Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1d6' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6185423-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.68 PID: 5590 Logging PID: 5591 Task: {'appstream': False, 'background': True, 'build_id': 6185423, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'f08a5ae032502a69ac5e095ffd5db5d10d91ac4a', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.11.1/ProDy', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'ProDy', 'package_version': '2.4.0-4', 'project_dirname': 'python3-scipy-1.11.1', 'project_name': 'python3-scipy-1.11.1', 'project_owner': 'psimovec', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/python3-scipy-1.11.1/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/python3-scipy-1.11.1--https://src.fedoraproject.org/user/releng', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/releng', 'tags': [], 'task_id': '6185423-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.11.1/ProDy /var/lib/copr-rpmbuild/workspace/workdir-fozzzbum/ProDy --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.11.1/ProDy', '/var/lib/copr-rpmbuild/workspace/workdir-fozzzbum/ProDy', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-fozzzbum/ProDy'... Running: git checkout f08a5ae032502a69ac5e095ffd5db5d10d91ac4a -- cmd: ['git', 'checkout', 'f08a5ae032502a69ac5e095ffd5db5d10d91ac4a', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-fozzzbum/ProDy rc: 0 stdout: stderr: Note: switching to 'f08a5ae032502a69ac5e095ffd5db5d10d91ac4a'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at f08a5ae automatic import of ProDy Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-fozzzbum/ProDy rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading ProDy-2.4.0.tar.gz INFO: Calling: curl -H Pragma: -o ProDy-2.4.0.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/python3-scipy-1.11.1/ProDy/ProDy-2.4.0.tar.gz/md5/cd8edbbd2ebe14a8f62fbb5c685f2e82/ProDy-2.4.0.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 21.2M 100 21.2M 0 0 1814k 0 0:00:11 0:00:11 --:--:-- 1375k INFO: Reading stdout from command: md5sum ProDy-2.4.0.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-fozzzbum/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-fozzzbum/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1689765874.386041 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-fozzzbum/ProDy/ProDy.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1689765874.386041/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 2.4 MB/s | 1.3 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 2.2 MB/s | 70 MB 00:32 fedora 18 MB/s | 72 MB 00:03 Last metadata expiration check: 0:00:01 ago on Wed Jul 19 11:25:28 2023. Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing: dnf-plugins-core noarch 4.4.1-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38 k python3-dnf noarch 4.16.1-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 546 k Installing dependencies: alternatives x86_64 1.24-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k audit-libs x86_64 3.1.1-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 117 k basesystem noarch 11-17.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.0 k bash x86_64 5.2.15-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M bzip2-libs x86_64 1.0.8-13.fc38 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 686 k tpm2-tss x86_64 4.0.1-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 671 k tzdata noarch 2023c-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 433 k xz-libs x86_64 5.4.3-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 108 k zchunk-libs x86_64 1.3.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 52 k zlib x86_64 1.2.13-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 95 k Transaction Summary ======================================================================================================================================== Install 140 Packages Total download size: 56 M Installed size: 201 M Downloading Packages: (1/140): basesystem-11-17.fc39.noarch.rpm 28 kB/s | 7.0 kB 00:00 (2/140): audit-libs-3.1.1-3.fc39.x86_64.rpm 273 kB/s | 117 kB 00:00 (3/140): alternatives-1.24-1.fc39.x86_64.rpm 88 kB/s | 39 kB 00:00 (4/140): bzip2-libs-1.0.8-13.fc38.x86_64.rpm 90 kB/s | 41 kB 00:00 (5/140): bash-5.2.15-3.fc38.x86_64.rpm 2.8 MB/s | 1.8 MB 00:00 (6/140): ca-certificates-2023.2.60-2.fc38.noarc 759 kB/s | 845 kB 00:01 (7/140): coreutils-common-9.3-1.fc39.x86_64.rpm 3.0 MB/s | 2.1 MB 00:00 (8/140): crypto-policies-20230614-1.git5f3458e. 461 kB/s | 65 kB 00:00 (9/140): curl-8.1.2-1.fc39.x86_64.rpm 1.8 MB/s | 345 kB 00:00 (10/140): dbus-libs-1.14.8-1.fc39.x86_64.rpm 2.0 MB/s | 156 kB 00:00 (11/140): dnf-data-4.16.1-3.fc39.noarch.rpm 457 kB/s | 38 kB 00:00 (12/140): dnf-plugins-core-4.4.1-4.fc39.noarch. 485 kB/s | 38 kB 00:00 (13/140): elfutils-default-yama-scope-0.189-3.f 159 kB/s | 13 kB 00:00 (14/140): elfutils-libelf-0.189-3.fc39.x86_64.r 1.3 MB/s | 195 kB 00:00 (15/140): elfutils-libs-0.189-3.fc39.x86_64.rpm 1.7 MB/s | 258 kB 00:00 (16/140): expat-2.5.0-2.fc38.x86_64.rpm 1.2 MB/s | 110 kB 00:00 (17/140): fedora-gpg-keys-39-0.3.noarch.rpm 1.2 MB/s | 117 kB 00:00 (18/140): fedora-release-39-0.21.noarch.rpm 57 kB/s | 6.9 kB 00:00 (19/140): fedora-release-common-39-0.21.noarch. 144 kB/s | 17 kB 00:00 (20/140): cyrus-sasl-lib-2.1.28-10.fc39.x86_64. 679 kB/s | 792 kB 00:01 (21/140): fedora-release-identity-basic-39-0.21 53 kB/s | 7.6 kB 00:00 (22/140): fedora-repos-39-0.3.noarch.rpm 58 kB/s | 8.8 kB 00:00 (23/140): fedora-repos-rawhide-39-0.3.noarch.rp 64 kB/s | 8.4 kB 00:00 (24/140): coreutils-9.3-1.fc39.x86_64.rpm 442 kB/s | 1.1 MB 00:02 (25/140): file-libs-5.44-4.fc39.x86_64.rpm 1.6 MB/s | 729 kB 00:00 (26/140): fmt-10.0.0-2.fc39.x86_64.rpm 801 kB/s | 127 kB 00:00 (27/140): gawk-5.2.2-1.fc39.x86_64.rpm 1.9 MB/s | 1.1 MB 00:00 (28/140): gdbm-libs-1.23-3.fc38.x86_64.rpm 374 kB/s | 56 kB 00:00 (29/140): findutils-4.9.0-4.fc39.x86_64.rpm 453 kB/s | 482 kB 00:01 (30/140): filesystem-3.18-4.fc39.x86_64.rpm 572 kB/s | 1.1 MB 00:01 (31/140): glibc-common-2.37.9000-17.fc39.x86_64 559 kB/s | 341 kB 00:00 (32/140): glib2-2.77.0-3.fc39.x86_64.rpm 1.9 MB/s | 2.8 MB 00:01 (33/140): glibc-minimal-langpack-2.37.9000-17.f 242 kB/s | 64 kB 00:00 (34/140): gmp-6.2.1-4.fc38.x86_64.rpm 1.2 MB/s | 313 kB 00:00 (35/140): gnutls-3.8.0-6.fc39.x86_64.rpm 1.9 MB/s | 1.1 MB 00:00 (36/140): gpgme-1.20.0-4.fc39.x86_64.rpm 947 kB/s | 210 kB 00:00 (37/140): grep-3.11-1.fc39.x86_64.rpm 1.1 MB/s | 287 kB 00:00 (38/140): ima-evm-utils-1.5-1.fc39.x86_64.rpm 312 kB/s | 63 kB 00:00 (39/140): json-c-0.16-4.fc38.x86_64.rpm 216 kB/s | 41 kB 00:00 (40/140): keyutils-libs-1.6.1-6.fc38.x86_64.rpm 164 kB/s | 31 kB 00:00 (41/140): krb5-libs-1.21-1.fc39.x86_64.rpm 1.7 MB/s | 761 kB 00:00 (42/140): libacl-2.3.1-7.fc39.x86_64.rpm 111 kB/s | 23 kB 00:00 (43/140): libarchive-3.6.1-5.fc39.x86_64.rpm 1.3 MB/s | 400 kB 00:00 (44/140): libassuan-2.5.6-1.fc39.x86_64.rpm 422 kB/s | 67 kB 00:00 (45/140): glibc-2.37.9000-17.fc39.x86_64.rpm 501 kB/s | 2.2 MB 00:04 (46/140): libattr-2.5.1-7.fc39.x86_64.rpm 107 kB/s | 18 kB 00:00 (47/140): libb2-0.98.1-8.fc38.x86_64.rpm 151 kB/s | 25 kB 00:00 (48/140): libblkid-2.39.1-2.fc39.x86_64.rpm 685 kB/s | 116 kB 00:00 (49/140): gnupg2-2.4.3-1.fc39.x86_64.rpm 833 kB/s | 2.6 MB 00:03 (50/140): libcap-2.48-6.fc38.x86_64.rpm 410 kB/s | 67 kB 00:00 (51/140): libcap-ng-0.8.3-6.fc39.x86_64.rpm 199 kB/s | 32 kB 00:00 (52/140): libcom_err-1.47.0-1.fc39.x86_64.rpm 133 kB/s | 26 kB 00:00 (53/140): libcomps-0.1.19-2.fc39.x86_64.rpm 399 kB/s | 77 kB 00:00 (54/140): libbrotli-1.0.9-12.fc39.x86_64.rpm 482 kB/s | 317 kB 00:00 (55/140): libcurl-8.1.2-1.fc39.x86_64.rpm 870 kB/s | 323 kB 00:00 (56/140): libdnf-0.70.1-4.fc39.x86_64.rpm 1.7 MB/s | 658 kB 00:00 (57/140): libeconf-0.4.0-5.fc38.x86_64.rpm 171 kB/s | 27 kB 00:00 (58/140): libevent-2.1.12-8.fc38.x86_64.rpm 1.1 MB/s | 257 kB 00:00 (59/140): libffi-3.4.4-3.fc39.x86_64.rpm 233 kB/s | 40 kB 00:00 (60/140): libfsverity-1.4-9.fc38.x86_64.rpm 116 kB/s | 19 kB 00:00 (61/140): libgcc-13.1.1-4.fc39.x86_64.rpm 399 kB/s | 107 kB 00:00 (62/140): libgcrypt-1.10.2-1.fc39.x86_64.rpm 1.4 MB/s | 514 kB 00:00 (63/140): libgpg-error-1.47-1.fc39.x86_64.rpm 740 kB/s | 224 kB 00:00 (64/140): libgomp-13.1.1-4.fc39.x86_64.rpm 636 kB/s | 317 kB 00:00 (65/140): libdnf5-5.1.0-1.fc39.x86_64.rpm 622 kB/s | 879 kB 00:01 (66/140): libksba-1.6.4-1.fc39.x86_64.rpm 729 kB/s | 159 kB 00:00 (67/140): libmount-2.39.1-2.fc39.x86_64.rpm 412 kB/s | 155 kB 00:00 (68/140): libmodulemd-2.15.0-4.fc39.x86_64.rpm 506 kB/s | 232 kB 00:00 (69/140): libnsl2-2.0.0-5.fc38.x86_64.rpm 183 kB/s | 30 kB 00:00 (70/140): libnghttp2-1.55.1-1.fc39.x86_64.rpm 314 kB/s | 75 kB 00:00 (71/140): libidn2-2.3.4-2.fc38.x86_64.rpm 175 kB/s | 153 kB 00:00 (72/140): libpsl-0.21.2-3.fc39.x86_64.rpm 287 kB/s | 63 kB 00:00 (73/140): libreport-filesystem-2.17.11-2.fc39.n 81 kB/s | 14 kB 00:00 (74/140): librepo-1.15.1-3.fc39.x86_64.rpm 438 kB/s | 95 kB 00:00 (75/140): libselinux-3.5-4.fc39.x86_64.rpm 430 kB/s | 87 kB 00:00 (76/140): libsemanage-3.5-3.fc39.x86_64.rpm 589 kB/s | 119 kB 00:00 (77/140): libsigsegv-2.14-4.fc38.x86_64.rpm 170 kB/s | 27 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libzstd-1.5.5-1.fc39.x86_64.rpm 645 kB/s | 308 kB 00:00 (93/140): lua-libs-5.4.4-9.fc39.x86_64.rpm 329 kB/s | 133 kB 00:00 (94/140): lz4-libs-1.9.4-3.fc39.x86_64.rpm 322 kB/s | 67 kB 00:00 (95/140): mpdecimal-2.5.1-6.fc38.x86_64.rpm 297 kB/s | 89 kB 00:00 (96/140): libxml2-2.10.4-2.fc39.x86_64.rpm 512 kB/s | 701 kB 00:01 (97/140): ncurses-base-6.4-5.20230520.fc39.noar 208 kB/s | 63 kB 00:00 (98/140): mpfr-4.2.0-2.fc39.x86_64.rpm 421 kB/s | 343 kB 00:00 (99/140): npth-1.6-13.fc39.x86_64.rpm 19 kB/s | 24 kB 00:01 (100/140): nettle-3.9.1-1.fc39.x86_64.rpm 237 kB/s | 425 kB 00:01 (101/140): ncurses-libs-6.4-5.20230520.fc39.x86 168 kB/s | 336 kB 00:01 (102/140): p11-kit-0.24.1-6.fc38.x86_64.rpm 274 kB/s | 345 kB 00:01 (103/140): openldap-2.6.4-3.fc39.x86_64.rpm 130 kB/s | 254 kB 00:01 (104/140): p11-kit-trust-0.24.1-6.fc38.x86_64.r 254 kB/s | 136 kB 00:00 (105/140): pcre2-syntax-10.42-1.fc38.1.noarch.r 256 kB/s | 144 kB 00:00 (106/140): popt-1.19-2.fc38.x86_64.rpm 168 kB/s | 60 kB 00:00 (107/140): pcre2-10.42-1.fc38.1.x86_64.rpm 186 kB/s | 234 kB 00:01 (108/140): publicsuffix-list-dafsa-20230614-1.f 163 kB/s | 57 kB 00:00 (109/140): python3-3.12.0~b4-1.fc39.x86_64.rpm 179 kB/s | 26 kB 00:00 (110/140): python3-dateutil-2.8.2-9.fc39.noarch 443 kB/s | 344 kB 00:00 (111/140): python3-dbus-1.3.2-3.fc39.x86_64.rpm 264 kB/s | 146 kB 00:00 (112/140): python3-distro-1.8.0-5.fc39.noarch.r 207 kB/s | 44 kB 00:00 (113/140): openssl-libs-3.0.8-2.fc39.x86_64.rpm 407 kB/s | 2.1 MB 00:05 (114/140): python3-dnf-plugins-core-4.4.1-4.fc3 391 kB/s | 278 kB 00:00 (115/140): python3-dnf-4.16.1-3.fc39.noarch.rpm 457 kB/s | 546 kB 00:01 (116/140): python3-hawkey-0.70.1-4.fc39.x86_64. 441 kB/s | 107 kB 00:00 (117/140): python3-libcomps-0.1.19-2.fc39.x86_6 301 kB/s | 48 kB 00:00 (118/140): python3-gpg-1.20.0-4.fc39.x86_64.rpm 467 kB/s | 283 kB 00:00 (119/140): python-pip-wheel-23.1.2-2.fc39.noarc 333 kB/s | 1.4 MB 00:04 (120/140): python3-rpm-4.18.91-7.fc39.x86_64.rp 232 kB/s | 67 kB 00:00 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tpm2-tss-4.0.1-3.fc38.x86_64.rpm 309 kB/s | 671 kB 00:02 (136/140): tzdata-2023c-1.fc39.noarch.rpm 404 kB/s | 433 kB 00:01 (137/140): zchunk-libs-1.3.1-1.fc39.x86_64.rpm 286 kB/s | 52 kB 00:00 (138/140): xz-libs-5.4.3-1.fc39.x86_64.rpm 476 kB/s | 108 kB 00:00 (139/140): zlib-1.2.13-3.fc38.x86_64.rpm 479 kB/s | 95 kB 00:00 (140/140): python3-libs-3.12.0~b4-1.fc39.x86_64 699 kB/s | 8.9 MB 00:12 -------------------------------------------------------------------------------- Total 1.5 MB/s | 56 MB 00:37 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-4.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.1.1-4.fc39.x86_64 1/140 Running scriptlet: libgcc-13.1.1-4.fc39.x86_64 1/140 Installing : tzdata-2023c-1.fc39.noarch 2/140 Installing : crypto-policies-20230614-1.git5f3458e.fc39.noarc 3/140 Running scriptlet: crypto-policies-20230614-1.git5f3458e.fc39.noarc 3/140 Installing : fedora-release-identity-basic-39-0.21.noarch 4/140 Installing : publicsuffix-list-dafsa-20230614-1.fc39.noarch 5/140 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 6/140 Installing : ncurses-base-6.4-5.20230520.fc39.noarch 7/140 Installing : libssh-config-0.10.5-1.fc39.noarch 8/140 Installing : libreport-filesystem-2.17.11-2.fc39.noarch 9/140 Installing : fedora-gpg-keys-39-0.3.noarch 10/140 Installing : fedora-release-39-0.21.noarch 11/140 Installing : fedora-release-common-39-0.21.noarch 12/140 Installing : fedora-repos-rawhide-39-0.3.noarch 13/140 Installing : fedora-repos-39-0.3.noarch 14/140 Installing : setup-2.14.3-3.fc39.noarch 15/140 Running scriptlet: setup-2.14.3-3.fc39.noarch 15/140 Installing : filesystem-3.18-4.fc39.x86_64 16/140 Installing : basesystem-11-17.fc39.noarch 17/140 Installing : glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 18/140 Installing : glibc-common-2.37.9000-17.fc39.x86_64 19/140 Running scriptlet: glibc-2.37.9000-17.fc39.x86_64 20/140 Installing : glibc-2.37.9000-17.fc39.x86_64 20/140 Running scriptlet: glibc-2.37.9000-17.fc39.x86_64 20/140 Installing : ncurses-libs-6.4-5.20230520.fc39.x86_64 21/140 Installing : bash-5.2.15-3.fc38.x86_64 22/140 Running scriptlet: bash-5.2.15-3.fc38.x86_64 22/140 Installing : zlib-1.2.13-3.fc38.x86_64 23/140 Installing : bzip2-libs-1.0.8-13.fc38.x86_64 24/140 Installing : libzstd-1.5.5-1.fc39.x86_64 25/140 Installing : xz-libs-5.4.3-1.fc39.x86_64 26/140 Installing : libxml2-2.10.4-2.fc39.x86_64 27/140 Installing : sqlite-libs-3.42.0-6.fc39.x86_64 28/140 Installing : gmp-1:6.2.1-4.fc38.x86_64 29/140 Installing 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librepo-1.15.1-3.fc39.x86_64 120/140 Installing : python3-gpg-1.20.0-4.fc39.x86_64 121/140 Installing : ima-evm-utils-1.5-1.fc39.x86_64 122/140 Installing : curl-8.1.2-1.fc39.x86_64 123/140 Installing : libfsverity-1.4-9.fc38.x86_64 124/140 Installing : rpm-sequoia-1.4.1-1.fc39.x86_64 125/140 Installing : rpm-libs-4.18.91-7.fc39.x86_64 126/140 Installing : libmodulemd-2.15.0-4.fc39.x86_64 127/140 Installing : libsolv-0.7.24-6.fc39.x86_64 128/140 Installing : libdnf-0.70.1-4.fc39.x86_64 129/140 Installing : python3-libdnf-0.70.1-4.fc39.x86_64 130/140 Installing : python3-hawkey-0.70.1-4.fc39.x86_64 131/140 Installing : libdnf5-5.1.0-1.fc39.x86_64 132/140 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : dnf-data-4.16.1-3.fc39.noarch 133/140 Installing : rpm-build-libs-4.18.91-7.fc39.x86_64 134/140 Installing : rpm-sign-libs-4.18.91-7.fc39.x86_64 135/140 Installing : python3-rpm-4.18.91-7.fc39.x86_64 136/140 Installing : python3-dnf-4.16.1-3.fc39.noarch 137/140 Installing : python3-dnf-plugins-core-4.4.1-4.fc39.noarch 138/140 Installing : dnf-plugins-core-4.4.1-4.fc39.noarch 139/140 Running scriptlet: rpm-4.18.91-7.fc39.x86_64 140/140 Installing : rpm-4.18.91-7.fc39.x86_64 140/140 Running scriptlet: filesystem-3.18-4.fc39.x86_64 140/140 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 140/140 Running scriptlet: rpm-4.18.91-7.fc39.x86_64 140/140 Verifying : alternatives-1.24-1.fc39.x86_64 1/140 Verifying : audit-libs-3.1.1-3.fc39.x86_64 2/140 Verifying : basesystem-11-17.fc39.noarch 3/140 Verifying : bash-5.2.15-3.fc38.x86_64 4/140 Verifying : bzip2-libs-1.0.8-13.fc38.x86_64 5/140 Verifying : ca-certificates-2023.2.60-2.fc38.noarch 6/140 Verifying : coreutils-9.3-1.fc39.x86_64 7/140 Verifying : coreutils-common-9.3-1.fc39.x86_64 8/140 Verifying : crypto-policies-20230614-1.git5f3458e.fc39.noarc 9/140 Verifying : curl-8.1.2-1.fc39.x86_64 10/140 Verifying : cyrus-sasl-lib-2.1.28-10.fc39.x86_64 11/140 Verifying : 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python3-3.12.0~b4-1.fc39.x86_64 111/140 Verifying : python3-dateutil-1:2.8.2-9.fc39.noarch 112/140 Verifying : python3-dbus-1.3.2-3.fc39.x86_64 113/140 Verifying : python3-distro-1.8.0-5.fc39.noarch 114/140 Verifying : python3-dnf-4.16.1-3.fc39.noarch 115/140 Verifying : python3-dnf-plugins-core-4.4.1-4.fc39.noarch 116/140 Verifying : python3-gpg-1.20.0-4.fc39.x86_64 117/140 Verifying : python3-hawkey-0.70.1-4.fc39.x86_64 118/140 Verifying : python3-libcomps-0.1.19-2.fc39.x86_64 119/140 Verifying : python3-libdnf-0.70.1-4.fc39.x86_64 120/140 Verifying : python3-libs-3.12.0~b4-1.fc39.x86_64 121/140 Verifying : python3-rpm-4.18.91-7.fc39.x86_64 122/140 Verifying : python3-six-1.16.0-11.fc39.noarch 123/140 Verifying : python3-systemd-235-4.fc39.x86_64 124/140 Verifying : readline-8.2-3.fc38.x86_64 125/140 Verifying : rpm-4.18.91-7.fc39.x86_64 126/140 Verifying : rpm-build-libs-4.18.91-7.fc39.x86_64 127/140 Verifying : rpm-libs-4.18.91-7.fc39.x86_64 128/140 Verifying : rpm-sequoia-1.4.1-1.fc39.x86_64 129/140 Verifying : rpm-sign-libs-4.18.91-7.fc39.x86_64 130/140 Verifying : sed-4.8-12.fc38.x86_64 131/140 Verifying : setup-2.14.3-3.fc39.noarch 132/140 Verifying : shadow-utils-2:4.13-7.fc39.x86_64 133/140 Verifying : sqlite-libs-3.42.0-6.fc39.x86_64 134/140 Verifying : systemd-libs-254~rc2-4.fc39.x86_64 135/140 Verifying : tpm2-tss-4.0.1-3.fc38.x86_64 136/140 Verifying : tzdata-2023c-1.fc39.noarch 137/140 Verifying : xz-libs-5.4.3-1.fc39.x86_64 138/140 Verifying : zchunk-libs-1.3.1-1.fc39.x86_64 139/140 Verifying : zlib-1.2.13-3.fc38.x86_64 140/140 Installed products updated. Installed: alternatives-1.24-1.fc39.x86_64 audit-libs-3.1.1-3.fc39.x86_64 basesystem-11-17.fc39.noarch bash-5.2.15-3.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.3-1.fc39.x86_64 coreutils-common-9.3-1.fc39.x86_64 crypto-policies-20230614-1.git5f3458e.fc39.noarch curl-8.1.2-1.fc39.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 dbus-libs-1:1.14.8-1.fc39.x86_64 dnf-data-4.16.1-3.fc39.noarch dnf-plugins-core-4.4.1-4.fc39.noarch elfutils-default-yama-scope-0.189-3.fc39.noarch elfutils-libelf-0.189-3.fc39.x86_64 elfutils-libs-0.189-3.fc39.x86_64 expat-2.5.0-2.fc38.x86_64 fedora-gpg-keys-39-0.3.noarch fedora-release-39-0.21.noarch fedora-release-common-39-0.21.noarch fedora-release-identity-basic-39-0.21.noarch fedora-repos-39-0.3.noarch fedora-repos-rawhide-39-0.3.noarch file-libs-5.44-4.fc39.x86_64 filesystem-3.18-4.fc39.x86_64 findutils-1:4.9.0-4.fc39.x86_64 fmt-10.0.0-2.fc39.x86_64 gawk-5.2.2-1.fc39.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 glib2-2.77.0-3.fc39.x86_64 glibc-2.37.9000-17.fc39.x86_64 glibc-common-2.37.9000-17.fc39.x86_64 glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnupg2-2.4.3-1.fc39.x86_64 gnutls-3.8.0-6.fc39.x86_64 gpgme-1.20.0-4.fc39.x86_64 grep-3.11-1.fc39.x86_64 ima-evm-utils-1.5-1.fc39.x86_64 json-c-0.16-4.fc38.x86_64 keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.21-1.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libarchive-3.6.1-5.fc39.x86_64 libassuan-2.5.6-1.fc39.x86_64 libattr-2.5.1-7.fc39.x86_64 libb2-0.98.1-8.fc38.x86_64 libblkid-2.39.1-2.fc39.x86_64 libbrotli-1.0.9-12.fc39.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-6.fc39.x86_64 libcom_err-1.47.0-1.fc39.x86_64 libcomps-0.1.19-2.fc39.x86_64 libcurl-8.1.2-1.fc39.x86_64 libdnf-0.70.1-4.fc39.x86_64 libdnf5-5.1.0-1.fc39.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libffi-3.4.4-3.fc39.x86_64 libfsverity-1.4-9.fc38.x86_64 libgcc-13.1.1-4.fc39.x86_64 libgcrypt-1.10.2-1.fc39.x86_64 libgomp-13.1.1-4.fc39.x86_64 libgpg-error-1.47-1.fc39.x86_64 libidn2-2.3.4-2.fc38.x86_64 libksba-1.6.4-1.fc39.x86_64 libmodulemd-2.15.0-4.fc39.x86_64 libmount-2.39.1-2.fc39.x86_64 libnghttp2-1.55.1-1.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpsl-0.21.2-3.fc39.x86_64 librepo-1.15.1-3.fc39.x86_64 libreport-filesystem-2.17.11-2.fc39.noarch libselinux-3.5-4.fc39.x86_64 libsemanage-3.5-3.fc39.x86_64 libsepol-3.5-1.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.39.1-2.fc39.x86_64 libsolv-0.7.24-6.fc39.x86_64 libssh-0.10.5-1.fc39.x86_64 libssh-config-0.10.5-1.fc39.noarch libstdc++-13.1.1-4.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.rc1.fc39.x86_64 libunistring-1.1-3.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libuuid-2.39.1-2.fc39.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.36-1.fc39.x86_64 libxml2-2.10.4-2.fc39.x86_64 libyaml-0.2.5-9.fc38.x86_64 libzstd-1.5.5-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 lz4-libs-1.9.4-3.fc39.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 mpfr-4.2.0-2.fc39.x86_64 ncurses-base-6.4-5.20230520.fc39.noarch ncurses-libs-6.4-5.20230520.fc39.x86_64 nettle-3.9.1-1.fc39.x86_64 npth-1.6-13.fc39.x86_64 openldap-2.6.4-3.fc39.x86_64 openssl-libs-1:3.0.8-2.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230614-1.fc39.noarch python-pip-wheel-23.1.2-2.fc39.noarch python3-3.12.0~b4-1.fc39.x86_64 python3-dateutil-1:2.8.2-9.fc39.noarch python3-dbus-1.3.2-3.fc39.x86_64 python3-distro-1.8.0-5.fc39.noarch python3-dnf-4.16.1-3.fc39.noarch python3-dnf-plugins-core-4.4.1-4.fc39.noarch python3-gpg-1.20.0-4.fc39.x86_64 python3-hawkey-0.70.1-4.fc39.x86_64 python3-libcomps-0.1.19-2.fc39.x86_64 python3-libdnf-0.70.1-4.fc39.x86_64 python3-libs-3.12.0~b4-1.fc39.x86_64 python3-rpm-4.18.91-7.fc39.x86_64 python3-six-1.16.0-11.fc39.noarch python3-systemd-235-4.fc39.x86_64 readline-8.2-3.fc38.x86_64 rpm-4.18.91-7.fc39.x86_64 rpm-build-libs-4.18.91-7.fc39.x86_64 rpm-libs-4.18.91-7.fc39.x86_64 rpm-sequoia-1.4.1-1.fc39.x86_64 rpm-sign-libs-4.18.91-7.fc39.x86_64 sed-4.8-12.fc38.x86_64 setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-7.fc39.x86_64 sqlite-libs-3.42.0-6.fc39.x86_64 systemd-libs-254~rc2-4.fc39.x86_64 tpm2-tss-4.0.1-3.fc38.x86_64 tzdata-2023c-1.fc39.noarch xz-libs-5.4.3-1.fc39.x86_64 zchunk-libs-1.3.1-1.fc39.x86_64 zlib-1.2.13-3.fc38.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1689765874.386041/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 1.9 MB/s | 1.3 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 14 MB/s | 70 MB 00:05 fedora 17 MB/s | 72 MB 00:04 Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing group/module packages: bash x86_64 5.2.15-3.fc38 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Running transaction test Transaction test succeeded. 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ca-certificates-2023.2.60-2.fc38.noarch 12/154 Verifying : coreutils-9.3-1.fc39.x86_64 13/154 Verifying : coreutils-common-9.3-1.fc39.x86_64 14/154 Verifying : cpio-2.14-2.fc39.x86_64 15/154 Verifying : cracklib-2.9.11-1.fc39.x86_64 16/154 Verifying : crypto-policies-20230614-1.git5f3458e.fc39.noarc 17/154 Verifying : curl-8.1.2-1.fc39.x86_64 18/154 Verifying : cyrus-sasl-lib-2.1.28-10.fc39.x86_64 19/154 Verifying : debugedit-5.0-9.fc39.x86_64 20/154 Verifying : diffutils-3.10-2.fc39.x86_64 21/154 Verifying : dwz-0.15-2.fc38.x86_64 22/154 Verifying : ed-1.19-2.fc38.x86_64 23/154 Verifying : efi-srpm-macros-5-8.fc39.noarch 24/154 Verifying : elfutils-0.189-3.fc39.x86_64 25/154 Verifying : elfutils-debuginfod-client-0.189-3.fc39.x86_64 26/154 Verifying : elfutils-default-yama-scope-0.189-3.fc39.noarch 27/154 Verifying : elfutils-libelf-0.189-3.fc39.x86_64 28/154 Verifying : elfutils-libs-0.189-3.fc39.x86_64 29/154 Verifying : fedora-gpg-keys-39-0.3.noarch 30/154 Verifying : fedora-release-39-0.21.noarch 31/154 Verifying : fedora-release-common-39-0.21.noarch 32/154 Verifying : fedora-release-identity-basic-39-0.21.noarch 33/154 Verifying : fedora-repos-39-0.3.noarch 34/154 Verifying : fedora-repos-rawhide-39-0.3.noarch 35/154 Verifying : file-5.44-4.fc39.x86_64 36/154 Verifying : file-libs-5.44-4.fc39.x86_64 37/154 Verifying : filesystem-3.18-4.fc39.x86_64 38/154 Verifying : findutils-1:4.9.0-4.fc39.x86_64 39/154 Verifying : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 40/154 Verifying : fpc-srpm-macros-1.3-7.fc38.noarch 41/154 Verifying : gawk-5.2.2-1.fc39.x86_64 42/154 Verifying : gdb-minimal-13.2-5.fc39.x86_64 43/154 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 44/154 Verifying : ghc-srpm-macros-1.6.1-1.fc38.noarch 45/154 Verifying : glibc-2.37.9000-17.fc39.x86_64 46/154 Verifying : glibc-common-2.37.9000-17.fc39.x86_64 47/154 Verifying : glibc-gconv-extra-2.37.9000-17.fc39.x86_64 48/154 Verifying : glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 49/154 Verifying : gmp-1:6.2.1-4.fc38.x86_64 50/154 Verifying : gnat-srpm-macros-6-2.fc38.noarch 51/154 Verifying : go-srpm-macros-3.2.0-3.fc39.noarch 52/154 Verifying : grep-3.11-1.fc39.x86_64 53/154 Verifying : gzip-1.12-3.fc38.x86_64 54/154 Verifying : info-7.0.3-2.fc39.x86_64 55/154 Verifying : jansson-2.13.1-6.fc38.x86_64 56/154 Verifying : kernel-srpm-macros-1.0-19.fc39.noarch 57/154 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 58/154 Verifying : krb5-libs-1.21-1.fc39.x86_64 59/154 Verifying : libacl-2.3.1-7.fc39.x86_64 60/154 Verifying : libarchive-3.6.1-5.fc39.x86_64 61/154 Verifying : libattr-2.5.1-7.fc39.x86_64 62/154 Verifying : libblkid-2.39.1-2.fc39.x86_64 63/154 Verifying : libbrotli-1.0.9-12.fc39.x86_64 64/154 Verifying : libcap-2.48-6.fc38.x86_64 65/154 Verifying : libcap-ng-0.8.3-6.fc39.x86_64 66/154 Verifying : libcom_err-1.47.0-1.fc39.x86_64 67/154 Verifying : libcurl-8.1.2-1.fc39.x86_64 68/154 Verifying : libdb-5.3.28-55.fc38.x86_64 69/154 Verifying : libeconf-0.4.0-5.fc38.x86_64 70/154 Verifying : libevent-2.1.12-8.fc38.x86_64 71/154 Verifying : libfdisk-2.39.1-2.fc39.x86_64 72/154 Verifying : libffi-3.4.4-3.fc39.x86_64 73/154 Verifying : libgcc-13.1.1-4.fc39.x86_64 74/154 Verifying : libgomp-13.1.1-4.fc39.x86_64 75/154 Verifying : libidn2-2.3.4-2.fc38.x86_64 76/154 Verifying : libmount-2.39.1-2.fc39.x86_64 77/154 Verifying : libnghttp2-1.55.1-1.fc39.x86_64 78/154 Verifying : libnsl2-2.0.0-5.fc38.x86_64 79/154 Verifying : libpkgconf-1.9.5-1.fc39.x86_64 80/154 Verifying : libpsl-0.21.2-3.fc39.x86_64 81/154 Verifying : libpwquality-1.4.5-5.fc39.x86_64 82/154 Verifying : libselinux-3.5-4.fc39.x86_64 83/154 Verifying : libsemanage-3.5-3.fc39.x86_64 84/154 Verifying : libsepol-3.5-1.fc39.x86_64 85/154 Verifying : libsigsegv-2.14-4.fc38.x86_64 86/154 Verifying : libsmartcols-2.39.1-2.fc39.x86_64 87/154 Verifying : libssh-0.10.5-1.fc39.x86_64 88/154 Verifying : libssh-config-0.10.5-1.fc39.noarch 89/154 Verifying : libstdc++-13.1.1-4.fc39.x86_64 90/154 Verifying : libtasn1-4.19.0-2.fc38.x86_64 91/154 Verifying : libtirpc-1.3.3-1.rc1.fc39.x86_64 92/154 Verifying : libunistring-1.1-3.fc38.x86_64 93/154 Verifying : libunistring1.0-1.0-1.fc38.x86_64 94/154 Verifying : libutempter-1.2.1-9.fc39.x86_64 95/154 Verifying : libuuid-2.39.1-2.fc39.x86_64 96/154 Verifying : libverto-0.3.2-5.fc38.x86_64 97/154 Verifying : libxcrypt-4.4.36-1.fc39.x86_64 98/154 Verifying : libxml2-2.10.4-2.fc39.x86_64 99/154 Verifying : libzstd-1.5.5-1.fc39.x86_64 100/154 Verifying : lua-libs-5.4.4-9.fc39.x86_64 101/154 Verifying : lua-srpm-macros-1-8.fc38.noarch 102/154 Verifying : lz4-libs-1.9.4-3.fc39.x86_64 103/154 Verifying : mpfr-4.2.0-2.fc39.x86_64 104/154 Verifying : ncurses-base-6.4-5.20230520.fc39.noarch 105/154 Verifying : ncurses-libs-6.4-5.20230520.fc39.x86_64 106/154 Verifying : ocaml-srpm-macros-8-1.fc39.noarch 107/154 Verifying : openblas-srpm-macros-2-13.fc38.noarch 108/154 Verifying : openldap-2.6.4-3.fc39.x86_64 109/154 Verifying : openssl-libs-1:3.0.8-2.fc39.x86_64 110/154 Verifying : p11-kit-0.24.1-6.fc38.x86_64 111/154 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 112/154 Verifying : package-notes-srpm-macros-0.5-8.fc39.noarch 113/154 Verifying : pam-1.5.3-1.fc39.x86_64 114/154 Verifying : pam-libs-1.5.3-1.fc39.x86_64 115/154 Verifying : patch-2.7.6-21.fc39.x86_64 116/154 Verifying : pcre2-10.42-1.fc38.1.x86_64 117/154 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 118/154 Verifying : perl-srpm-macros-1-50.fc39.noarch 119/154 Verifying : pkgconf-1.9.5-1.fc39.x86_64 120/154 Verifying : pkgconf-m4-1.9.5-1.fc39.noarch 121/154 Verifying : pkgconf-pkg-config-1.9.5-1.fc39.x86_64 122/154 Verifying : popt-1.19-2.fc38.x86_64 123/154 Verifying : publicsuffix-list-dafsa-20230614-1.fc39.noarch 124/154 Verifying : pyproject-srpm-macros-1.9.0-1.fc39.noarch 125/154 Verifying : python-srpm-macros-3.12-1.fc39.noarch 126/154 Verifying : qt5-srpm-macros-5.15.10-1.fc39.noarch 127/154 Verifying : qt6-srpm-macros-6.5.1-1.fc39.noarch 128/154 Verifying : readline-8.2-3.fc38.x86_64 129/154 Verifying : redhat-rpm-config-261-1.fc39.noarch 130/154 Verifying : rpm-4.18.91-7.fc39.x86_64 131/154 Verifying : rpm-build-4.18.91-7.fc39.x86_64 132/154 Verifying : rpm-build-libs-4.18.91-7.fc39.x86_64 133/154 Verifying : rpm-libs-4.18.91-7.fc39.x86_64 134/154 Verifying : rpm-sequoia-1.4.1-1.fc39.x86_64 135/154 Verifying : rpmautospec-rpm-macros-0.3.5-3.fc39.noarch 136/154 Verifying : rust-srpm-macros-24-2.fc39.noarch 137/154 Verifying : sed-4.8-12.fc38.x86_64 138/154 Verifying : setup-2.14.3-3.fc39.noarch 139/154 Verifying : shadow-utils-2:4.13-7.fc39.x86_64 140/154 Verifying : sqlite-libs-3.42.0-6.fc39.x86_64 141/154 Verifying : systemd-libs-254~rc2-4.fc39.x86_64 142/154 Verifying : tar-2:1.34-8.fc39.x86_64 143/154 Verifying : tzdata-2023c-1.fc39.noarch 144/154 Verifying : unzip-6.0-60.fc38.x86_64 145/154 Verifying : util-linux-2.39.1-2.fc39.x86_64 146/154 Verifying : util-linux-core-2.39.1-2.fc39.x86_64 147/154 Verifying : which-2.21-39.fc39.x86_64 148/154 Verifying : xxhash-libs-0.8.1-5.fc39.x86_64 149/154 Verifying : xz-5.4.3-1.fc39.x86_64 150/154 Verifying : xz-libs-5.4.3-1.fc39.x86_64 151/154 Verifying : zip-3.0-36.fc38.x86_64 152/154 Verifying : zlib-1.2.13-3.fc38.x86_64 153/154 Verifying : zstd-1.5.5-1.fc39.x86_64 154/154 Installed: alternatives-1.24-1.fc39.x86_64 ansible-srpm-macros-1-10.fc39.noarch audit-libs-3.1.1-3.fc39.x86_64 authselect-1.4.2-2.fc38.x86_64 authselect-libs-1.4.2-2.fc38.x86_64 basesystem-11-17.fc39.noarch bash-5.2.15-3.fc38.x86_64 binutils-2.40-9.fc39.x86_64 binutils-gold-2.40-9.fc39.x86_64 bzip2-1.0.8-13.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.3-1.fc39.x86_64 coreutils-common-9.3-1.fc39.x86_64 cpio-2.14-2.fc39.x86_64 cracklib-2.9.11-1.fc39.x86_64 crypto-policies-20230614-1.git5f3458e.fc39.noarch curl-8.1.2-1.fc39.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 debugedit-5.0-9.fc39.x86_64 diffutils-3.10-2.fc39.x86_64 dwz-0.15-2.fc38.x86_64 ed-1.19-2.fc38.x86_64 efi-srpm-macros-5-8.fc39.noarch elfutils-0.189-3.fc39.x86_64 elfutils-debuginfod-client-0.189-3.fc39.x86_64 elfutils-default-yama-scope-0.189-3.fc39.noarch elfutils-libelf-0.189-3.fc39.x86_64 elfutils-libs-0.189-3.fc39.x86_64 fedora-gpg-keys-39-0.3.noarch fedora-release-39-0.21.noarch fedora-release-common-39-0.21.noarch fedora-release-identity-basic-39-0.21.noarch fedora-repos-39-0.3.noarch fedora-repos-rawhide-39-0.3.noarch file-5.44-4.fc39.x86_64 file-libs-5.44-4.fc39.x86_64 filesystem-3.18-4.fc39.x86_64 findutils-1:4.9.0-4.fc39.x86_64 fonts-srpm-macros-1:2.0.5-11.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.2.2-1.fc39.x86_64 gdb-minimal-13.2-5.fc39.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37.9000-17.fc39.x86_64 glibc-common-2.37.9000-17.fc39.x86_64 glibc-gconv-extra-2.37.9000-17.fc39.x86_64 glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.2.0-3.fc39.noarch grep-3.11-1.fc39.x86_64 gzip-1.12-3.fc38.x86_64 info-7.0.3-2.fc39.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-19.fc39.noarch keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.21-1.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libarchive-3.6.1-5.fc39.x86_64 libattr-2.5.1-7.fc39.x86_64 libblkid-2.39.1-2.fc39.x86_64 libbrotli-1.0.9-12.fc39.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-6.fc39.x86_64 libcom_err-1.47.0-1.fc39.x86_64 libcurl-8.1.2-1.fc39.x86_64 libdb-5.3.28-55.fc38.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.39.1-2.fc39.x86_64 libffi-3.4.4-3.fc39.x86_64 libgcc-13.1.1-4.fc39.x86_64 libgomp-13.1.1-4.fc39.x86_64 libidn2-2.3.4-2.fc38.x86_64 libmount-2.39.1-2.fc39.x86_64 libnghttp2-1.55.1-1.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpkgconf-1.9.5-1.fc39.x86_64 libpsl-0.21.2-3.fc39.x86_64 libpwquality-1.4.5-5.fc39.x86_64 libselinux-3.5-4.fc39.x86_64 libsemanage-3.5-3.fc39.x86_64 libsepol-3.5-1.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.39.1-2.fc39.x86_64 libssh-0.10.5-1.fc39.x86_64 libssh-config-0.10.5-1.fc39.noarch libstdc++-13.1.1-4.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.rc1.fc39.x86_64 libunistring-1.1-3.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libutempter-1.2.1-9.fc39.x86_64 libuuid-2.39.1-2.fc39.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.36-1.fc39.x86_64 libxml2-2.10.4-2.fc39.x86_64 libzstd-1.5.5-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 lua-srpm-macros-1-8.fc38.noarch lz4-libs-1.9.4-3.fc39.x86_64 mpfr-4.2.0-2.fc39.x86_64 ncurses-base-6.4-5.20230520.fc39.noarch ncurses-libs-6.4-5.20230520.fc39.x86_64 ocaml-srpm-macros-8-1.fc39.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.4-3.fc39.x86_64 openssl-libs-1:3.0.8-2.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 package-notes-srpm-macros-0.5-8.fc39.noarch pam-1.5.3-1.fc39.x86_64 pam-libs-1.5.3-1.fc39.x86_64 patch-2.7.6-21.fc39.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-50.fc39.noarch pkgconf-1.9.5-1.fc39.x86_64 pkgconf-m4-1.9.5-1.fc39.noarch pkgconf-pkg-config-1.9.5-1.fc39.x86_64 popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230614-1.fc39.noarch pyproject-srpm-macros-1.9.0-1.fc39.noarch python-srpm-macros-3.12-1.fc39.noarch qt5-srpm-macros-5.15.10-1.fc39.noarch qt6-srpm-macros-6.5.1-1.fc39.noarch readline-8.2-3.fc38.x86_64 redhat-rpm-config-261-1.fc39.noarch rpm-4.18.91-7.fc39.x86_64 rpm-build-4.18.91-7.fc39.x86_64 rpm-build-libs-4.18.91-7.fc39.x86_64 rpm-libs-4.18.91-7.fc39.x86_64 rpm-sequoia-1.4.1-1.fc39.x86_64 rpmautospec-rpm-macros-0.3.5-3.fc39.noarch rust-srpm-macros-24-2.fc39.noarch sed-4.8-12.fc38.x86_64 setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-7.fc39.x86_64 sqlite-libs-3.42.0-6.fc39.x86_64 systemd-libs-254~rc2-4.fc39.x86_64 tar-2:1.34-8.fc39.x86_64 tzdata-2023c-1.fc39.noarch unzip-6.0-60.fc38.x86_64 util-linux-2.39.1-2.fc39.x86_64 util-linux-core-2.39.1-2.fc39.x86_64 which-2.21-39.fc39.x86_64 xxhash-libs-0.8.1-5.fc39.x86_64 xz-5.4.3-1.fc39.x86_64 xz-libs-5.4.3-1.fc39.x86_64 zip-3.0-36.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 zstd-1.5.5-1.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: libattr-2.5.1-7.fc39.x86_64 pkgconf-pkg-config-1.9.5-1.fc39.x86_64 tar-1.34-8.fc39.x86_64 libdb-5.3.28-55.fc38.x86_64 elfutils-libelf-0.189-3.fc39.x86_64 bash-5.2.15-3.fc38.x86_64 libnghttp2-1.55.1-1.fc39.x86_64 patch-2.7.6-21.fc39.x86_64 lua-srpm-macros-1-8.fc38.noarch qt6-srpm-macros-6.5.1-1.fc39.noarch authselect-libs-1.4.2-2.fc38.x86_64 rust-srpm-macros-24-2.fc39.noarch krb5-libs-1.21-1.fc39.x86_64 libselinux-3.5-4.fc39.x86_64 rpm-build-libs-4.18.91-7.fc39.x86_64 zlib-1.2.13-3.fc38.x86_64 qt5-srpm-macros-5.15.10-1.fc39.noarch util-linux-2.39.1-2.fc39.x86_64 pam-libs-1.5.3-1.fc39.x86_64 ncurses-base-6.4-5.20230520.fc39.noarch keyutils-libs-1.6.1-6.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libmount-2.39.1-2.fc39.x86_64 libxml2-2.10.4-2.fc39.x86_64 rpmautospec-rpm-macros-0.3.5-3.fc39.noarch popt-1.19-2.fc38.x86_64 util-linux-core-2.39.1-2.fc39.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 libbrotli-1.0.9-12.fc39.x86_64 fonts-srpm-macros-2.0.5-11.fc38.noarch glibc-gconv-extra-2.37.9000-17.fc39.x86_64 ncurses-libs-6.4-5.20230520.fc39.x86_64 dwz-0.15-2.fc38.x86_64 binutils-2.40-9.fc39.x86_64 rpm-4.18.91-7.fc39.x86_64 gawk-5.2.2-1.fc39.x86_64 xz-5.4.3-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 libunistring-1.1-3.fc38.x86_64 ed-1.19-2.fc38.x86_64 libuuid-2.39.1-2.fc39.x86_64 gmp-6.2.1-4.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch libgcc-13.1.1-4.fc39.x86_64 grep-3.11-1.fc39.x86_64 libstdc++-13.1.1-4.fc39.x86_64 libcap-2.48-6.fc38.x86_64 libacl-2.3.1-7.fc39.x86_64 libsepol-3.5-1.fc39.x86_64 rpm-build-4.18.91-7.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 package-notes-srpm-macros-0.5-8.fc39.noarch fedora-gpg-keys-39-0.3.noarch libblkid-2.39.1-2.fc39.x86_64 bzip2-1.0.8-13.fc38.x86_64 glibc-common-2.37.9000-17.fc39.x86_64 unzip-6.0-60.fc38.x86_64 authselect-1.4.2-2.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch filesystem-3.18-4.fc39.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 elfutils-0.189-3.fc39.x86_64 fpc-srpm-macros-1.3-7.fc38.noarch which-2.21-39.fc39.x86_64 libzstd-1.5.5-1.fc39.x86_64 findutils-4.9.0-4.fc39.x86_64 libpsl-0.21.2-3.fc39.x86_64 elfutils-libs-0.189-3.fc39.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch fedora-release-39-0.21.noarch libpwquality-1.4.5-5.fc39.x86_64 libcurl-8.1.2-1.fc39.x86_64 kernel-srpm-macros-1.0-19.fc39.noarch zip-3.0-36.fc38.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libssh-config-0.10.5-1.fc39.noarch libfdisk-2.39.1-2.fc39.x86_64 diffutils-3.10-2.fc39.x86_64 fedora-repos-rawhide-39-0.3.noarch ca-certificates-2023.2.60-2.fc38.noarch ansible-srpm-macros-1-10.fc39.noarch libunistring1.0-1.0-1.fc38.x86_64 libcom_err-1.47.0-1.fc39.x86_64 perl-srpm-macros-1-50.fc39.noarch libssh-0.10.5-1.fc39.x86_64 systemd-libs-254~rc2-4.fc39.x86_64 pcre2-10.42-1.fc38.1.x86_64 glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 glibc-2.37.9000-17.fc39.x86_64 pam-1.5.3-1.fc39.x86_64 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publicsuffix-list-dafsa-20230614-1.fc39.noarch Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/ProDy-2.4.0-4.fc39.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1689765874.386041/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1689765874.386041/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1689765874.386041/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-fozzzbum/ProDy/ProDy.spec) Config(child) 3 minutes 13 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/ProDy-2.4.0-4.fc39.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1689765874.386041 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/ProDy-2.4.0-4.fc39.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1689765874.386041/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1689765874.386041/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1689765874.386041/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 8.3 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 16 kB/s | 3.8 kB 00:00 fedora 544 kB/s | 23 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for ProDy-2.4.0-4.fc39.src.rpm Start: build setup for ProDy-2.4.0-4.fc39.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/ProDy-2.4.0-4.fc39.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 9.4 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 18 kB/s | 3.8 kB 00:00 fedora 2.3 kB/s | 23 kB 00:10 Dependencies resolved. =============================================================================================================================================== Package Arch Version Repository Size =============================================================================================================================================== Installing: gcc x86_64 13.1.1-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 34 M gcc-c++ x86_64 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xorg-x11-fonts-ISO8859-1-100dpi noarch 7.5-35.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 M Transaction Summary =============================================================================================================================================== Install 179 Packages Total download size: 204 M Installed size: 782 M Downloading Packages: (1/179): graphite2-1.3.14-11.fc39.x86_64.rpm 381 kB/s | 96 kB 00:00 (2/179): python3-contourpy-1.1.0-1.fc39.x86_64. 765 kB/s | 229 kB 00:00 (3/179): python3-fonttools-4.41.0-1.fc39.x86_64 5.5 MB/s | 2.6 MB 00:00 (4/179): python3-matplotlib-data-3.7.2-1.fc39.n 2.2 MB/s | 526 kB 00:00 (5/179): python3-matplotlib-3.7.2-1.fc39.x86_64 11 MB/s | 4.1 MB 00:00 (6/179): python3-matplotlib-data-fonts-3.7.2-1. 11 MB/s | 2.3 MB 00:00 (7/179): python3-matplotlib-tk-3.7.2-1.fc39.x86 348 kB/s | 52 kB 00:00 (8/179): python3-pygraphviz-1.11-2.fc39.x86_64. 1.9 MB/s | 140 kB 00:00 (9/179): abattis-cantarell-vf-fonts-0.301-9.fc3 386 kB/s 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urw-base35-gothic-fonts-20200910-16. 2.3 MB/s | 643 kB 00:00 (169/179): urw-base35-c059-fonts-20200910-16.fc 1.1 MB/s | 875 kB 00:00 (170/179): urw-base35-nimbus-mono-ps-fonts-2020 2.6 MB/s | 796 kB 00:00 (171/179): python3-libs-3.12.0~b4-1.fc39.x86_64 1.4 MB/s | 8.9 MB 00:06 (172/179): urw-base35-nimbus-sans-fonts-2020091 3.0 MB/s | 1.3 MB 00:00 (173/179): urw-base35-standard-symbols-ps-fonts 410 kB/s | 42 kB 00:00 (174/179): urw-base35-nimbus-roman-fonts-202009 1.3 MB/s | 857 kB 00:00 (175/179): urw-base35-z003-fonts-20200910-16.fc 1.7 MB/s | 276 kB 00:00 (176/179): xml-common-0.6.3-60.fc38.noarch.rpm 305 kB/s | 31 kB 00:00 (177/179): urw-base35-p052-fonts-20200910-16.fc 988 kB/s | 974 kB 00:00 (178/179): xorg-x11-fonts-ISO8859-1-100dpi-7.5- 3.0 MB/s | 1.0 MB 00:00 (179/179): wise2-2.4.1-17.fc38.x86_64.rpm 855 kB/s | 973 kB 00:01 -------------------------------------------------------------------------------- Total 11 MB/s | 204 MB 00:18 Running transaction check Transaction check 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python3-numpy-f2py-1:1.24.3-2.fc39.x86_64 142/179 Verifying : python3-olefile-0.46-20.fc39.noarch 143/179 Verifying : python3-packaging-23.1-3.fc39.noarch 144/179 Verifying : python3-pillow-10.0.0-1.fc39.x86_64 145/179 Verifying : python3-pillow-tk-10.0.0-1.fc39.x86_64 146/179 Verifying : python3-protobuf-3.19.6-5.fc39.x86_64 147/179 Verifying : python3-psycopg2-2.9.6-2.fc39.x86_64 148/179 Verifying : python3-pyparsing-3.0.9-10.fc39.noarch 149/179 Verifying : python3-pysocks-1.7.1-19.fc39.noarch 150/179 Verifying : python3-rdflib-6.2.0-3.fc39.noarch 151/179 Verifying : python3-reportlab-4.0.4-2.fc39.noarch 152/179 Verifying : python3-rpm-generators-14-6.fc39.noarch 153/179 Verifying : python3-rpm-macros-3.12-1.fc39.noarch 154/179 Verifying : python3-setuptools-67.7.2-5.fc39.noarch 155/179 Verifying : python3-six-1.16.0-11.fc39.noarch 156/179 Verifying : python3-tkinter-3.12.0~b4-1.fc39.x86_64 157/179 Verifying : python3-urllib3+socks-1.26.16-1.fc39.noarch 158/179 Verifying : python3-urllib3-1.26.16-1.fc39.noarch 159/179 Verifying : rav1e-libs-0.6.6-1.fc39.x86_64 160/179 Verifying : shared-mime-info-2.2-3.fc38.x86_64 161/179 Verifying : svt-av1-libs-1.4.1-2.fc38.x86_64 162/179 Verifying : tcl-1:8.6.12-4.fc39.x86_64 163/179 Verifying : tk-1:8.6.12-4.fc38.x86_64 164/179 Verifying : urw-base35-bookman-fonts-20200910-16.fc38.noarch 165/179 Verifying : urw-base35-c059-fonts-20200910-16.fc38.noarch 166/179 Verifying : urw-base35-d050000l-fonts-20200910-16.fc38.noarc 167/179 Verifying : urw-base35-fonts-20200910-16.fc38.noarch 168/179 Verifying : urw-base35-fonts-common-20200910-16.fc38.noarch 169/179 Verifying : urw-base35-gothic-fonts-20200910-16.fc38.noarch 170/179 Verifying : urw-base35-nimbus-mono-ps-fonts-20200910-16.fc38 171/179 Verifying : urw-base35-nimbus-roman-fonts-20200910-16.fc38.n 172/179 Verifying : urw-base35-nimbus-sans-fonts-20200910-16.fc38.no 173/179 Verifying : urw-base35-p052-fonts-20200910-16.fc38.noarch 174/179 Verifying : urw-base35-standard-symbols-ps-fonts-20200910-16 175/179 Verifying : urw-base35-z003-fonts-20200910-16.fc38.noarch 176/179 Verifying : wise2-2.4.1-17.fc38.x86_64 177/179 Verifying : xml-common-0.6.3-60.fc38.noarch 178/179 Verifying : xorg-x11-fonts-ISO8859-1-100dpi-7.5-35.fc38.noar 179/179 Installed: abattis-cantarell-vf-fonts-0.301-9.fc38.noarch adobe-mappings-cmap-20230118-1.fc38.noarch adobe-mappings-cmap-deprecated-20230118-1.fc38.noarch adobe-mappings-pdf-20190401-3.fc38.noarch annobin-docs-12.21-1.fc39.noarch annobin-plugin-gcc-12.21-1.fc39.x86_64 avahi-libs-0.8-23.fc39.x86_64 cairo-1.17.8-4.fc39.x86_64 cairo-gobject-1.17.8-4.fc39.x86_64 cpp-13.1.1-4.fc39.x86_64 crypto-policies-scripts-20230614-1.git5f3458e.fc39.noarch cups-libs-1:2.4.6-1.fc39.x86_64 dbus-libs-1:1.14.8-1.fc39.x86_64 default-fonts-core-sans-4.0-1.fc39.noarch dejavu-sans-fonts-2.37-20.fc38.noarch expat-2.5.0-2.fc38.x86_64 flex-2.6.4-12.fc38.x86_64 flexiblas-3.3.1-3.fc39.x86_64 flexiblas-netlib-3.3.1-3.fc39.x86_64 flexiblas-openblas-openmp-3.3.1-3.fc39.x86_64 fontconfig-2.14.2-3.fc39.x86_64 fonts-filesystem-1:2.0.5-11.fc38.noarch freetype-2.13.1-1.fc39.x86_64 fribidi-1.0.13-1.fc39.x86_64 gc-8.2.2-3.fc38.x86_64 gcc-13.1.1-4.fc39.x86_64 gcc-c++-13.1.1-4.fc39.x86_64 gcc-plugin-annobin-13.1.1-4.fc39.x86_64 gd-2.3.3-11.fc39.x86_64 gdk-pixbuf2-2.42.10-2.fc38.x86_64 glib2-2.77.0-3.fc39.x86_64 glibc-devel-2.37.9000-17.fc39.x86_64 glibc-headers-x86-2.37.9000-17.fc39.noarch gnutls-3.8.0-6.fc39.x86_64 google-droid-sans-fonts-20200215-15.fc39.noarch google-noto-fonts-common-20230601-3.fc39.noarch google-noto-sans-vf-fonts-20230601-3.fc39.noarch graphite2-1.3.14-11.fc39.x86_64 graphviz-8.1.0-4.fc39.x86_64 gts-0.7.6-45.20121130.fc39.x86_64 guile22-2.2.7-8.fc39.x86_64 harfbuzz-8.0.1-2.fc39.x86_64 highway-1.0.4-2.fc39.x86_64 jbig2dec-libs-0.19-8.fc38.x86_64 jbigkit-libs-2.1-25.fc38.x86_64 kernel-headers-6.5.0-0.rc2.git0.1.fc39.x86_64 lasi-1.1.3-10.fc38.x86_64 lcms2-2.15-1.fc39.x86_64 libICE-1.0.10-10.fc38.x86_64 libSM-1.2.3-12.fc38.x86_64 libX11-1.8.6-1.fc39.x86_64 libX11-common-1.8.6-1.fc39.noarch libXau-1.0.11-2.fc38.x86_64 libXext-1.3.5-2.fc38.x86_64 libXft-2.3.8-2.fc39.x86_64 libXpm-3.5.15-3.fc38.x86_64 libXrender-0.9.11-2.fc38.x86_64 libXt-1.2.1-4.fc38.x86_64 libaom-3.6.1-1.fc39.x86_64 libavif-0.11.1-9.fc39.x86_64 libb2-0.98.1-8.fc38.x86_64 libdatrie-0.2.13-6.fc39.x86_64 libdav1d-1.2.1-1.fc39.x86_64 libfontenc-1.1.6-2.fc38.x86_64 libgfortran-13.1.1-4.fc39.x86_64 libgs-10.01.2-1.fc39.x86_64 libijs-0.35-17.fc38.x86_64 libimagequant-4.0.1-4.fc39.x86_64 libjpeg-turbo-2.1.4-2.fc38.x86_64 libjxl-1:0.8.2-1.fc39.x86_64 libmpc-1.3.1-2.fc38.x86_64 libpaper-1:2.1.0-1.fc39.x86_64 libpng-2:1.6.37-14.fc38.x86_64 libpq-15.0-3.fc38.x86_64 libqhull_r-1:7.2.1-12.fc38.x86_64 libquadmath-13.1.1-4.fc39.x86_64 libraqm-0.8.0-4.fc38.x86_64 librsvg2-2.56.90-1.fc39.x86_64 libstdc++-devel-13.1.1-4.fc39.x86_64 libthai-0.1.29-5.fc39.x86_64 libtiff-4.4.0-5.fc38.x86_64 libtool-ltdl-2.4.7-6.fc38.x86_64 libvmaf-2.3.0-5.fc38.x86_64 libwebp-1.3.1-1.fc39.x86_64 libxcb-1.13.1-11.fc38.x86_64 libxcrypt-devel-4.4.36-1.fc39.x86_64 libxslt-1.1.38-2.fc39.x86_64 m4-1.4.19-4.fc37.x86_64 make-1:4.4.1-1.fc39.x86_64 mariadb-connector-c-3.3.5-1.fc39.x86_64 mariadb-connector-c-config-3.3.5-1.fc39.noarch mkfontscale-1.2.2-3.fc38.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 mysql-connector-python3-8.0.21-9.fc39.noarch netpbm-11.02.00-1.fc39.x86_64 nettle-3.9.1-1.fc39.x86_64 nspr-4.35.0-9.fc39.x86_64 nss-3.91.0-1.fc39.x86_64 nss-softokn-3.91.0-1.fc39.x86_64 nss-softokn-freebl-3.91.0-1.fc39.x86_64 nss-sysinit-3.91.0-1.fc39.x86_64 nss-util-3.91.0-1.fc39.x86_64 openblas-0.3.21-4.fc38.x86_64 openblas-openmp-0.3.21-4.fc38.x86_64 openjpeg2-2.5.0-3.fc38.x86_64 pango-1.50.14-1.fc39.x86_64 pixman-0.42.2-1.fc39.x86_64 poppler-23.02.0-2.fc39.x86_64 poppler-data-0.4.11-4.fc38.noarch poppler-glib-23.02.0-2.fc39.x86_64 protobuf-3.19.6-5.fc39.x86_64 pyproject-rpm-macros-1.9.0-1.fc39.noarch python-pip-wheel-23.1.2-2.fc39.noarch python-rpm-macros-3.12-1.fc39.noarch python3-3.12.0~b4-1.fc39.x86_64 python3-appdirs-1.4.4-10.fc39.noarch python3-biopython-1.81-3.fc39.x86_64 python3-brotli-1.0.9-12.fc39.x86_64 python3-cairo-1.24.0-1.fc39.x86_64 python3-contourpy-1.1.0-1.fc39.x86_64 python3-cycler-0.11.0-8.fc39.noarch python3-dateutil-1:2.8.2-9.fc39.noarch python3-devel-3.12.0~b4-1.fc39.x86_64 python3-fonttools-4.41.0-1.fc39.x86_64 python3-fs-2.4.16-3.fc39.noarch python3-idna-3.4-3.fc39.noarch python3-isodate-0.6.1-8.fc39.noarch python3-kiwisolver-1.4.4-8.fc39.x86_64 python3-libs-3.12.0~b4-1.fc39.x86_64 python3-lxml-4.9.2-8.fc39.x86_64 python3-matplotlib-3.7.2-1.fc39.x86_64 python3-matplotlib-data-3.7.2-1.fc39.noarch python3-matplotlib-data-fonts-3.7.2-1.fc39.noarch python3-matplotlib-tk-3.7.2-1.fc39.x86_64 python3-munkres-1.1.2-15.fc39.noarch python3-mysqlclient-2.1.1-4.fc39.x86_64 python3-networkx-3.1-2.fc39~bootstrap.noarch python3-nose-1.3.7-41.fc39.noarch python3-numpy-1:1.24.3-2.fc39.x86_64 python3-numpy-f2py-1:1.24.3-2.fc39.x86_64 python3-olefile-0.46-20.fc39.noarch python3-packaging-23.1-3.fc39.noarch python3-pillow-10.0.0-1.fc39.x86_64 python3-pillow-tk-10.0.0-1.fc39.x86_64 python3-protobuf-3.19.6-5.fc39.x86_64 python3-psycopg2-2.9.6-2.fc39.x86_64 python3-pygraphviz-1.11-2.fc39.x86_64 python3-pyparsing-3.0.9-10.fc39.noarch python3-pysocks-1.7.1-19.fc39.noarch python3-rdflib-6.2.0-3.fc39.noarch python3-reportlab-4.0.4-2.fc39.noarch python3-rpm-generators-14-6.fc39.noarch python3-rpm-macros-3.12-1.fc39.noarch python3-scipy-1.11.1-1.fc39.x86_64 python3-setuptools-67.7.2-5.fc39.noarch python3-six-1.16.0-11.fc39.noarch python3-tkinter-3.12.0~b4-1.fc39.x86_64 python3-urllib3-1.26.16-1.fc39.noarch python3-urllib3+socks-1.26.16-1.fc39.noarch rav1e-libs-0.6.6-1.fc39.x86_64 shared-mime-info-2.2-3.fc38.x86_64 svt-av1-libs-1.4.1-2.fc38.x86_64 tcl-1:8.6.12-4.fc39.x86_64 tk-1:8.6.12-4.fc38.x86_64 urw-base35-bookman-fonts-20200910-16.fc38.noarch urw-base35-c059-fonts-20200910-16.fc38.noarch urw-base35-d050000l-fonts-20200910-16.fc38.noarch urw-base35-fonts-20200910-16.fc38.noarch urw-base35-fonts-common-20200910-16.fc38.noarch urw-base35-gothic-fonts-20200910-16.fc38.noarch urw-base35-nimbus-mono-ps-fonts-20200910-16.fc38.noarch urw-base35-nimbus-roman-fonts-20200910-16.fc38.noarch urw-base35-nimbus-sans-fonts-20200910-16.fc38.noarch urw-base35-p052-fonts-20200910-16.fc38.noarch urw-base35-standard-symbols-ps-fonts-20200910-16.fc38.noarch urw-base35-z003-fonts-20200910-16.fc38.noarch wise2-2.4.1-17.fc38.x86_64 xml-common-0.6.3-60.fc38.noarch xorg-x11-fonts-ISO8859-1-100dpi-7.5-35.fc38.noarch Complete! Finish: build setup for ProDy-2.4.0-4.fc39.src.rpm Start: rpmbuild ProDy-2.4.0-4.fc39.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689724800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.l2pfjw + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf ProDy-2.4.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ProDy-2.4.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd ProDy-2.4.0 + /usr/bin/mkdir -p SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/ProDy-change_requires.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find prody/proteins/ccealign -name '*.h' -exec chmod 0644 '{}' ';' + find prody/proteins/ccealign -name '*.cpp' -exec chmod 0644 '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.3JnRAN + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-x86_64-cpython-312 creating build/lib.linux-x86_64-cpython-312/prody copying prody/__init__.py -> build/lib.linux-x86_64-cpython-312/prody creating build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/subset.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/selection.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/select.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/segment.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/residue.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/pointer.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/nbexclusion.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/improper.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/hierview.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/functions.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/flags.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/fields.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/donor.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/dihedral.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/crossterm.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/chain.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/bond.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/atommap.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/atomic.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/atomgroup.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/atom.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/angle.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/acceptor.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/atomic creating build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/uniprot.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/quartataweb.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/pfam.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/goa.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/dali.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/cath.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/database creating build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/vmdfile.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/signature.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/sampling.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/rtb.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/plotting.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/perturb.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/pca.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/nmdfile.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/nma.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/modeset.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/mode.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/mechstiff.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/imanm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/heatmapper.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/gnm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/gamma.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/functions.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/exgnm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/exanm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/essa.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/entropy.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/editing.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/compare.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/clustenm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/bbenm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/anm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/analysis.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/adaptive.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics creating build/lib.linux-x86_64-cpython-312/prody/ensemble copying prody/ensemble/pdbensemble.py -> build/lib.linux-x86_64-cpython-312/prody/ensemble copying prody/ensemble/functions.py -> build/lib.linux-x86_64-cpython-312/prody/ensemble copying prody/ensemble/ensemble.py -> build/lib.linux-x86_64-cpython-312/prody/ensemble copying prody/ensemble/conformation.py -> build/lib.linux-x86_64-cpython-312/prody/ensemble copying prody/ensemble/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/ensemble creating build/lib.linux-x86_64-cpython-312/prody/kdtree copying prody/kdtree/kdtree.py -> build/lib.linux-x86_64-cpython-312/prody/kdtree copying prody/kdtree/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/kdtree creating build/lib.linux-x86_64-cpython-312/prody/measure copying prody/measure/transform.py -> build/lib.linux-x86_64-cpython-312/prody/measure copying prody/measure/measure.py -> build/lib.linux-x86_64-cpython-312/prody/measure copying prody/measure/contacts.py -> build/lib.linux-x86_64-cpython-312/prody/measure copying prody/measure/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/measure creating build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/wwpdb.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/stride.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/starfile.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/pdbfile.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/pdbclusters.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/localpdb.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/header.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/functions.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/emdfile.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/dssp.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/compare.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/cifheader.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/ciffile.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/blastpdb.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/proteins creating build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/sequence.py -> build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/plotting.py -> build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/msafile.py -> build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/msa.py -> build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/analysis.py -> build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/sequence creating build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/trajfile.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/trajectory.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/trajbase.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/psffile.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/frame.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/dcdfile.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory creating build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/straw.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/norm.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/hic.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/functions.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/cluster.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin creating build/lib.linux-x86_64-cpython-312/prody/compounds copying prody/compounds/pdbligands.py -> build/lib.linux-x86_64-cpython-312/prody/compounds copying prody/compounds/functions.py -> build/lib.linux-x86_64-cpython-312/prody/compounds copying prody/compounds/ccd.py -> build/lib.linux-x86_64-cpython-312/prody/compounds copying prody/compounds/bird.py -> build/lib.linux-x86_64-cpython-312/prody/compounds copying prody/compounds/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/compounds creating build/lib.linux-x86_64-cpython-312/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> build/lib.linux-x86_64-cpython-312/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/domain_decomposition creating build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/settings.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/seqtools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/pathtools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/misctools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/logger.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/legacy.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/laptools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/eigtools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/drawtools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/doctools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/checkers.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/catchall.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/TreeConstruction.py -> build/lib.linux-x86_64-cpython-312/prody/utilities creating build/lib.linux-x86_64-cpython-312/prody/apps copying prody/apps/apptools.py -> build/lib.linux-x86_64-cpython-312/prody/apps copying prody/apps/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/apps creating build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps creating build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps creating build/lib.linux-x86_64-cpython-312/prody/tests copying prody/tests/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests creating build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps creating build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_select.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic creating build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles creating build/lib.linux-x86_64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> build/lib.linux-x86_64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> build/lib.linux-x86_64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> build/lib.linux-x86_64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> build/lib.linux-x86_64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/dynamics creating build/lib.linux-x86_64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-x86_64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> build/lib.linux-x86_64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-x86_64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-x86_64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/ensemble creating build/lib.linux-x86_64-cpython-312/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-x86_64-cpython-312/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/kdtree creating build/lib.linux-x86_64-cpython-312/prody/tests/measure copying prody/tests/measure/test_transform.py -> build/lib.linux-x86_64-cpython-312/prody/tests/measure copying prody/tests/measure/test_measure.py -> build/lib.linux-x86_64-cpython-312/prody/tests/measure copying prody/tests/measure/test_contacts.py -> build/lib.linux-x86_64-cpython-312/prody/tests/measure copying prody/tests/measure/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/measure creating build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_header.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins creating build/lib.linux-x86_64-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> build/lib.linux-x86_64-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> build/lib.linux-x86_64-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> build/lib.linux-x86_64-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> build/lib.linux-x86_64-cpython-312/prody/tests/sequence copying prody/tests/sequence/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/sequence creating build/lib.linux-x86_64-cpython-312/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> build/lib.linux-x86_64-cpython-312/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-x86_64-cpython-312/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/trajectory creating build/lib.linux-x86_64-cpython-312/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-x86_64-cpython-312/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> build/lib.linux-x86_64-cpython-312/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> build/lib.linux-x86_64-cpython-312/prody/tests/utilities copying prody/tests/utilities/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/utilities creating build/lib.linux-x86_64-cpython-312/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> build/lib.linux-x86_64-cpython-312/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> build/lib.linux-x86_64-cpython-312/prody/utilities/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build/temp.linux-x86_64-cpython-312 creating build/temp.linux-x86_64-cpython-312/prody creating build/temp.linux-x86_64-cpython-312/prody/dynamics gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/rtbtools.c -o build/temp.linux-x86_64-cpython-312/prody/dynamics/rtbtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/dynamics/rtbtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/dynamics/rtbtools.cpython-312-x86_64-linux-gnu.so building 'prody.dynamics.smtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/smtools.c -o build/temp.linux-x86_64-cpython-312/prody/dynamics/smtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/dynamics/smtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/dynamics/smtools.cpython-312-x86_64-linux-gnu.so building 'prody.sequence.msatools' extension creating build/temp.linux-x86_64-cpython-312/prody/sequence gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msatools.c -o build/temp.linux-x86_64-cpython-312/prody/sequence/msatools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/sequence/msatools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/sequence/msatools.cpython-312-x86_64-linux-gnu.so building 'prody.sequence.msaio' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msaio.c -o build/temp.linux-x86_64-cpython-312/prody/sequence/msaio.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/sequence/msaio.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/sequence/msaio.cpython-312-x86_64-linux-gnu.so building 'prody.sequence.seqtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/seqtools.c -o build/temp.linux-x86_64-cpython-312/prody/sequence/seqtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/sequence/seqtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/sequence/seqtools.cpython-312-x86_64-linux-gnu.so building 'prody.kdtree._CKDTree' extension creating build/temp.linux-x86_64-cpython-312/prody/kdtree gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTree.c -o build/temp.linux-x86_64-cpython-312/prody/kdtree/KDTree.o gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-x86_64-cpython-312/prody/kdtree/KDTreemodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/kdtree/KDTree.o build/temp.linux-x86_64-cpython-312/prody/kdtree/KDTreemodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/kdtree/_CKDTree.cpython-312-x86_64-linux-gnu.so building 'prody.proteins.ccealign' extension creating build/temp.linux-x86_64-cpython-312/prody/proteins creating build/temp.linux-x86_64-cpython-312/prody/proteins/ccealign gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Iprody/utilities/tnt -I/usr/include/python3.12 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-x86_64-cpython-312/prody/proteins/ccealign/ccealignmodule.o In file included from prody/utilities/tnt/tnt.h:41, from prody/proteins/ccealign/ccealignmodule.h:43, from prody/proteins/ccealign/ccealignmodule.cpp:38: In member function ‘TNT::Array1D::set_(double*, double*, double const&)’, inlined from ‘TNT::Array1D::Array1D(int, double const&)’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest(cePoint*, cePoint*, afp**, int, int, int)’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ~~~^~~ g++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/proteins/ccealign.cpython-312-x86_64-linux-gnu.so In member function ‘set_’, inlined from ‘__ct ’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘__builtin_memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ^ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.uCLUYF + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64 --prefix /usr running install /usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer, pypa/build or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64 creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12 creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-312/prody/tests/utilities/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-312/prody/tests/utilities/test_checkers.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-312/prody/tests/utilities/test_misctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-312/prody/tests/utilities/test_pathtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory copying build/lib.linux-x86_64-cpython-312/prody/tests/trajectory/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory copying build/lib.linux-x86_64-cpython-312/prody/tests/trajectory/test_dcdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory copying build/lib.linux-x86_64-cpython-312/prody/tests/trajectory/test_frame.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-312/prody/tests/sequence/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-312/prody/tests/sequence/test_analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-312/prody/tests/sequence/test_msa.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-312/prody/tests/sequence/test_msafile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-312/prody/tests/sequence/test_sequence.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_ciffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_dssp.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_header.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_localpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_pdbfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_wwpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-312/prody/tests/measure/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-312/prody/tests/measure/test_contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-312/prody/tests/measure/test_measure.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-312/prody/tests/measure/test_transform.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/kdtree copying build/lib.linux-x86_64-cpython-312/prody/tests/kdtree/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/kdtree copying build/lib.linux-x86_64-cpython-312/prody/tests/kdtree/test_kdtree.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/kdtree creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-312/prody/tests/ensemble/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-312/prody/tests/ensemble/test_conformation.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-312/prody/tests/ensemble/test_ensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-312/prody/tests/ensemble/test_functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-312/prody/tests/ensemble/test_pdbensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-312/prody/tests/dynamics/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-312/prody/tests/dynamics/test_editing.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-312/prody/tests/dynamics/test_enms.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-312/prody/tests/dynamics/test_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-312/prody/tests/dynamics/test_signature.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/mmcif_6yfy.cif -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/mmcif_6zu5.cif -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_Cys_knot.fasta -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_Cys_knot.slx -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_Cys_knot.sth -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/xmlSTI.xml -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/dcd2k39_truncated.dcd -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/anm1ubi_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/exanm2nwl_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pca2k39_cov.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/rtb2gb1_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/rtb2gb1_project.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/anm1ubi_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/anm1ubi_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/commute1ubi.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/exanm2nwl_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/exanm2nwl_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/gnm1ubi_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/gnm1ubi_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/hit1ubi.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_Cys_knot_di.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pca2k39_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pca2k39_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1ejg.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1r19_dssp.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1ubi.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1ubi_ca.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb2k39_ca.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb2k39_truncated.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb2nwl-opm.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb3hsy.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb3mht.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb3o21.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb3p3w.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdbRTER.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_atomic.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_atommap.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_fragment.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_hierview.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_select.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_subset.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/test_prody_anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/test_prody_catdcd.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/test_prody_examples.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/test_prody_gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/test_prody_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_coevol.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_conserv.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_fetch.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_filter.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_merge.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_occupancy.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_rankorder.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_refine.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_search.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/nmaoptions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_align.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_biomol.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_blast.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_catdcd.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_eda.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_energy.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_fetch.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_select.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps copying build/lib.linux-x86_64-cpython-312/prody/apps/apptools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/datafiles copying build/lib.linux-x86_64-cpython-312/prody/utilities/datafiles/mod_res_map.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/datafiles copying build/lib.linux-x86_64-cpython-312/prody/utilities/datafiles/saxs_water.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/datafiles copying build/lib.linux-x86_64-cpython-312/prody/utilities/TreeConstruction.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/catchall.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/checkers.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/doctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/drawtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/eigtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/laptools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/legacy.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/logger.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/misctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/pathtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/seqtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/settings.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/domain_decomposition copying build/lib.linux-x86_64-cpython-312/prody/domain_decomposition/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/domain_decomposition copying build/lib.linux-x86_64-cpython-312/prody/domain_decomposition/spectrus.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/domain_decomposition creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-312/prody/compounds/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-312/prody/compounds/bird.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-312/prody/compounds/ccd.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-312/prody/compounds/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-312/prody/compounds/pdbligands.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/compounds creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/cluster.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/hic.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/norm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/straw.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/dcdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/frame.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/psffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/trajbase.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/trajectory.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/trajfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/seqtools.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/msaio.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/msatools.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/msa.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/msafile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/plotting.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/sequence.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/sequence creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/ccealign.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/blastpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/ciffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/cifheader.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/compare.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/dssp.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/emdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/header.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/localpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/pdbclusters.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/pdbfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/starfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/stride.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/wwpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-312/prody/measure/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-312/prody/measure/contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-312/prody/measure/measure.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-312/prody/measure/transform.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/measure creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree copying build/lib.linux-x86_64-cpython-312/prody/kdtree/_CKDTree.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree copying build/lib.linux-x86_64-cpython-312/prody/kdtree/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree copying build/lib.linux-x86_64-cpython-312/prody/kdtree/kdtree.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-312/prody/ensemble/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-312/prody/ensemble/conformation.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-312/prody/ensemble/ensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-312/prody/ensemble/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-312/prody/ensemble/pdbensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/smtools.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/rtbtools.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/adaptive.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/bbenm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/clustenm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/compare.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/editing.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/entropy.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/essa.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/exanm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/exgnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/gamma.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/heatmapper.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/imanm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/mechstiff.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/mode.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/modeset.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/nma.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/nmdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/perturb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/plotting.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/rtb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/sampling.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/signature.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/vmdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/cath.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/dali.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/goa.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/pfam.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/quartataweb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/uniprot.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/database creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/acceptor.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/angle.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/atom.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/atomgroup.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/atomic.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/atommap.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/bond.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/chain.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/crossterm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/dihedral.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/donor.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/fields.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/flags.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/hierview.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/improper.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/nbexclusion.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/pointer.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/residue.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/segment.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/select.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/selection.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/subset.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_header.py to test_header.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure/test_measure.py to test_measure.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure/test_transform.py to test_transform.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/kdtree/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_select.py to test_select.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/apps/apptools.py to apptools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/catchall.py to catchall.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/checkers.py to checkers.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/doctools.py to doctools.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/drawtools.py to drawtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/eigtools.py to eigtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/laptools.py to laptools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/legacy.py to legacy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/logger.py to logger.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/misctools.py to misctools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/pathtools.py to pathtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/seqtools.py to seqtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/settings.py to settings.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/domain_decomposition/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/compounds/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/compounds/bird.py to bird.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/compounds/ccd.py to ccd.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/compounds/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/compounds/pdbligands.py to pdbligands.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/cluster.py to cluster.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/hic.py to hic.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/norm.py to norm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/straw.py to straw.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/frame.py to frame.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/psffile.py to psffile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/trajbase.py to trajbase.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/trajectory.py to trajectory.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/trajfile.py to trajfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/analysis.py to analysis.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/msa.py to msa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/msafile.py to msafile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/plotting.py to plotting.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/sequence.py to sequence.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/blastpdb.py to blastpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/ciffile.py to ciffile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/cifheader.py to cifheader.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/compare.py to compare.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/dssp.py to dssp.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/emdfile.py to emdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/header.py to header.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py to localpdb.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/pdbfile.py to pdbfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/starfile.py to starfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/stride.py to stride.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/wwpdb.py to wwpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/measure/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/measure/contacts.py to contacts.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/measure/measure.py to measure.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/measure/transform.py to transform.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree/kdtree.py to kdtree.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble/conformation.py to conformation.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble/ensemble.py to ensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/adaptive.py to adaptive.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/analysis.py to analysis.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/anm.py to anm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/bbenm.py to bbenm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/clustenm.py to clustenm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/compare.py to compare.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/editing.py to editing.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/entropy.py to entropy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/essa.py to essa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/exanm.py to exanm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/exgnm.py to exgnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/gamma.py to gamma.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/gnm.py to gnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/imanm.py to imanm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/mode.py to mode.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/modeset.py to modeset.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/nma.py to nma.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/pca.py to pca.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/perturb.py to perturb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/plotting.py to plotting.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/rtb.py to rtb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/sampling.py to sampling.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/signature.py to signature.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/database/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/database/cath.py to cath.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/database/dali.py to dali.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/database/goa.py to goa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/database/pfam.py to pfam.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/database/quartataweb.py to quartataweb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/database/uniprot.py to uniprot.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/acceptor.py to acceptor.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/angle.py to angle.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/atom.py to atom.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/atomgroup.py to atomgroup.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/atomic.py to atomic.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/atommap.py to atommap.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/bond.py to bond.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/chain.py to chain.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/crossterm.py to crossterm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/dihedral.py to dihedral.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/donor.py to donor.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/fields.py to fields.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/flags.py to flags.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/hierview.py to hierview.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/improper.py to improper.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/pointer.py to pointer.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/residue.py to residue.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/segment.py to segment.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/select.py to select.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/selection.py to selection.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/subset.py to subset.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/prody/__init__.py to __init__.cpython-312.pyc writing byte-compilation script '/tmp/tmpmylr_we_.py' /usr/bin/python3 /tmp/tmpmylr_we_.py /usr/lib64/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib64/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' removing /tmp/tmpmylr_we_.py running install_egg_info running egg_info creating ProDy.egg-info writing ProDy.egg-info/PKG-INFO writing dependency_links to ProDy.egg-info/dependency_links.txt writing entry points to ProDy.egg-info/entry_points.txt writing requirements to ProDy.egg-info/requires.txt writing top-level names to ProDy.egg-info/top_level.txt writing manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'prody/*/*/*.c' warning: no files found matching 'prody/*/*.cpp' warning: no files found matching 'prody/utilities/datafiles/*.txt' adding license file 'LICENSE.rst' writing manifest file 'ProDy.egg-info/SOURCES.txt' Copying ProDy.egg-info to /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12/site-packages/ProDy-2.4.0-py3.12.egg-info running install_scripts Installing evol script to /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/bin Installing prody script to /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/bin + rm -rfv /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/bin/__pycache__ + mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/bin + rm -f /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/bin/evol /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/bin/prody + cd scripts + cp -pr ./prody ./python3.12-prody + cp -pr ./evol ./python3.12-evol + sed -i '1s=^#!/usr/bin/\(python\|env python\)[0-9.]*=#!/usr/bin/python3=' ./prody ./evol ./python3.12-prody ./python3.12-evol + for i in prody-3.12 + touch -r ./python3.12-prody prody-3.12 + install -p prody-3.12 /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/bin + install -p ./prody /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/bin + install -p ./python3.12-prody /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/bin + ln -sf /usr/bin/python3.12-prody /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/bin/prody-3.12 + for i in evol-3.12 + touch -r ./python3.12-evol evol-3.12 + install -p evol-3.12 /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/bin + install -p ./evol /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/bin + install -p ./python3.12-evol /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/bin + ln -sf /usr/bin/python3.12-evol /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/bin/evol-3.12 + cd .. + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.4.0-4.fc39 --unique-debug-suffix -2.4.0-4.fc39.x86_64 --unique-debug-src-base ProDy-2.4.0-4.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/ProDy-2.4.0 find-debuginfo: starting Extracting debug info from 7 files DWARF-compressing 7 files sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/ProDy-2.4.0-4.fc39.x86_64 464 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib/debug/usr/lib64/python3.12 using python3.12 Bytecompiling .py files below /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/lib64/python3.12 using python3.12 /usr/lib64/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib64/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: python3-ProDy-2.4.0-4.fc39.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.NXMDXm + umask 022 + cd /builddir/build/BUILD + cd ProDy-2.4.0 + DOCDIR=/builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/share/doc/python3-ProDy + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/share/doc/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.0/README.rst /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/share/doc/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.BExa53 + umask 022 + cd /builddir/build/BUILD + cd ProDy-2.4.0 + LICENSEDIR=/builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/share/licenses/python3-ProDy + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/share/licenses/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.0/LICENSE.rst /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64/usr/share/licenses/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/evol-3.12 -> /usr/bin/python3.12-evol warning: absolute symlink: /usr/bin/prody-3.12 -> /usr/bin/python3.12-prody Provides: ProDy = 0:2.4.0-4.fc39 python-ProDy = 2.4.0-4.fc39 python3-ProDy = 2.4.0-4.fc39 python3-ProDy(x86-64) = 2.4.0-4.fc39 python3.12-ProDy = 2.4.0-4.fc39 python3.12dist(prody) = 2.4 python3dist(prody) = 2.4 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.12 python3.12dist(biopython) python3.12dist(numpy) >= 1.10 python3.12dist(pyparsing) python3.12dist(scipy) python3.12dist(setuptools) Obsoletes: python-ProDy < 2.4.0-4.fc39 Processing files: ProDy-debugsource-2.4.0-4.fc39.x86_64 Provides: ProDy-debugsource = 2.4.0-4.fc39 ProDy-debugsource(x86-64) = 2.4.0-4.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-ProDy-debuginfo-2.4.0-4.fc39.x86_64 Provides: debuginfo(build-id) = 08ef1caabe96852728c2a43d027eeb033f3ee597 debuginfo(build-id) = 5221f896de8160da133293d861cd4c4ed700e230 debuginfo(build-id) = 73c062870bd460be798d8507f4a8667b012a53f9 debuginfo(build-id) = 86ebc58e41da331b992f9b96527c9580683313f9 debuginfo(build-id) = cbfeda37df0fe16a0f049ce3daa0cf54d3b57b73 debuginfo(build-id) = dd5946f2054058a85edd9bd3dba54963c36ae5f7 debuginfo(build-id) = fb9e26780189114079c8d910f99923d2732ffbc6 python-ProDy-debuginfo = 2.4.0-4.fc39 python3-ProDy-debuginfo = 2.4.0-4.fc39 python3-ProDy-debuginfo(x86-64) = 2.4.0-4.fc39 python3.12-ProDy-debuginfo = 2.4.0-4.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: ProDy-debugsource(x86-64) = 2.4.0-4.fc39 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64 Wrote: /builddir/build/RPMS/python3-ProDy-debuginfo-2.4.0-4.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/ProDy-debugsource-2.4.0-4.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-ProDy-2.4.0-4.fc39.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ECWdHF + umask 022 + cd /builddir/build/BUILD + cd ProDy-2.4.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.bDcJVv + umask 022 + cd /builddir/build/BUILD + rm -rf ProDy-2.4.0 ProDy-2.4.0.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: absolute symlink: /usr/bin/evol-3.12 -> /usr/bin/python3.12-evol absolute symlink: /usr/bin/prody-3.12 -> /usr/bin/python3.12-prody Finish: rpmbuild ProDy-2.4.0-4.fc39.src.rpm Finish: build phase for ProDy-2.4.0-4.fc39.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1689765874.386041/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1689765874.386041/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1689765874.386041/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/ProDy-2.4.0-4.fc39.src.rpm) Config(child) 1 minutes 49 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool