificates noarch 2023.2.62_v7.0.401-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 862 k coreutils-common x86_64 9.4-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M cracklib x86_64 2.9.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 82 k crypto-policies noarch 20231204-3.git1e3a2e4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 69 k curl x86_64 8.5.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 367 k cyrus-sasl-lib x86_64 2.1.28-19.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 789 k debugedit x86_64 5.0-14.fc40 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krb5-libs-1.21.2-5.fc40.x86_64.rpm 90 MB/s | 751 kB 00:00 (63/152): libarchive-3.7.2-3.fc40.x86_64.rpm 61 MB/s | 407 kB 00:00 (64/152): libattr-2.5.2-3.fc40.x86_64.rpm 3.7 MB/s | 18 kB 00:00 (65/152): libblkid-2.39.3-4.fc40.x86_64.rpm 22 MB/s | 114 kB 00:00 (66/152): libcap-2.69-3.fc40.x86_64.rpm 16 MB/s | 82 kB 00:00 (67/152): libbrotli-1.1.0-3.fc40.x86_64.rpm 52 MB/s | 338 kB 00:00 (68/152): libcap-ng-0.8.4-4.fc40.x86_64.rpm 6.3 MB/s | 33 kB 00:00 (69/152): libcom_err-1.47.0-4.fc40.x86_64.rpm 5.8 MB/s | 26 kB 00:00 (70/152): libcurl-8.5.0-2.fc40.x86_64.rpm 41 MB/s | 343 kB 00:00 (71/152): libeconf-0.5.2-3.fc40.x86_64.rpm 6.2 MB/s | 30 kB 00:00 (72/152): libevent-2.1.12-11.fc40.x86_64.rpm 42 MB/s | 257 kB 00:00 (73/152): libfdisk-2.39.3-4.fc40.x86_64.rpm 33 MB/s | 159 kB 00:00 (74/152): libffi-3.4.4-7.fc40.x86_64.rpm 8.2 MB/s | 39 kB 00:00 (75/152): libgcc-14.0.1-0.4.fc40.x86_64.rpm 24 MB/s | 112 kB 00:00 (76/152): libidn2-2.3.7-1.fc40.x86_64.rpm 22 MB/s | 112 kB 00:00 (77/152): libgomp-14.0.1-0.4.fc40.x86_64.rpm 54 MB/s | 332 kB 00:00 (78/152): libmount-2.39.3-4.fc40.x86_64.rpm 29 MB/s | 154 kB 00:00 (79/152): libnghttp2-1.59.0-2.fc40.x86_64.rpm 17 MB/s | 75 kB 00:00 (80/152): libnsl2-2.0.1-1.fc40.x86_64.rpm 6.4 MB/s | 30 kB 00:00 (81/152): libpkgconf-1.9.5-4.fc40.x86_64.rpm 8.1 MB/s | 37 kB 00:00 (82/152): libpsl-0.21.5-3.fc40.x86_64.rpm 12 MB/s | 64 kB 00:00 (83/152): libselinux-3.6-4.fc40.x86_64.rpm 17 MB/s | 88 kB 00:00 (84/152): libpwquality-1.4.5-9.fc40.x86_64.rpm 18 MB/s | 108 kB 00:00 (85/152): libsemanage-3.6-3.fc40.x86_64.rpm 22 MB/s | 116 kB 00:00 (86/152): libsmartcols-2.39.3-4.fc40.x86_64.rpm 14 MB/s | 68 kB 00:00 (87/152): libsepol-3.6-3.fc40.x86_64.rpm 43 MB/s | 340 kB 00:00 (88/152): libssh-0.10.6-4.fc40.x86_64.rpm 35 MB/s | 211 kB 00:00 (89/152): libssh-config-0.10.6-4.fc40.noarch.rp 2.0 MB/s | 9.0 kB 00:00 (90/152): libstdc++-14.0.1-0.4.fc40.x86_64.rpm 110 MB/s | 871 kB 00:00 (91/152): libtasn1-4.19.0-6.fc40.x86_64.rpm 12 MB/s | 74 kB 00:00 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-8.fc40.x86_64 1/1 Preparing : 1/1 Installing : libgcc-14.0.1-0.4.fc40.x86_64 1/152 Running scriptlet: libgcc-14.0.1-0.4.fc40.x86_64 1/152 Installing : crypto-policies-20231204-3.git1e3a2e4.fc40.noarc 2/152 Running scriptlet: crypto-policies-20231204-3.git1e3a2e4.fc40.noarc 2/152 Installing : fedora-release-identity-basic-40-0.29.noarch 3/152 Installing : fedora-repos-rawhide-40-0.2.noarch 4/152 Installing : fedora-gpg-keys-40-0.2.noarch 5/152 Installing : fedora-repos-40-0.2.noarch 6/152 Installing : fedora-release-common-40-0.29.noarch 7/152 Installing : fedora-release-40-0.29.noarch 8/152 Installing : setup-2.14.5-2.fc40.noarch 9/152 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.5-2.fc40.noarch 9/152 Installing : filesystem-3.18-8.fc40.x86_64 10/152 Installing : basesystem-11-20.fc40.noarch 11/152 Installing : rust-srpm-macros-25.2-4.fc40.noarch 12/152 Installing : 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Installing : debugedit-5.0-14.fc40.x86_64 133/152 Installing : curl-8.5.0-2.fc40.x86_64 134/152 Installing : rpm-sequoia-1.6.0-2.fc40.x86_64 135/152 Installing : rpm-libs-4.19.1-4.fc40.x86_64 136/152 Running scriptlet: rpm-4.19.1-4.fc40.x86_64 137/152 Installing : rpm-4.19.1-4.fc40.x86_64 137/152 Installing : efi-srpm-macros-5-11.fc40.noarch 138/152 Installing : lua-srpm-macros-1-11.fc40.noarch 139/152 Installing : zig-srpm-macros-1-2.fc40.noarch 140/152 Installing : rpm-build-libs-4.19.1-4.fc40.x86_64 141/152 Installing : ansible-srpm-macros-1-14.fc40.noarch 142/152 Installing : fonts-srpm-macros-1:2.0.5-14.fc40.noarch 143/152 Installing : forge-srpm-macros-0.2.0-3.fc40.noarch 144/152 Installing : go-srpm-macros-3.3.1-3.fc40.noarch 145/152 Installing : python-srpm-macros-3.12-7.fc40.noarch 146/152 Installing : redhat-rpm-config-280-1.fc40.noarch 147/152 Installing : rpm-build-4.19.1-4.fc40.x86_64 148/152 Installing : pyproject-srpm-macros-1.12.0-1.fc40.noarch 149/152 Installing : util-linux-2.39.3-4.fc40.x86_64 150/152 Installing : which-2.21-41.fc40.x86_64 151/152 Installing : info-7.1-2.fc40.x86_64 152/152 Running scriptlet: filesystem-3.18-8.fc40.x86_64 152/152 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch 152/152 Running scriptlet: authselect-libs-1.5.0-3.fc40.x86_64 152/152 Running scriptlet: rpm-4.19.1-4.fc40.x86_64 152/152 Running scriptlet: info-7.1-2.fc40.x86_64 152/152 Installed: alternatives-1.26-3.fc40.x86_64 ansible-srpm-macros-1-14.fc40.noarch audit-libs-4.0-7.fc40.x86_64 authselect-1.5.0-3.fc40.x86_64 authselect-libs-1.5.0-3.fc40.x86_64 basesystem-11-20.fc40.noarch bash-5.2.26-2.fc40.x86_64 binutils-2.41-32.fc40.x86_64 binutils-gold-2.41-32.fc40.x86_64 bzip2-1.0.8-18.fc40.x86_64 bzip2-libs-1.0.8-18.fc40.x86_64 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.4-6.fc40.x86_64 coreutils-common-9.4-6.fc40.x86_64 cpio-2.15-1.fc40.x86_64 cracklib-2.9.11-5.fc40.x86_64 crypto-policies-20231204-3.git1e3a2e4.fc40.noarch curl-8.5.0-2.fc40.x86_64 cyrus-sasl-lib-2.1.28-19.fc40.x86_64 debugedit-5.0-14.fc40.x86_64 diffutils-3.10-5.fc40.x86_64 dwz-0.15-5.fc40.x86_64 ed-1.20-2.fc40.x86_64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.190-6.fc40.x86_64 elfutils-debuginfod-client-0.190-6.fc40.x86_64 elfutils-default-yama-scope-0.190-6.fc40.noarch elfutils-libelf-0.190-6.fc40.x86_64 elfutils-libs-0.190-6.fc40.x86_64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.29.noarch fedora-release-common-40-0.29.noarch fedora-release-identity-basic-40-0.29.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-3.fc40.x86_64 file-libs-5.45-3.fc40.x86_64 filesystem-3.18-8.fc40.x86_64 findutils-1:4.9.0-8.fc40.x86_64 fonts-srpm-macros-1:2.0.5-14.fc40.noarch forge-srpm-macros-0.2.0-3.fc40.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.x86_64 gdb-minimal-14.1-6.fc40.x86_64 gdbm-1:1.23-6.fc40.x86_64 gdbm-libs-1:1.23-6.fc40.x86_64 ghc-srpm-macros-1.6.1-5.fc40.noarch glibc-2.38.9000-39.fc40.x86_64 glibc-common-2.38.9000-39.fc40.x86_64 glibc-gconv-extra-2.38.9000-39.fc40.x86_64 glibc-minimal-langpack-2.38.9000-39.fc40.x86_64 gmp-1:6.2.1-8.fc40.x86_64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.3.1-3.fc40.noarch grep-3.11-7.fc40.x86_64 gzip-1.13-1.fc40.x86_64 info-7.1-2.fc40.x86_64 jansson-2.13.1-9.fc40.x86_64 kernel-srpm-macros-1.0-22.fc40.noarch keyutils-libs-1.6.3-3.fc40.x86_64 krb5-libs-1.21.2-5.fc40.x86_64 libacl-2.3.2-1.fc40.x86_64 libarchive-3.7.2-3.fc40.x86_64 libattr-2.5.2-3.fc40.x86_64 libblkid-2.39.3-4.fc40.x86_64 libbrotli-1.1.0-3.fc40.x86_64 libcap-2.69-3.fc40.x86_64 libcap-ng-0.8.4-4.fc40.x86_64 libcom_err-1.47.0-4.fc40.x86_64 libcurl-8.5.0-2.fc40.x86_64 libeconf-0.5.2-3.fc40.x86_64 libevent-2.1.12-11.fc40.x86_64 libfdisk-2.39.3-4.fc40.x86_64 libffi-3.4.4-7.fc40.x86_64 libgcc-14.0.1-0.4.fc40.x86_64 libgomp-14.0.1-0.4.fc40.x86_64 libidn2-2.3.7-1.fc40.x86_64 libmount-2.39.3-4.fc40.x86_64 libnghttp2-1.59.0-2.fc40.x86_64 libnsl2-2.0.1-1.fc40.x86_64 libpkgconf-1.9.5-4.fc40.x86_64 libpsl-0.21.5-3.fc40.x86_64 libpwquality-1.4.5-9.fc40.x86_64 libselinux-3.6-4.fc40.x86_64 libsemanage-3.6-3.fc40.x86_64 libsepol-3.6-3.fc40.x86_64 libsmartcols-2.39.3-4.fc40.x86_64 libssh-0.10.6-4.fc40.x86_64 libssh-config-0.10.6-4.fc40.noarch libstdc++-14.0.1-0.4.fc40.x86_64 libtasn1-4.19.0-6.fc40.x86_64 libtirpc-1.3.4-1.rc2.fc40.2.x86_64 libunistring-1.1-7.fc40.x86_64 libutempter-1.2.1-13.fc40.x86_64 libuuid-2.39.3-4.fc40.x86_64 libverto-0.3.2-8.fc40.x86_64 libxcrypt-4.4.36-5.fc40.x86_64 libxml2-2.12.4-3.fc40.x86_64 libzstd-1.5.5-5.fc40.x86_64 lua-libs-5.4.6-5.fc40.x86_64 lua-srpm-macros-1-11.fc40.noarch lz4-libs-1.9.4-6.fc40.x86_64 mpfr-4.2.1-3.fc40.x86_64 ncurses-base-6.4-11.20240113.fc40.noarch ncurses-libs-6.4-11.20240113.fc40.x86_64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-16.fc40.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-1:3.1.4-4.fc40.x86_64 p11-kit-0.25.3-4.fc40.x86_64 p11-kit-trust-0.25.3-4.fc40.x86_64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.0-1.fc40.x86_64 pam-libs-1.6.0-1.fc40.x86_64 patch-2.7.6-24.fc40.x86_64 pcre2-10.42-2.fc40.2.x86_64 pcre2-syntax-10.42-2.fc40.2.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-1.9.5-4.fc40.x86_64 pkgconf-m4-1.9.5-4.fc40.noarch pkgconf-pkg-config-1.9.5-4.fc40.x86_64 popt-1.19-6.fc40.x86_64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-7.fc40.noarch qt5-srpm-macros-5.15.12-3.fc40.noarch qt6-srpm-macros-6.6.1-5.fc40.noarch readline-8.2-8.fc40.x86_64 redhat-rpm-config-280-1.fc40.noarch rpm-4.19.1-4.fc40.x86_64 rpm-build-4.19.1-4.fc40.x86_64 rpm-build-libs-4.19.1-4.fc40.x86_64 rpm-libs-4.19.1-4.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 rust-srpm-macros-25.2-4.fc40.noarch sed-4.9-1.fc40.x86_64 setup-2.14.5-2.fc40.noarch shadow-utils-2:4.14.0-4.fc40.x86_64 sqlite-libs-3.45.0-2.fc40.x86_64 systemd-libs-255.3-1.fc40.x86_64 tar-2:1.35-3.fc40.x86_64 unzip-6.0-63.fc40.x86_64 util-linux-2.39.3-4.fc40.x86_64 util-linux-core-2.39.3-4.fc40.x86_64 which-2.21-41.fc40.x86_64 xxhash-libs-0.8.2-2.fc40.x86_64 xz-5.4.6-1.fc40.x86_64 xz-libs-5.4.6-1.fc40.x86_64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.x86_64 zlib-ng-compat-2.1.6-2.fc40.x86_64 zstd-1.5.5-5.fc40.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-3.fc40.x86_64 ansible-srpm-macros-1-14.fc40.noarch audit-libs-4.0-7.fc40.x86_64 authselect-1.5.0-3.fc40.x86_64 authselect-libs-1.5.0-3.fc40.x86_64 basesystem-11-20.fc40.noarch bash-5.2.26-2.fc40.x86_64 binutils-2.41-32.fc40.x86_64 binutils-gold-2.41-32.fc40.x86_64 bzip2-1.0.8-18.fc40.x86_64 bzip2-libs-1.0.8-18.fc40.x86_64 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.4-6.fc40.x86_64 coreutils-common-9.4-6.fc40.x86_64 cpio-2.15-1.fc40.x86_64 cracklib-2.9.11-5.fc40.x86_64 crypto-policies-20231204-3.git1e3a2e4.fc40.noarch curl-8.5.0-2.fc40.x86_64 cyrus-sasl-lib-2.1.28-19.fc40.x86_64 debugedit-5.0-14.fc40.x86_64 diffutils-3.10-5.fc40.x86_64 dwz-0.15-5.fc40.x86_64 ed-1.20-2.fc40.x86_64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.190-6.fc40.x86_64 elfutils-debuginfod-client-0.190-6.fc40.x86_64 elfutils-default-yama-scope-0.190-6.fc40.noarch elfutils-libelf-0.190-6.fc40.x86_64 elfutils-libs-0.190-6.fc40.x86_64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.29.noarch fedora-release-common-40-0.29.noarch fedora-release-identity-basic-40-0.29.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-3.fc40.x86_64 file-libs-5.45-3.fc40.x86_64 filesystem-3.18-8.fc40.x86_64 findutils-4.9.0-8.fc40.x86_64 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.2.0-3.fc40.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.x86_64 gdb-minimal-14.1-6.fc40.x86_64 gdbm-1.23-6.fc40.x86_64 gdbm-libs-1.23-6.fc40.x86_64 ghc-srpm-macros-1.6.1-5.fc40.noarch glibc-2.38.9000-39.fc40.x86_64 glibc-common-2.38.9000-39.fc40.x86_64 glibc-gconv-extra-2.38.9000-39.fc40.x86_64 glibc-minimal-langpack-2.38.9000-39.fc40.x86_64 gmp-6.2.1-8.fc40.x86_64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.3.1-3.fc40.noarch grep-3.11-7.fc40.x86_64 gzip-1.13-1.fc40.x86_64 info-7.1-2.fc40.x86_64 jansson-2.13.1-9.fc40.x86_64 kernel-srpm-macros-1.0-22.fc40.noarch keyutils-libs-1.6.3-3.fc40.x86_64 krb5-libs-1.21.2-5.fc40.x86_64 libacl-2.3.2-1.fc40.x86_64 libarchive-3.7.2-3.fc40.x86_64 libattr-2.5.2-3.fc40.x86_64 libblkid-2.39.3-4.fc40.x86_64 libbrotli-1.1.0-3.fc40.x86_64 libcap-2.69-3.fc40.x86_64 libcap-ng-0.8.4-4.fc40.x86_64 libcom_err-1.47.0-4.fc40.x86_64 libcurl-8.5.0-2.fc40.x86_64 libeconf-0.5.2-3.fc40.x86_64 libevent-2.1.12-11.fc40.x86_64 libfdisk-2.39.3-4.fc40.x86_64 libffi-3.4.4-7.fc40.x86_64 libgcc-14.0.1-0.4.fc40.x86_64 libgomp-14.0.1-0.4.fc40.x86_64 libidn2-2.3.7-1.fc40.x86_64 libmount-2.39.3-4.fc40.x86_64 libnghttp2-1.59.0-2.fc40.x86_64 libnsl2-2.0.1-1.fc40.x86_64 libpkgconf-1.9.5-4.fc40.x86_64 libpsl-0.21.5-3.fc40.x86_64 libpwquality-1.4.5-9.fc40.x86_64 libselinux-3.6-4.fc40.x86_64 libsemanage-3.6-3.fc40.x86_64 libsepol-3.6-3.fc40.x86_64 libsmartcols-2.39.3-4.fc40.x86_64 libssh-0.10.6-4.fc40.x86_64 libssh-config-0.10.6-4.fc40.noarch libstdc++-14.0.1-0.4.fc40.x86_64 libtasn1-4.19.0-6.fc40.x86_64 libtirpc-1.3.4-1.rc2.fc40.2.x86_64 libunistring-1.1-7.fc40.x86_64 libutempter-1.2.1-13.fc40.x86_64 libuuid-2.39.3-4.fc40.x86_64 libverto-0.3.2-8.fc40.x86_64 libxcrypt-4.4.36-5.fc40.x86_64 libxml2-2.12.4-3.fc40.x86_64 libzstd-1.5.5-5.fc40.x86_64 lua-libs-5.4.6-5.fc40.x86_64 lua-srpm-macros-1-11.fc40.noarch lz4-libs-1.9.4-6.fc40.x86_64 mpfr-4.2.1-3.fc40.x86_64 ncurses-base-6.4-11.20240113.fc40.noarch ncurses-libs-6.4-11.20240113.fc40.x86_64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-16.fc40.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-3.1.4-4.fc40.x86_64 p11-kit-0.25.3-4.fc40.x86_64 p11-kit-trust-0.25.3-4.fc40.x86_64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.0-1.fc40.x86_64 pam-libs-1.6.0-1.fc40.x86_64 patch-2.7.6-24.fc40.x86_64 pcre2-10.42-2.fc40.2.x86_64 pcre2-syntax-10.42-2.fc40.2.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-1.9.5-4.fc40.x86_64 pkgconf-m4-1.9.5-4.fc40.noarch pkgconf-pkg-config-1.9.5-4.fc40.x86_64 popt-1.19-6.fc40.x86_64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-7.fc40.noarch qt5-srpm-macros-5.15.12-3.fc40.noarch qt6-srpm-macros-6.6.1-5.fc40.noarch readline-8.2-8.fc40.x86_64 redhat-rpm-config-280-1.fc40.noarch rpm-4.19.1-4.fc40.x86_64 rpm-build-4.19.1-4.fc40.x86_64 rpm-build-libs-4.19.1-4.fc40.x86_64 rpm-libs-4.19.1-4.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 rust-srpm-macros-25.2-4.fc40.noarch sed-4.9-1.fc40.x86_64 setup-2.14.5-2.fc40.noarch shadow-utils-4.14.0-4.fc40.x86_64 sqlite-libs-3.45.0-2.fc40.x86_64 systemd-libs-255.3-1.fc40.x86_64 tar-1.35-3.fc40.x86_64 unzip-6.0-63.fc40.x86_64 util-linux-2.39.3-4.fc40.x86_64 util-linux-core-2.39.3-4.fc40.x86_64 which-2.21-41.fc40.x86_64 xxhash-libs-0.8.2-2.fc40.x86_64 xz-5.4.6-1.fc40.x86_64 xz-libs-5.4.6-1.fc40.x86_64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.x86_64 zlib-ng-compat-2.1.6-2.fc40.x86_64 zstd-1.5.5-5.fc40.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1706745600 Wrote: /builddir/build/SRPMS/bout++-5.1.0-7.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1706794837.778670/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-x86_64-1706794837.778670/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1706794837.778670/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-gt1h2xpw/bout++/bout++.spec) Config(child) 1 minutes 28 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/bout++-5.1.0-7.fc40.src.rpm) Config(fedora-39-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-bootstrap-1706794837.778670/root. INFO: reusing tmpfs at /var/lib/mock/fedora-39-x86_64-bootstrap-1706794837.778670/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1706794837.778670/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.0-1.fc39.x86_64 rpm-sequoia-1.5.0-1.fc39.x86_64 python3-dnf-4.18.2-1.fc40.noarch python3-dnf-plugins-core-4.4.4-3.fc40.noarch yum-4.18.2-1.fc40.noarch Finish: chroot init Start: build phase for bout++-5.1.0-7.fc40.src.rpm Start: build setup for bout++-5.1.0-7.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1706745600 Wrote: /builddir/build/SRPMS/bout++-5.1.0-7.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 65 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 157 kB/s | 3.8 kB 00:00 fedora 848 kB/s | 24 kB 00:00 updates 132 kB/s | 21 kB 00:00 Dependencies resolved. =============================================================================================================================================== Package Arch Version Repository Size =============================================================================================================================================== Installing: chrpath x86_64 0.16-23.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30 k cmake x86_64 3.27.7-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.0 M doxygen x86_64 2:1.10.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.3 M environment-modules x86_64 5.3.1-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 692 k fftw-devel x86_64 3.3.10-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 130 k flexiblas-devel x86_64 3.4.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 108 k fmt-devel x86_64 10.2.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 126 k gcc-c++ x86_64 14.0.1-0.4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14 M gettext-devel x86_64 0.22-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 224 k hdf5-devel x86_64 1.12.1-15.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 M hdf5-mpich-devel x86_64 1.12.1-15.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 M hdf5-openmpi-devel x86_64 1.12.1-15.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 M m4 x86_64 1.4.19-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 298 k make x86_64 1:4.4.1-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 580 k mpark-variant-devel x86_64 1.4.0-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 27 k mpich-devel x86_64 4.1.2-12.fc40 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Creating group 'kvm' with GID 36. Creating group 'render' with GID 105. Creating group 'sgx' with GID 106. Creating group 'systemd-journal' with GID 190. Creating group 'systemd-oom' with GID 999. Creating user 'systemd-oom' (systemd Userspace OOM Killer) with UID 999 and GID 999. Running scriptlet: logrotate-3.21.0-6.fc40.x86_64 238/373 Installing : logrotate-3.21.0-6.fc40.x86_64 238/373 Running scriptlet: logrotate-3.21.0-6.fc40.x86_64 238/373 Created symlink /etc/systemd/system/timers.target.wants/logrotate.timer → /usr/lib/systemd/system/logrotate.timer. 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Installing : cmake-data-3.27.7-1.fc40.noarch 290/373 Installing : MUMPS-mpich-5.6.2-3.fc40.x86_64 291/373 Installing : hdf5-mpich-devel-1.12.1-15.fc40.x86_64 292/373 Installing : python3-dateutil-1:2.8.2-13.fc40.noarch 293/373 Installing : hdf5-openmpi-devel-1.12.1-15.fc40.x86_64 294/373 Installing : superlu_dist-openmpi-1:8.2.0-2.fc40.x86_64 295/373 Installing : superlu_dist-openmpi-devel-1:8.2.0-2.fc40.x86_64 296/373 Installing : hypre-openmpi-2.24.0-11.fc40.x86_64 297/373 Installing : petsc-openmpi-3.20.2-5.fc40.x86_64 298/373 Installing : sundials-openmpi-6.6.2-6.fc40.x86_64 299/373 Installing : python3-rpm-generators-14-10.fc40.noarch 300/373 Installing : python3-devel-3.12.1-4.fc40.x86_64 301/373 Installing : python3-numpy-f2py-1:1.26.2-4.fc40.x86_64 302/373 Installing : ptscotch-mpich-devel-parmetis-7.0.4-3.fc40.x86_6 303/373 Installing : superlu_dist-mpich-1:8.2.0-2.fc40.x86_64 304/373 Installing : superlu_dist-mpich-devel-1:8.2.0-2.fc40.x86_64 305/373 Installing : 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python3-snowballstemmer-2.2.0-8.fc40.noarch 339/373 Installing : python3-sphinx-theme-alabaster-0.7.16-3.fc40.noa 340/373 Installing : gd-2.3.3-15.fc40.x86_64 341/373 Installing : libgs-10.02.1-8.fc40.x86_64 342/373 Installing : graphviz-9.0.0-10.fc40.x86_64 343/373 Installing : libraqm-0.8.0-7.fc40.x86_64 344/373 Installing : python3-pillow-10.2.0-3.fc40.x86_64 345/373 Installing : python3-pillow-tk-10.2.0-3.fc40.x86_64 346/373 Installing : python3-matplotlib-3.8.2-4.fc40.x86_64 347/373 Installing : python3-matplotlib-tk-3.8.2-4.fc40.x86_64 348/373 Installing : python3-boututils-0.2.1-3.fc40.noarch 349/373 Installing : python3-mpmath-1.3.0-7.fc40.noarch 350/373 Installing : python3-sympy-1.12-4.fc40.x86_64 351/373 Installing : python3-boutdata-0.1.10-7.fc40.noarch 352/373 Installing : python3-zoidberg-0.1.1-5.fc40.noarch 353/373 Installing : doxygen-2:1.10.0-3.fc40.x86_64 354/373 Installing : python3-sphinx-1:7.2.6-6.fc40.noarch 355/373 Installing : python3-tables-3.9.2-4.fc40.x86_64 356/373 Installing : sundials-mpich-devel-6.6.2-6.fc40.x86_64 357/373 Installing : petsc-mpich-devel-3.20.2-5.fc40.x86_64 358/373 Installing : sundials-openmpi-devel-6.6.2-6.fc40.x86_64 359/373 Installing : petsc-openmpi-devel-3.20.2-5.fc40.x86_64 360/373 Installing : sundials-devel-6.6.2-6.fc40.x86_64 361/373 Installing : annobin-plugin-gcc-12.38-1.fc40.x86_64 362/373 Running scriptlet: annobin-plugin-gcc-12.38-1.fc40.x86_64 362/373 Installing : fmt-devel-10.2.1-3.fc40.x86_64 363/373 Installing : netcdf-cxx4-devel-4.3.1-12.fc40.x86_64 364/373 Installing : gcc-c++-14.0.1-0.4.fc40.x86_64 365/373 Installing : gcc-plugin-annobin-14.0.1-0.4.fc40.x86_64 366/373 Running scriptlet: gcc-plugin-annobin-14.0.1-0.4.fc40.x86_64 366/373 Installing : gettext-devel-0.22-4.fc40.x86_64 367/373 Installing : flexiblas-devel-3.4.1-3.fc40.x86_64 368/373 Installing : fftw-devel-3.3.10-11.fc40.x86_64 369/373 Installing : mpark-variant-devel-1.4.0-12.fc40.x86_64 370/373 Installing : systemd-rpm-macros-255.3-1.fc40.noarch 371/373 Installing : m4-1.4.19-9.fc40.x86_64 372/373 Installing : chrpath-0.16-23.fc40.x86_64 373/373 Running scriptlet: urw-base35-bookman-fonts-20200910-19.fc40.noarch 373/373 Running scriptlet: urw-base35-c059-fonts-20200910-19.fc40.noarch 373/373 Running scriptlet: urw-base35-d050000l-fonts-20200910-19.fc40.noarc 373/373 Running scriptlet: urw-base35-gothic-fonts-20200910-19.fc40.noarch 373/373 Running scriptlet: urw-base35-nimbus-mono-ps-fonts-20200910-19.fc40 373/373 Running scriptlet: urw-base35-nimbus-roman-fonts-20200910-19.fc40.n 373/373 Running scriptlet: urw-base35-nimbus-sans-fonts-20200910-19.fc40.no 373/373 Running scriptlet: urw-base35-p052-fonts-20200910-19.fc40.noarch 373/373 Running scriptlet: urw-base35-standard-symbols-ps-fonts-20200910-19 373/373 Running scriptlet: urw-base35-z003-fonts-20200910-19.fc40.noarch 373/373 Running scriptlet: fontconfig-2.15.0-3.fc40.x86_64 373/373 Running scriptlet: crypto-policies-scripts-20231204-3.git1e3a2e4.fc 373/373 Running scriptlet: nss-3.97.0-1.fc40.x86_64 373/373 Running scriptlet: chrpath-0.16-23.fc40.x86_64 373/373 Installed: MUMPS-common-5.6.2-3.fc40.noarch MUMPS-mpich-5.6.2-3.fc40.x86_64 MUMPS-openmpi-5.6.2-3.fc40.x86_64 SuperLUMT-common-3.1.0-38.fc40.noarch SuperLUMT64-double-3.1.0-38.fc40.x86_64 abattis-cantarell-vf-fonts-0.301-12.fc40.noarch adobe-mappings-cmap-20230622-3.fc40.noarch adobe-mappings-cmap-deprecated-20230622-3.fc40.noarch adobe-mappings-pdf-20190401-7.fc40.noarch annobin-docs-12.38-1.fc40.noarch annobin-plugin-gcc-12.38-1.fc40.x86_64 avahi-libs-0.8-26.fc40.x86_64 blosc-1.21.5-4.fc40.x86_64 blosc2-2.13.1-1.fc40.x86_64 cairo-1.18.0-3.fc40.x86_64 cairo-gobject-1.18.0-3.fc40.x86_64 chrpath-0.16-23.fc40.x86_64 cmake-3.27.7-1.fc40.x86_64 cmake-data-3.27.7-1.fc40.noarch cmake-filesystem-3.27.7-1.fc40.x86_64 cmake-rpm-macros-3.27.7-1.fc40.noarch cpp-14.0.1-0.4.fc40.x86_64 crypto-policies-scripts-20231204-3.git1e3a2e4.fc40.noarch cups-libs-1:2.4.7-9.fc40.x86_64 dbus-1:1.14.10-3.fc40.x86_64 dbus-broker-35-4.fc40.x86_64 dbus-common-1:1.14.10-3.fc40.noarch dbus-libs-1:1.14.10-3.fc40.x86_64 default-fonts-core-sans-4.0-11.fc40.noarch dejavu-sans-fonts-2.37-23.fc40.noarch doxygen-2:1.10.0-3.fc40.x86_64 emacs-filesystem-1:29.2-3.fc40.noarch environment-modules-5.3.1-4.fc40.x86_64 expat-2.5.0-5.fc40.x86_64 fftw-3.3.10-11.fc40.x86_64 fftw-devel-3.3.10-11.fc40.x86_64 fftw-libs-3.3.10-11.fc40.x86_64 fftw-libs-double-3.3.10-11.fc40.x86_64 fftw-libs-long-3.3.10-11.fc40.x86_64 fftw-libs-quad-3.3.10-11.fc40.x86_64 fftw-libs-single-3.3.10-11.fc40.x86_64 flexiblas-3.4.1-3.fc40.x86_64 flexiblas-devel-3.4.1-3.fc40.x86_64 flexiblas-netlib-3.4.1-3.fc40.x86_64 flexiblas-netlib64-3.4.1-3.fc40.x86_64 flexiblas-openblas-openmp-3.4.1-3.fc40.x86_64 flexiblas-openblas-openmp64-3.4.1-3.fc40.x86_64 fmt-10.2.1-3.fc40.x86_64 fmt-devel-10.2.1-3.fc40.x86_64 fontconfig-2.15.0-3.fc40.x86_64 fonts-filesystem-1:2.0.5-14.fc40.noarch freetype-2.13.2-4.fc40.x86_64 fribidi-1.0.13-4.fc40.x86_64 gc-8.2.2-6.fc40.x86_64 gcc-14.0.1-0.4.fc40.x86_64 gcc-c++-14.0.1-0.4.fc40.x86_64 gcc-gfortran-14.0.1-0.4.fc40.x86_64 gcc-plugin-annobin-14.0.1-0.4.fc40.x86_64 gd-2.3.3-15.fc40.x86_64 gdk-pixbuf2-2.42.10-8.fc40.x86_64 gettext-0.22-4.fc40.x86_64 gettext-common-devel-0.22-4.fc40.noarch gettext-devel-0.22-4.fc40.x86_64 gettext-envsubst-0.22-4.fc40.x86_64 gettext-libs-0.22-4.fc40.x86_64 gettext-runtime-0.22-4.fc40.x86_64 glib2-2.79.1-1.fc40.x86_64 glibc-devel-2.38.9000-39.fc40.x86_64 glibc-headers-x86-2.38.9000-39.fc40.noarch gnutls-3.8.3-2.fc40.x86_64 google-droid-sans-fonts-20200215-19.fc40.noarch google-noto-fonts-common-20240101-1.fc40.noarch google-noto-sans-vf-fonts-20240101-1.fc40.noarch graphite2-1.3.14-15.fc40.x86_64 graphviz-9.0.0-10.fc40.x86_64 groff-base-1.23.0-6.fc40.x86_64 gts-0.7.6-48.20121130.fc40.x86_64 guile30-3.0.7-12.fc40.x86_64 harfbuzz-8.3.0-5.fc40.x86_64 hdf-libs-4.2.15-16.fc40.x86_64 hdf5-1.12.1-15.fc40.x86_64 hdf5-devel-1.12.1-15.fc40.x86_64 hdf5-mpich-1.12.1-15.fc40.x86_64 hdf5-mpich-devel-1.12.1-15.fc40.x86_64 hdf5-openmpi-1.12.1-15.fc40.x86_64 hdf5-openmpi-devel-1.12.1-15.fc40.x86_64 highway-1.0.7-3.fc40.x86_64 hwloc-libs-2.10.0-3.fc40.x86_64 hypre-mpich-2.24.0-11.fc40.x86_64 hypre-openmpi-2.24.0-11.fc40.x86_64 jbig2dec-libs-0.20-4.fc40.x86_64 jbigkit-libs-2.1-29.fc40.x86_64 jsoncpp-1.9.5-7.fc40.x86_64 kernel-headers-6.8.0-0.rc1.12.fc40.1.x86_64 kmod-libs-31-5.fc40.x86_64 lasi-1.1.3-13.fc40.x86_64 lcms2-2.16-3.fc40.x86_64 less-643-3.fc40.x86_64 libICE-1.1.1-3.fc40.x86_64 libSM-1.2.4-3.fc40.x86_64 libX11-1.8.7-3.fc40.x86_64 libX11-common-1.8.7-3.fc40.noarch libXau-1.0.11-6.fc40.x86_64 libXext-1.3.5-6.fc40.x86_64 libXft-2.3.8-6.fc40.x86_64 libXpm-3.5.17-3.fc40.x86_64 libXrender-0.9.11-6.fc40.x86_64 libXt-1.3.0-3.fc40.x86_64 libaec-1.0.6-7.fc40.x86_64 libaec-devel-1.0.6-7.fc40.x86_64 libaom-3.8.0-3.fc40.x86_64 libavif-1.0.3-1.fc40.x86_64 libb2-0.98.1-11.fc40.x86_64 libcbor-0.10.2-5.fc40.x86_64 libcurl-devel-8.5.0-2.fc40.x86_64 libdatrie-0.2.13-9.fc40.x86_64 libdav1d-1.3.0-3.fc40.x86_64 libedit-3.1-50.20230828cvs.fc40.x86_64 libfabric-1.19.0-1.fc40.x86_64 libfido2-1.14.0-3.fc40.x86_64 libgfortran-14.0.1-0.4.fc40.x86_64 libgs-10.02.1-8.fc40.x86_64 libibverbs-48.0-4.fc40.x86_64 libijs-0.35-22.fc40.x86_64 libimagequant-4.0.3-3.fc40.x86_64 libjpeg-turbo-2.1.4-6.fc40.x86_64 libjxl-1:0.8.2-3.fc40.x86_64 liblerc-4.0.0-6.fc40.x86_64 libmpc-1.3.1-5.fc40.x86_64 libnl3-3.9.0-3.fc40.x86_64 libpaper-1:2.1.1-3.fc40.x86_64 libpipeline-1.5.7-5.fc40.x86_64 libpng-2:1.6.40-3.fc40.x86_64 libpsm2-11.2.230-4.fc40.x86_64 libqhull_r-1:8.0.2-4.fc40.x86_64 libquadmath-14.0.1-0.4.fc40.x86_64 libquadmath-devel-14.0.1-0.4.fc40.x86_64 libraqm-0.8.0-7.fc40.x86_64 librdmacm-48.0-4.fc40.x86_64 librsvg2-2.57.1-3.fc40.x86_64 libseccomp-2.5.3-8.fc40.x86_64 libstdc++-devel-14.0.1-0.4.fc40.x86_64 libthai-0.1.29-8.fc40.x86_64 libtiff-4.6.0-2.fc40.x86_64 libtool-ltdl-2.4.7-10.fc40.x86_64 libuv-1:1.47.0-6.fc40.x86_64 libvmaf-2.3.0-7.fc40.x86_64 libwebp-1.3.2-4.fc40.x86_64 libxcb-1.16-4.fc40.x86_64 libxcrypt-devel-4.4.36-5.fc40.x86_64 libxslt-1.1.39-3.fc40.x86_64 logrotate-3.21.0-6.fc40.x86_64 lzo-2.10-12.fc40.x86_64 m4-1.4.19-9.fc40.x86_64 make-1:4.4.1-6.fc40.x86_64 man-db-2.12.0-6.fc40.x86_64 metis-5.1.0.3-5.fc40.x86_64 mpark-variant-devel-1.4.0-12.fc40.x86_64 mpdecimal-2.5.1-9.fc40.x86_64 mpich-4.1.2-12.fc40.x86_64 mpich-devel-4.1.2-12.fc40.x86_64 munge-0.5.15-7.fc40.x86_64 munge-libs-0.5.15-7.fc40.x86_64 ncurses-6.4-11.20240113.fc40.x86_64 netcdf-4.9.2-5.fc40.x86_64 netcdf-cxx4-4.3.1-12.fc40.x86_64 netcdf-cxx4-devel-4.3.1-12.fc40.x86_64 netcdf-devel-4.9.2-5.fc40.x86_64 netpbm-11.02.00-6.fc40.x86_64 nettle-3.9.1-6.fc40.x86_64 nspr-4.35.0-20.fc40.x86_64 nss-3.97.0-1.fc40.x86_64 nss-softokn-3.97.0-1.fc40.x86_64 nss-softokn-freebl-3.97.0-1.fc40.x86_64 nss-sysinit-3.97.0-1.fc40.x86_64 nss-util-3.97.0-1.fc40.x86_64 numactl-libs-2.0.16-5.fc40.x86_64 openblas-0.3.26-1.fc40.x86_64 openblas-openmp-0.3.26-1.fc40.x86_64 openblas-openmp64-0.3.26-1.fc40.x86_64 openjpeg2-2.5.0-7.fc40.x86_64 openmpi-5.0.1-3.fc40.x86_64 openmpi-devel-5.0.1-3.fc40.x86_64 openssh-9.6p1-1.fc40.2.x86_64 openssh-clients-9.6p1-1.fc40.2.x86_64 orangefs-2.9.8-11.fc40.x86_64 pango-1.51.0-3.fc40.x86_64 perl-AutoLoader-5.74-506.fc40.noarch perl-B-1.88-506.fc40.x86_64 perl-Carp-1.54-502.fc40.noarch perl-Class-Struct-0.68-506.fc40.noarch perl-Data-Dumper-2.188-503.fc40.x86_64 perl-Digest-1.20-502.fc40.noarch perl-Digest-MD5-2.59-3.fc40.x86_64 perl-DynaLoader-1.54-506.fc40.x86_64 perl-Encode-4:3.20-503.fc40.x86_64 perl-Errno-1.37-506.fc40.x86_64 perl-Exporter-5.78-3.fc40.noarch perl-Fcntl-1.15-506.fc40.x86_64 perl-File-Basename-2.86-506.fc40.noarch perl-File-Path-2.18-503.fc40.noarch perl-File-Temp-1:0.231.100-503.fc40.noarch perl-File-stat-1.13-506.fc40.noarch perl-FileHandle-2.05-506.fc40.noarch perl-Getopt-Long-1:2.57-3.fc40.noarch perl-Getopt-Std-1.13-506.fc40.noarch perl-HTTP-Tiny-0.088-5.fc40.noarch perl-IO-1.52-506.fc40.x86_64 perl-IO-Socket-IP-0.42-2.fc40.noarch perl-IO-Socket-SSL-2.085-1.fc40.noarch perl-IPC-Open3-1.22-506.fc40.noarch perl-MIME-Base64-3.16-503.fc40.x86_64 perl-Mozilla-CA-20231213-3.fc40.noarch perl-Net-SSLeay-1.94-3.fc40.x86_64 perl-POSIX-2.13-506.fc40.x86_64 perl-PathTools-3.89-502.fc40.x86_64 perl-Pod-Escapes-1:1.07-503.fc40.noarch perl-Pod-Perldoc-3.28.01-503.fc40.noarch perl-Pod-Simple-1:3.45-6.fc40.noarch perl-Pod-Usage-4:2.03-502.fc40.noarch perl-Scalar-List-Utils-5:1.63-502.fc40.x86_64 perl-SelectSaver-1.02-506.fc40.noarch perl-Socket-4:2.037-5.fc40.x86_64 perl-Storable-1:3.32-502.fc40.x86_64 perl-Symbol-1.09-506.fc40.noarch perl-Term-ANSIColor-5.01-504.fc40.noarch perl-Term-Cap-1.18-502.fc40.noarch perl-Text-ParseWords-3.31-502.fc40.noarch perl-Text-Tabs+Wrap-2023.0511-5.fc40.noarch perl-Time-Local-2:1.350-5.fc40.noarch perl-URI-5.25-1.fc40.noarch perl-base-2.27-506.fc40.noarch perl-constant-1.33-503.fc40.noarch perl-if-0.61.000-506.fc40.noarch perl-interpreter-4:5.38.2-506.fc40.x86_64 perl-libnet-3.15-503.fc40.noarch perl-libs-4:5.38.2-506.fc40.x86_64 perl-locale-1.10-506.fc40.noarch perl-mro-1.28-506.fc40.x86_64 perl-overload-1.37-506.fc40.noarch perl-overloading-0.02-506.fc40.noarch perl-parent-1:0.241-502.fc40.noarch perl-podlators-1:5.01-502.fc40.noarch perl-vars-1.05-506.fc40.noarch petsc-mpich-3.20.2-5.fc40.x86_64 petsc-mpich-devel-3.20.2-5.fc40.x86_64 petsc-openmpi-3.20.2-5.fc40.x86_64 petsc-openmpi-devel-3.20.2-5.fc40.x86_64 pixman-0.43.0-3.fc40.x86_64 pmix-4.2.8-2.fc40.x86_64 poppler-23.08.0-3.fc40.x86_64 poppler-data-0.4.11-7.fc40.noarch poppler-glib-23.08.0-3.fc40.x86_64 procps-ng-4.0.4-3.fc40.x86_64 prrte-3.0.2-3.fc40.x86_64 prrte-libs-3.0.2-3.fc40.x86_64 ptscotch-mpich-7.0.4-3.fc40.x86_64 ptscotch-mpich-devel-7.0.4-3.fc40.x86_64 ptscotch-mpich-devel-parmetis-7.0.4-3.fc40.x86_64 ptscotch-openmpi-7.0.4-3.fc40.x86_64 ptscotch-openmpi-devel-7.0.4-3.fc40.x86_64 pyproject-rpm-macros-1.12.0-1.fc40.noarch python-pip-wheel-23.3.2-1.fc40.noarch python-rpm-macros-3.12-7.fc40.noarch python3-3.12.1-4.fc40.x86_64 python3-appdirs-1.4.4-13.fc40.noarch python3-babel-2.13.1-3.fc40.noarch python3-blosc2-2.5.1-1.fc40.x86_64 python3-boutdata-0.1.10-7.fc40.noarch python3-boututils-0.2.1-3.fc40.noarch python3-brotli-1.1.0-3.fc40.x86_64 python3-cairo-1.25.1-3.fc40.x86_64 python3-certifi-2023.05.07-4.fc40.noarch python3-cftime-1.6.3-3.fc40.x86_64 python3-charset-normalizer-3.3.2-3.fc40.noarch python3-contourpy-1.2.0-3.fc40.x86_64 python3-cpuinfo-9.0.0-7.fc40.noarch python3-cycler-0.11.0-11.fc40.noarch python3-cython-3.0.8-1.fc40.x86_64 python3-dateutil-1:2.8.2-13.fc40.noarch python3-devel-3.12.1-4.fc40.x86_64 python3-docutils-0.20.1-3.fc40.noarch python3-fonttools-4.47.2-4.fc40.x86_64 python3-fs-2.4.16-7.fc40.noarch python3-idna-3.6-3.fc40.noarch python3-imagesize-1.4.1-7.fc40.noarch python3-jinja2-3.1.3-3.fc40.noarch python3-kiwisolver-1.4.5-3.fc40.x86_64 python3-libs-3.12.1-4.fc40.x86_64 python3-lxml-4.9.4-1.fc40.x86_64 python3-markupsafe-2.1.3-4.fc40.x86_64 python3-matplotlib-3.8.2-4.fc40.x86_64 python3-matplotlib-data-3.8.2-4.fc40.noarch python3-matplotlib-data-fonts-3.8.2-4.fc40.noarch python3-matplotlib-tk-3.8.2-4.fc40.x86_64 python3-mpmath-1.3.0-7.fc40.noarch python3-msgpack-1.0.7-3.fc40.x86_64 python3-natsort-7.1.1-12.fc40.noarch python3-ndindex-1.7-11.fc40.x86_64 python3-netcdf4-1.6.5-1.fc40.x86_64 python3-numexpr-2.8.5-4.fc40.x86_64 python3-numpy-1:1.26.2-4.fc40.x86_64 python3-numpy-f2py-1:1.26.2-4.fc40.x86_64 python3-olefile-0.47-3.fc40.noarch python3-packaging-23.2-4.fc40.noarch python3-pillow-10.2.0-3.fc40.x86_64 python3-pillow-tk-10.2.0-3.fc40.x86_64 python3-pooch-1.5.2-15.fc40.noarch python3-pygments-2.17.2-3.fc40.noarch python3-pyparsing-3.1.1-3.fc40.noarch python3-requests-2.31.0-3.fc40.noarch python3-rpm-generators-14-10.fc40.noarch python3-rpm-macros-3.12-7.fc40.noarch python3-scipy-1.11.3-6.fc40.x86_64 python3-setuptools-68.2.2-3.fc40.noarch python3-six-1.16.0-14.fc40.noarch python3-snowballstemmer-2.2.0-8.fc40.noarch python3-sphinx-1:7.2.6-6.fc40.noarch python3-sphinx-theme-alabaster-0.7.16-3.fc40.noarch python3-sympy-1.12-4.fc40.x86_64 python3-tables-3.9.2-4.fc40.x86_64 python3-tkinter-3.12.1-4.fc40.x86_64 python3-urllib3-1.26.18-3.fc40.noarch python3-zoidberg-0.1.1-5.fc40.noarch rav1e-libs-0.6.6-5.fc40.x86_64 rhash-1.4.3-4.fc40.x86_64 rpm-mpi-hooks-8-8.fc40.noarch rsvg-pixbuf-loader-2.57.1-3.fc40.x86_64 scalapack-common-2.2.0-8.fc40.x86_64 scalapack-mpich-2.2.0-8.fc40.x86_64 scalapack-openmpi-2.2.0-8.fc40.x86_64 shared-mime-info-2.3-3.fc40.x86_64 snappy-1.1.10-4.fc40.x86_64 suitesparse-5.13.0-5.fc40.x86_64 suitesparse64-5.13.0-5.fc40.x86_64 sundials-6.6.2-6.fc40.x86_64 sundials-devel-6.6.2-6.fc40.x86_64 sundials-mpich-6.6.2-6.fc40.x86_64 sundials-mpich-devel-6.6.2-6.fc40.x86_64 sundials-openmpi-6.6.2-6.fc40.x86_64 sundials-openmpi-devel-6.6.2-6.fc40.x86_64 superlu_dist-mpich-1:8.2.0-2.fc40.x86_64 superlu_dist-mpich-devel-1:8.2.0-2.fc40.x86_64 superlu_dist-openmpi-1:8.2.0-2.fc40.x86_64 superlu_dist-openmpi-devel-1:8.2.0-2.fc40.x86_64 svt-av1-libs-1.4.1-5.fc40.x86_64 systemd-255.3-1.fc40.x86_64 systemd-pam-255.3-1.fc40.x86_64 systemd-rpm-macros-255.3-1.fc40.noarch tcl-1:8.6.13-2.fc40.x86_64 tcsh-6.24.10-3.fc40.x86_64 tk-1:8.6.13-3.fc40.x86_64 torque-libs-6.1.3-10.fc40.x86_64 tzdata-2023d-3.fc40.noarch ucx-1.15.0-2.fc40.x86_64 urw-base35-bookman-fonts-20200910-19.fc40.noarch urw-base35-c059-fonts-20200910-19.fc40.noarch urw-base35-d050000l-fonts-20200910-19.fc40.noarch urw-base35-fonts-20200910-19.fc40.noarch urw-base35-fonts-common-20200910-19.fc40.noarch urw-base35-gothic-fonts-20200910-19.fc40.noarch urw-base35-nimbus-mono-ps-fonts-20200910-19.fc40.noarch urw-base35-nimbus-roman-fonts-20200910-19.fc40.noarch urw-base35-nimbus-sans-fonts-20200910-19.fc40.noarch urw-base35-p052-fonts-20200910-19.fc40.noarch urw-base35-standard-symbols-ps-fonts-20200910-19.fc40.noarch urw-base35-z003-fonts-20200910-19.fc40.noarch vim-filesystem-2:9.1.031-2.fc40.noarch xapian-core-libs-1.4.23-2.fc40.x86_64 xml-common-0.6.3-63.fc40.noarch yaksa-0.3-5.fc40.x86_64 zlib-ng-2.1.6-2.fc40.x86_64 zlib-ng-compat-devel-2.1.6-2.fc40.x86_64 Complete! Finish: build setup for bout++-5.1.0-7.fc40.src.rpm Start: rpmbuild bout++-5.1.0-7.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1706745600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.M9CQDc + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf BOUT++-v5.1.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/BOUT++-v5.1.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd BOUT++-v5.1.0 + rm -rf /builddir/build/BUILD/BOUT++-v5.1.0-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/BOUT++-v5.1.0-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-fmt10.patch + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-sphinx.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/test-timeout.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -e 's/html_theme = "sphinx_book_theme"/html_theme = "sphinxdoc"/' -i manual/sphinx/conf.py + rm -rf externalpackages/mpark.variant/ + mkdir -p externalpackages/mpark.variant/include/ + rm -rf tools/pylib/boutdata + rm -rf tools/pylib/boututils ++ find -L tools/pylib/ -type f ++ grep -v _boutcore_build + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/rms.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/read_inp.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/read_cxx.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_present.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_nonlinear.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_draw.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_corral.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/grate2.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/basic_info.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/__init__.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/ListDict.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.in + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.cin + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/setup.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/scan_enums.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/resolve_enum_inv.pyx.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/resolve_enum.pxd.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/other_enums.hxx + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.h.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.cxx.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/geninput.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/generate.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/debug_setup.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/debug_helper.hxx + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp_openmpi_compat.hxx + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp.pyx.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutexception_helper.hxx + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutexception_helper.cxx + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutcpp.pxd.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/bout_options.pxd + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/backend.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/Makefile + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/GENERATION.md + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/CMakeLists.txt + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/.gitignore + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/README.md + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/Makefile + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/.gitignore + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.fErrOq + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BOUT++-v5.1.0 + export CC=mpicc + CC=mpicc + export CXX=mpicxx + CXX=mpicxx + for mpi in openmpi mpich + mkdir build_openmpi + for mpi in openmpi mpich + mkdir build_mpich + for mpi in openmpi mpich + '[' openmpi = mpich ']' + '[' openmpi = openmpi ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH; MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN; MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES; CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=mpicc + export CC + CXX=mpicxx + export CXX + /usr/bin/cmake -S . -B build_openmpi -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBOUT_USE_FFTW=ON -DBOUT_USE_NETCDF=ON -DBOUT_USE_SCOREP=OFF -DBOUT_USE_SYSTEM_MPARK_VARIANT=ON -DBOUT_USE_LAPACK=ON -DBOUT_USE_NLS=ON -DBOUT_USE_SYSTEM_FMT=ON -DBOUT_USE_UUID_SYSTEM_GENERATOR=ON -DCMAKE_INSTALL_PREFIX=/ -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_INCLUDEDIR=/usr/include/openmpi-x86_64/bout++/ -DCMAKE_INSTALL_DATAROOTDIR=/usr/share -DCMAKE_INSTALL_PYTHON_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi -DBOUT_TEST_TIMEOUT=900 -DBOUT_BUILD_DOCS=ON -DBOUT_USE_PETSC=ON -DBOUT_USE_SUNDIALS=ON -- Configuring BOUT++ version 5.2.0 -- The CXX compiler identification is GNU 14.0.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/lib64/openmpi/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python3: /usr/bin/python3.12 (found version "3.12.1") found components: Interpreter -- Could NOT find ClangFormat (missing: ClangFormat_BIN) CMake Warning (dev) at CMakeLists.txt:391 (message): 'src/field/generated_fieldops.cxx' will not be regenerated when you make changes to either 'src/field/gen_fieldops.py' or 'src/field/gen_fieldops.jinja'. This is because either Python3 or clang-format is missing (see above messages for more information) or BOUT_GENERATE_FIELDOPS is OFF (current value: OFF). This warning is only important for BOUT++ developers and can otherwise be safely ignored. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Python: /usr/bin/python3.12 (found suitable version "3.12.1", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed -- Found Numpy: /usr/include (found version "1.26.2") -- Found Cython: TRUE (found version "3.0.8") -- Found Bash: /usr/bin/bash (found version "5.2.26") -- Building BOUT++ Python interface -- Found MPI_CXX: /usr/lib64/openmpi/bin/mpicxx (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Enable OpenMP: OFF -- HYPRE support: OFF -- Found PkgConfig: /usr/bin/pkg-config (found version "1.9.5") -- Checking for one of the modules 'PETSc>3.4.0;petsc>3.4.0' -- Found PETSc: /usr/include/openmpi-x86_64/petsc -- PETSc support: ON -- Using external mpark.variant -- Using external fmt -- PVODE support: ON -- Found netCDF: /usr/lib64/libnetcdf.so (found version "4.9.2") -- Found netCDFCxx version 4.3.1 -- Found netCDFCxx: /usr/lib64/libnetcdf_c++4.so (found version "4.3.1") -- NetCDF support: ON -- Found FFTW: /usr/lib64/libfftw3.so -- FFTW support: ON -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib64/libflexiblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/lib64/libflexiblas.so;-lm;-ldl -- LAPACK support: TRUE -- SLEPc support: OFF -- SUNDIALS support: ON -- Found Gettext: /usr/bin/msgmerge (found version "0.22") -- Found Intl: built in to C library -- libuuid not found, using fallback UUID generator -- UUID_SYSTEM_GENERATOR: FALSE -- Enable coverage: OFF -- Git revision: Unknown -- Performing Test HAS_FLAG__Wnull_dereference -- Performing Test HAS_FLAG__Wnull_dereference - Success -- Warning flag is supported by compiler: -Wnull-dereference -- Found negative flag: -Wno-cast-function-type replaced with -Wcast-function-type -- Performing Test HAS_FLAG__Wno_cast_function_type -- Performing Test HAS_FLAG__Wno_cast_function_type - Success -- Warning flag is supported by compiler: -Wno-cast-function-type -- Runtime checking level: CHECK=2 -- Message stack: BOUT_USE_MSGSTACK=ON -- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF -- Signal handling: BOUT_USE_SIGNAL=ON -- Output coloring: BOUT_USE_COLOR=ON -- Field name tracking: BOUT_USE_TRACK=ON -- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF -- Enable backtrace: BOUT_USE_BACKTRACE=ON -- Performing Test HAS_PRETTY_FUNCTION -- Performing Test HAS_PRETTY_FUNCTION - Success -- Setting build type to 'RelWithDebInfo' as none was specified. CMake Deprecation Warning at externalpackages/googletest/CMakeLists.txt:4 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done CMake Deprecation Warning at externalpackages/googletest/googlemock/CMakeLists.txt:45 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at externalpackages/googletest/googletest/CMakeLists.txt:56 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found Python: /usr/bin/python3.12 (found version "3.12.1") found components: Interpreter -- Not building test test-laplace-hypre3d, requirement not met: BOUT_HAS_HYPRE -- Not building test test-laplacexy2-hypre, requirement not met: BOUT_HAS_HYPRE -- Not building test test-slepc-solver, requirement not met: BOUT_HAS_SLEPC -- Not building test MMS-advection-arakawa, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-central, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-upwind, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-weno3, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-diffusion2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-hw, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-laplace, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-advection, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-d2dx2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-d2dz2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-diffusion, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-time, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-time-petsc, requirement not met: BOUT_RUN_ALL_TESTS -- Not building example test_laplacexy_hypre, requirement not met: BOUT_HAS_HYPRE -- Found Doxygen: /usr/bin/doxygen (found version "1.10.0") found components: doxygen dot -- Found Sphinx: /usr/bin/sphinx-build -------------------------------- BOUT++ Configuration Summary -------------------------------- Bundled PVODE support : ON PETSc support : ON SLEPc support : OFF SUNDIALS support : ON HYPRE support : OFF NetCDF support : ON FFTW support : ON LAPACK support : TRUE OpenMP support : OFF Natural language support : ON ScoreP support : OFF System UUID generator : FALSE Extra debug output : OFF Runtime error check level: 2 Signal handling : ON Output coloring : ON Field name tracking : ON Floating point exceptions: OFF Backtrace enabled : ON RAJA enabled : OFF Umpire enabled : OFF Caliper enabled : OFF CUDA enabled : OFF Metric type : 2D Python API support : ON Sanitizers enabled : None === Python === Make sure that the tools/pylib directory is in your PYTHONPATH e.g. by adding to your ~/.bashrc file export PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib:/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib:$PYTHONPATH *** Now run `cmake --build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi` to compile BOUT++ *** -- Configuring done (4.3s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi + /usr/bin/cmake --build build_openmpi -j4 --verbose Change Dir: '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend /usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend /usr/bin/gmake -f CMakeFiles/mofiles.dir/build.make CMakeFiles/mofiles.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/mofiles.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/gmake -f CMakeFiles/mofiles.dir/build.make CMakeFiles/mofiles.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build /usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 0%] Generating locale/de/libbout.gmo, _mo_file_de [ 0%] Generating locale/es/libbout.gmo, _mo_file_es cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/de/ cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/es/ [ 0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -MF CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o.d -o CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/precon/pvbbdpre.cpp [ 0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -MF CMakeFiles/pvode.dir/source/cvode.cpp.o.d -o CMakeFiles/pvode.dir/source/cvode.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/de/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/de/libbout.po cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/es/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/es/libbout.po [ 2%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -MF CMakeFiles/pvpre.dir/precon/band.cpp.o.d -o CMakeFiles/pvpre.dir/precon/band.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/precon/band.cpp [ 5%] Generating locale/fr/libbout.gmo, _mo_file_fr cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/fr/ cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/fr/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/fr/libbout.po [ 5%] Generating locale/zh_CN/libbout.gmo, _mo_file_zh_CN cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/zh_CN/ cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/zh_CN/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/zh_CN/libbout.po [ 5%] Generating locale/zh_TW/libbout.gmo, _mo_file_zh_TW cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/zh_TW/ cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/zh_TW/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/zh_TW/libbout.po gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 5%] Built target mofiles [ 5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -MF CMakeFiles/pvode.dir/source/nvector.cpp.o.d -o CMakeFiles/pvode.dir/source/nvector.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp [ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -MF CMakeFiles/pvode.dir/source/llnlmath.cpp.o.d -o CMakeFiles/pvode.dir/source/llnlmath.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/llnlmath.cpp /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:429: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 429 | #pragma omp parallel for reduction(+: sum) /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:485: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 485 | #pragma omp parallel for reduction(+: sum) /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:543: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 543 | #pragma omp parallel for reduction(+: sum) /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:565: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 565 | #pragma omp parallel for reduction(+: sum) /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:583: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 583 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:698: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 698 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:714: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 714 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:730: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 730 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:745: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 745 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:761: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 761 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:777: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 777 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:793: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 793 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:809: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 809 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:824: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 824 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:831: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 831 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:837: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 837 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 850 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp: In function ‘void pvode::N_VLinearSum(real, N_Vector, real, N_Vector, N_Vector)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:189:12: warning: unused variable ‘v’ [-Wunused-variable] 189 | N_Vector v, v1, v2; | ^ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp: In function ‘pvode::real pvode::N_VWL2Norm(N_Vector, N_Vector)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:533:14: warning: variable ‘N_global’ set but not used [-Wunused-but-set-variable] 533 | integer N, N_global; | ^~~~~~~~ [ 8%] Linking CXX shared library ../../lib/libpvpre.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvpre.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvpre.so.1.0.0 -o ../../lib/libpvpre.so.1.0.0 CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o CMakeFiles/pvpre.dir/precon/band.cpp.o -Wl,-rpath,:::::::::::::::::::::::: [ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -MF CMakeFiles/pvode.dir/source/cvspgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvspgmr.cpp In function ‘pvode::CVnlsFunctional(pvode::CVodeMemRec*)’, inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1826:45, inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1358:18, inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:882:19: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1876:49: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized] 1876 | if ((m==maxcor) || ((m >= 2) && (del > RDIV * delp))) | ^ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1843:13: note: ‘delp’ was declared here 1843 | real del, delp, dcon; | ^~~~ In function ‘pvode::CVNewtonIteration(pvode::CVodeMemRec*)’, inlined from ‘pvode::CVnlsNewton(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1944:28, inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1827:41, inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1358:18, inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:882:19: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:2021:50: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized] 2021 | if ((m == maxcor) || ((m >= 2) && (del > RDIV*delp))) { | ^ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1971:13: note: ‘delp’ was declared here 1971 | real del, delp, dcon; | ^~~~ [ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -MF CMakeFiles/pvode.dir/source/spgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/spgmr.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp: In function ‘int pvode::SpgmrSolve(SpgmrMem, void*, N_Vector, N_Vector, int, int, real, int, void*, N_Vector, N_Vector, ATimesFn, PSolveFn, real*, int*, int*)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:159:8: warning: unused variable ‘s_r0_norm’ [-Wunused-variable] 159 | real s_r0_norm, beta, rotation_product, r_norm, s_product, rho; | ^~~~~~~~~ [ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -MF CMakeFiles/pvode.dir/source/iterativ.cpp.o.d -o CMakeFiles/pvode.dir/source/iterativ.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/iterativ.cpp cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:328:17: warning: ‘krydim’ may be used uninitialized [-Wmaybe-uninitialized] 328 | for (i=1; i <= krydim; i++) yg[i]=ZERO; | ~~^~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:161:36: note: ‘krydim’ was declared here 161 | int i, j, k, l, l_plus_1, l_max, krydim, ier, ntries; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:386:3: warning: ‘rho’ may be used uninitialized [-Wmaybe-uninitialized] 386 | if (rho < beta) { | ^~ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:159:62: note: ‘rho’ was declared here 159 | real s_r0_norm, beta, rotation_product, r_norm, s_product, rho; | ^~~ gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 8%] Built target pvpre [ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -MF CMakeFiles/pvode.dir/source/cvdiag.cpp.o.d -o CMakeFiles/pvode.dir/source/cvdiag.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvdiag.cpp [ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -MF CMakeFiles/pvode.dir/source/smalldense.cpp.o.d -o CMakeFiles/pvode.dir/source/smalldense.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp: In function ‘pvode::integer pvode::gefa(real**, integer, integer*)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp:82:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 82 | if (swap = (l != k)) { | ~~~~~^~~~~~~~~~ [ 11%] Linking CXX shared library ../../lib/libpvode.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvode.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvode.so.1.0.0 -o ../../lib/libpvode.so.1.0.0 CMakeFiles/pvode.dir/source/cvode.cpp.o CMakeFiles/pvode.dir/source/nvector.cpp.o CMakeFiles/pvode.dir/source/llnlmath.cpp.o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o CMakeFiles/pvode.dir/source/spgmr.cpp.o CMakeFiles/pvode.dir/source/iterativ.cpp.o CMakeFiles/pvode.dir/source/cvdiag.cpp.o CMakeFiles/pvode.dir/source/smalldense.cpp.o -Wl,-rpath,:::::::::::::::::::::::: cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 11%] Built target pvode /usr/bin/gmake -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 14%] Generating bout++-time.cxx /usr/bin/cmake -P /builddir/build/BUILD/BOUT++-v5.1.0/cmake/GenerateDateTimeFile.cmake cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC 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-I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field3d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field3d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/field/field3d.cxx /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field2d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field2d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field2d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/field/field2d.cxx [ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field_data.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field_data.cxx.o -MF CMakeFiles/bout++.dir/src/field/field_data.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field_data.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/field/field_data.cxx [ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field_factory.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field_factory.cxx.o -MF CMakeFiles/bout++.dir/src/field/field_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field_factory.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/field/field_factory.cxx [ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplace/impls/spt/spt.cxx In file included from /usr/include/c++/14/bits/specfun.h:43, from /usr/include/c++/14/cmath:3898, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field.hxx:34, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:34, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invert_laplace.hxx:43, from /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplace/impls/petsc3damg/petsc3damg.hxx:34, from /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplace/impls/petsc3damg/petsc3damg.cxx:31: In function ‘std::__copy_move::__copy_m(double const*, double const*, double*)double*’, inlined from ‘std::__copy_move_a2(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:507:30, inlined from ‘std::__copy_move_a1(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:534:42, inlined from ‘std::__copy_move_a(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:541:31, inlined from ‘std::copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:637:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from ‘std::__uninitialized_copy_a(double const*, double const*, double*, 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexy2/laplacexy2_hypre.cxx In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexy2/laplacexy2_hypre.cxx:1: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invert/laplacexy2_hypre.hxx:41:2: warning: #warning LaplaceXY requires Hypre. No LaplaceXY available [-Wcpp] 41 | #warning LaplaceXY requires Hypre. No LaplaceXY available | ^~~~~~~ [ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx In file included from /usr/include/c++/14/string:51, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boutexception.hxx:10, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/assert.hxx:20, from /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexy2/laplacexy2.cxx:5: In function ‘std::__copy_move::__copy_m(double const*, double const*, double*)double*’, inlined from ‘std::__copy_move_a2(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:507:30, inlined from ‘std::__copy_move_a1(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:534:42, inlined from ‘std::__copy_move_a(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:541:31, inlined from ‘std::copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:637:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from ‘std::__uninitialized_copy_a(double const*, double const*, double*, std::allocator&)double*’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector >::_M_assign_aux(double const*, double const*, std::forward_iterator_tag)void’ at /usr/include/c++/14/bits/vector.tcc:352:35, inlined from ‘std::vector >::operator=(std::initializer_list)’ at /usr/include/c++/14/bits/stl_vector.h:787:21, inlined from ‘PetscMatrix::Element::Element(_p_Mat**, int, int, std::vector >, std::vector >)’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/petsc_interface.hxx:399:23: /usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘memcpy’ forming offset 8 is out of the bounds [0, 8] of object ‘’ with type ‘const double[1]’ [-Warray-bounds=] 438 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invert/laplacexy2.hxx:71, from /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexy2/laplacexy2.cxx:8: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/petsc_interface.hxx: In member function ‘PetscMatrix::Element::Element(_p_Mat**, int, int, std::vector >, std::vector >)’: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/petsc_interface.hxx:399:23: note: ‘’ declared here 399 | weights = {1.0}; | ^ [ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx [ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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-I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o -c 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-I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o -MF CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/parderiv/invert_parderiv.cxx [ 42%] Building CXX object 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o -MF CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/pardiv/invert_pardiv.cxx [ 42%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_factory.cxx [ 42%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_region.cxx [ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx [ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/coordinates.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In function ‘void verifyNumPoints(BoundaryRegion*, int)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:80:21: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 80 | if (mesh->firstY()) { | ~~~~~~~~~~~~^~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field_factory.hxx:32, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_standard.hxx:9, from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:1: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:83:20: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 83 | if (mesh->lastY()) { | ~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:473:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 473 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 | t); | ~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field_data.hxx:51, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field.hxx:39, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:34, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_op.hxx:9, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_standard.hxx:6: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:517:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 517 | val = fg->generate(xnorm, TWOPI * ynorm, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 518 | TWOPI * (zk - 0.5) / (mesh->LocalNz), t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O3::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:978:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 978 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 979 | t); | ~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ [ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/coordinates_accessor.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O4::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:1444:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 1444 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1445 | t); | ~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryNeumann::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:2152:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 2152 | val = fg->generate(xnorm, TWOPI * ynorm, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2153 | TWOPI * (zk - 0.5) / (mesh->LocalNz), t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ [ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/data/gridfromfile.cxx [ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/data/gridfromoptions.cxx [ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/difops.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/difops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/difops.cxx [ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx [ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx: In function ‘FV::communicateFluxes(Field3D&)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx:471:15: warning: ‘xout’ may be used uninitialized [-Wmaybe-uninitialized] 471 | mesh->wait(xout); | ~~~~~~~~~~^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx:442:20: note: ‘xout’ was declared here 442 | comm_handle xin, xout; | ^~~~ [ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/index_derivs.cxx [ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation_xz.cxx In file included from /usr/include/c++/14/bits/shared_ptr.h:53, from /usr/include/c++/14/memory:80, from /usr/include/fmt/core.h:16, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/msg_stack.hxx:37, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/scorepwrapper.hxx:6, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/deriv_store.hxx:37, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:48, from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.hxx:8, from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:36: In member function ‘std::__shared_ptr, (__gnu_cxx::_Lock_policy)2>::operator bool() const’, inlined from ‘std::operator== >(std::shared_ptr > const&, decltype(nullptr))bool’ at /usr/include/c++/14/bits/shared_ptr.h:561:14, inlined from ‘Array >::empty() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/array.hxx:270:44, inlined from ‘Field3D::isAllocated() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field3d.hxx:203:48, inlined from ‘BoutMesh::pack_data(std::vector > const&, int, int, int, int, double*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:2256:7: /usr/include/c++/14/bits/shared_ptr_base.h:1671:16: warning: potential null pointer dereference [-Wnull-dereference] 1671 | { return _M_ptr != nullptr; } | ^~~~~~ In member function ‘std::__shared_ptr, (__gnu_cxx::_Lock_policy)2>::operator bool() const’, inlined from ‘std::operator== >(std::shared_ptr > const&, decltype(nullptr))bool’ at /usr/include/c++/14/bits/shared_ptr.h:561:14, inlined from ‘Array >::empty() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/array.hxx:270:44, inlined from ‘Field2D::isAllocated() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:106:48, inlined from ‘BoutMesh::pack_data(std::vector > const&, int, int, int, int, double*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:2267:7: /usr/include/c++/14/bits/shared_ptr_base.h:1671:16: warning: potential null pointer dereference [-Wnull-dereference] 1671 | { return _M_ptr != nullptr; } | ^~~~~~ [ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/bilinear_xz.cxx [ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/hermite_spline_xz.cxx [ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/hermite_spline_z.cxx [ 54%] Building CXX object 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/builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx: In member function ‘virtual int CvodeSolver::init()’: /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:387:33: warning: ‘int CVSpilsSetLinearSolver(void*, SUNLinearSolver)’ is deprecated: use CVodeSetLinearSolver instead [-Wdeprecated-declarations] 387 | if (CVSpilsSetLinearSolver(cvode_mem, sun_solver) != CV_SUCCESS) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:49: /usr/include/openmpi-x86_64/cvode/cvode_spils.h:43:5: note: declared here 43 | int CVSpilsSetLinearSolver(void *cvode_mem, SUNLinearSolver LS); | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:425:37: warning: ‘int CVSpilsSetPreconditioner(void*, CVSpilsPrecSetupFn, CVSpilsPrecSolveFn)’ is deprecated: use CVodeSetPreconditioner instead [-Wdeprecated-declarations] 425 | if (CVSpilsSetPreconditioner(cvode_mem, nullptr, cvode_pre_shim)) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/openmpi-x86_64/cvode/cvode_spils.h:49:5: note: declared here 49 | int CVSpilsSetPreconditioner(void *cvode_mem, CVSpilsPrecSetupFn pset, | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:437:33: warning: ‘int CVSpilsSetLinearSolver(void*, SUNLinearSolver)’ is deprecated: use CVodeSetLinearSolver instead [-Wdeprecated-declarations] 437 | if (CVSpilsSetLinearSolver(cvode_mem, sun_solver) != CV_SUCCESS) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/openmpi-x86_64/cvode/cvode_spils.h:43:5: note: declared here 43 | int CVSpilsSetLinearSolver(void *cvode_mem, SUNLinearSolver LS); | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:451:29: warning: ‘int CVSpilsSetJacTimes(void*, CVSpilsJacTimesSetupFn, CVSpilsJacTimesVecFn)’ is deprecated: use CVodeSetJacTimes instead [-Wdeprecated-declarations] 451 | if (CVSpilsSetJacTimes(cvode_mem, nullptr, cvode_jac) != CV_SUCCESS) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/openmpi-x86_64/cvode/cvode_spils.h:53:5: note: declared here 53 | int CVSpilsSetJacTimes(void *cvode_mem, CVSpilsJacTimesSetupFn jtsetup, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx: In member function ‘virtual int CvodeSolver::run()’: /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:546:28: warning: ‘int CVSpilsGetNumPrecSolves(void*, long int*)’ is deprecated: use CVodeGetNumPrecSolves instead [-Wdeprecated-declarations] 546 | CVSpilsGetNumPrecSolves(cvode_mem, &temp_long_int); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/openmpi-x86_64/cvode/cvode_spils.h:64:5: note: declared here 64 | int CVSpilsGetNumPrecSolves(void *cvode_mem, long int *npsolves); | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:548:26: warning: ‘int CVSpilsGetNumLinIters(void*, long int*)’ is deprecated: use CVodeGetNumLinIters instead [-Wdeprecated-declarations] 548 | CVSpilsGetNumLinIters(cvode_mem, &temp_long_int); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/openmpi-x86_64/cvode/cvode_spils.h:67:5: note: declared here 67 | int CVSpilsGetNumLinIters(void *cvode_mem, long int *nliters); | ^~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/euler/euler.cxx [ 68%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx [ 68%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/imex-bdf2/imex-bdf2.cxx [ 68%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/petsc/petsc.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx: In member function ‘virtual int IdaSolver::init()’: /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx:199:30: warning: ‘int IDASpilsSetLinearSolver(void*, SUNLinearSolver)’ is deprecated: use IDASetLinearSolver instead [-Wdeprecated-declarations] 199 | if (IDASpilsSetLinearSolver(idamem, sun_solver) != IDA_SUCCESS) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx:45: /usr/include/openmpi-x86_64/ida/ida_spils.h:44:5: note: declared here 44 | int IDASpilsSetLinearSolver(void *ida_mem, SUNLinearSolver LS); | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx:234:36: warning: ‘int IDASpilsSetPreconditioner(void*, IDASpilsPrecSetupFn, IDASpilsPrecSolveFn)’ is deprecated: use IDASetPreconditioner instead [-Wdeprecated-declarations] 234 | if (IDASpilsSetPreconditioner(idamem, nullptr, ida_pre_shim)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/openmpi-x86_64/ida/ida_spils.h:47:5: note: declared here 47 | int IDASpilsSetPreconditioner(void *ida_mem, IDASpilsPrecSetupFn pset, | ^~~~~~~~~~~~~~~~~~~~~~~~~ [ 68%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/power/power.cxx [ 71%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects 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CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx [ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -MF CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/generator_context.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx: In member function ‘virtual double FieldGenerator::generate(const bout::generator::Context&)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx:43:18: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 43 | return generate(ctx.x(), ctx.y(), ctx.z(), ctx.t()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx:25: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ [ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer 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/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/boutcpp.pxd cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/resolve_enum.pxd cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py boutpp.pyx.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/boutpp.pyx cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py helper.cxx.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/helper.cxx [ 94%] Generating helper.h cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py helper.h.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/helper.h [ 94%] Cythonizing python interface cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/python3.12 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True warning: resolve_enum.pxd:49:21: 'deflt' redeclared warning: resolve_enum.pxd:189:24: 'Standard' redeclared warning: resolve_enum.pxd:223:15: 'Standard' redeclared warning: bout_options.pxd:22:21: Rvalue-reference as function argument not supported warning: bout_options.pxd:24:32: Rvalue-reference as function argument not supported performance hint: libboutpp.pyx:2065:5: Exception check on 'callback' will always require the GIL to be acquired. Possible solutions: 1. Declare 'callback' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'callback' to allow an error code to be returned. cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/helper.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/helper.cxx.o -MF CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/helper.cxx.o.d -o CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/helper.cxx [ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/libboutpp.cpp.o [ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/boutexception_helper.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/libboutpp.cpp.o -MF CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/libboutpp.cpp.o.d -o CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -MF CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/boutexception_helper.cxx.o.d -o CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/boutexception_helper.cxx In file included from /usr/include/numpy/ndarraytypes.h:1929, from /usr/include/numpy/ndarrayobject.h:12, from /usr/include/numpy/arrayobject.h:5, from /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:1233: /usr/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:40867:46: warning: ‘__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function] 40867 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘__pyx_f_12resolve_enum_resolve_cell_loc(_object*)’: /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:9307:10: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized] 9307 | return __pyx_r; | ^~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:8950:12: note: ‘__pyx_r’ was declared here 8950 | CELL_LOC __pyx_r; | ^~~~~~~ In function ‘__pyx_pf_9libboutpp_54bracket(_object*, __pyx_obj_9libboutpp_Field3D*, __pyx_obj_9libboutpp_Field3D*, _object*, _object*)’, inlined from ‘__pyx_pw_9libboutpp_55bracket(_object*, _object* const*, long, _object*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:64889:42: /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:64983:65: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized] 64983 | __pyx_t_1 = ((PyObject *)__pyx_f_9libboutpp_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2989, __pyx_L1_error) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘__pyx_pw_9libboutpp_55bracket(_object*, _object* const*, long, _object*)’: /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:10818:18: note: ‘__pyx_r’ was declared here 10818 | BRACKET_METHOD __pyx_r; | ^~~~~~~ [ 97%] Linking CXX shared library libboutpp.cpython-312-x86_64-linux-gnu.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E cmake_link_script CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libboutpp.cpython-312-x86_64-linux-gnu.so -o libboutpp.cpython-312-x86_64-linux-gnu.so "CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/libboutpp.cpp.o" "CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/helper.cxx.o" "CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/boutexception_helper.cxx.o" -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib: ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 97%] Built target boutpp.cpython-312-x86_64-linux-gnu /usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [100%] Building python interface cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-312-x86_64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-312-x86_64-linux-gnu.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [100%] Built target boutpp gmake[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 0 + PYPA= + LDPA=/usr/lib64/openmpi/lib ++ pwd + export PYTHONPATH=:/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/ + PYTHONPATH=:/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/ ++ pwd + export LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib/ + LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib/ + /usr/bin/cmake --build build_openmpi/manual -j4 --verbose Change Dir: '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0 cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual//CMakeFiles/progress.marks cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/gmake -f CMakeFiles/Makefile2 manual/all gmake[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/gmake -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual/CMakeFiles/sphinx-html.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/gmake -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Generating HTML documentation with Sphinx in /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual/docs cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual && /usr/bin/sphinx-build -b html /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual/docs Running Sphinx v7.2.6 breathe module not installed recommonmark module not installed making output directory... done building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 46 source files that are out of date updating environment: [new config] 46 added, 0 changed, 0 removed No mlab available reading sources... [100%] user_docs/variable_init /usr/lib/python3.12/site-packages/boutdata/collect.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :no-index: for one of them WARNING: autodoc: failed to import module 'mayavi2' from module 'boutdata'; the following exception was raised: No module named 'enthought' /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:5: ERROR: Unexpected indentation. /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:6: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:56: WARNING: Footnote [1] is not referenced. docstring of libboutpp.PhysicsModel:14: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/boutpp/__init__.py:docstring of libboutpp.create3D:3: ERROR: Unexpected indentation. WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised: No module named 'crosslines' WARNING: autodoc: failed to import module 'anim' from module 'boututils'; the following exception was raised: No module named 'tvtk' WARNING: autodoc: failed to import module 'boutgrid' from module 'boututils'; the following exception was raised: No module named 'tvtk' /usr/lib/python3.12/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation. WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'efit_analyzer' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'volume_integral' from module 'boututils'; the following exception was raised: No module named 'past' /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.DommaschkPotentials:3: ERROR: Unexpected indentation. /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :no-index: for one of them /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.boundary:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :no-index: for one of them /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse:3: ERROR: Unexpected indentation. /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse.coil:3: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/file_io.rst:114: ERROR: Unknown interpreted text role "py". looking for now-outdated files... /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/performance_profiling.rst:85: WARNING: Inline literal start-string without end-string. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/boundary_options.rst:120: WARNING: Footnote [#] is not referenced. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:447: WARNING: Title underline too short. Working with an active ``conda`` environment ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:453: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:454: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/lib/python3.12/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :no-index: for one of them /usr/lib/python3.12/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :no-index: for one of them /usr/lib/python3.12/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :no-index: for one of them /usr/lib/python3.12/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :no-index: for one of them /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/running_bout.rst:462: WARNING: Literal block expected; none found. none found pickling environment... done checking consistency... done preparing documents... WARNING: unsupported theme option 'repository_url' given WARNING: unsupported theme option 'repository_branch' given WARNING: unsupported theme option 'path_to_docs' given WARNING: unsupported theme option 'use_edit_page_button' given WARNING: unsupported theme option 'use_repository_button' given WARNING: unsupported theme option 'use_issues_button' given WARNING: unsupported theme option 'home_page_in_toc' given done copying assets... copying static files... done copying extra files... done done writing output... [100%] user_docs/variable_init /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator.normal' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] numpy.random.Generator.normal -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] numpy.random.Generator.normal -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator.normal -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator.normal -----^ /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] numpy.random.Generator -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] numpy.random.Generator -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator -----^ /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: undefined label: 'random-quick-start' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:148: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:154: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:156: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:160: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:166: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:168: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:181: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:183: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:187: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:191: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:200: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:212: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:220: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:224: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:229: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:231: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx' generating indices... /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:247: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:251: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:255: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:259: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:263: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:266: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:270: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:278: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:280: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:300: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:302: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:304: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:312: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:318: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:320: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:322: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/laplacian.rst:185: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/output_and_post.rst:580: WARNING: Lexing literal_block 'AppendTo[$Path,"/full/path/to/BOUT/tools/mathematicalib"]' as "mathematica" resulted in an error at token: '$'. Retrying in relaxed mode. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/time_integration.rst:1030: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' genindex py-modindex done writing additional pages... search done copying images... [100%] figs/init_balloon.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 115 warnings. The HTML pages are in docs. cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual && /usr/bin/cmake -E echo Generated\ HTML\ docs\ in\ file:///builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual/docs/index.html Generated HTML docs in file:///builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual/docs/index.html gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target sphinx-html /usr/bin/gmake -f manual/CMakeFiles/docs.dir/build.make manual/CMakeFiles/docs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual/CMakeFiles/docs.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/gmake -f manual/CMakeFiles/docs.dir/build.make manual/CMakeFiles/docs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' gmake[2]: Nothing to be done for 'manual/CMakeFiles/docs.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target docs gmake[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 0 + export LD_LIBRARY_PATH=/usr/lib64/openmpi/lib + LD_LIBRARY_PATH=/usr/lib64/openmpi/lib + export PYTHONPATH= + PYTHONPATH= + '[' openmpi = mpich ']' + '[' openmpi = openmpi ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/openmpi/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval 'unset MPI_COMPILER; unset LD_LIBRARY_PATH; unset MPI_MAN; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset _LMFILES_; unset LOADEDMODULES; unset CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in openmpi mpich + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ LOADEDMODULES= ++++ export LOADEDMODULES ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_; LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; test 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=mpicc + export CC + CXX=mpicxx + export CXX + /usr/bin/cmake -S . -B build_mpich -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBOUT_USE_FFTW=ON -DBOUT_USE_NETCDF=ON -DBOUT_USE_SCOREP=OFF -DBOUT_USE_SYSTEM_MPARK_VARIANT=ON -DBOUT_USE_LAPACK=ON -DBOUT_USE_NLS=ON -DBOUT_USE_SYSTEM_FMT=ON -DBOUT_USE_UUID_SYSTEM_GENERATOR=ON -DCMAKE_INSTALL_PREFIX=/ -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_INCLUDEDIR=/usr/include/mpich-x86_64/bout++/ -DCMAKE_INSTALL_DATAROOTDIR=/usr/share -DCMAKE_INSTALL_PYTHON_SITEARCH=/usr/lib64/python3.12/site-packages/mpich -DBOUT_TEST_TIMEOUT=900 -DBOUT_BUILD_DOCS=ON -DBOUT_USE_PETSC=ON -DBOUT_USE_SUNDIALS=ON -- Configuring BOUT++ version 5.2.0 -- The CXX compiler identification is GNU 14.0.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/lib64/mpich/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python3: /usr/bin/python3.12 (found version "3.12.1") found components: Interpreter -- Could NOT find ClangFormat (missing: ClangFormat_BIN) CMake Warning (dev) at CMakeLists.txt:391 (message): 'src/field/generated_fieldops.cxx' will not be regenerated when you make changes to either 'src/field/gen_fieldops.py' or 'src/field/gen_fieldops.jinja'. This is because either Python3 or clang-format is missing (see above messages for more information) or BOUT_GENERATE_FIELDOPS is OFF (current value: OFF). This warning is only important for BOUT++ developers and can otherwise be safely ignored. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Python: /usr/bin/python3.12 (found suitable version "3.12.1", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed -- Found Numpy: /usr/include (found version "1.26.2") -- Found Cython: TRUE (found version "3.0.8") -- Found Bash: /usr/bin/bash (found version "5.2.26") -- Building BOUT++ Python interface -- Found MPI_CXX: /usr/lib64/mpich/bin/mpicxx (found version "4.0") -- Found MPI: TRUE (found version "4.0") -- Enable OpenMP: OFF -- HYPRE support: OFF -- Found PkgConfig: /usr/bin/pkg-config (found version "1.9.5") -- Checking for one of the modules 'PETSc>3.4.0;petsc>3.4.0' -- Found PETSc: /usr/include/mpich-x86_64/petsc -- PETSc support: ON -- Using external mpark.variant -- Using external fmt -- PVODE support: ON -- Found netCDF: /usr/lib64/libnetcdf.so (found version "4.9.2") -- Found netCDFCxx version 4.3.1 -- Found netCDFCxx: /usr/lib64/libnetcdf_c++4.so (found version "4.3.1") -- NetCDF support: ON -- Found FFTW: /usr/lib64/libfftw3.so -- FFTW support: ON -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib64/libflexiblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/lib64/libflexiblas.so;-lm;-ldl -- LAPACK support: TRUE -- SLEPc support: OFF -- SUNDIALS support: ON -- Found Gettext: /usr/bin/msgmerge (found version "0.22") -- Found Intl: built in to C library -- libuuid not found, using fallback UUID generator -- UUID_SYSTEM_GENERATOR: FALSE -- Enable coverage: OFF -- Git revision: Unknown -- Performing Test HAS_FLAG__Wnull_dereference -- Performing Test HAS_FLAG__Wnull_dereference - Success -- Warning flag is supported by compiler: -Wnull-dereference -- Found negative flag: -Wno-cast-function-type replaced with -Wcast-function-type -- Performing Test HAS_FLAG__Wno_cast_function_type -- Performing Test HAS_FLAG__Wno_cast_function_type - Success -- Warning flag is supported by compiler: -Wno-cast-function-type -- Runtime checking level: CHECK=2 -- Message stack: BOUT_USE_MSGSTACK=ON -- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF -- Signal handling: BOUT_USE_SIGNAL=ON -- Output coloring: BOUT_USE_COLOR=ON -- Field name tracking: BOUT_USE_TRACK=ON -- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF -- Enable backtrace: BOUT_USE_BACKTRACE=ON -- Performing Test HAS_PRETTY_FUNCTION -- Performing Test HAS_PRETTY_FUNCTION - Success -- Setting build type to 'RelWithDebInfo' as none was specified. CMake Deprecation Warning at externalpackages/googletest/CMakeLists.txt:4 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/lib64/mpich/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done CMake Deprecation Warning at externalpackages/googletest/googlemock/CMakeLists.txt:45 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at externalpackages/googletest/googletest/CMakeLists.txt:56 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found Python: /usr/bin/python3.12 (found version "3.12.1") found components: Interpreter -- Not building test test-laplace-hypre3d, requirement not met: BOUT_HAS_HYPRE -- Not building test test-laplacexy2-hypre, requirement not met: BOUT_HAS_HYPRE -- Not building test test-slepc-solver, requirement not met: BOUT_HAS_SLEPC -- Not building test MMS-advection-arakawa, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-central, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-upwind, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-weno3, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-diffusion2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-hw, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-laplace, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-advection, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-d2dx2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-d2dz2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-diffusion, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-time, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-time-petsc, requirement not met: BOUT_RUN_ALL_TESTS -- Not building example test_laplacexy_hypre, requirement not met: BOUT_HAS_HYPRE -- Found Doxygen: /usr/bin/doxygen (found version "1.10.0") found components: doxygen dot -- Found Sphinx: /usr/bin/sphinx-build -------------------------------- BOUT++ Configuration Summary -------------------------------- Bundled PVODE support : ON PETSc support : ON SLEPc support : OFF SUNDIALS support : ON HYPRE support : OFF NetCDF support : ON FFTW support : ON LAPACK support : TRUE OpenMP support : OFF Natural language support : ON ScoreP support : OFF System UUID generator : FALSE Extra debug output : OFF Runtime error check level: 2 Signal handling : ON Output coloring : ON Field name tracking : ON Floating point exceptions: OFF Backtrace enabled : ON RAJA enabled : OFF Umpire enabled : OFF Caliper enabled : OFF CUDA enabled : OFF Metric type : 2D Python API support : ON Sanitizers enabled : None === Python === Make sure that the tools/pylib directory is in your PYTHONPATH e.g. by adding to your ~/.bashrc file export PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib:/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib:$PYTHONPATH *** Now run `cmake --build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich` to compile BOUT++ *** -- Configuring done (5.6s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich + /usr/bin/cmake --build build_mpich -j4 --verbose Change Dir: '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend /usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend /usr/bin/gmake -f CMakeFiles/mofiles.dir/build.make CMakeFiles/mofiles.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/mofiles.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/gmake -f CMakeFiles/mofiles.dir/build.make CMakeFiles/mofiles.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build /usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 0%] Generating locale/es/libbout.gmo, _mo_file_es [ 0%] Generating locale/de/libbout.gmo, _mo_file_de cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/de/ cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/es/ [ 0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o [ 0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -MF CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o.d -o CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/precon/pvbbdpre.cpp cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -MF CMakeFiles/pvode.dir/source/cvode.cpp.o.d -o CMakeFiles/pvode.dir/source/cvode.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/de/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/de/libbout.po cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/es/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/es/libbout.po [ 2%] Generating locale/fr/libbout.gmo, _mo_file_fr [ 2%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/fr/ cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -MF CMakeFiles/pvode.dir/source/nvector.cpp.o.d -o CMakeFiles/pvode.dir/source/nvector.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/fr/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/fr/libbout.po [ 2%] Generating locale/zh_CN/libbout.gmo, _mo_file_zh_CN cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/zh_CN/ cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/zh_CN/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/zh_CN/libbout.po [ 2%] Generating locale/zh_TW/libbout.gmo, _mo_file_zh_TW cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/zh_TW/ cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/zh_TW/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/zh_TW/libbout.po /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:429: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 429 | #pragma omp parallel for reduction(+: sum) /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:485: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 485 | #pragma omp parallel for reduction(+: sum) /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:543: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 543 | #pragma omp parallel for reduction(+: sum) /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:565: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 565 | #pragma omp parallel for reduction(+: sum) /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:583: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 583 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:698: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 698 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:714: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 714 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:730: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 730 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:745: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 745 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:761: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 761 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:777: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 777 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:793: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 793 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:809: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 809 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:824: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 824 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:831: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 831 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:837: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 837 | #pragma omp parallel for /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 850 | #pragma omp parallel for gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 2%] Built target mofiles [ 5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -MF CMakeFiles/pvpre.dir/precon/band.cpp.o.d -o CMakeFiles/pvpre.dir/precon/band.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/precon/band.cpp /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp: In function ‘void pvode::N_VLinearSum(real, N_Vector, real, N_Vector, N_Vector)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:189:12: warning: unused variable ‘v’ [-Wunused-variable] 189 | N_Vector v, v1, v2; | ^ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp: In function ‘pvode::real pvode::N_VWL2Norm(N_Vector, N_Vector)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:533:14: warning: variable ‘N_global’ set but not used [-Wunused-but-set-variable] 533 | integer N, N_global; | ^~~~~~~~ [ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -MF CMakeFiles/pvode.dir/source/llnlmath.cpp.o.d -o CMakeFiles/pvode.dir/source/llnlmath.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/llnlmath.cpp [ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -MF CMakeFiles/pvode.dir/source/cvspgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvspgmr.cpp [ 8%] Linking CXX shared library ../../lib/libpvpre.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvpre.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvpre.so.1.0.0 -o ../../lib/libpvpre.so.1.0.0 CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o CMakeFiles/pvpre.dir/precon/band.cpp.o -Wl,-rpath,:::::::::::::::::::::: In function ‘pvode::CVnlsFunctional(pvode::CVodeMemRec*)’, inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1826:45, inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1358:18, inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:882:19: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1876:49: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized] 1876 | if ((m==maxcor) || ((m >= 2) && (del > RDIV * delp))) | ^ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1843:13: note: ‘delp’ was declared here 1843 | real del, delp, dcon; | ^~~~ In function ‘pvode::CVNewtonIteration(pvode::CVodeMemRec*)’, inlined from ‘pvode::CVnlsNewton(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1944:28, inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1827:41, inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1358:18, inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:882:19: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:2021:50: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized] 2021 | if ((m == maxcor) || ((m >= 2) && (del > RDIV*delp))) { | ^ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1971:13: note: ‘delp’ was declared here 1971 | real del, delp, dcon; | ^~~~ [ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -MF CMakeFiles/pvode.dir/source/spgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/spgmr.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp: In function ‘int pvode::SpgmrSolve(SpgmrMem, void*, N_Vector, N_Vector, int, int, real, int, void*, N_Vector, N_Vector, ATimesFn, PSolveFn, real*, int*, int*)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:159:8: warning: unused variable ‘s_r0_norm’ [-Wunused-variable] 159 | real s_r0_norm, beta, rotation_product, r_norm, s_product, rho; | ^~~~~~~~~ [ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -MF CMakeFiles/pvode.dir/source/iterativ.cpp.o.d -o CMakeFiles/pvode.dir/source/iterativ.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/iterativ.cpp /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:328:17: warning: ‘krydim’ may be used uninitialized [-Wmaybe-uninitialized] 328 | for (i=1; i <= krydim; i++) yg[i]=ZERO; | ~~^~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:161:36: note: ‘krydim’ was declared here 161 | int i, j, k, l, l_plus_1, l_max, krydim, ier, ntries; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:386:3: warning: ‘rho’ may be used uninitialized [-Wmaybe-uninitialized] 386 | if (rho < beta) { | ^~ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:159:62: note: ‘rho’ was declared here 159 | real s_r0_norm, beta, rotation_product, r_norm, s_product, rho; | ^~~ [ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -MF CMakeFiles/pvode.dir/source/cvdiag.cpp.o.d -o CMakeFiles/pvode.dir/source/cvdiag.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvdiag.cpp cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so [ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -MF CMakeFiles/pvode.dir/source/smalldense.cpp.o.d -o CMakeFiles/pvode.dir/source/smalldense.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 11%] Built target pvpre /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp: In function ‘pvode::integer pvode::gefa(real**, integer, integer*)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp:82:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 82 | if (swap = (l != k)) { | ~~~~~^~~~~~~~~~ [ 11%] Linking CXX shared library ../../lib/libpvode.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvode.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvode.so.1.0.0 -o ../../lib/libpvode.so.1.0.0 CMakeFiles/pvode.dir/source/cvode.cpp.o CMakeFiles/pvode.dir/source/nvector.cpp.o CMakeFiles/pvode.dir/source/llnlmath.cpp.o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o CMakeFiles/pvode.dir/source/spgmr.cpp.o CMakeFiles/pvode.dir/source/iterativ.cpp.o CMakeFiles/pvode.dir/source/cvdiag.cpp.o CMakeFiles/pvode.dir/source/smalldense.cpp.o -Wl,-rpath,:::::::::::::::::::::: cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 11%] Built target pvode /usr/bin/gmake -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 14%] Generating bout++-time.cxx /usr/bin/cmake -P /builddir/build/BUILD/BOUT++-v5.1.0/cmake/GenerateDateTimeFile.cmake cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/bout++.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/gmake -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 14%] Building CXX object CMakeFiles/bout++.dir/src/field/field2d.cxx.o [ 14%] Building CXX object CMakeFiles/bout++.dir/src/bout++.cxx.o [ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field3d.cxx.o [ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_tri/serial_tri.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplace/impls/serial_tri/serial_tri.cxx [ 34%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplace/impls/spt/spt.cxx In file included from /usr/include/c++/14/bits/specfun.h:43, from /usr/include/c++/14/cmath:3898, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field.hxx:34, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:34, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invert_laplace.hxx:43, from /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplace/impls/petsc3damg/petsc3damg.hxx:34, from /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplace/impls/petsc3damg/petsc3damg.cxx:31: In function ‘std::__copy_move::__copy_m(double const*, double const*, double*)double*’, inlined from ‘std::__copy_move_a2(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:507:30, inlined from ‘std::__copy_move_a1(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:534:42, inlined from ‘std::__copy_move_a(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:541:31, inlined from ‘std::copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:637:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from ‘std::__uninitialized_copy_a(double const*, double const*, double*, std::allocator&)double*’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector >::_M_assign_aux(double const*, double const*, std::forward_iterator_tag)void’ at /usr/include/c++/14/bits/vector.tcc:352:35, inlined from ‘std::vector >::operator=(std::initializer_list)’ at /usr/include/c++/14/bits/stl_vector.h:787:21, inlined from ‘PetscMatrix::Element::Element(_p_Mat**, int, int, std::vector >, std::vector >)’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/petsc_interface.hxx:399:23: /usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘memcpy’ forming offset 8 is out of the bounds [0, 8] of object ‘’ with type ‘const double[1]’ [-Warray-bounds=] 438 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplace/impls/petsc3damg/petsc3damg.hxx:50: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/petsc_interface.hxx: In member function ‘PetscMatrix::Element::Element(_p_Mat**, int, int, std::vector >, std::vector >)’: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/petsc_interface.hxx:399:23: note: ‘’ declared here 399 | weights = {1.0}; | ^ [ 34%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx [ 37%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplace/invert_laplace.cxx [ 37%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexy/laplacexy.cxx [ 37%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexy2/laplacexy2.cxx [ 37%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexy2/laplacexy2_hypre.cxx In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexy2/laplacexy2_hypre.cxx:1: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invert/laplacexy2_hypre.hxx:41:2: warning: #warning LaplaceXY requires Hypre. No LaplaceXY available [-Wcpp] 41 | #warning LaplaceXY requires Hypre. No LaplaceXY available | ^~~~~~~ [ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx In file included from /usr/include/c++/14/string:51, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boutexception.hxx:10, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/assert.hxx:20, from /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexy2/laplacexy2.cxx:5: In function ‘std::__copy_move::__copy_m(double const*, double const*, double*)double*’, inlined from ‘std::__copy_move_a2(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:507:30, inlined from ‘std::__copy_move_a1(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:534:42, inlined from ‘std::__copy_move_a(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:541:31, inlined from ‘std::copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:637:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from ‘std::__uninitialized_copy_a(double const*, double const*, double*, std::allocator&)double*’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector >::_M_assign_aux(double const*, double const*, std::forward_iterator_tag)void’ at /usr/include/c++/14/bits/vector.tcc:352:35, inlined from ‘std::vector >::operator=(std::initializer_list)’ at /usr/include/c++/14/bits/stl_vector.h:787:21, inlined from ‘PetscMatrix::Element::Element(_p_Mat**, int, int, std::vector >, std::vector >)’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/petsc_interface.hxx:399:23: /usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘memcpy’ forming offset 8 is out of the bounds [0, 8] of object ‘’ with type ‘const double[1]’ [-Warray-bounds=] 438 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invert/laplacexy2.hxx:71, from /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexy2/laplacexy2.cxx:8: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/petsc_interface.hxx: In member function ‘PetscMatrix::Element::Element(_p_Mat**, int, int, std::vector >, std::vector >)’: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/petsc_interface.hxx:399:23: note: ‘’ declared here 399 | weights = {1.0}; | ^ [ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx [ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/coordinates.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In function ‘void verifyNumPoints(BoundaryRegion*, int)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:80:21: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 80 | if (mesh->firstY()) { | ~~~~~~~~~~~~^~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field_factory.hxx:32, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_standard.hxx:9, from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:1: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:83:20: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 83 | if (mesh->lastY()) { | ~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:473:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 473 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 | t); | ~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field_data.hxx:51, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field.hxx:39, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:34, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_op.hxx:9, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_standard.hxx:6: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:517:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 517 | val = fg->generate(xnorm, TWOPI * ynorm, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 518 | TWOPI * (zk - 0.5) / (mesh->LocalNz), t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O3::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:978:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 978 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 979 | t); | ~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O4::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:1444:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 1444 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1445 | t); | ~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryNeumann::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:2152:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 2152 | val = fg->generate(xnorm, TWOPI * ynorm, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2153 | TWOPI * (zk - 0.5) / (mesh->LocalNz), t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ [ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -MF 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CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/difops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/difops.cxx [ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx [ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx: In function ‘FV::communicateFluxes(Field3D&)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx:471:15: warning: ‘xout’ may be used uninitialized [-Wmaybe-uninitialized] 471 | mesh->wait(xout); | ~~~~~~~~~~^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx:442:20: note: ‘xout’ was declared here 442 | comm_handle xin, xout; | ^~~~ [ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/index_derivs.cxx [ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation_xz.cxx [ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/bilinear_xz.cxx In file included from /usr/include/c++/14/bits/shared_ptr.h:53, from /usr/include/c++/14/memory:80, from /usr/include/fmt/core.h:16, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/msg_stack.hxx:37, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/scorepwrapper.hxx:6, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/deriv_store.hxx:37, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:48, from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.hxx:8, from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:36: In member function ‘std::__shared_ptr, (__gnu_cxx::_Lock_policy)2>::operator bool() const’, inlined from ‘std::operator== >(std::shared_ptr > const&, decltype(nullptr))bool’ at /usr/include/c++/14/bits/shared_ptr.h:561:14, inlined from ‘Array >::empty() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/array.hxx:270:44, inlined from ‘Field3D::isAllocated() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field3d.hxx:203:48, inlined from ‘BoutMesh::pack_data(std::vector > const&, int, int, int, int, double*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:2256:7: /usr/include/c++/14/bits/shared_ptr_base.h:1671:16: warning: potential null pointer dereference [-Wnull-dereference] 1671 | { return _M_ptr != nullptr; } | ^~~~~~ In member function ‘std::__shared_ptr, (__gnu_cxx::_Lock_policy)2>::operator bool() const’, inlined from ‘std::operator== >(std::shared_ptr > const&, decltype(nullptr))bool’ at /usr/include/c++/14/bits/shared_ptr.h:561:14, inlined from ‘Array >::empty() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/array.hxx:270:44, inlined from ‘Field2D::isAllocated() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:106:48, inlined from ‘BoutMesh::pack_data(std::vector > const&, int, int, int, int, double*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:2267:7: /usr/include/c++/14/bits/shared_ptr_base.h:1671:16: warning: potential null pointer dereference [-Wnull-dereference] 1671 | { return _M_ptr != nullptr; } | ^~~~~~ [ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/hermite_spline_xz.cxx [ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/hermite_spline_z.cxx [ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/interpolation_z.cxx [ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o -MF CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/physics/physicsmodel.cxx [ 62%] Building CXX object CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o -MF CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/physics/smoothing.cxx [ 62%] Building CXX object CMakeFiles/bout++.dir/src/physics/snb.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/snb.cxx.o -MF CMakeFiles/bout++.dir/src/physics/snb.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/snb.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/physics/snb.cxx [ 62%] Building CXX object CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o -MF CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/physics/sourcex.cxx [ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/adams_bashforth/adams_bashforth.cxx [ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/arkode/arkode.cxx [ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx: In member function ‘virtual int CvodeSolver::init()’: /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:387:33: warning: ‘int CVSpilsSetLinearSolver(void*, SUNLinearSolver)’ is deprecated: use CVodeSetLinearSolver instead [-Wdeprecated-declarations] 387 | if (CVSpilsSetLinearSolver(cvode_mem, sun_solver) != CV_SUCCESS) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:49: /usr/include/mpich-x86_64/cvode/cvode_spils.h:43:5: note: declared here 43 | int CVSpilsSetLinearSolver(void *cvode_mem, SUNLinearSolver LS); | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:425:37: warning: ‘int CVSpilsSetPreconditioner(void*, CVSpilsPrecSetupFn, CVSpilsPrecSolveFn)’ is deprecated: use CVodeSetPreconditioner instead [-Wdeprecated-declarations] 425 | if (CVSpilsSetPreconditioner(cvode_mem, nullptr, cvode_pre_shim)) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/mpich-x86_64/cvode/cvode_spils.h:49:5: note: declared here 49 | int CVSpilsSetPreconditioner(void *cvode_mem, CVSpilsPrecSetupFn pset, | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:437:33: warning: ‘int CVSpilsSetLinearSolver(void*, SUNLinearSolver)’ is deprecated: use CVodeSetLinearSolver instead [-Wdeprecated-declarations] 437 | if (CVSpilsSetLinearSolver(cvode_mem, sun_solver) != CV_SUCCESS) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/mpich-x86_64/cvode/cvode_spils.h:43:5: note: declared here 43 | int CVSpilsSetLinearSolver(void *cvode_mem, SUNLinearSolver LS); | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:451:29: warning: ‘int CVSpilsSetJacTimes(void*, CVSpilsJacTimesSetupFn, CVSpilsJacTimesVecFn)’ is deprecated: use CVodeSetJacTimes instead [-Wdeprecated-declarations] 451 | if (CVSpilsSetJacTimes(cvode_mem, nullptr, cvode_jac) != CV_SUCCESS) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/mpich-x86_64/cvode/cvode_spils.h:53:5: note: declared here 53 | int CVSpilsSetJacTimes(void *cvode_mem, CVSpilsJacTimesSetupFn jtsetup, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx: In member function ‘virtual int CvodeSolver::run()’: /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:546:28: warning: ‘int CVSpilsGetNumPrecSolves(void*, long int*)’ is deprecated: use CVodeGetNumPrecSolves instead [-Wdeprecated-declarations] 546 | CVSpilsGetNumPrecSolves(cvode_mem, &temp_long_int); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/mpich-x86_64/cvode/cvode_spils.h:64:5: note: declared here 64 | int CVSpilsGetNumPrecSolves(void *cvode_mem, long int *npsolves); | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:548:26: warning: ‘int CVSpilsGetNumLinIters(void*, long int*)’ is deprecated: use CVodeGetNumLinIters instead [-Wdeprecated-declarations] 548 | CVSpilsGetNumLinIters(cvode_mem, &temp_long_int); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/mpich-x86_64/cvode/cvode_spils.h:67:5: note: declared here 67 | int CVSpilsGetNumLinIters(void *cvode_mem, long int *nliters); | ^~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/euler/euler.cxx [ 68%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/imex-bdf2/imex-bdf2.cxx [ 68%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/petsc/petsc.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx: In member function ‘virtual int IdaSolver::init()’: /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx:199:30: warning: ‘int IDASpilsSetLinearSolver(void*, SUNLinearSolver)’ is deprecated: use IDASetLinearSolver instead [-Wdeprecated-declarations] 199 | if (IDASpilsSetLinearSolver(idamem, sun_solver) != IDA_SUCCESS) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx:45: /usr/include/mpich-x86_64/ida/ida_spils.h:44:5: note: declared here 44 | int IDASpilsSetLinearSolver(void *ida_mem, SUNLinearSolver LS); | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx:234:36: warning: ‘int IDASpilsSetPreconditioner(void*, IDASpilsPrecSetupFn, IDASpilsPrecSolveFn)’ is deprecated: use IDASetPreconditioner instead [-Wdeprecated-declarations] 234 | if (IDASpilsSetPreconditioner(idamem, nullptr, ida_pre_shim)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/mpich-x86_64/ida/ida_spils.h:47:5: note: declared here 47 | int IDASpilsSetPreconditioner(void *ida_mem, IDASpilsPrecSetupFn pset, | ^~~~~~~~~~~~~~~~~~~~~~~~~ [ 68%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/rk3-ssp/rk3-ssp.cxx [ 71%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/rk4/rk4.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects 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/usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o -MF CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/bout_types.cxx [ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o -MF CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/boutcomm.cxx [ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -MF CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/boutexception.cxx [ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/derivs.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -MF CMakeFiles/bout++.dir/src/sys/derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/derivs.cxx [ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -MF CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx [ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -MF CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/generator_context.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx: In member function ‘virtual double FieldGenerator::generate(const bout::generator::Context&)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx:43:18: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 43 | return generate(ctx.x(), ctx.y(), ctx.z(), ctx.t()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx:25: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ [ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer 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CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/hyprelib.cxx [ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o -MF CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/msg_stack.cxx [ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference 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CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o CMakeFiles/bout++.dir/src/sys/options.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o CMakeFiles/bout++.dir/src/sys/output.cxx.o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o CMakeFiles/bout++.dir/src/sys/range.cxx.o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o CMakeFiles/bout++.dir/src/sys/timer.cxx.o CMakeFiles/bout++.dir/src/sys/type_name.cxx.o CMakeFiles/bout++.dir/src/sys/utils.cxx.o "CMakeFiles/bout++.dir/bout++-time.cxx.o" -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib: /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/libfmt.so.10.2.1 lib/libpvode.so.1.0.0 lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl -ldl /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libnetcdf.so /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplace/impls/spt/spt.cxx: In member function ‘__ct_base ’: /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplace/impls/spt/spt.cxx:68:37: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 68 | alldata = new SPT_data[ye - ys + 1]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.1.0 lib/libbout++.so.5.1.0 lib/libbout++.so gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 91%] Built target bout++ /usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 91%] Generating resolve_enum.pxd [ 91%] Generating boutcpp.pxd [ 91%] Generating helper.cxx [ 94%] Generating boutpp.pyx cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py helper.cxx.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/helper.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/boutcpp.pxd cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py boutpp.pyx.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/boutpp.pyx cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/resolve_enum.pxd [ 94%] Generating helper.h cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py helper.h.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/helper.h [ 94%] Cythonizing python interface cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/python3.12 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True warning: resolve_enum.pxd:49:21: 'deflt' redeclared warning: resolve_enum.pxd:189:24: 'Standard' redeclared warning: resolve_enum.pxd:223:15: 'Standard' redeclared warning: bout_options.pxd:22:21: Rvalue-reference as function argument not supported warning: bout_options.pxd:24:32: Rvalue-reference as function argument not supported performance hint: libboutpp.pyx:2065:5: Exception check on 'callback' will always require the GIL to be acquired. Possible solutions: 1. Declare 'callback' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'callback' to allow an error code to be returned. cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 94%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/libboutpp.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/libboutpp.cpp.o -MF CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/libboutpp.cpp.o.d -o CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp [ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/boutexception_helper.cxx.o [ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/helper.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/helper.cxx.o -MF CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/helper.cxx.o.d -o CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/helper.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -MF CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/boutexception_helper.cxx.o.d -o CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/boutexception_helper.cxx In file included from /usr/include/numpy/ndarraytypes.h:1929, from /usr/include/numpy/ndarrayobject.h:12, from /usr/include/numpy/arrayobject.h:5, from /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:1233: /usr/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:40867:46: warning: ‘__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function] 40867 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘__pyx_f_12resolve_enum_resolve_cell_loc(_object*)’: /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:9307:10: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized] 9307 | return __pyx_r; | ^~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:8950:12: note: ‘__pyx_r’ was declared here 8950 | CELL_LOC __pyx_r; | ^~~~~~~ In function ‘__pyx_pf_9libboutpp_54bracket(_object*, __pyx_obj_9libboutpp_Field3D*, __pyx_obj_9libboutpp_Field3D*, _object*, _object*)’, inlined from ‘__pyx_pw_9libboutpp_55bracket(_object*, _object* const*, long, _object*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:64889:42: /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:64983:65: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized] 64983 | __pyx_t_1 = ((PyObject *)__pyx_f_9libboutpp_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2989, __pyx_L1_error) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘__pyx_pw_9libboutpp_55bracket(_object*, _object* const*, long, _object*)’: /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:10818:18: note: ‘__pyx_r’ was declared here 10818 | BRACKET_METHOD __pyx_r; | ^~~~~~~ [ 97%] Linking CXX shared library libboutpp.cpython-312-x86_64-linux-gnu.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E cmake_link_script CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libboutpp.cpython-312-x86_64-linux-gnu.so -o libboutpp.cpython-312-x86_64-linux-gnu.so "CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/libboutpp.cpp.o" "CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/helper.cxx.o" "CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/boutexception_helper.cxx.o" -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib: ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 97%] Built target boutpp.cpython-312-x86_64-linux-gnu /usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [100%] Building python interface cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpython-312-x86_64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-312-x86_64-linux-gnu.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/../boutpp/__init__.py gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [100%] Built target boutpp gmake[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles 0 + PYPA= + LDPA=/usr/lib64/mpich/lib ++ pwd + export PYTHONPATH=:/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/ + PYTHONPATH=:/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/ ++ pwd + export LD_LIBRARY_PATH=/usr/lib64/mpich/lib:/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib/ + LD_LIBRARY_PATH=/usr/lib64/mpich/lib:/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib/ + /usr/bin/cmake --build build_mpich/manual -j4 --verbose Change Dir: '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0 cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual//CMakeFiles/progress.marks cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/gmake -f CMakeFiles/Makefile2 manual/all gmake[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/gmake -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/CMakeFiles/sphinx-html.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/gmake -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Generating HTML documentation with Sphinx in /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/docs cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual && /usr/bin/sphinx-build -b html /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/docs Running Sphinx v7.2.6 breathe module not installed recommonmark module not installed making output directory... done building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 46 source files that are out of date updating environment: [new config] 46 added, 0 changed, 0 removed No mlab available reading sources... [100%] user_docs/variable_init /usr/lib/python3.12/site-packages/boutdata/collect.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :no-index: for one of them WARNING: autodoc: failed to import module 'mayavi2' from module 'boutdata'; the following exception was raised: No module named 'enthought' /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:5: ERROR: Unexpected indentation. /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:6: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:56: WARNING: Footnote [1] is not referenced. docstring of libboutpp.PhysicsModel:14: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/boutpp/__init__.py:docstring of libboutpp.create3D:3: ERROR: Unexpected indentation. WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised: No module named 'crosslines' WARNING: autodoc: failed to import module 'anim' from module 'boututils'; the following exception was raised: No module named 'tvtk' WARNING: autodoc: failed to import module 'boutgrid' from module 'boututils'; the following exception was raised: No module named 'tvtk' /usr/lib/python3.12/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation. WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'efit_analyzer' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'volume_integral' from module 'boututils'; the following exception was raised: No module named 'past' /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.DommaschkPotentials:3: ERROR: Unexpected indentation. /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :no-index: for one of them /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.boundary:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :no-index: for one of them /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse:3: ERROR: Unexpected indentation. /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse.coil:3: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/file_io.rst:114: ERROR: Unknown interpreted text role "py". /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/performance_profiling.rst:85: WARNING: Inline literal start-string without end-string. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/boundary_options.rst:120: WARNING: Footnote [#] is not referenced. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:447: WARNING: Title underline too short. Working with an active ``conda`` environment ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:453: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:454: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/lib/python3.12/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :no-index: for one of them /usr/lib/python3.12/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :no-index: for one of them /usr/lib/python3.12/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :no-index: for one of them /usr/lib/python3.12/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :no-index: for one of them /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/running_bout.rst:462: WARNING: Literal block expected; none found. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... WARNING: unsupported theme option 'repository_url' given WARNING: unsupported theme option 'repository_branch' given WARNING: unsupported theme option 'path_to_docs' given WARNING: unsupported theme option 'use_edit_page_button' given WARNING: unsupported theme option 'use_repository_button' given WARNING: unsupported theme option 'use_issues_button' given WARNING: unsupported theme option 'home_page_in_toc' given done copying assets... copying static files... done copying extra files... done done writing output... [100%] user_docs/variable_init /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator.normal' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] numpy.random.Generator.normal -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] numpy.random.Generator.normal -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator.normal -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator.normal -----^ /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] numpy.random.Generator -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] numpy.random.Generator -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator -----^ /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: undefined label: 'random-quick-start' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:148: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:154: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:156: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:160: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:166: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:168: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:181: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:183: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:187: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:191: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:200: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:212: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:220: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:224: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:229: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:231: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:247: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx' generating indices... /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:251: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:255: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:259: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:263: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:266: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:270: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:278: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:280: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:300: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:302: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:304: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:312: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:318: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:320: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:322: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/laplacian.rst:185: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/output_and_post.rst:580: WARNING: Lexing literal_block 'AppendTo[$Path,"/full/path/to/BOUT/tools/mathematicalib"]' as "mathematica" resulted in an error at token: '$'. Retrying in relaxed mode. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/time_integration.rst:1030: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' genindex py-modindex done writing additional pages... search done copying images... [100%] figs/init_balloon.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 115 warnings. The HTML pages are in docs. cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual && /usr/bin/cmake -E echo Generated\ HTML\ docs\ in\ file:///builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/docs/index.html Generated HTML docs in file:///builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/docs/index.html gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target sphinx-html /usr/bin/gmake -f manual/CMakeFiles/docs.dir/build.make manual/CMakeFiles/docs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/CMakeFiles/docs.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/gmake -f manual/CMakeFiles/docs.dir/build.make manual/CMakeFiles/docs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' gmake[2]: Nothing to be done for 'manual/CMakeFiles/docs.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target docs gmake[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles 0 + export LD_LIBRARY_PATH=/usr/lib64/mpich/lib + LD_LIBRARY_PATH=/usr/lib64/mpich/lib + export PYTHONPATH= + PYTHONPATH= + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/mpich/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval 'unset LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.9nDET8 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64 ++ dirname /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BOUT++-v5.1.0 + for mpi in openmpi mpich + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH; MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN; MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES; CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + DESTDIR=/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64 + /usr/bin/cmake --install build_openmpi -- Install configuration: "RelWithDebInfo" -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/python3.12/site-packages/openmpi/boutpp/libboutpp.cpython-312-x86_64-linux-gnu.so -- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/python3.12/site-packages/openmpi/boutpp/libboutpp.cpython-312-x86_64-linux-gnu.so" to "///usr/lib64/openmpi/lib" -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/python3.12/site-packages/openmpi/boutpp/__init__.py -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/openmpi/lib/libpvode.so.1.0.0 -- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/openmpi/lib/libpvode.so.1.0.0" to "///usr/lib64/openmpi/lib" -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/openmpi/lib/libpvode.so -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/openmpi/lib/libpvpre.so.1.0.0 -- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/openmpi/lib/libpvpre.so.1.0.0" to "///usr/lib64/openmpi/lib" -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/openmpi/lib/libpvpre.so -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/openmpi-x86_64/bout++ -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/openmpi-x86_64/bout++/pvode -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/openmpi-x86_64/bout++/pvode/vector.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/openmpi-x86_64/bout++/pvode/spgmr.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/openmpi-x86_64/bout++/pvode/smalldense.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/openmpi-x86_64/bout++/pvode/pvbbdpre.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/openmpi-x86_64/bout++/pvode/nvector.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/openmpi-x86_64/bout++/pvode/llnltyps.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/openmpi-x86_64/bout++/pvode/llnlmath.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/openmpi-x86_64/bout++/pvode/iterativ.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/openmpi-x86_64/bout++/pvode/cvspgmr.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/openmpi-x86_64/bout++/pvode/cvode.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/openmpi-x86_64/bout++/pvode/cvdiag.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/openmpi-x86_64/bout++/pvode/band.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/openmpi/lib/cmake/PVODE/PVODETargets.cmake -- Installing: 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/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/openmpi/lib/cmake/bout++/ResolveCompilerPaths.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/openmpi/lib/cmake/bout++/bout++Config.cmake ++ find /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/python3.12/site-packages/openmpi ++ grep -E '/libbout|/libpvode|/libpvpre' + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libbout++.so /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libbout++.so: RUNPATH=///usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libbout++.so: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libbout++.so.5.1.0 /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libbout++.so.5.1.0: RUNPATH=/usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libbout++.so.5.1.0: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libpvpre.so /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libpvpre.so: RUNPATH=///usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libpvpre.so: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libpvpre.so.1.0.0 /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libpvpre.so.1.0.0: RUNPATH=/usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libpvpre.so.1.0.0: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libpvode.so /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libpvode.so: RUNPATH=///usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libpvode.so: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libpvode.so.1.0.0 /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libpvode.so.1.0.0: RUNPATH=/usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/openmpi/lib/libpvode.so.1.0.0: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/python3.12/site-packages/openmpi/boutpp/libboutpp.cpython-312-x86_64-linux-gnu.so 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Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++//_static/plus.png -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++//_static/searchtools.js -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++//_static/sphinx_highlight.js -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++//_static/pygments.css + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/openmpi/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval 'unset MPI_COMPILER; unset LD_LIBRARY_PATH; unset MPI_MAN; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset _LMFILES_; unset LOADEDMODULES; unset CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in openmpi mpich + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ LOADEDMODULES= ++++ export LOADEDMODULES ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_; LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; test 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + DESTDIR=/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64 + /usr/bin/cmake --install build_mpich -- Install configuration: "RelWithDebInfo" -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/python3.12/site-packages/mpich/boutpp/libboutpp.cpython-312-x86_64-linux-gnu.so -- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/python3.12/site-packages/mpich/boutpp/libboutpp.cpython-312-x86_64-linux-gnu.so" to "///usr/lib64/mpich/lib" -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/python3.12/site-packages/mpich/boutpp/__init__.py -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/libpvode.so.1.0.0 -- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/libpvode.so.1.0.0" to "///usr/lib64/mpich/lib" -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/libpvode.so -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/libpvpre.so.1.0.0 -- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/libpvpre.so.1.0.0" to "///usr/lib64/mpich/lib" -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/libpvpre.so -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++ -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/pvode -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/pvode/vector.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/pvode/spgmr.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/pvode/smalldense.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/pvode/pvbbdpre.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/pvode/nvector.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/pvode/llnltyps.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/pvode/llnlmath.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/pvode/iterativ.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/pvode/cvspgmr.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/pvode/cvode.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/pvode/cvdiag.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/pvode/band.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/cmake/PVODE/PVODETargets.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/cmake/PVODE/PVODETargets-relwithdebinfo.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/locale/es/LC_MESSAGES/libbout.mo -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/locale/de/LC_MESSAGES/libbout.mo -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/locale/fr/LC_MESSAGES/libbout.mo -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/locale/zh_CN/LC_MESSAGES/libbout.mo -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/locale/zh_TW/LC_MESSAGES/libbout.mo -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/libbout++.so.5.1.0 -- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/libbout++.so.5.1.0" to "///usr/lib64/mpich/lib" -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/libbout++.so -- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++ -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/where.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/vector3d.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/vector2d.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/vecops.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/utils.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/unused.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/stencils.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/sourcex.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/smoothing.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/parallel_boundary_region.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/parallel_boundary_op.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/output.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/optionsreader.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/options_netcdf.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/options.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/multiostream.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/msg_stack.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/mask.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/lapack_routines.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/invert_parderiv.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/invert_laplace.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/interpolation_z.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/interpolation_xz.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/interpolation.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/initialprofiles.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/gyro_average.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/globals.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/fieldperp.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/field_factory.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/field_data.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/field3d.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/field2d.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/field.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/fft.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/difops.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/derivs.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/dcomplex.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/cyclic_reduction.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/boutexception.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/boutcomm.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout_types.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/where.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/vectormetric.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/vector3d.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/vector2d.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/vecops.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/utils.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/unused.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/traits.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/template_combinations.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/sys -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/sys/variant.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/sys/uncopyable.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/sys/type_name.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/sys/timer.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/sys/range.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/sys/gettext.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/sys/generator_context.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/sys/expressionparser.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/surfaceiter.hxx -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/include/mpich-x86_64/bout++/bout/sundials_backports.hxx -- Installing: 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/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/cmake/bout++/FindnetCDFCxx.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/cmake/bout++/FindPackageMultipass.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/cmake/bout++/FindLibuuid.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/cmake/bout++/FindPETSc.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/cmake/bout++/FindScoreP.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/cmake/bout++/FindSLEPc.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/cmake/bout++/FindSUNDIALS.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/cmake/bout++/FindSphinx.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/cmake/bout++/ResolveCompilerPaths.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/mpich/lib/cmake/bout++/bout++Config.cmake ++ find /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/python3.12/site-packages/mpich ++ grep -E '/libbout|/libpvode|/libpvpre' + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libbout++.so /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libbout++.so: RUNPATH=///usr/lib64/mpich/lib:/usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libbout++.so: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libbout++.so.5.1.0 /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libbout++.so.5.1.0: RUNPATH=/usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libbout++.so.5.1.0: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libpvpre.so /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libpvpre.so: RUNPATH=///usr/lib64/mpich/lib:/usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libpvpre.so: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libpvpre.so.1.0.0 /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libpvpre.so.1.0.0: RUNPATH=/usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libpvpre.so.1.0.0: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libpvode.so /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libpvode.so: RUNPATH=///usr/lib64/mpich/lib:/usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libpvode.so: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libpvode.so.1.0.0 /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libpvode.so.1.0.0: RUNPATH=/usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/mpich/lib/libpvode.so.1.0.0: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/python3.12/site-packages/mpich/boutpp/libboutpp.cpython-312-x86_64-linux-gnu.so /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/python3.12/site-packages/mpich/boutpp/libboutpp.cpython-312-x86_64-linux-gnu.so: RUNPATH=///usr/lib64/mpich/lib:/usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64//usr/lib64/python3.12/site-packages/mpich/boutpp/libboutpp.cpython-312-x86_64-linux-gnu.so: new RUNPATH: /usr/lib64/mpich/lib + rm -rf /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/bout++ + mkdir -p /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/modulefiles/bout++ + cat + DESTDIR=/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64 + /usr/bin/cmake --install build_mpich/manual -- Install configuration: "RelWithDebInfo" -- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++/ -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++//objects.inv -- Installing: 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Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++//_static/plus.png -- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++//_static/searchtools.js -- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++//_static/sphinx_highlight.js -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++//_static/pygments.css + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/mpich/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval 'unset LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + /usr/lib/rpm/find-lang.sh /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64 libbout + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 5.1.0-7.fc40 --unique-debug-suffix -5.1.0-7.fc40.x86_64 --unique-debug-src-base bout++-5.1.0-7.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/BOUT++-v5.1.0 find-debuginfo: starting Extracting debug info from 8 files DWARF-compressing 8 files sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/bout++-5.1.0-7.fc40.x86_64 21586 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/lib64/mpich/bin/bout-config from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/mpich/bin/bout-add-mod-path from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-archive-helper.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mpich/bin/bout-boutdata-restart-create from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-build-deps.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mpich/bin/bout-changelog-generator.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-log-color from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/mpich/bin/bout-sonnet from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-stop-script from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mpich/bin/bout-v5-factory-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-format-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-header-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-input-file-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-macro-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-physics-model-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-xzinterpolation-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout_3to4.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout_4to5 from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/openmpi/bin/bout-config from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/openmpi/bin/bout-add-mod-path from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-archive-helper.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib64/openmpi/bin/bout-boutdata-restart-create from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-build-deps.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib64/openmpi/bin/bout-changelog-generator.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-log-color from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/openmpi/bin/bout-sonnet from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-stop-script from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/openmpi/bin/bout-v5-factory-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-format-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-header-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-input-file-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-macro-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-physics-model-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-xzinterpolation-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout_3to4.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout_4to5 from /bin/bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib/debug/usr/lib64/python3.12 using python3.12 Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/lib64/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.bCDhWe + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BOUT++-v5.1.0 + for mpi in openmpi mpich + fail=1 + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH; MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN; MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES; CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ~/build/BUILD/BOUT++-v5.1.0/build_openmpi ~/build/BUILD/BOUT++-v5.1.0 ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + pushd build_openmpi + export OMPI_MCA_rmaps_base_oversubscribe=yes + OMPI_MCA_rmaps_base_oversubscribe=yes + export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + export HDF5_USE_FILE_LOCKING=FALSE + HDF5_USE_FILE_LOCKING=FALSE + sed 's/ 3s / 30s /' tests/integrated/test-coordinates-initialization/runtest #!/bin/bash # Cores: 3 make || exit test -z $MPIRUN && MPIRUN='mpirun -np' # Kill the test after 3 seconds, if it hasn't already exited OMP_NUM_THREADS=1 $MPIRUN 3 timeout 30s ./test-coordinates-initialization e=$? if test $e -ne 0 then echo "The test failed. That can be caused by a timeout." echo "If this test is run on high load, it may fail occasionally." echo "The load is:" uptime fi exit $e + make -j4 build-check /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 build-check make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 72 make -f CMakeFiles/Makefile2 CMakeFiles/build-check.dir/all make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 0%] Building CXX object tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest && /usr/lib64/openmpi/bin/mpicxx -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_HAS_PTHREAD=0 -Dgtest_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wshadow -Werror -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=0 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/src/gtest-all.cc [ 1%] Built target pvpre [ 4%] Built target pvode make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 43%] Built target bout++ make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/depend make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/depend make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection/CMakeFiles/MMS-advection.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/build make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 44%] Building CXX object tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o [ 44%] Building CXX object tests/MMS/advection/CMakeFiles/MMS-advection.dir/advection.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/advection/CMakeFiles/MMS-advection.dir/advection.cxx.o -MF CMakeFiles/MMS-advection.dir/advection.cxx.o.d -o CMakeFiles/MMS-advection.dir/advection.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/advection/advection.cxx [ 44%] Building CXX object tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o -MF CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o.d -o CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y/wave.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o -MF CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o.d -o CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion/diffusion.cxx [ 44%] Linking CXX executable wave cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d-y.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o" -o wave -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 44%] Built target MMS-wave-1d-y make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 45%] Building CXX object tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o -MF CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o.d -o CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci/fci_mms.cxx [ 45%] Linking CXX executable cyto cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-diffusion.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o" -o cyto -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 45%] Linking CXX executable advection cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-advection.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-advection.dir/advection.cxx.o" -o advection -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 45%] Built target MMS-diffusion make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 45%] Building CXX object tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/wave.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/wave.cxx.o -MF CMakeFiles/MMS-wave-1d.dir/wave.cxx.o.d -o CMakeFiles/MMS-wave-1d.dir/wave.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d/wave.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 45%] Built target MMS-advection make -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 45%] Building CXX object tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown-weights && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -MF CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o.d -o CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights/test_yupdown_weights.cxx [ 45%] Linking CXX executable fci_mms cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-spatial-fci.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o" -o fci_mms -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../../lib/libpvode.so.1.0.0 ../../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 47%] Linking CXX executable test_yupdown_weights cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown-weights && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown-weights.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o" -o test_yupdown_weights -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 47%] Built target test-yupdown-weights make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 50%] Built target boutpp.cpython-312-x86_64-linux-gnu make -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 50%] Building CXX object tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-backtrace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -MF CMakeFiles/test-backtrace.dir/boutexcept.cxx.o.d -o CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace/boutexcept.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 50%] Built target MMS-spatial-fci make -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 50%] Building CXX object tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-beuler && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o -MF CMakeFiles/test_beuler.dir/test_beuler.cxx.o.d -o CMakeFiles/test_beuler.dir/test_beuler.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler/test_beuler.cxx [ 50%] Linking CXX executable boutexcept cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-backtrace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-backtrace.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-backtrace.dir/boutexcept.cxx.o" -o boutexcept -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 50%] Built target test-backtrace make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 50%] Building CXX object tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-bout-override-default-option && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -MF CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o.d -o CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option/test-bout-override-default-option.cxx [ 50%] Linking CXX executable wave cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-wave-1d.dir/wave.cxx.o" -o wave -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 50%] Built target MMS-wave-1d make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 51%] Building CXX object tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-command-args && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o -MF CMakeFiles/test-command-args.dir/command-args.cxx.o.d -o CMakeFiles/test-command-args.dir/command-args.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args/command-args.cxx [ 52%] Linking CXX shared library ../../../../../lib/libgtest.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgtest.so.1.10.0 -o ../../../../../lib/libgtest.so.1.10.0 "CMakeFiles/gtest.dir/src/gtest-all.cc.o" [ 52%] Linking CXX executable command-args cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-command-args && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-command-args.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-command-args.dir/command-args.cxx.o" -o command-args -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 52%] Built target test-command-args make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-communications/CMakeFiles/test-communications.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 52%] Building CXX object tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-communications && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o -MF CMakeFiles/test-communications.dir/test-communications.cxx.o.d -o CMakeFiles/test-communications.dir/test-communications.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications/test-communications.cxx [ 52%] Linking CXX executable test_beuler cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-beuler && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_beuler.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_beuler.dir/test_beuler.cxx.o -o test_beuler -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 52%] Linking CXX executable test-bout-override-default-option cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-bout-override-default-option && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-bout-override-default-option.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o" -o test-bout-override-default-option -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 52%] Built target test_beuler make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 54%] Building CXX object tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-coordinates-initialization && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -MF CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o.d -o CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization/test-coordinates-initialization.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 54%] Built target test-bout-override-default-option make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 54%] Linking CXX executable test-communications cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-communications && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-communications.dir/link.txt --verbose=1 [ 54%] Building CXX object tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-cyclic && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -MF CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o.d -o CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic/test_cyclic.cxx /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-communications.dir/test-communications.cxx.o" -o test-communications -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 54%] Linking CXX executable test-coordinates-initialization cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-coordinates-initialization && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-coordinates-initialization.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o" -o test-coordinates-initialization -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgtest.so.1.10.0 ../../../../../lib/libgtest.so.1.10.0 ../../../../../lib/libgtest.so make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 54%] Built target gtest make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 54%] Building CXX object tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-delp2 && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o -MF CMakeFiles/test-delp2.dir/test_delp2.cxx.o.d -o CMakeFiles/test-delp2.dir/test_delp2.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2/test_delp2.cxx [ 54%] Built target test-coordinates-initialization make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 55%] Building CXX object tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-datafilefacade && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -MF CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o.d -o CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade/test-datafile-facade.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 55%] Built target test-communications make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 55%] Building CXX object tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability/2fluid.cxx [ 55%] Linking CXX executable test-datafile-facade cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-datafilefacade && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-datafile-facade.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o" -o test-datafile-facade -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 55%] Built target test-datafile-facade make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 56%] Building CXX object tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability-staggered && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered/2fluid.cxx [ 56%] Linking CXX executable test_delp2 cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-delp2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-delp2.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-delp2.dir/test_delp2.cxx.o" -o test_delp2 -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 56%] Linking CXX executable test_cyclic cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-cyclic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-cyclic.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o" -o test_cyclic -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 56%] Built target test-delp2 make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 56%] Building CXX object tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-fieldgroupComm && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -MF CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o.d -o CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm/test_fieldgroupcomm.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 56%] Built target test-cyclic make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 58%] Building CXX object tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata.dir/test_griddata.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata/test_griddata.cxx [ 58%] Linking CXX executable 2fluid cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-drift-instability.dir/2fluid.cxx.o" -o 2fluid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 58%] Linking CXX executable test_fieldgroupcomm cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-fieldgroupComm && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fieldgroupComm.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o" -o test_fieldgroupcomm -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 58%] Linking CXX executable test_griddata cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-griddata.dir/test_griddata.cxx.o" -o test_griddata -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 58%] Built target test-griddata make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 58%] Building CXX object tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata-yboundary-guards && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards/test_griddata.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 58%] Built target test-fieldgroupComm make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 58%] Building CXX object tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-gyro && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o -MF CMakeFiles/test-gyro.dir/test_gyro.cxx.o.d -o CMakeFiles/test-gyro.dir/test_gyro.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro/test_gyro.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 58%] Built target test-drift-instability make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-initial/CMakeFiles/test-initial.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 58%] Building CXX object tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-initial && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o -MF CMakeFiles/test-initial.dir/test_initial.cxx.o.d -o CMakeFiles/test-initial.dir/test_initial.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial/test_initial.cxx [ 58%] Linking CXX executable 2fluid cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability-staggered.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o" -o 2fluid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 58%] Linking CXX executable test_griddata cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata-yboundary-guards && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata-yboundary-guards.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o" -o test_griddata -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 59%] Linking CXX executable test_gyro cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-gyro && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-gyro.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-gyro.dir/test_gyro.cxx.o" -o test_gyro -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 59%] Built target test-griddata-yboundary-guards make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 59%] Building CXX object tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interchange-instability && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability/2fluid.cxx [ 59%] Linking CXX executable test_initial cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-initial && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-initial.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-initial.dir/test_initial.cxx.o" -o test_initial -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 59%] Built target test-gyro make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 59%] Building CXX object tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate/test_interpolate.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 59%] Built target test-initial make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 59%] Building CXX object tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate-z && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z/test_interpolate.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 59%] Built target test-drift-instability-staggered make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 59%] Building CXX object tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invertable-operator && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -MF CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o.d -o CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator/invertable_operator.cxx In file included from /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator/invertable_operator.cxx:4: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx: In instantiation of ‘PetscErrorCode bout::inversion::InvertableOperator::setup() [with T = Field3D; PetscErrorCode = int]’: /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator/invertable_operator.cxx:51:19: required from here 51 | mySolver.setup(); | ~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 222 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~~^~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:44: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 222 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 222 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 222 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:225:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 225 | if (localmesh->firstY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:225:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 225 | if (localmesh->firstY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:231:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 231 | if (localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:231:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 231 | if (localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 262 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 262 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 262 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 262 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:265:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 265 | if (localmesh->firstY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:265:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 265 | if (localmesh->firstY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:270:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 270 | if (localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:270:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 270 | if (localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ [ 61%] Linking CXX executable 2fluid cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interchange-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interchange-instability.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o" -o 2fluid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 61%] Linking CXX executable test_interpolate cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o" -o test_interpolate -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 62%] Linking CXX executable test_interpolate cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate-z && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate-z.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o" -o test_interpolate -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 62%] Built target test-interpolate make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 62%] Building CXX object tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invpar && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o -MF CMakeFiles/test-invpar.dir/test_invpar.cxx.o.d -o CMakeFiles/test-invpar.dir/test_invpar.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar/test_invpar.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 62%] Built target test-interpolate-z make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 62%] Building CXX object tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o -MF CMakeFiles/test-laplace.dir/test_laplace.cxx.o.d -o CMakeFiles/test-laplace.dir/test_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace/test_laplace.cxx [ 62%] Linking CXX executable invertable_operator cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invertable-operator && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invertable-operator.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o" -o invertable_operator -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 62%] Built target test-interchange-instability make -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 62%] Building CXX object tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace-petsc3d && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -MF CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o.d -o CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d/test-laplace3d.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 62%] Built target test-invertable-operator make -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 62%] Building CXX object tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-fv && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv/test-laplacexy.cxx [ 62%] Linking CXX executable test_laplace cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplace.dir/test_laplace.cxx.o" -o test_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 63%] Linking CXX executable test_invpar cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invpar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invpar.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-invpar.dir/test_invpar.cxx.o" -o test_invpar -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 65%] Linking CXX executable test-laplace3d cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace-petsc3d && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace-petsc3d.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o" -o test-laplace3d -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 65%] Built target test-laplace make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 65%] Building CXX object tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-short && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short/test-laplacexy.cxx [ 65%] Linking CXX executable test-laplacexy cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-fv && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-fv.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o" -o test-laplacexy -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 65%] Built target test-laplace-petsc3d make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/DependInfo.cmake "--color=" [ 65%] Built target test-invpar make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/depend make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 66%] Building CXX object tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexz && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -MF CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o.d -o CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz/test-laplacexz.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 66%] Building CXX object tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-multigrid_laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -MF CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o.d -o CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace/test_multigrid_laplace.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 66%] Built target test-laplacexy-fv make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 68%] Building CXX object tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-naulin-laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -MF CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o.d -o CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace/test_naulin_laplace.cxx [ 68%] Linking CXX executable test-laplacexy cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-short && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-short.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o" -o test-laplacexy -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 68%] Built target test-laplacexy-short make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 68%] Building CXX object tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-options-netcdf && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -MF CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o.d -o CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf/test-options-netcdf.cxx [ 68%] Linking CXX executable test-laplacexz cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexz && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexz.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o" -o test-laplacexz -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 68%] Linking CXX executable test_multigrid_laplace cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-multigrid_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-multigrid-laplace.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o" -o test_multigrid_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 68%] Built target test-laplacexz make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build [ 68%] Linking CXX executable test_naulin_laplace cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-naulin-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-naulin-laplace.dir/link.txt --verbose=1 make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o" -o test_naulin_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 69%] Building CXX object tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -MF CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o.d -o CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace/test_petsc_laplace.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 69%] Built target test-multigrid-laplace make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 69%] Building CXX object tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -MF CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o.d -o CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid/test_petsc_laplace_MAST_grid.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 69%] Built target test-naulin-laplace make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 70%] Building CXX object tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restart-io && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -MF CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o.d -o CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io/test-restart-io.cxx [ 70%] Linking CXX executable test-options-netcdf cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-options-netcdf && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-options-netcdf.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o" -o test-options-netcdf -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 70%] Built target test-options-netcdf make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 70%] Building CXX object tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restarting && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o -MF CMakeFiles/test-restarting.dir/test_restarting.cxx.o.d -o CMakeFiles/test-restarting.dir/test_restarting.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting/test_restarting.cxx [ 70%] Linking CXX executable test-restart-io cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restart-io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restart-io.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o" -o test-restart-io -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 70%] Linking CXX executable test_restarting cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restarting && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restarting.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-restarting.dir/test_restarting.cxx.o" -o test_restarting -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 70%] Linking CXX executable test_petsc_laplace cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o" -o test_petsc_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 70%] Built target test-restart-io make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 72%] Building CXX object tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-smooth && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o -MF CMakeFiles/test-smooth.dir/test_smooth.cxx.o.d -o CMakeFiles/test-smooth.dir/test_smooth.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth/test_smooth.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 72%] Built target test-restarting make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-snb/CMakeFiles/test-snb.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 72%] Building CXX object tests/integrated/test-snb/CMakeFiles/test-snb.dir/test_snb.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-snb && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-snb/CMakeFiles/test-snb.dir/test_snb.cxx.o -MF CMakeFiles/test-snb.dir/test_snb.cxx.o.d -o CMakeFiles/test-snb.dir/test_snb.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb/test_snb.cxx [ 72%] Linking CXX executable test_petsc_laplace_MAST_grid cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace-MAST-grid.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o" -o test_petsc_laplace_MAST_grid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 72%] Built target test-petsc-laplace make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-solver/CMakeFiles/test-solver.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 73%] Building CXX object tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-solver && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o -MF CMakeFiles/test-solver.dir/test_solver.cxx.o.d -o CMakeFiles/test-solver.dir/test_solver.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver/test_solver.cxx [ 73%] Linking CXX executable test_smooth cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-smooth && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-smooth.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-smooth.dir/test_smooth.cxx.o" -o test_smooth -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 73%] Built target test-petsc-laplace-MAST-grid make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-squash/CMakeFiles/test-squash.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 73%] Built target test-smooth make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/build make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/DependInfo.cmake "--color=" [ 73%] Building CXX object tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-squash && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o -MF CMakeFiles/test-squash.dir/squash.cxx.o.d -o CMakeFiles/test-squash.dir/squash.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash/squash.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 73%] Building CXX object tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck/test_stopCheck.cxx [ 73%] Linking CXX executable test_snb cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-snb && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-snb.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-snb.dir/test_snb.cxx.o" -o test_snb -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 73%] Linking CXX executable squash cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-squash && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-squash.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-squash.dir/squash.cxx.o" -o squash -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 75%] Linking CXX executable test_stopCheck cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o" -o test_stopCheck -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 75%] Built target test-squash make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 75%] Building CXX object tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck-file && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file/test_stopCheck.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 75%] Built target test-stopCheck make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 75%] Building CXX object tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift/test-twistshift.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 75%] Built target test-snb make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/DependInfo.cmake "--color=" [ 75%] Linking CXX executable test_solver cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-solver && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-solver.dir/link.txt --verbose=1 make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-solver.dir/test_solver.cxx.o" -o test_solver -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 75%] Building CXX object tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift-staggered && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered/test-twistshift.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 75%] Built target test-solver make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-vec/CMakeFiles/test-vec.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 75%] Building CXX object tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-vec && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o -MF CMakeFiles/test-vec.dir/testVec.cxx.o.d -o CMakeFiles/test-vec.dir/testVec.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec/testVec.cxx [ 76%] Linking CXX executable test-twistshift cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o" -o test-twistshift -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 76%] Linking CXX executable test-twistshift cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift-staggered.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o" -o test-twistshift -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 76%] Built target test-twistshift make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 76%] Building CXX object tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -MF CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o.d -o CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown/test_yupdown.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 76%] Built target test-twistshift-staggered make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/build-check-mms-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/build-check-mms-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 76%] Built target build-check-mms-tests make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 76%] Building CXX object tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock && /usr/lib64/openmpi/bin/mpicxx -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_HAS_PTHREAD=0 -Dgmock_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wshadow -Werror -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=0 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o -MF CMakeFiles/gmock.dir/src/gmock-all.cc.o.d -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/src/gmock-all.cc [ 76%] Linking CXX executable test_stopCheck cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck-file && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck-file.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o" -o test_stopCheck -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 76%] Built target test-stopCheck-file make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 77%] Building python interface cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-312-x86_64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-312-x86_64-linux-gnu.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 77%] Built target boutpp [ 79%] Linking CXX executable testVec cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-vec && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vec.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-vec.dir/testVec.cxx.o" -o testVec -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl [ 79%] Linking CXX executable test_yupdown cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o" -o test_yupdown -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 79%] Built target test-vec [ 79%] Linking CXX shared library ../../../../../lib/libgmock.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmock.so.1.10.0 -o ../../../../../lib/libgmock.so.1.10.0 "CMakeFiles/gmock.dir/src/gmock-all.cc.o" -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../../../lib/libgtest.so.1.10.0 make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 79%] Built target test-yupdown make -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/build-check-integrated-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/build-check-integrated-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 79%] Built target build-check-integrated-tests cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 79%] Built target gmock make -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/CMakeFiles/serial_tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/bout_test_main.cxx.o [ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o [ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o [ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_field.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_field2d.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/bout_test_main.cxx.o -MF CMakeFiles/serial_tests.dir/bout_test_main.cxx.o.d -o CMakeFiles/serial_tests.dir/bout_test_main.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout_test_main.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_field3d.cxx /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout_test_main.cxx: In function ‘int main(int, char**)’: /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout_test_main.cxx:29:18: warning: unused variable ‘hyprelib’ [-Wunused-variable] 29 | bout::HypreLib hyprelib{}; | ^~~~~~~~ [ 81%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem 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CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/include/bout/test_petsc_matrix.cxx [ 86%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem 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/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/include/bout/test_petsc_setters.cxx [ 87%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/include/bout/test_petsc_vector.cxx In file included from /usr/include/c++/14/vector:62, from /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/include/bout/test_petsc_setters.cxx:3: In function ‘std::__copy_move::__copy_m(double const*, double const*, double*)double*’, inlined from ‘std::__copy_move_a2(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:507:30, inlined from ‘std::__copy_move_a1(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:534:42, inlined from ‘std::__copy_move_a(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:541:31, inlined from ‘std::copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:637:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from ‘std::__uninitialized_copy_a(double const*, double const*, double*, std::allocator&)double*’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector >::_M_assign_aux(double const*, double const*, std::forward_iterator_tag)void’ at /usr/include/c++/14/bits/vector.tcc:352:35, inlined from ‘std::vector >::operator=(std::initializer_list)’ at /usr/include/c++/14/bits/stl_vector.h:787:21, inlined from ‘PetscMatrix::Element::Element(_p_Mat**, int, int, std::vector >, std::vector >)’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/petsc_interface.hxx:399:23: /usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘memcpy’ forming offset 8 is out of the bounds [0, 8] of object ‘’ with type ‘const double[1]’ [-Warray-bounds=] 438 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/include/bout/test_petsc_setters.cxx:8: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/petsc_interface.hxx: In member function ‘PetscMatrix::Element::Element(_p_Mat**, int, int, std::vector >, std::vector >)’: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/petsc_interface.hxx:399:23: note: ‘’ declared here 399 | weights = {1.0}; | ^ [ 87%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode 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-isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_options.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_options.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_options.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_options.cxx [ 95%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_options_fields.cxx In file included from /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include/gtest/gtest.h:62, from /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/test_extras.hxx:4, from /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_options.cxx:1: /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_options.cxx: In member function ‘virtual void OptionsTest_InvalidFormat_Test::TestBody()’: /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_options.cxx:1101:27: warning: ignoring return value of ‘std::string fmt::v10::format(format_string, T&& ...) [with T = {Options}; std::string = std::__cxx11::basic_string; format_string = basic_format_string]’, declared with attribute ‘nodiscard’ [-Wunused-result] 1101 | EXPECT_THROW(fmt::format("{:nope}", Options{}), fmt::format_error); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:33, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field_data.hxx:51, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field.hxx:39, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:34, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/coordinates.hxx:36, from /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/test_extras.hxx:12: /usr/include/fmt/core.h:2833:31: note: declared here 2833 | FMT_NODISCARD FMT_INLINE auto format(format_string fmt, T&&... args) | ^~~~~~ [ 97%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o cd 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tests/unit/CMakeFiles/serial_tests.dir/test_extras.cxx.o -MF CMakeFiles/serial_tests.dir/test_extras.cxx.o.d -o CMakeFiles/serial_tests.dir/test_extras.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/test_extras.cxx [100%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem 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Linking CXX executable serial_tests cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/bin/cmake -E cmake_link_script CMakeFiles/serial_tests.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/serial_tests.dir/bout_test_main.cxx.o CMakeFiles/serial_tests.dir/field/test_field.cxx.o CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o CMakeFiles/serial_tests.dir/field/test_vector2d.cxx.o CMakeFiles/serial_tests.dir/field/test_vector3d.cxx.o CMakeFiles/serial_tests.dir/field/test_where.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_array.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_assert.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_bout_enum_class.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_deriv_store.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_generic_factory.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_macro_for_each.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_monitor.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_indexer.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_stencil.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o CMakeFiles/serial_tests.dir/include/test_cyclic_reduction.cxx.o CMakeFiles/serial_tests.dir/include/test_derivs.cxx.o CMakeFiles/serial_tests.dir/include/test_mask.cxx.o CMakeFiles/serial_tests.dir/invert/test_fft.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_petsc3damg.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o CMakeFiles/serial_tests.dir/mesh/parallel/test_shiftedmetric.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boundary_factory.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boutmesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates_accessor.cxx.o CMakeFiles/serial_tests.dir/mesh/test_interpolation.cxx.o CMakeFiles/serial_tests.dir/mesh/test_mesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_paralleltransform.cxx.o CMakeFiles/serial_tests.dir/solver/test_fakesolver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solverfactory.cxx.o CMakeFiles/serial_tests.dir/sys/test_boutexception.cxx.o CMakeFiles/serial_tests.dir/sys/test_expressionparser.cxx.o CMakeFiles/serial_tests.dir/sys/test_msg_stack.cxx.o CMakeFiles/serial_tests.dir/sys/test_options.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o CMakeFiles/serial_tests.dir/sys/test_optionsreader.cxx.o CMakeFiles/serial_tests.dir/sys/test_output.cxx.o CMakeFiles/serial_tests.dir/sys/test_range.cxx.o CMakeFiles/serial_tests.dir/sys/test_timer.cxx.o CMakeFiles/serial_tests.dir/sys/test_type_name.cxx.o CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o CMakeFiles/serial_tests.dir/sys/test_variant.cxx.o CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o CMakeFiles/serial_tests.dir/test_extras.cxx.o CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o -o serial_tests -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../lib/libgmock.so.1.10.0 ../../lib/libbout++.so.5.1.0 ../../lib/libgtest.so.1.10.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../lib/libpvode.so.1.0.0 ../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.2 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.2 -ldl /usr/bin/ld: /tmp/ccjgwBsP.ltrans104.ltrans.o: in function `testing::internal::TestFactoryImpl::CreateTest()': /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_options_netcdf.cxx:28:(.text+0xd25): warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [100%] Built target serial_tests make -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 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-S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check-unit-tests make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 47 make -f CMakeFiles/Makefile2 CMakeFiles/check-unit-tests.dir/all make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 2%] Built target gtest make -f 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Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 4%] Built target pvpre make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 8%] Built target pvode make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 68%] Built target bout++ make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 68%] Built target gmock make -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit 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/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/build-check-unit-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/build-check-unit-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [100%] Built target build-check-unit-tests make -f CMakeFiles/check-unit-tests.dir/build.make CMakeFiles/check-unit-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/check-unit-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/check-unit-tests.dir/build.make CMakeFiles/check-unit-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' ctest -R serial_tests --output-on-failure Test project /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi Start 1: serial_tests 1/1 Test #1: serial_tests ..................... Passed 5.30 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 5.33 sec make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [100%] Built target check-unit-tests make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' + SEGFAULT_SIGNALS=segv + make check-mms-tests /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check-mms-tests make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 33 make -f CMakeFiles/Makefile2 CMakeFiles/check-mms-tests.dir/all make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 3%] Built target pvpre make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 9%] Built target pvode make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 93%] Built target bout++ make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 96%] Built target MMS-wave-1d-y make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection/CMakeFiles/MMS-advection.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/MMS/advection/CMakeFiles/MMS-advection.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 96%] Built target MMS-advection make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 96%] Built target MMS-diffusion make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [100%] Built target MMS-spatial-fci make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [100%] Built target MMS-wave-1d make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/build-check-mms-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/build-check-mms-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [100%] Built target build-check-mms-tests make -f CMakeFiles/check-mms-tests.dir/build.make CMakeFiles/check-mms-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/check-mms-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/check-mms-tests.dir/build.make CMakeFiles/check-mms-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' ctest -R MMS- --output-on-failure Test project /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi Start 52: MMS-diffusion 1/8 Test #52: MMS-diffusion .................... Passed 11.35 sec Start 53: MMS-spatial-fci 2/8 Test #53: MMS-spatial-fci .................. Passed 16.39 sec Start 54: MMS-wave-1d 3/8 Test #54: MMS-wave-1d ...................... Passed 10.02 sec Start 55: MMS-wave-1d-y 4/8 Test #55: MMS-wave-1d-y .................... Passed 10.07 sec Start 56: MMS-bracket 5/8 Test #56: MMS-bracket ...................... Passed 1.45 sec Start 57: MMS-derivatives3 6/8 Test #57: MMS-derivatives3 ................. Passed 1.67 sec Start 58: MMS-shiftedmetricinterp 7/8 Test #58: MMS-shiftedmetricinterp .......... Passed 4.35 sec Start 59: MMS-upwinding3 8/8 Test #59: MMS-upwinding3 ................... Passed 1.86 sec 100% tests passed, 0 tests failed out of 8 Total Test time (real) = 57.17 sec make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target check-mms-tests make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' + SEGFAULT_SIGNALS=segv + make check-integrated-tests /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check-integrated-tests make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 54 make -f CMakeFiles/Makefile2 CMakeFiles/check-integrated-tests.dir/all make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 1%] Built target pvpre make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 5%] Built target pvode make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 57%] Built target bout++ make -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 59%] Built target test-yupdown-weights make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 62%] Built target boutpp.cpython-312-x86_64-linux-gnu make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 64%] Building python interface cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-312-x86_64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-312-x86_64-linux-gnu.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 64%] Built target boutpp make -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 64%] Built target test-backtrace make -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 64%] Built target test_beuler make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 64%] Built target test-bout-override-default-option make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 66%] Built target test-command-args make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-communications/CMakeFiles/test-communications.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-communications/CMakeFiles/test-communications.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 66%] Built target test-communications make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 68%] Built target test-coordinates-initialization make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 68%] Built target test-cyclic make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 68%] Built target test-delp2 make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 70%] Built target test-datafile-facade make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 70%] Built target test-drift-instability make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 72%] Built target test-drift-instability-staggered make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 72%] Built target test-fieldgroupComm make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 74%] Built target test-griddata make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 74%] Built target test-griddata-yboundary-guards make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 75%] Built target test-gyro make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-initial/CMakeFiles/test-initial.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-initial/CMakeFiles/test-initial.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 75%] Built target test-initial make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 77%] Built target test-interchange-instability make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 77%] Built target test-interpolate make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 79%] Built target test-interpolate-z make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 79%] Built target test-invertable-operator make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 81%] Built target test-invpar make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 81%] Built target test-laplace make -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 83%] Built target test-laplace-petsc3d make -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 83%] Built target test-laplacexy-fv make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 83%] Built target test-laplacexy-short make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 85%] Built target test-laplacexz make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 85%] Built target test-multigrid-laplace make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 87%] Built target test-naulin-laplace make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 87%] Built target test-options-netcdf make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 88%] Built target test-petsc-laplace make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 88%] Built target test-petsc-laplace-MAST-grid make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 90%] Built target test-restart-io make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 90%] Built target test-restarting make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 92%] Built target test-smooth make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-snb/CMakeFiles/test-snb.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-snb/CMakeFiles/test-snb.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 92%] Built target test-snb make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-solver/CMakeFiles/test-solver.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-solver/CMakeFiles/test-solver.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 94%] Built target test-solver make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-squash/CMakeFiles/test-squash.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-squash/CMakeFiles/test-squash.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 94%] Built target test-squash make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 96%] Built target test-stopCheck make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 96%] Built target test-stopCheck-file make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 98%] Built target test-twistshift make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 98%] Built target test-twistshift-staggered make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-vec/CMakeFiles/test-vec.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-vec/CMakeFiles/test-vec.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [100%] Built target test-vec make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [100%] Built target test-yupdown make -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/build-check-integrated-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/build-check-integrated-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [100%] Built target build-check-integrated-tests make -f CMakeFiles/check-integrated-tests.dir/build.make CMakeFiles/check-integrated-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/check-integrated-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/check-integrated-tests.dir/build.make CMakeFiles/check-integrated-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' ctest -R test- --output-on-failure Test project /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi Start 2: test-backtrace 1/49 Test #2: test-backtrace ...................... Passed 0.82 sec Start 4: test-boutpp-collect 2/49 Test #4: test-boutpp-collect ................. Passed 0.51 sec Start 5: test-boutpp-collect-staggered 3/49 Test #5: test-boutpp-collect-staggered ....... Passed 1.51 sec Start 6: test-boutpp-legacy-model 4/49 Test #6: test-boutpp-legacy-model ............ Passed 1.61 sec Start 7: test-boutpp-mms-ddz 5/49 Test #7: test-boutpp-mms-ddz ................. Passed 0.43 sec Start 8: test-boutpp-print 6/49 Test #8: test-boutpp-print ................... Passed 1.43 sec Start 9: test-boutpp-simple-model 7/49 Test #9: test-boutpp-simple-model ............ Passed 0.62 sec Start 10: test-bout-override-default-option 8/49 Test #10: test-bout-override-default-option ... Passed 0.24 sec Start 11: test-command-args 9/49 Test #11: test-command-args ................... Passed 16.66 sec Start 12: test-communications 10/49 Test #12: test-communications ................. Passed 10.39 sec Start 13: test-coordinates-initialization 11/49 Test #13: test-coordinates-initialization ..... Passed 1.55 sec Start 14: test-cyclic 12/49 Test #14: test-cyclic ......................... Passed 17.54 sec Start 15: test-delp2 13/49 Test #15: test-delp2 .......................... Passed 20.59 sec Start 16: test-datafile-facade 14/49 Test #16: test-datafile-facade ................ Passed 4.13 sec Start 17: test-drift-instability 15/49 Test #17: test-drift-instability .............. Passed 5.41 sec Start 18: test-drift-instability-staggered 16/49 Test #18: test-drift-instability-staggered .... Passed 5.52 sec Start 19: test-fieldgroupComm 17/49 Test #19: test-fieldgroupComm ................. Passed 5.27 sec Start 20: test-griddata 18/49 Test #20: test-griddata ....................... Passed 1.90 sec Start 21: test-griddata-yboundary-guards 19/49 Test #21: test-griddata-yboundary-guards ...... Passed 10.00 sec Start 22: test-gyro 20/49 Test #22: test-gyro ........................... Passed 4.88 sec Start 23: test-initial 21/49 Test #23: test-initial ........................ Passed 10.61 sec Start 24: test-interchange-instability 22/49 Test #24: test-interchange-instability ........ Passed 9.28 sec Start 25: test-interpolate 23/49 Test #25: test-interpolate .................... Passed 18.28 sec Start 26: test-interpolate-z 24/49 Test #26: test-interpolate-z .................. Passed 6.41 sec Start 27: test-invertable-operator 25/49 Test #27: test-invertable-operator ............ Passed 3.43 sec Start 28: test-invpar 26/49 Test #28: test-invpar ......................... Passed 9.03 sec Start 29: test-laplace 27/49 Test #29: test-laplace ........................ Passed 17.15 sec Start 30: test-laplace-petsc3d 28/49 Test #30: test-laplace-petsc3d ................ Passed 11.09 sec Start 31: test-laplacexy-fv 29/49 Test #31: test-laplacexy-fv ................... Passed 9.98 sec Start 32: test-laplacexy-short 30/49 Test #32: test-laplacexy-short ................ Passed 17.71 sec Start 33: test-laplacexz 31/49 Test #33: test-laplacexz ...................... Passed 4.93 sec Start 34: test-multigrid-laplace 32/49 Test #34: test-multigrid-laplace .............. Passed 4.69 sec Start 35: test-naulin-laplace 33/49 Test #35: test-naulin-laplace ................. Passed 3.60 sec Start 36: test-options-netcdf 34/49 Test #36: test-options-netcdf ................. Passed 1.90 sec Start 37: test-petsc-laplace 35/49 Test #37: test-petsc-laplace .................. Passed 6.16 sec Start 38: test-petsc-laplace-MAST-grid 36/49 Test #38: test-petsc-laplace-MAST-grid ........ Passed 27.33 sec Start 39: test-restart-io 37/49 Test #39: test-restart-io ..................... Passed 6.07 sec Start 40: test-restarting 38/49 Test #40: test-restarting ..................... Passed 8.12 sec Start 41: test-smooth 39/49 Test #41: test-smooth ......................... Passed 6.42 sec Start 42: test-snb 40/49 Test #42: test-snb ............................ Passed 1.35 sec Start 43: test-solver 41/49 Test #43: test-solver ......................... Passed 2.76 sec Start 44: test-squash 42/49 Test #44: test-squash ......................... Passed 15.28 sec Start 45: test-stopCheck 43/49 Test #45: test-stopCheck ...................... Passed 0.37 sec Start 46: test-stopCheck-file 44/49 Test #46: test-stopCheck-file ................. Passed 5.50 sec Start 47: test-twistshift 45/49 Test #47: test-twistshift ..................... Passed 1.95 sec Start 48: test-twistshift-staggered 46/49 Test #48: test-twistshift-staggered ........... Passed 1.95 sec Start 49: test-vec 47/49 Test #49: test-vec ............................ Passed 1.74 sec Start 50: test-yupdown 48/49 Test #50: test-yupdown ........................ Passed 3.39 sec Start 51: test-yupdown-weights 49/49 Test #51: test-yupdown-weights ................ Passed 1.94 sec 100% tests passed, 0 tests failed out of 49 Total Test time (real) = 329.50 sec make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target check-integrated-tests make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' + popd ~/build/BUILD/BOUT++-v5.1.0 + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/openmpi/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval 'unset MPI_COMPILER; unset LD_LIBRARY_PATH; unset MPI_MAN; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset _LMFILES_; unset LOADEDMODULES; unset CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in openmpi mpich + fail=1 + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ LOADEDMODULES= ++++ export LOADEDMODULES ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_; LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; test 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ~/build/BUILD/BOUT++-v5.1.0/build_mpich ~/build/BUILD/BOUT++-v5.1.0 ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + pushd build_mpich + export OMPI_MCA_rmaps_base_oversubscribe=yes + OMPI_MCA_rmaps_base_oversubscribe=yes + export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + export HDF5_USE_FILE_LOCKING=FALSE + HDF5_USE_FILE_LOCKING=FALSE + sed 's/ 3s / 30s /' tests/integrated/test-coordinates-initialization/runtest #!/bin/bash # Cores: 3 make || exit test -z $MPIRUN && MPIRUN='mpirun -np' # Kill the test after 3 seconds, if it hasn't already exited OMP_NUM_THREADS=1 $MPIRUN 3 timeout 30s ./test-coordinates-initialization e=$? if test $e -ne 0 then echo "The test failed. That can be caused by a timeout." echo "If this test is run on high load, it may fail occasionally." echo "The load is:" uptime fi exit $e + make -j4 build-check /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 build-check make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles 72 make -f CMakeFiles/Makefile2 CMakeFiles/build-check.dir/all make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 1%] Built target pvpre [ 1%] Building CXX object tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o [ 4%] Built target pvode cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googletest && /usr/lib64/mpich/bin/mpicxx -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_HAS_PTHREAD=0 -Dgtest_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wshadow -Werror -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=0 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/src/gtest-all.cc make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/bout++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 43%] Built target bout++ make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/depend make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/depend make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/advection/CMakeFiles/MMS-advection.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/build make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 43%] Building CXX object tests/MMS/advection/CMakeFiles/MMS-advection.dir/advection.cxx.o [ 44%] Building CXX object tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o [ 44%] Building CXX object tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/diffusion && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o -MF CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o.d -o CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion/diffusion.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/advection && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/advection/CMakeFiles/MMS-advection.dir/advection.cxx.o -MF CMakeFiles/MMS-advection.dir/advection.cxx.o.d -o CMakeFiles/MMS-advection.dir/advection.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/advection/advection.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d-y && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o -MF CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o.d -o CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y/wave.cxx [ 44%] Linking CXX executable wave cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d-y && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d-y.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o" -o wave -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 44%] Linking CXX executable cyto cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/diffusion && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-diffusion.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o" -o cyto -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 44%] Built target MMS-wave-1d-y make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 45%] Building CXX object tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/spatial/fci && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o -MF CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o.d -o CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci/fci_mms.cxx [ 45%] Linking CXX executable advection cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/advection && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-advection.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-advection.dir/advection.cxx.o" -o advection -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 45%] Built target MMS-diffusion make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 45%] Building CXX object tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/wave.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/wave.cxx.o -MF CMakeFiles/MMS-wave-1d.dir/wave.cxx.o.d -o CMakeFiles/MMS-wave-1d.dir/wave.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d/wave.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 45%] Built target MMS-advection make -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 45%] Building CXX object tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown-weights && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -MF CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o.d -o CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights/test_yupdown_weights.cxx [ 45%] Linking CXX executable fci_mms cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/spatial/fci && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-spatial-fci.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o" -o fci_mms -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../../lib/libpvode.so.1.0.0 ../../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 47%] Linking CXX executable test_yupdown_weights cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown-weights && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown-weights.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o" -o test_yupdown_weights -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 47%] Built target test-yupdown-weights make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 50%] Built target boutpp.cpython-312-x86_64-linux-gnu make -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 50%] Building CXX object tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-backtrace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -MF CMakeFiles/test-backtrace.dir/boutexcept.cxx.o.d -o CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace/boutexcept.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 50%] Built target MMS-spatial-fci make -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 50%] Building CXX object tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-beuler && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o -MF CMakeFiles/test_beuler.dir/test_beuler.cxx.o.d -o CMakeFiles/test_beuler.dir/test_beuler.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler/test_beuler.cxx [ 50%] Linking CXX executable boutexcept cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-backtrace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-backtrace.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-backtrace.dir/boutexcept.cxx.o" -o boutexcept -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 50%] Linking CXX executable wave cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-wave-1d.dir/wave.cxx.o" -o wave -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 50%] Built target test-backtrace make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 50%] Building CXX object tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-bout-override-default-option && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -MF CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o.d -o CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option/test-bout-override-default-option.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 50%] Built target MMS-wave-1d make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 51%] Building CXX object tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-command-args && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o -MF CMakeFiles/test-command-args.dir/command-args.cxx.o.d -o CMakeFiles/test-command-args.dir/command-args.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args/command-args.cxx [ 52%] Linking CXX shared library ../../../../../lib/libgtest.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgtest.so.1.10.0 -o ../../../../../lib/libgtest.so.1.10.0 "CMakeFiles/gtest.dir/src/gtest-all.cc.o" [ 52%] Linking CXX executable command-args cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-command-args && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-command-args.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-command-args.dir/command-args.cxx.o" -o command-args -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 52%] Linking CXX executable test_beuler cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-beuler && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_beuler.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_beuler.dir/test_beuler.cxx.o -o test_beuler -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 52%] Built target test-command-args make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-communications/CMakeFiles/test-communications.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 52%] Building CXX object tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-communications && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o -MF CMakeFiles/test-communications.dir/test-communications.cxx.o.d -o CMakeFiles/test-communications.dir/test-communications.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications/test-communications.cxx [ 52%] Linking CXX executable test-bout-override-default-option cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-bout-override-default-option && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-bout-override-default-option.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o" -o test-bout-override-default-option -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 52%] Built target test_beuler make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 54%] Building CXX object tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-coordinates-initialization && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -MF CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o.d -o CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization/test-coordinates-initialization.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 54%] Built target test-bout-override-default-option make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 54%] Building CXX object tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-cyclic && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -MF CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o.d -o CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic/test_cyclic.cxx [ 54%] Linking CXX executable test-communications cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-communications && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-communications.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-communications.dir/test-communications.cxx.o" -o test-communications -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 54%] Linking CXX executable test-coordinates-initialization cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-coordinates-initialization && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-coordinates-initialization.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o" -o test-coordinates-initialization -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 54%] Built target test-coordinates-initialization make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 54%] Building CXX object tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-delp2 && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o -MF CMakeFiles/test-delp2.dir/test_delp2.cxx.o.d -o CMakeFiles/test-delp2.dir/test_delp2.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2/test_delp2.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 54%] Built target test-communications make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 55%] Building CXX object tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-datafilefacade && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -MF CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o.d -o CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade/test-datafile-facade.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googletest && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgtest.so.1.10.0 ../../../../../lib/libgtest.so.1.10.0 ../../../../../lib/libgtest.so make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 55%] Built target gtest make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 55%] Building CXX object tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability/2fluid.cxx [ 55%] Linking CXX executable test_cyclic cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-cyclic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-cyclic.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o" -o test_cyclic -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 55%] Linking CXX executable test-datafile-facade cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-datafilefacade && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-datafile-facade.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o" -o test-datafile-facade -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 55%] Linking CXX executable test_delp2 cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-delp2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-delp2.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-delp2.dir/test_delp2.cxx.o" -o test_delp2 -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 55%] Built target test-datafile-facade make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 56%] Building CXX object tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability-staggered && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered/2fluid.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 56%] Built target test-cyclic make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 56%] Building CXX object tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-fieldgroupComm && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -MF CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o.d -o CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm/test_fieldgroupcomm.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 56%] Built target test-delp2 make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Building CXX object tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata.dir/test_griddata.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata/test_griddata.cxx [ 58%] Linking CXX executable test_fieldgroupcomm cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-fieldgroupComm && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fieldgroupComm.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o" -o test_fieldgroupcomm -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 58%] Linking CXX executable 2fluid cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-drift-instability.dir/2fluid.cxx.o" -o 2fluid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Built target test-fieldgroupComm make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Building CXX object tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata-yboundary-guards && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards/test_griddata.cxx [ 58%] Linking CXX executable test_griddata cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-griddata.dir/test_griddata.cxx.o" -o test_griddata -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Built target test-griddata make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Building CXX object tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-gyro && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o -MF CMakeFiles/test-gyro.dir/test_gyro.cxx.o.d -o CMakeFiles/test-gyro.dir/test_gyro.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro/test_gyro.cxx [ 58%] Linking CXX executable 2fluid cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability-staggered.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o" -o 2fluid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 58%] Linking CXX executable test_griddata cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata-yboundary-guards && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata-yboundary-guards.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o" -o test_griddata -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Built target test-drift-instability make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-initial/CMakeFiles/test-initial.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Building CXX object tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-initial && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o -MF CMakeFiles/test-initial.dir/test_initial.cxx.o.d -o CMakeFiles/test-initial.dir/test_initial.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial/test_initial.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Built target test-griddata-yboundary-guards make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Building CXX object tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interchange-instability && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability/2fluid.cxx [ 59%] Linking CXX executable test_gyro cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-gyro && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-gyro.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-gyro.dir/test_gyro.cxx.o" -o test_gyro -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 59%] Built target test-gyro make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 59%] Building CXX object tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate/test_interpolate.cxx [ 59%] Linking CXX executable test_initial cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-initial && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-initial.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-initial.dir/test_initial.cxx.o" -o test_initial -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 59%] Built target test-drift-instability-staggered make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 59%] Building CXX object tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate-z && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z/test_interpolate.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 59%] Built target test-initial make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 59%] Building CXX object tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invertable-operator && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -MF CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o.d -o CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator/invertable_operator.cxx In file included from /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator/invertable_operator.cxx:4: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx: In instantiation of ‘PetscErrorCode bout::inversion::InvertableOperator::setup() [with T = Field3D; PetscErrorCode = int]’: /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator/invertable_operator.cxx:51:19: required from here 51 | mySolver.setup(); | ~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 222 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~~^~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:44: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 222 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 222 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 222 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:225:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 225 | if (localmesh->firstY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:225:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 225 | if (localmesh->firstY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:231:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 231 | if (localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:231:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 231 | if (localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 262 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 262 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 262 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 262 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:265:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 265 | if (localmesh->firstY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:265:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 265 | if (localmesh->firstY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:270:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 270 | if (localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:270:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 270 | if (localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ [ 61%] Linking CXX executable 2fluid cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interchange-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interchange-instability.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o" -o 2fluid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 61%] Linking CXX executable test_interpolate cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o" -o test_interpolate -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 62%] Linking CXX executable test_interpolate cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate-z && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate-z.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o" -o test_interpolate -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 62%] Built target test-interpolate make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 62%] Building CXX object tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invpar && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o -MF CMakeFiles/test-invpar.dir/test_invpar.cxx.o.d -o CMakeFiles/test-invpar.dir/test_invpar.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar/test_invpar.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 62%] Built target test-interchange-instability make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 62%] Building CXX object tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o -MF CMakeFiles/test-laplace.dir/test_laplace.cxx.o.d -o CMakeFiles/test-laplace.dir/test_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace/test_laplace.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 62%] Built target test-interpolate-z make -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 62%] Building CXX object tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace-petsc3d && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -MF CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o.d -o CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d/test-laplace3d.cxx [ 62%] Linking CXX executable invertable_operator cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invertable-operator && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invertable-operator.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o" -o invertable_operator -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 62%] Built target test-invertable-operator make -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 62%] Building CXX object tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-fv && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv/test-laplacexy.cxx [ 62%] Linking CXX executable test_laplace cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplace.dir/test_laplace.cxx.o" -o test_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 63%] Linking CXX executable test_invpar cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invpar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invpar.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-invpar.dir/test_invpar.cxx.o" -o test_invpar -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 65%] Linking CXX executable test-laplace3d cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace-petsc3d && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace-petsc3d.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o" -o test-laplace3d -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 65%] Built target test-laplace make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 65%] Building CXX object tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-short && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short/test-laplacexy.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 65%] Built target test-invpar make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 66%] Building CXX object tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexz && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -MF CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o.d -o CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz/test-laplacexz.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 66%] Built target test-laplace-petsc3d make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 66%] Building CXX object tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-multigrid_laplace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -MF CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o.d -o CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace/test_multigrid_laplace.cxx [ 66%] Linking CXX executable test-laplacexy cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-fv && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-fv.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o" -o test-laplacexy -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 66%] Built target test-laplacexy-fv make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 68%] Building CXX object tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-naulin-laplace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -MF CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o.d -o CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace/test_naulin_laplace.cxx [ 68%] Linking CXX executable test-laplacexy cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-short && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-short.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o" -o test-laplacexy -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 68%] Built target test-laplacexy-short make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 68%] Building CXX object tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-options-netcdf && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -MF CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o.d -o CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf/test-options-netcdf.cxx [ 68%] Linking CXX executable test-laplacexz cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexz && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexz.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o" -o test-laplacexz -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 68%] Linking CXX executable test_multigrid_laplace cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-multigrid_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-multigrid-laplace.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o" -o test_multigrid_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 68%] Built target test-laplacexz make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 69%] Building CXX object tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -MF CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o.d -o CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace/test_petsc_laplace.cxx [ 69%] Linking CXX executable test_naulin_laplace cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-naulin-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-naulin-laplace.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o" -o test_naulin_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 69%] Built target test-multigrid-laplace make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 69%] Building CXX object tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -MF CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o.d -o CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid/test_petsc_laplace_MAST_grid.cxx [ 69%] Linking CXX executable test-options-netcdf cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-options-netcdf && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-options-netcdf.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o" -o test-options-netcdf -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 69%] Built target test-naulin-laplace make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 70%] Building CXX object tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restart-io && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -MF CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o.d -o CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io/test-restart-io.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 70%] Built target test-options-netcdf make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 70%] Building CXX object tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restarting && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o -MF CMakeFiles/test-restarting.dir/test_restarting.cxx.o.d -o CMakeFiles/test-restarting.dir/test_restarting.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting/test_restarting.cxx [ 70%] Linking CXX executable test-restart-io cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restart-io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restart-io.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o" -o test-restart-io -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 70%] Linking CXX executable test_restarting cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restarting && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restarting.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-restarting.dir/test_restarting.cxx.o" -o test_restarting -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 70%] Linking CXX executable test_petsc_laplace cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o" -o test_petsc_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 70%] Built target test-restarting make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 72%] Building CXX object tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-smooth && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o -MF CMakeFiles/test-smooth.dir/test_smooth.cxx.o.d -o CMakeFiles/test-smooth.dir/test_smooth.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth/test_smooth.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 72%] Built target test-restart-io make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-snb/CMakeFiles/test-snb.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 72%] Building CXX object tests/integrated/test-snb/CMakeFiles/test-snb.dir/test_snb.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-snb && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-snb/CMakeFiles/test-snb.dir/test_snb.cxx.o -MF CMakeFiles/test-snb.dir/test_snb.cxx.o.d -o CMakeFiles/test-snb.dir/test_snb.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb/test_snb.cxx [ 72%] Linking CXX executable test_petsc_laplace_MAST_grid cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace-MAST-grid.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o" -o test_petsc_laplace_MAST_grid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 72%] Built target test-petsc-laplace make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-solver/CMakeFiles/test-solver.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 73%] Building CXX object tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-solver && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o -MF CMakeFiles/test-solver.dir/test_solver.cxx.o.d -o CMakeFiles/test-solver.dir/test_solver.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver/test_solver.cxx [ 73%] Linking CXX executable test_smooth cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-smooth && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-smooth.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-smooth.dir/test_smooth.cxx.o" -o test_smooth -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 73%] Built target test-petsc-laplace-MAST-grid make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-squash/CMakeFiles/test-squash.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 73%] Building CXX object tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-squash && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o -MF CMakeFiles/test-squash.dir/squash.cxx.o.d -o CMakeFiles/test-squash.dir/squash.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash/squash.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 73%] Built target test-smooth make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 73%] Building CXX object tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck/test_stopCheck.cxx [ 73%] Linking CXX executable test_snb cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-snb && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-snb.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-snb.dir/test_snb.cxx.o" -o test_snb -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 73%] Linking CXX executable squash cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-squash && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-squash.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-squash.dir/squash.cxx.o" -o squash -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 75%] Linking CXX executable test_stopCheck cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o" -o test_stopCheck -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 75%] Linking CXX executable test_solver cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-solver && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-solver.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-solver.dir/test_solver.cxx.o" -o test_solver -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Built target test-squash make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Building CXX object tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck-file && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file/test_stopCheck.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Built target test-stopCheck make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Building CXX object tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift/test-twistshift.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Built target test-snb make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Building CXX object tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift-staggered && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered/test-twistshift.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Built target test-solver make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-vec/CMakeFiles/test-vec.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Building CXX object tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-vec && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o -MF CMakeFiles/test-vec.dir/testVec.cxx.o.d -o CMakeFiles/test-vec.dir/testVec.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec/testVec.cxx [ 76%] Linking CXX executable test-twistshift cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o" -o test-twistshift -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl [ 76%] Linking CXX executable test-twistshift cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift-staggered.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o" -o test-twistshift -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 76%] Built target test-twistshift make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 76%] Building CXX object tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -MF CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o.d -o CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown/test_yupdown.cxx [ 76%] Linking CXX executable test_stopCheck cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck-file && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck-file.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o" -o test_stopCheck -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 76%] Built target test-twistshift-staggered make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/build-check-mms-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/build-check-mms-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 76%] Built target build-check-mms-tests make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 76%] Building CXX object tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googlemock && /usr/lib64/mpich/bin/mpicxx -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_HAS_PTHREAD=0 -Dgmock_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wshadow -Werror -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=0 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o -MF CMakeFiles/gmock.dir/src/gmock-all.cc.o.d -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/src/gmock-all.cc make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 76%] Built target test-stopCheck-file make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 77%] Building python interface cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpython-312-x86_64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-312-x86_64-linux-gnu.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/../boutpp/__init__.py make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 77%] Built target boutpp [ 79%] Linking CXX executable testVec cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-vec && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vec.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-vec.dir/testVec.cxx.o" -o testVec -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 79%] Built target test-vec [ 79%] Linking CXX executable test_yupdown cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o" -o test_yupdown -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 79%] Built target test-yupdown make -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/build-check-integrated-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/build-check-integrated-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 79%] Built target build-check-integrated-tests [ 79%] Linking CXX shared library ../../../../../lib/libgmock.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmock.so.1.10.0 -o ../../../../../lib/libgmock.so.1.10.0 "CMakeFiles/gmock.dir/src/gmock-all.cc.o" -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../../../lib/libgtest.so.1.10.0 cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 79%] Built target gmock make -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/CMakeFiles/serial_tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/bout_test_main.cxx.o [ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field.cxx.o [ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o [ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_field3d.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_field.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode 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CMakeFiles/serial_tests.dir/bout_test_main.cxx.o.d -o CMakeFiles/serial_tests.dir/bout_test_main.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout_test_main.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem 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‘int main(int, char**)’: /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout_test_main.cxx:29:18: warning: unused variable ‘hyprelib’ [-Wunused-variable] 29 | bout::HypreLib hyprelib{}; | ^~~~~~~~ [ 81%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem 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/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_field_factory.cxx [ 81%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem 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tests/unit/CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock 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object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem 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/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/include/bout/test_petsc_setters.cxx [ 87%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/include/bout/test_petsc_vector.cxx In file included from /usr/include/c++/14/vector:62, from /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/include/bout/test_petsc_setters.cxx:3: In function ‘std::__copy_move::__copy_m(double const*, double const*, double*)double*’, inlined from ‘std::__copy_move_a2(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:507:30, inlined from ‘std::__copy_move_a1(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:534:42, inlined from ‘std::__copy_move_a(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:541:31, inlined from ‘std::copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_algobase.h:637:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(double const*, double const*, double*)double*’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from ‘std::__uninitialized_copy_a(double const*, double const*, double*, std::allocator&)double*’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector >::_M_assign_aux(double const*, double const*, std::forward_iterator_tag)void’ at /usr/include/c++/14/bits/vector.tcc:352:35, inlined from ‘std::vector >::operator=(std::initializer_list)’ at /usr/include/c++/14/bits/stl_vector.h:787:21, inlined from ‘PetscMatrix::Element::Element(_p_Mat**, int, int, std::vector >, std::vector >)’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/petsc_interface.hxx:399:23: /usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘memcpy’ forming offset 8 is out of the bounds [0, 8] of object ‘’ with type ‘const double[1]’ [-Warray-bounds=] 438 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/include/bout/test_petsc_setters.cxx:8: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/petsc_interface.hxx: In member function ‘PetscMatrix::Element::Element(_p_Mat**, int, int, std::vector >, std::vector >)’: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/petsc_interface.hxx:399:23: note: ‘’ declared here 399 | weights = {1.0}; | ^ [ 87%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/include/bout/test_region.cxx [ 87%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/include/bout/test_single_index_ops.cxx [ 87%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_stencil.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_stencil.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_stencil.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_stencil.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/include/bout/test_stencil.cxx [ 88%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/include/bout/test_template_combinations.cxx [ 88%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/include/bout/test_traits.cxx [ 88%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/test_cyclic_reduction.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem 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tests/unit/CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o -MF CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o.d -o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/invert/laplace/test_laplace_cyclic.cxx [ 90%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include 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tests/unit/CMakeFiles/serial_tests.dir/sys/test_options.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_options.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_options.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_options.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_options.cxx In file included from /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include/gtest/gtest.h:62, from /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/test_extras.hxx:4, from /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_options.cxx:1: /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_options.cxx: In member function ‘virtual void OptionsTest_InvalidFormat_Test::TestBody()’: /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_options.cxx:1101:27: warning: ignoring return value of ‘std::string fmt::v10::format(format_string, T&& ...) [with T = {Options}; std::string = std::__cxx11::basic_string; format_string = basic_format_string]’, declared with attribute ‘nodiscard’ [-Wunused-result] 1101 | EXPECT_THROW(fmt::format("{:nope}", Options{}), fmt::format_error); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:33, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field_data.hxx:51, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field.hxx:39, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:34, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/coordinates.hxx:36, from /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/test_extras.hxx:12: /usr/include/fmt/core.h:2833:31: note: declared here 2833 | FMT_NODISCARD FMT_INLINE auto format(format_string fmt, T&&... args) | ^~~~~~ [ 95%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_utils.cxx [ 98%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_variant.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include 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tests/unit/CMakeFiles/serial_tests.dir/sys/test_variant.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_variant.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_variant.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_variant.cxx [ 98%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_raja.cxx /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_raja.cxx:96:7: warning: multi-line comment [-Wcomment] 96 | #if 0 // disable temporarily until reconcile iteration space for parallel_forall under \ | ^ [100%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/test_extras.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem 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object tests/unit/CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o -MF CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o.d -o CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/src/test_bout++.cxx [100%] Linking CXX executable serial_tests cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/bin/cmake -E cmake_link_script CMakeFiles/serial_tests.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects 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CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o CMakeFiles/serial_tests.dir/field/test_vector2d.cxx.o CMakeFiles/serial_tests.dir/field/test_vector3d.cxx.o CMakeFiles/serial_tests.dir/field/test_where.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_array.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_assert.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_bout_enum_class.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_deriv_store.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_generic_factory.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_macro_for_each.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_monitor.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_indexer.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_stencil.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o CMakeFiles/serial_tests.dir/include/test_cyclic_reduction.cxx.o CMakeFiles/serial_tests.dir/include/test_derivs.cxx.o CMakeFiles/serial_tests.dir/include/test_mask.cxx.o CMakeFiles/serial_tests.dir/invert/test_fft.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_petsc3damg.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o CMakeFiles/serial_tests.dir/mesh/parallel/test_shiftedmetric.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boundary_factory.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boutmesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates_accessor.cxx.o CMakeFiles/serial_tests.dir/mesh/test_interpolation.cxx.o CMakeFiles/serial_tests.dir/mesh/test_mesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_paralleltransform.cxx.o CMakeFiles/serial_tests.dir/solver/test_fakesolver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solverfactory.cxx.o CMakeFiles/serial_tests.dir/sys/test_boutexception.cxx.o CMakeFiles/serial_tests.dir/sys/test_expressionparser.cxx.o CMakeFiles/serial_tests.dir/sys/test_msg_stack.cxx.o CMakeFiles/serial_tests.dir/sys/test_options.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o CMakeFiles/serial_tests.dir/sys/test_optionsreader.cxx.o CMakeFiles/serial_tests.dir/sys/test_output.cxx.o CMakeFiles/serial_tests.dir/sys/test_range.cxx.o CMakeFiles/serial_tests.dir/sys/test_timer.cxx.o CMakeFiles/serial_tests.dir/sys/test_type_name.cxx.o CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o CMakeFiles/serial_tests.dir/sys/test_variant.cxx.o CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o CMakeFiles/serial_tests.dir/test_extras.cxx.o CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o -o serial_tests -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../lib/libgmock.so.1.10.0 ../../lib/libbout++.so.5.1.0 ../../lib/libgtest.so.1.10.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../lib/libpvode.so.1.0.0 ../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.2 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.2 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.2 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.2 -ldl /usr/bin/ld: /tmp/ccWZKEEm.ltrans104.ltrans.o: in function `testing::internal::TestFactoryImpl::CreateTest()': /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_options_netcdf.cxx:28:(.text+0xd25): warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [100%] Built target serial_tests make -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/build-check-unit-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/build-check-unit-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [100%] Built target build-check-unit-tests make -f CMakeFiles/build-check.dir/build.make CMakeFiles/build-check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/build-check.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/build-check.dir/build.make CMakeFiles/build-check.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/build-check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [100%] Built target build-check make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' + SEGFAULT_SIGNALS=segv + make check-unit-tests /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check-unit-tests make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles 47 make -f CMakeFiles/Makefile2 CMakeFiles/check-unit-tests.dir/all make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 2%] Built target gtest make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 4%] Built target pvpre make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 8%] Built target pvode make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/bout++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 68%] Built target bout++ make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 68%] Built target gmock make -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/CMakeFiles/serial_tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/unit/CMakeFiles/serial_tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [100%] Built target serial_tests make -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/build-check-unit-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/build-check-unit-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [100%] Built target build-check-unit-tests make -f CMakeFiles/check-unit-tests.dir/build.make CMakeFiles/check-unit-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/check-unit-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/check-unit-tests.dir/build.make CMakeFiles/check-unit-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' ctest -R serial_tests --output-on-failure Test project /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich Start 1: serial_tests 1/1 Test #1: serial_tests ..................... Passed 4.56 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 4.63 sec make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [100%] Built target check-unit-tests make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' + SEGFAULT_SIGNALS=segv + make check-mms-tests /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check-mms-tests make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles 33 make -f CMakeFiles/Makefile2 CMakeFiles/check-mms-tests.dir/all make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 3%] Built target pvpre make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 9%] Built target pvode make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/bout++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 93%] Built target bout++ make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 96%] Built target MMS-wave-1d-y make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/advection/CMakeFiles/MMS-advection.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/MMS/advection/CMakeFiles/MMS-advection.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 96%] Built target MMS-advection make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 96%] Built target MMS-diffusion make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [100%] Built target MMS-spatial-fci make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [100%] Built target MMS-wave-1d make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/build-check-mms-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/build-check-mms-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [100%] Built target build-check-mms-tests make -f CMakeFiles/check-mms-tests.dir/build.make CMakeFiles/check-mms-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/check-mms-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/check-mms-tests.dir/build.make CMakeFiles/check-mms-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' ctest -R MMS- --output-on-failure Test project /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich Start 52: MMS-diffusion 1/8 Test #52: MMS-diffusion .................... Passed 4.61 sec Start 53: MMS-spatial-fci 2/8 Test #53: MMS-spatial-fci .................. Passed 5.63 sec Start 54: MMS-wave-1d 3/8 Test #54: MMS-wave-1d ...................... Passed 3.66 sec Start 55: MMS-wave-1d-y 4/8 Test #55: MMS-wave-1d-y .................... Passed 3.71 sec Start 56: MMS-bracket 5/8 Test #56: MMS-bracket ...................... Passed 0.41 sec Start 57: MMS-derivatives3 6/8 Test #57: MMS-derivatives3 ................. Passed 0.63 sec Start 58: MMS-shiftedmetricinterp 7/8 Test #58: MMS-shiftedmetricinterp .......... Passed 3.37 sec Start 59: MMS-upwinding3 8/8 Test #59: MMS-upwinding3 ................... Passed 0.82 sec 100% tests passed, 0 tests failed out of 8 Total Test time (real) = 22.86 sec make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target check-mms-tests make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' + SEGFAULT_SIGNALS=segv + make check-integrated-tests /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check-integrated-tests make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles 54 make -f CMakeFiles/Makefile2 CMakeFiles/check-integrated-tests.dir/all make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 1%] Built target pvpre make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 5%] Built target pvode make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/bout++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 57%] Built target bout++ make -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 59%] Built target test-yupdown-weights make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-x86_64-linux-gnu.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 62%] Built target boutpp.cpython-312-x86_64-linux-gnu make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 64%] Building python interface cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpython-312-x86_64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-312-x86_64-linux-gnu.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/../boutpp/__init__.py make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 64%] Built target boutpp make -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 64%] Built target test-backtrace make -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 64%] Built target test_beuler make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 64%] Built target test-bout-override-default-option make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 66%] Built target test-command-args make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-communications/CMakeFiles/test-communications.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-communications/CMakeFiles/test-communications.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 66%] Built target test-communications make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 68%] Built target test-coordinates-initialization make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 68%] Built target test-cyclic make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 68%] Built target test-delp2 make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 70%] Built target test-datafile-facade make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 70%] Built target test-drift-instability make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 72%] Built target test-drift-instability-staggered make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 72%] Built target test-fieldgroupComm make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 74%] Built target test-griddata make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 74%] Built target test-griddata-yboundary-guards make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Built target test-gyro make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-initial/CMakeFiles/test-initial.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-initial/CMakeFiles/test-initial.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Built target test-initial make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 77%] Built target test-interchange-instability make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 77%] Built target test-interpolate make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 79%] Built target test-interpolate-z make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 79%] Built target test-invertable-operator make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 81%] Built target test-invpar make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 81%] Built target test-laplace make -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 83%] Built target test-laplace-petsc3d make -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 83%] Built target test-laplacexy-fv make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 83%] Built target test-laplacexy-short make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 85%] Built target test-laplacexz make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 85%] Built target test-multigrid-laplace make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 87%] Built target test-naulin-laplace make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 87%] Built target test-options-netcdf make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 88%] Built target test-petsc-laplace make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 88%] Built target test-petsc-laplace-MAST-grid make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 90%] Built target test-restart-io make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 90%] Built target test-restarting make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 92%] Built target test-smooth make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-snb/CMakeFiles/test-snb.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-snb/CMakeFiles/test-snb.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 92%] Built target test-snb make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-solver/CMakeFiles/test-solver.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-solver/CMakeFiles/test-solver.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 94%] Built target test-solver make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-squash/CMakeFiles/test-squash.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-squash/CMakeFiles/test-squash.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 94%] Built target test-squash make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 96%] Built target test-stopCheck make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 96%] Built target test-stopCheck-file make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 98%] Built target test-twistshift make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 98%] Built target test-twistshift-staggered make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-vec/CMakeFiles/test-vec.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-vec/CMakeFiles/test-vec.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [100%] Built target test-vec make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [100%] Built target test-yupdown make -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/build-check-integrated-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/build-check-integrated-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [100%] Built target build-check-integrated-tests make -f CMakeFiles/check-integrated-tests.dir/build.make CMakeFiles/check-integrated-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/check-integrated-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/check-integrated-tests.dir/build.make CMakeFiles/check-integrated-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' ctest -R test- --output-on-failure Test project /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich Start 2: test-backtrace 1/49 Test #2: test-backtrace ...................... Passed 0.83 sec Start 4: test-boutpp-collect 2/49 Test #4: test-boutpp-collect ................. Passed 0.48 sec Start 5: test-boutpp-collect-staggered 3/49 Test #5: test-boutpp-collect-staggered ....... Passed 0.48 sec Start 6: test-boutpp-legacy-model 4/49 Test #6: test-boutpp-legacy-model ............ Passed 0.57 sec Start 7: test-boutpp-mms-ddz 5/49 Test #7: test-boutpp-mms-ddz ................. Passed 0.39 sec Start 8: test-boutpp-print 6/49 Test #8: test-boutpp-print ................... Passed 0.40 sec Start 9: test-boutpp-simple-model 7/49 Test #9: test-boutpp-simple-model ............ Passed 0.59 sec Start 10: test-bout-override-default-option 8/49 Test #10: test-bout-override-default-option ... Passed 0.23 sec Start 11: test-command-args 9/49 Test #11: test-command-args ................... Passed 4.43 sec Start 12: test-communications 10/49 Test #12: test-communications ................. Passed 11.15 sec Start 13: test-coordinates-initialization 11/49 Test #13: test-coordinates-initialization ..... Passed 0.49 sec Start 14: test-cyclic 12/49 Test #14: test-cyclic ......................... Passed 4.46 sec Start 15: test-delp2 13/49 Test #15: test-delp2 .......................... Passed 7.96 sec Start 16: test-datafile-facade 14/49 Test #16: test-datafile-facade ................ Passed 2.03 sec Start 17: test-drift-instability 15/49 Test #17: test-drift-instability .............. Passed 3.35 sec Start 18: test-drift-instability-staggered 16/49 Test #18: test-drift-instability-staggered .... Passed 3.45 sec Start 19: test-fieldgroupComm 17/49 Test #19: test-fieldgroupComm ................. Passed 2.08 sec Start 20: test-griddata 18/49 Test #20: test-griddata ....................... Passed 0.84 sec Start 21: test-griddata-yboundary-guards 19/49 Test #21: test-griddata-yboundary-guards ...... Passed 9.23 sec Start 22: test-gyro 20/49 Test #22: test-gyro ........................... Passed 1.72 sec Start 23: test-initial 21/49 Test #23: test-initial ........................ Passed 6.46 sec Start 24: test-interchange-instability 22/49 Test #24: test-interchange-instability ........ Passed 7.11 sec Start 25: test-interpolate 23/49 Test #25: test-interpolate .................... Passed 5.47 sec Start 26: test-interpolate-z 24/49 Test #26: test-interpolate-z .................. Passed 2.15 sec Start 27: test-invertable-operator 25/49 Test #27: test-invertable-operator ............ Passed 1.29 sec Start 28: test-invpar 26/49 Test #28: test-invpar ......................... Passed 2.60 sec Start 29: test-laplace 27/49 Test #29: test-laplace ........................ Passed 7.72 sec Start 30: test-laplace-petsc3d 28/49 Test #30: test-laplace-petsc3d ................ Passed 6.87 sec Start 31: test-laplacexy-fv 29/49 Test #31: test-laplacexy-fv ................... Passed 60.54 sec Start 32: test-laplacexy-short 30/49 Test #32: test-laplacexy-short ................ Passed 149.92 sec Start 33: test-laplacexz 31/49 Test #33: test-laplacexz ...................... Passed 1.74 sec Start 34: test-multigrid-laplace 32/49 Test #34: test-multigrid-laplace .............. Passed 2.53 sec Start 35: test-naulin-laplace 33/49 Test #35: test-naulin-laplace ................. Passed 1.47 sec Start 36: test-options-netcdf 34/49 Test #36: test-options-netcdf ................. Passed 0.83 sec Start 37: test-petsc-laplace 35/49 Test #37: test-petsc-laplace .................. Passed 2.97 sec Start 38: test-petsc-laplace-MAST-grid 36/49 Test #38: test-petsc-laplace-MAST-grid ........ Passed 11.48 sec Start 39: test-restart-io 37/49 Test #39: test-restart-io ..................... Passed 2.83 sec Start 40: test-restarting 38/49 Test #40: test-restarting ..................... Passed 2.77 sec Start 41: test-smooth 39/49 Test #41: test-smooth ......................... Passed 2.12 sec Start 42: test-snb 40/49 Test #42: test-snb ............................ Passed 0.31 sec Start 43: test-solver 41/49 Test #43: test-solver ......................... Passed 1.69 sec Start 44: test-squash 42/49 Test #44: test-squash ......................... Passed 7.89 sec Start 45: test-stopCheck 43/49 Test #45: test-stopCheck ...................... Passed 0.36 sec Start 46: test-stopCheck-file 44/49 Test #46: test-stopCheck-file ................. Passed 2.81 sec Start 47: test-twistshift 45/49 Test #47: test-twistshift ..................... Passed 0.88 sec Start 48: test-twistshift-staggered 46/49 Test #48: test-twistshift-staggered ........... Passed 0.88 sec Start 49: test-vec 47/49 Test #49: test-vec ............................ Passed 0.66 sec Start 50: test-yupdown 48/49 Test #50: test-yupdown ........................ Passed 1.25 sec Start 51: test-yupdown-weights 49/49 Test #51: test-yupdown-weights ................ Passed 0.87 sec 100% tests passed, 0 tests failed out of 49 Total Test time (real) = 351.75 sec make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target check-integrated-tests make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' + popd ~/build/BUILD/BOUT++-v5.1.0 + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/mpich/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval 'unset LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: bout++-mpich-5.1.0-7.fc40.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.P97xPs + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v5.1.0 + DOCDIR=/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++-mpich + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++-mpich + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/README.md /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++-mpich + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CITATION.bib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++-mpich + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CITATION.cff /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++-mpich + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CHANGELOG.md /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++-mpich + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++-mpich + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.5ZJIVc + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v5.1.0 + LICENSEDIR=/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/licenses/bout++-mpich + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/licenses/bout++-mpich + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/LICENSE /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/licenses/bout++-mpich + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/LICENSE.GPL /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/licenses/bout++-mpich + RPM_EC=0 ++ jobs -p + exit 0 Provides: bout++-mpich = 5.1.0-7.fc40 bout++-mpich(x86-64) = 5.1.0-7.fc40 bundled(libpvode) libbout++.so.5.1.0()(64bit)(mpich-x86_64) libpvode.so.1.0.0()(64bit)(mpich-x86_64) libpvpre.so.1.0.0()(64bit)(mpich-x86_64) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/python3 /usr/bin/sh libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfftw3.so.3()(64bit) libflexiblas.so.3()(64bit) libfmt.so.10()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libmpi.so.12()(64bit)(mpich-x86_64) libnetcdf.so.19()(64bit) libnetcdf_c++4.so.1()(64bit) libpetsc.so.3.20()(64bit)(mpich-x86_64) libpvode.so.1.0.0()(64bit)(mpich-x86_64) libpvpre.so.1.0.0()(64bit)(mpich-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsundials_arkode.so.5()(64bit)(mpich-x86_64) libsundials_cvode.so.6()(64bit)(mpich-x86_64) libsundials_ida.so.6()(64bit)(mpich-x86_64) libsundials_nvecparallel.so.6()(64bit)(mpich-x86_64) rtld(GNU_HASH) Recommends: environment-modules python3-boutdata python3-boututils python3-xbout Processing files: bout++-mpich-devel-5.1.0-7.fc40.x86_64 Provides: bout++-mpich-devel = 5.1.0-7.fc40 bout++-mpich-devel(x86-64) = 5.1.0-7.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: fftw-devel flexiblas-devel gcc-c++ gettext-devel hdf5-devel hdf5-mpich-devel make mpark-variant-devel mpich-devel netcdf-cxx4-devel netcdf-devel petsc-mpich-devel sundials-devel sundials-mpich-devel zlib-devel Processing files: python3-bout++-mpich-5.1.0-7.fc40.x86_64 Provides: libboutpp.cpython-312-x86_64-linux-gnu.so()(64bit)(mpich-x86_64) python-bout++-mpich = 5.1.0-7.fc40 python3-bout++-mpich = 5.1.0-7.fc40 python3-bout++-mpich(x86-64) = 5.1.0-7.fc40 python3.12-bout++-mpich = 5.1.0-7.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbout++.so.5.1.0()(64bit)(mpich-x86_64) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfmt.so.10()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.12 rtld(GNU_HASH) Recommends: python3-xbout Processing files: bout++-openmpi-5.1.0-7.fc40.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.GTajPE + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v5.1.0 + DOCDIR=/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++-openmpi + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++-openmpi + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/README.md /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++-openmpi + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CITATION.bib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++-openmpi + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CITATION.cff /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++-openmpi + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CHANGELOG.md /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++-openmpi + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/bout++-openmpi + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.CMpVE5 + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v5.1.0 + LICENSEDIR=/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/licenses/bout++-openmpi + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/licenses/bout++-openmpi + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/LICENSE /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/licenses/bout++-openmpi + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/LICENSE.GPL /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/licenses/bout++-openmpi + RPM_EC=0 ++ jobs -p + exit 0 Provides: bout++-openmpi = 5.1.0-7.fc40 bout++-openmpi(x86-64) = 5.1.0-7.fc40 bundled(libpvode) libbout++.so.5.1.0()(64bit)(openmpi-x86_64) libpvode.so.1.0.0()(64bit)(openmpi-x86_64) libpvpre.so.1.0.0()(64bit)(openmpi-x86_64) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/python3 /usr/bin/sh libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfftw3.so.3()(64bit) libflexiblas.so.3()(64bit) libfmt.so.10()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libmpi.so.40()(64bit)(openmpi-x86_64) libnetcdf.so.19()(64bit) libnetcdf_c++4.so.1()(64bit) libpetsc.so.3.20()(64bit)(openmpi-x86_64) libpvode.so.1.0.0()(64bit)(openmpi-x86_64) libpvpre.so.1.0.0()(64bit)(openmpi-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsundials_arkode.so.5()(64bit)(openmpi-x86_64) libsundials_cvode.so.6()(64bit)(openmpi-x86_64) libsundials_ida.so.6()(64bit)(openmpi-x86_64) libsundials_nvecparallel.so.6()(64bit)(openmpi-x86_64) rtld(GNU_HASH) Recommends: environment-modules python3-boutdata python3-boututils python3-xbout Processing files: bout++-openmpi-devel-5.1.0-7.fc40.x86_64 Provides: bout++-openmpi-devel = 5.1.0-7.fc40 bout++-openmpi-devel(x86-64) = 5.1.0-7.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: fftw-devel flexiblas-devel gcc-c++ gettext-devel hdf5-devel hdf5-openmpi-devel make mpark-variant-devel netcdf-cxx4-devel netcdf-devel openmpi-devel petsc-openmpi-devel sundials-devel sundials-openmpi-devel zlib-devel Processing files: python3-bout++-openmpi-5.1.0-7.fc40.x86_64 Provides: libboutpp.cpython-312-x86_64-linux-gnu.so()(64bit)(openmpi-x86_64) python-bout++-openmpi = 5.1.0-7.fc40 python3-bout++-openmpi = 5.1.0-7.fc40 python3-bout++-openmpi(x86-64) = 5.1.0-7.fc40 python3.12-bout++-openmpi = 5.1.0-7.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbout++.so.5.1.0()(64bit)(openmpi-x86_64) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfmt.so.10()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.12 rtld(GNU_HASH) Recommends: python3-xbout Processing files: bout++-common-5.1.0-7.fc40.x86_64 Provides: bout++-common = 5.1.0-7.fc40 bout++-common(x86-64) = 5.1.0-7.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-bout++-5.1.0-7.fc40.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Cmivoo + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v5.1.0 + DOCDIR=/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/python3-bout++ + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/python3-bout++ + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/README.md /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/python3-bout++ + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CITATION.bib /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/python3-bout++ + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CITATION.cff /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/python3-bout++ + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CHANGELOG.md /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/python3-bout++ + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/doc/python3-bout++ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.G5jt7y + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v5.1.0 + LICENSEDIR=/builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/licenses/python3-bout++ + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/licenses/python3-bout++ + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/LICENSE /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/licenses/python3-bout++ + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/LICENSE.GPL /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64/usr/share/licenses/python3-bout++ + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-bout++ = 5.1.0-7.fc40 python3-bout++ = 5.1.0-7.fc40 python3.12-bout++ = 5.1.0-7.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python3-boutdata python3-boututils python3-matplotlib python3-scipy Processing files: bout++-doc-5.1.0-7.fc40.noarch Provides: bout++-doc = 5.1.0-7.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bout++-debugsource-5.1.0-7.fc40.x86_64 Provides: bout++-debugsource = 5.1.0-7.fc40 bout++-debugsource(x86-64) = 5.1.0-7.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bout++-debuginfo-5.1.0-7.fc40.x86_64 Provides: bout++-debuginfo = 5.1.0-7.fc40 bout++-debuginfo(x86-64) = 5.1.0-7.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 5.1.0-7.fc40 Processing files: bout++-mpich-debuginfo-5.1.0-7.fc40.x86_64 Provides: bout++-mpich-debuginfo = 5.1.0-7.fc40 bout++-mpich-debuginfo(x86-64) = 5.1.0-7.fc40 debuginfo(build-id) = 2a1339716ece7cd5b00fdff16594e2000bb2cdc5 debuginfo(build-id) = 5119940ff08efce9c9d834d075c81875b3d61ff6 debuginfo(build-id) = 94991ac8a59216f19da4a8f7a7f1760fd90f13db Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 5.1.0-7.fc40 Processing files: python3-bout++-mpich-debuginfo-5.1.0-7.fc40.x86_64 Provides: debuginfo(build-id) = 0d62f1fc5ad1ee92d0c24dba513ab3b09fb7349a python-bout++-mpich-debuginfo = 5.1.0-7.fc40 python3-bout++-mpich-debuginfo = 5.1.0-7.fc40 python3-bout++-mpich-debuginfo(x86-64) = 5.1.0-7.fc40 python3.12-bout++-mpich-debuginfo = 5.1.0-7.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 5.1.0-7.fc40 Processing files: bout++-openmpi-debuginfo-5.1.0-7.fc40.x86_64 Provides: bout++-openmpi-debuginfo = 5.1.0-7.fc40 bout++-openmpi-debuginfo(x86-64) = 5.1.0-7.fc40 debuginfo(build-id) = 1073a8e064d8a6bbe90573a9ccfb19eb10bac020 debuginfo(build-id) = 2090262f4d6949c01e016cb13a3c38ca388ef3fd debuginfo(build-id) = 803c16ea5033cd1cc1a3a561bc916c1fa2acd5ed Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 5.1.0-7.fc40 Processing files: python3-bout++-openmpi-debuginfo-5.1.0-7.fc40.x86_64 Provides: debuginfo(build-id) = d5519bdfcf279007acc833740bdfe1062b58cfef python-bout++-openmpi-debuginfo = 5.1.0-7.fc40 python3-bout++-openmpi-debuginfo = 5.1.0-7.fc40 python3-bout++-openmpi-debuginfo(x86-64) = 5.1.0-7.fc40 python3.12-bout++-openmpi-debuginfo = 5.1.0-7.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 5.1.0-7.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64 Wrote: /builddir/build/RPMS/bout++-debugsource-5.1.0-7.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-openmpi-debuginfo-5.1.0-7.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-mpich-debuginfo-5.1.0-7.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-debuginfo-5.1.0-7.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-doc-5.1.0-7.fc40.noarch.rpm Wrote: /builddir/build/RPMS/bout++-openmpi-5.1.0-7.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-openmpi-devel-5.1.0-7.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-mpich-5.1.0-7.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-mpich-devel-5.1.0-7.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-mpich-5.1.0-7.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-openmpi-5.1.0-7.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-common-5.1.0-7.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-5.1.0-7.fc40.noarch.rpm Wrote: /builddir/build/RPMS/bout++-mpich-debuginfo-5.1.0-7.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-openmpi-debuginfo-5.1.0-7.fc40.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.mmbqpi + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v5.1.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/bout++-5.1.0-7.fc40.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.GcUqt4 + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/BOUT++-v5.1.0-SPECPARTS + rm -rf BOUT++-v5.1.0 BOUT++-v5.1.0.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild bout++-5.1.0-7.fc40.src.rpm Finish: build phase for bout++-5.1.0-7.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1706794837.778670/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-x86_64-1706794837.778670/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1706794837.778670/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/bout++-5.1.0-7.fc40.src.rpm) Config(child) 33 minutes 10 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "bout++-doc", "epoch": null, "version": "5.1.0", "release": "7.fc40", "arch": "noarch" }, { "name": "bout++-mpich-debuginfo", "epoch": null, "version": "5.1.0", "release": "7.fc40", "arch": "x86_64" }, { "name": "python3-bout++-mpich", "epoch": null, "version": "5.1.0", "release": "7.fc40", "arch": "x86_64" }, { "name": "bout++-openmpi-debuginfo", "epoch": null, "version": "5.1.0", "release": "7.fc40", "arch": "x86_64" }, { "name": "python3-bout++-openmpi-debuginfo", "epoch": null, "version": "5.1.0", "release": "7.fc40", "arch": "x86_64" }, { "name": "bout++-common", "epoch": null, "version": "5.1.0", "release": "7.fc40", "arch": "x86_64" }, { "name": "bout++-debuginfo", "epoch": null, "version": "5.1.0", "release": "7.fc40", "arch": "x86_64" }, { "name": "python3-bout++-mpich-debuginfo", "epoch": null, "version": "5.1.0", "release": "7.fc40", "arch": "x86_64" }, { "name": "bout++-mpich", "epoch": null, "version": "5.1.0", "release": "7.fc40", "arch": "x86_64" }, { "name": "bout++-openmpi-devel", "epoch": null, "version": "5.1.0", "release": "7.fc40", "arch": "x86_64" }, { "name": "bout++-mpich-devel", "epoch": null, "version": "5.1.0", "release": "7.fc40", "arch": "x86_64" }, { "name": "python3-bout++", "epoch": null, "version": "5.1.0", "release": "7.fc40", "arch": "noarch" }, { "name": "bout++", "epoch": null, "version": "5.1.0", "release": "7.fc40", "arch": "src" }, { "name": "bout++-debugsource", "epoch": null, "version": "5.1.0", "release": "7.fc40", "arch": "x86_64" }, { "name": "python3-bout++-openmpi", "epoch": null, "version": "5.1.0", "release": "7.fc40", "arch": "x86_64" }, { "name": "bout++-openmpi", "epoch": null, "version": "5.1.0", "release": "7.fc40", "arch": "x86_64" } ] } RPMResults finished