Warning: Permanently added '3.92.179.68' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6202562-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.68 PID: 5451 Logging PID: 5452 Task: {'appstream': False, 'background': True, 'build_id': 6202562, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'e4bc5a70c5494397b2e01896085373fcb5c44422', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.11.1/smoldyn', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'smoldyn', 'package_version': '2.67.3-6', 'project_dirname': 'python3-scipy-1.11.1', 'project_name': 'python3-scipy-1.11.1', 'project_owner': 'psimovec', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/python3-scipy-1.11.1/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/python3-scipy-1.11.1--https://src.fedoraproject.org/user/releng', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/releng', 'tags': [], 'task_id': '6202562-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.11.1/smoldyn /var/lib/copr-rpmbuild/workspace/workdir-u0bnudni/smoldyn --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.11.1/smoldyn', '/var/lib/copr-rpmbuild/workspace/workdir-u0bnudni/smoldyn', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-u0bnudni/smoldyn'... Running: git checkout e4bc5a70c5494397b2e01896085373fcb5c44422 -- cmd: ['git', 'checkout', 'e4bc5a70c5494397b2e01896085373fcb5c44422', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-u0bnudni/smoldyn rc: 0 stdout: stderr: Note: switching to 'e4bc5a70c5494397b2e01896085373fcb5c44422'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at e4bc5a7 automatic import of smoldyn Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-u0bnudni/smoldyn rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Smoldyn-2.67.3.tar.gz INFO: Calling: curl -H Pragma: -o Smoldyn-2.67.3.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/python3-scipy-1.11.1/smoldyn/Smoldyn-2.67.3.tar.gz/md5/061227e5683e484b0dd465d378e5390b/Smoldyn-2.67.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 92.0M 100 92.0M 0 0 79.6M 0 0:00:01 0:00:01 --:--:-- 79.7M INFO: Reading stdout from command: md5sum Smoldyn-2.67.3.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-u0bnudni/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-u0bnudni/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1689992057.917828 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-u0bnudni/smoldyn/smoldyn.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1689992057.917828/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 27 MB/s | 1.9 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 203 MB/s | 70 MB 00:00 fedora 41 MB/s | 72 MB 00:01 Last metadata expiration check: 0:00:01 ago on Sat Jul 22 02:14:36 2023. Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing: dnf-plugins-core noarch 4.4.1-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38 k python3-dnf noarch 4.16.1-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 546 k Installing dependencies: alternatives x86_64 1.24-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k audit-libs x86_64 3.1.1-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 117 k basesystem noarch 11-17.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.0 k bash x86_64 5.2.15-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M bzip2-libs x86_64 1.0.8-16.fc39 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 686 k tpm2-tss x86_64 4.0.1-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 671 k tzdata noarch 2023c-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 433 k xz-libs x86_64 5.4.3-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 108 k zchunk-libs x86_64 1.3.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 52 k zlib x86_64 1.2.13-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 95 k Transaction Summary ======================================================================================================================================== Install 140 Packages Total download size: 56 M Installed size: 201 M Downloading Packages: (1/140): basesystem-11-17.fc39.noarch.rpm 186 kB/s | 7.0 kB 00:00 (2/140): alternatives-1.24-1.fc39.x86_64.rpm 699 kB/s | 39 kB 00:00 (3/140): audit-libs-3.1.1-3.fc39.x86_64.rpm 2.0 MB/s | 117 kB 00:00 (4/140): bzip2-libs-1.0.8-16.fc39.x86_64.rpm 7.2 MB/s | 41 kB 00:00 (5/140): ca-certificates-2023.2.60-2.fc38.noarc 64 MB/s | 845 kB 00:00 (6/140): bash-5.2.15-3.fc38.x86_64.rpm 48 MB/s | 1.8 MB 00:00 (7/140): crypto-policies-20230614-1.git5f3458e. 15 MB/s | 65 kB 00:00 (8/140): coreutils-common-9.3-1.fc39.x86_64.rpm 111 MB/s | 2.1 MB 00:00 (9/140): coreutils-9.3-1.fc39.x86_64.rpm 36 MB/s | 1.1 MB 00:00 (10/140): dbus-libs-1.14.8-1.fc39.x86_64.rpm 22 MB/s | 156 kB 00:00 (11/140): curl-8.2.0-1.fc39.x86_64.rpm 20 MB/s | 348 kB 00:00 (12/140): cyrus-sasl-lib-2.1.28-10.fc39.x86_64. 62 MB/s | 792 kB 00:00 (13/140): dnf-data-4.16.1-3.fc39.noarch.rpm 10 MB/s | 38 kB 00:00 (14/140): dnf-plugins-core-4.4.1-4.fc39.noarch. 7.4 MB/s | 38 kB 00:00 (15/140): elfutils-default-yama-scope-0.189-3.f 3.8 MB/s | 13 kB 00:00 (16/140): elfutils-libelf-0.189-3.fc39.x86_64.r 43 MB/s | 195 kB 00:00 (17/140): expat-2.5.0-2.fc38.x86_64.rpm 24 MB/s | 110 kB 00:00 (18/140): elfutils-libs-0.189-3.fc39.x86_64.rpm 44 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glibc-minimal-langpack-2.37.9000-17.f 10 MB/s | 64 kB 00:00 (34/140): glibc-common-2.37.9000-17.fc39.x86_64 32 MB/s | 341 kB 00:00 (35/140): gmp-6.2.1-4.fc38.x86_64.rpm 34 MB/s | 313 kB 00:00 (36/140): gnupg2-2.4.3-1.fc39.x86_64.rpm 131 MB/s | 2.6 MB 00:00 (37/140): gpgme-1.20.0-4.fc39.x86_64.rpm 13 MB/s | 210 kB 00:00 (38/140): gnutls-3.8.0-6.fc39.x86_64.rpm 60 MB/s | 1.1 MB 00:00 (39/140): ima-evm-utils-1.5-1.fc39.x86_64.rpm 14 MB/s | 63 kB 00:00 (40/140): json-c-0.16-4.fc38.x86_64.rpm 3.9 MB/s | 41 kB 00:00 (41/140): grep-3.11-1.fc39.x86_64.rpm 19 MB/s | 287 kB 00:00 (42/140): keyutils-libs-1.6.1-6.fc38.x86_64.rpm 2.1 MB/s | 31 kB 00:00 (43/140): libacl-2.3.1-7.fc39.x86_64.rpm 5.1 MB/s | 23 kB 00:00 (44/140): krb5-libs-1.21-2.fc39.x86_64.rpm 82 MB/s | 761 kB 00:00 (45/140): libassuan-2.5.6-1.fc39.x86_64.rpm 17 MB/s | 67 kB 00:00 (46/140): libarchive-3.6.1-5.fc39.x86_64.rpm 63 MB/s | 400 kB 00:00 (47/140): libattr-2.5.1-7.fc39.x86_64.rpm 3.5 MB/s | 18 kB 00:00 (48/140): libblkid-2.39.1-2.fc39.x86_64.rpm 19 MB/s | 116 kB 00:00 (49/140): libb2-0.98.1-8.fc38.x86_64.rpm 2.7 MB/s | 25 kB 00:00 (50/140): libbrotli-1.0.9-12.fc39.x86_64.rpm 40 MB/s | 317 kB 00:00 (51/140): libcap-ng-0.8.3-6.fc39.x86_64.rpm 9.2 MB/s | 32 kB 00:00 (52/140): libcap-2.48-6.fc38.x86_64.rpm 10 MB/s | 67 kB 00:00 (53/140): libcomps-0.1.19-2.fc39.x86_64.rpm 13 MB/s | 77 kB 00:00 (54/140): libcurl-8.2.0-1.fc39.x86_64.rpm 52 MB/s | 324 kB 00:00 (55/140): libcom_err-1.47.0-1.fc39.x86_64.rpm 2.1 MB/s | 26 kB 00:00 (56/140): libeconf-0.4.0-5.fc38.x86_64.rpm 4.9 MB/s | 27 kB 00:00 (57/140): libdnf-0.70.1-4.fc39.x86_64.rpm 61 MB/s | 658 kB 00:00 (58/140): libdnf5-5.1.0-1.fc39.x86_64.rpm 86 MB/s | 879 kB 00:00 (59/140): libfsverity-1.4-9.fc38.x86_64.rpm 4.1 MB/s | 19 kB 00:00 (60/140): libffi-3.4.4-3.fc39.x86_64.rpm 6.2 MB/s | 40 kB 00:00 (61/140): libevent-2.1.12-8.fc38.x86_64.rpm 23 MB/s | 257 kB 00:00 (62/140): libgcc-13.1.1-4.fc39.x86_64.rpm 13 MB/s | 107 kB 00:00 (63/140): libgomp-13.1.1-4.fc39.x86_64.rpm 41 MB/s | 317 kB 00:00 (64/140): libgcrypt-1.10.2-1.fc39.x86_64.rpm 42 MB/s | 514 kB 00:00 (65/140): libgpg-error-1.47-1.fc39.x86_64.rpm 40 MB/s | 224 kB 00:00 (66/140): libidn2-2.3.4-2.fc38.x86_64.rpm 26 MB/s | 153 kB 00:00 (67/140): libksba-1.6.4-1.fc39.x86_64.rpm 34 MB/s | 159 kB 00:00 (68/140): libmount-2.39.1-2.fc39.x86_64.rpm 36 MB/s | 155 kB 00:00 (69/140): libmodulemd-2.15.0-4.fc39.x86_64.rpm 22 MB/s | 232 kB 00:00 (70/140): libnghttp2-1.55.1-1.fc39.x86_64.rpm 12 MB/s | 75 kB 00:00 (71/140): libpsl-0.21.2-3.fc39.x86_64.rpm 17 MB/s | 63 kB 00:00 (72/140): libnsl2-2.0.0-5.fc38.x86_64.rpm 5.7 MB/s | 30 kB 00:00 (73/140): librepo-1.15.1-3.fc39.x86_64.rpm 23 MB/s | 95 kB 00:00 (74/140): libreport-filesystem-2.17.11-2.fc39.n 3.4 MB/s | 14 kB 00:00 (75/140): libsemanage-3.5-3.fc39.x86_64.rpm 25 MB/s | 119 kB 00:00 (76/140): libselinux-3.5-4.fc39.x86_64.rpm 16 MB/s | 87 kB 00:00 (77/140): libsmartcols-2.39.1-2.fc39.x86_64.rpm 21 MB/s | 67 kB 00:00 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00:00 (93/140): lua-libs-5.4.4-9.fc39.x86_64.rpm 28 MB/s | 133 kB 00:00 (94/140): lz4-libs-1.9.4-3.fc39.x86_64.rpm 8.3 MB/s | 67 kB 00:00 (95/140): libzstd-1.5.5-1.fc39.x86_64.rpm 22 MB/s | 308 kB 00:00 (96/140): mpdecimal-2.5.1-6.fc38.x86_64.rpm 13 MB/s | 89 kB 00:00 (97/140): mpfr-4.2.0-2.fc39.x86_64.rpm 43 MB/s | 343 kB 00:00 (98/140): ncurses-base-6.4-5.20230520.fc39.noar 10 MB/s | 63 kB 00:00 (99/140): ncurses-libs-6.4-5.20230520.fc39.x86_ 49 MB/s | 336 kB 00:00 (100/140): openldap-2.6.4-3.fc39.x86_64.rpm 27 MB/s | 254 kB 00:00 (101/140): nettle-3.9.1-1.fc39.x86_64.rpm 34 MB/s | 425 kB 00:00 (102/140): npth-1.6-13.fc39.x86_64.rpm 2.1 MB/s | 24 kB 00:00 (103/140): p11-kit-trust-0.24.1-6.fc38.x86_64.r 20 MB/s | 136 kB 00:00 (104/140): p11-kit-0.24.1-6.fc38.x86_64.rpm 40 MB/s | 345 kB 00:00 (105/140): openssl-libs-3.0.8-2.fc39.x86_64.rpm 140 MB/s | 2.1 MB 00:00 (106/140): pcre2-10.42-1.fc38.1.x86_64.rpm 32 MB/s | 234 kB 00:00 (107/140): pcre2-syntax-10.42-1.fc38.1.noarch.r 25 MB/s | 144 kB 00:00 (108/140): popt-1.19-2.fc38.x86_64.rpm 14 MB/s | 60 kB 00:00 (109/140): python3-3.12.0~b4-1.fc39.x86_64.rpm 6.0 MB/s | 26 kB 00:00 (110/140): publicsuffix-list-dafsa-20230614-1.f 6.2 MB/s | 57 kB 00:00 (111/140): python-pip-wheel-23.1.2-2.fc39.noarc 127 MB/s | 1.4 MB 00:00 (112/140): python3-dateutil-2.8.2-9.fc39.noarch 59 MB/s | 344 kB 00:00 (113/140): python3-dbus-1.3.2-3.fc39.x86_64.rpm 14 MB/s | 146 kB 00:00 (114/140): python3-dnf-4.16.1-3.fc39.noarch.rpm 88 MB/s | 546 kB 00:00 (115/140): python3-distro-1.8.0-5.fc39.noarch.r 4.4 MB/s | 44 kB 00:00 (116/140): python3-dnf-plugins-core-4.4.1-4.fc3 49 MB/s | 278 kB 00:00 (117/140): python3-gpg-1.20.0-4.fc39.x86_64.rpm 45 MB/s | 283 kB 00:00 (118/140): python3-hawkey-0.70.1-4.fc39.x86_64. 17 MB/s | 107 kB 00:00 (119/140): python3-libcomps-0.1.19-2.fc39.x86_6 3.4 MB/s | 48 kB 00:00 (120/140): python3-libdnf-0.70.1-4.fc39.x86_64. 40 MB/s | 822 kB 00:00 (121/140): python3-rpm-4.18.91-7.fc39.x86_64.rp 5.8 MB/s | 67 kB 00:00 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tzdata-2023c-1.fc39.noarch.rpm 56 MB/s | 433 kB 00:00 (137/140): tpm2-tss-4.0.1-3.fc38.x86_64.rpm 63 MB/s | 671 kB 00:00 (138/140): xz-libs-5.4.3-1.fc39.x86_64.rpm 23 MB/s | 108 kB 00:00 (139/140): zchunk-libs-1.3.1-1.fc39.x86_64.rpm 10 MB/s | 52 kB 00:00 (140/140): zlib-1.2.13-3.fc38.x86_64.rpm 21 MB/s | 95 kB 00:00 -------------------------------------------------------------------------------- Total 111 MB/s | 56 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-4.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.1.1-4.fc39.x86_64 1/140 Running scriptlet: libgcc-13.1.1-4.fc39.x86_64 1/140 Installing : tzdata-2023c-1.fc39.noarch 2/140 Installing : crypto-policies-20230614-1.git5f3458e.fc39.noarc 3/140 Running scriptlet: crypto-policies-20230614-1.git5f3458e.fc39.noarc 3/140 Installing : fedora-release-identity-basic-39-0.21.noarch 4/140 Installing : publicsuffix-list-dafsa-20230614-1.fc39.noarch 5/140 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 6/140 Installing : ncurses-base-6.4-5.20230520.fc39.noarch 7/140 Installing : libssh-config-0.10.5-1.fc39.noarch 8/140 Installing : libreport-filesystem-2.17.11-2.fc39.noarch 9/140 Installing : fedora-gpg-keys-39-0.3.noarch 10/140 Installing : fedora-release-39-0.21.noarch 11/140 Installing : fedora-release-common-39-0.21.noarch 12/140 Installing : fedora-repos-rawhide-39-0.3.noarch 13/140 Installing : fedora-repos-39-0.3.noarch 14/140 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python-pip-wheel-23.1.2-2.fc39.noarch 104/140 Installing : python3-3.12.0~b4-1.fc39.x86_64 105/140 Installing : python3-libs-3.12.0~b4-1.fc39.x86_64 106/140 Installing : python3-libcomps-0.1.19-2.fc39.x86_64 107/140 Installing : python3-dbus-1.3.2-3.fc39.x86_64 108/140 Installing : python3-distro-1.8.0-5.fc39.noarch 109/140 Installing : python3-six-1.16.0-11.fc39.noarch 110/140 Installing : python3-dateutil-1:2.8.2-9.fc39.noarch 111/140 Installing : python3-systemd-235-4.fc39.x86_64 112/140 Installing : libarchive-3.6.1-5.fc39.x86_64 113/140 Installing : libevent-2.1.12-8.fc38.x86_64 114/140 Installing : openldap-2.6.4-3.fc39.x86_64 115/140 Installing : libcurl-8.2.0-1.fc39.x86_64 116/140 Running scriptlet: tpm2-tss-4.0.1-3.fc38.x86_64 117/140 useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Installing : tpm2-tss-4.0.1-3.fc38.x86_64 117/140 Installing : gnupg2-2.4.3-1.fc39.x86_64 118/140 Installing : gpgme-1.20.0-4.fc39.x86_64 119/140 Installing : librepo-1.15.1-3.fc39.x86_64 120/140 Installing : python3-gpg-1.20.0-4.fc39.x86_64 121/140 Installing : ima-evm-utils-1.5-1.fc39.x86_64 122/140 Installing : curl-8.2.0-1.fc39.x86_64 123/140 Installing : libfsverity-1.4-9.fc38.x86_64 124/140 Installing : rpm-sequoia-1.4.1-1.fc39.x86_64 125/140 Installing : rpm-libs-4.18.91-7.fc39.x86_64 126/140 Installing : libmodulemd-2.15.0-4.fc39.x86_64 127/140 Installing : libsolv-0.7.24-8.fc39.x86_64 128/140 Installing : libdnf-0.70.1-4.fc39.x86_64 129/140 Installing : python3-libdnf-0.70.1-4.fc39.x86_64 130/140 Installing : python3-hawkey-0.70.1-4.fc39.x86_64 131/140 Installing : libdnf5-5.1.0-1.fc39.x86_64 132/140 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : dnf-data-4.16.1-3.fc39.noarch 133/140 Installing : rpm-build-libs-4.18.91-7.fc39.x86_64 134/140 Installing : rpm-sign-libs-4.18.91-7.fc39.x86_64 135/140 Installing : python3-rpm-4.18.91-7.fc39.x86_64 136/140 Installing : python3-dnf-4.16.1-3.fc39.noarch 137/140 Installing : python3-dnf-plugins-core-4.4.1-4.fc39.noarch 138/140 Installing : dnf-plugins-core-4.4.1-4.fc39.noarch 139/140 Running scriptlet: rpm-4.18.91-7.fc39.x86_64 140/140 Installing : rpm-4.18.91-7.fc39.x86_64 140/140 Running scriptlet: filesystem-3.18-4.fc39.x86_64 140/140 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 140/140 Running scriptlet: rpm-4.18.91-7.fc39.x86_64 140/140 Verifying : alternatives-1.24-1.fc39.x86_64 1/140 Verifying : audit-libs-3.1.1-3.fc39.x86_64 2/140 Verifying : basesystem-11-17.fc39.noarch 3/140 Verifying : bash-5.2.15-3.fc38.x86_64 4/140 Verifying : bzip2-libs-1.0.8-16.fc39.x86_64 5/140 Verifying : ca-certificates-2023.2.60-2.fc38.noarch 6/140 Verifying : coreutils-9.3-1.fc39.x86_64 7/140 Verifying : coreutils-common-9.3-1.fc39.x86_64 8/140 Verifying : crypto-policies-20230614-1.git5f3458e.fc39.noarc 9/140 Verifying : curl-8.2.0-1.fc39.x86_64 10/140 Verifying : cyrus-sasl-lib-2.1.28-10.fc39.x86_64 11/140 Verifying : 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python3-3.12.0~b4-1.fc39.x86_64 111/140 Verifying : python3-dateutil-1:2.8.2-9.fc39.noarch 112/140 Verifying : python3-dbus-1.3.2-3.fc39.x86_64 113/140 Verifying : python3-distro-1.8.0-5.fc39.noarch 114/140 Verifying : python3-dnf-4.16.1-3.fc39.noarch 115/140 Verifying : python3-dnf-plugins-core-4.4.1-4.fc39.noarch 116/140 Verifying : python3-gpg-1.20.0-4.fc39.x86_64 117/140 Verifying : python3-hawkey-0.70.1-4.fc39.x86_64 118/140 Verifying : python3-libcomps-0.1.19-2.fc39.x86_64 119/140 Verifying : python3-libdnf-0.70.1-4.fc39.x86_64 120/140 Verifying : python3-libs-3.12.0~b4-1.fc39.x86_64 121/140 Verifying : python3-rpm-4.18.91-7.fc39.x86_64 122/140 Verifying : python3-six-1.16.0-11.fc39.noarch 123/140 Verifying : python3-systemd-235-4.fc39.x86_64 124/140 Verifying : readline-8.2-3.fc38.x86_64 125/140 Verifying : rpm-4.18.91-7.fc39.x86_64 126/140 Verifying : rpm-build-libs-4.18.91-7.fc39.x86_64 127/140 Verifying : rpm-libs-4.18.91-7.fc39.x86_64 128/140 Verifying : rpm-sequoia-1.4.1-1.fc39.x86_64 129/140 Verifying : rpm-sign-libs-4.18.91-7.fc39.x86_64 130/140 Verifying : sed-4.8-12.fc38.x86_64 131/140 Verifying : setup-2.14.3-3.fc39.noarch 132/140 Verifying : shadow-utils-2:4.13-7.fc39.x86_64 133/140 Verifying : sqlite-libs-3.42.0-6.fc39.x86_64 134/140 Verifying : systemd-libs-254~rc2-4.fc39.x86_64 135/140 Verifying : tpm2-tss-4.0.1-3.fc38.x86_64 136/140 Verifying : tzdata-2023c-1.fc39.noarch 137/140 Verifying : xz-libs-5.4.3-1.fc39.x86_64 138/140 Verifying : zchunk-libs-1.3.1-1.fc39.x86_64 139/140 Verifying : zlib-1.2.13-3.fc38.x86_64 140/140 Installed products updated. Installed: alternatives-1.24-1.fc39.x86_64 audit-libs-3.1.1-3.fc39.x86_64 basesystem-11-17.fc39.noarch bash-5.2.15-3.fc38.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.3-1.fc39.x86_64 coreutils-common-9.3-1.fc39.x86_64 crypto-policies-20230614-1.git5f3458e.fc39.noarch curl-8.2.0-1.fc39.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 dbus-libs-1:1.14.8-1.fc39.x86_64 dnf-data-4.16.1-3.fc39.noarch dnf-plugins-core-4.4.1-4.fc39.noarch elfutils-default-yama-scope-0.189-3.fc39.noarch elfutils-libelf-0.189-3.fc39.x86_64 elfutils-libs-0.189-3.fc39.x86_64 expat-2.5.0-2.fc38.x86_64 fedora-gpg-keys-39-0.3.noarch fedora-release-39-0.21.noarch fedora-release-common-39-0.21.noarch fedora-release-identity-basic-39-0.21.noarch fedora-repos-39-0.3.noarch fedora-repos-rawhide-39-0.3.noarch file-libs-5.44-4.fc39.x86_64 filesystem-3.18-4.fc39.x86_64 findutils-1:4.9.0-4.fc39.x86_64 fmt-10.0.0-2.fc39.x86_64 gawk-5.2.2-1.fc39.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 glib2-2.77.0-7.fc39.x86_64 glibc-2.37.9000-17.fc39.x86_64 glibc-common-2.37.9000-17.fc39.x86_64 glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnupg2-2.4.3-1.fc39.x86_64 gnutls-3.8.0-6.fc39.x86_64 gpgme-1.20.0-4.fc39.x86_64 grep-3.11-1.fc39.x86_64 ima-evm-utils-1.5-1.fc39.x86_64 json-c-0.16-4.fc38.x86_64 keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.21-2.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libarchive-3.6.1-5.fc39.x86_64 libassuan-2.5.6-1.fc39.x86_64 libattr-2.5.1-7.fc39.x86_64 libb2-0.98.1-8.fc38.x86_64 libblkid-2.39.1-2.fc39.x86_64 libbrotli-1.0.9-12.fc39.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-6.fc39.x86_64 libcom_err-1.47.0-1.fc39.x86_64 libcomps-0.1.19-2.fc39.x86_64 libcurl-8.2.0-1.fc39.x86_64 libdnf-0.70.1-4.fc39.x86_64 libdnf5-5.1.0-1.fc39.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libffi-3.4.4-3.fc39.x86_64 libfsverity-1.4-9.fc38.x86_64 libgcc-13.1.1-4.fc39.x86_64 libgcrypt-1.10.2-1.fc39.x86_64 libgomp-13.1.1-4.fc39.x86_64 libgpg-error-1.47-1.fc39.x86_64 libidn2-2.3.4-2.fc38.x86_64 libksba-1.6.4-1.fc39.x86_64 libmodulemd-2.15.0-4.fc39.x86_64 libmount-2.39.1-2.fc39.x86_64 libnghttp2-1.55.1-1.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpsl-0.21.2-3.fc39.x86_64 librepo-1.15.1-3.fc39.x86_64 libreport-filesystem-2.17.11-2.fc39.noarch libselinux-3.5-4.fc39.x86_64 libsemanage-3.5-3.fc39.x86_64 libsepol-3.5-1.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.39.1-2.fc39.x86_64 libsolv-0.7.24-8.fc39.x86_64 libssh-0.10.5-1.fc39.x86_64 libssh-config-0.10.5-1.fc39.noarch libstdc++-13.1.1-4.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.rc1.fc39.x86_64 libunistring-1.1-3.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libuuid-2.39.1-2.fc39.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.36-1.fc39.x86_64 libxml2-2.10.4-2.fc39.x86_64 libyaml-0.2.5-9.fc38.x86_64 libzstd-1.5.5-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 lz4-libs-1.9.4-3.fc39.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 mpfr-4.2.0-2.fc39.x86_64 ncurses-base-6.4-5.20230520.fc39.noarch ncurses-libs-6.4-5.20230520.fc39.x86_64 nettle-3.9.1-1.fc39.x86_64 npth-1.6-13.fc39.x86_64 openldap-2.6.4-3.fc39.x86_64 openssl-libs-1:3.0.8-2.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230614-1.fc39.noarch python-pip-wheel-23.1.2-2.fc39.noarch python3-3.12.0~b4-1.fc39.x86_64 python3-dateutil-1:2.8.2-9.fc39.noarch python3-dbus-1.3.2-3.fc39.x86_64 python3-distro-1.8.0-5.fc39.noarch python3-dnf-4.16.1-3.fc39.noarch python3-dnf-plugins-core-4.4.1-4.fc39.noarch python3-gpg-1.20.0-4.fc39.x86_64 python3-hawkey-0.70.1-4.fc39.x86_64 python3-libcomps-0.1.19-2.fc39.x86_64 python3-libdnf-0.70.1-4.fc39.x86_64 python3-libs-3.12.0~b4-1.fc39.x86_64 python3-rpm-4.18.91-7.fc39.x86_64 python3-six-1.16.0-11.fc39.noarch python3-systemd-235-4.fc39.x86_64 readline-8.2-3.fc38.x86_64 rpm-4.18.91-7.fc39.x86_64 rpm-build-libs-4.18.91-7.fc39.x86_64 rpm-libs-4.18.91-7.fc39.x86_64 rpm-sequoia-1.4.1-1.fc39.x86_64 rpm-sign-libs-4.18.91-7.fc39.x86_64 sed-4.8-12.fc38.x86_64 setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-7.fc39.x86_64 sqlite-libs-3.42.0-6.fc39.x86_64 systemd-libs-254~rc2-4.fc39.x86_64 tpm2-tss-4.0.1-3.fc38.x86_64 tzdata-2023c-1.fc39.noarch xz-libs-5.4.3-1.fc39.x86_64 zchunk-libs-1.3.1-1.fc39.x86_64 zlib-1.2.13-3.fc38.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1689992057.917828/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 29 MB/s | 1.9 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 204 MB/s | 70 MB 00:00 fedora 50 MB/s | 72 MB 00:01 Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing group/module packages: bash x86_64 5.2.15-3.fc38 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ca-certificates-2023.2.60-2.fc38.noarch 12/154 Verifying : coreutils-9.3-1.fc39.x86_64 13/154 Verifying : coreutils-common-9.3-1.fc39.x86_64 14/154 Verifying : cpio-2.14-2.fc39.x86_64 15/154 Verifying : cracklib-2.9.11-1.fc39.x86_64 16/154 Verifying : crypto-policies-20230614-1.git5f3458e.fc39.noarc 17/154 Verifying : curl-8.2.0-1.fc39.x86_64 18/154 Verifying : cyrus-sasl-lib-2.1.28-10.fc39.x86_64 19/154 Verifying : debugedit-5.0-9.fc39.x86_64 20/154 Verifying : diffutils-3.10-2.fc39.x86_64 21/154 Verifying : dwz-0.15-2.fc38.x86_64 22/154 Verifying : ed-1.19-2.fc38.x86_64 23/154 Verifying : efi-srpm-macros-5-8.fc39.noarch 24/154 Verifying : elfutils-0.189-3.fc39.x86_64 25/154 Verifying : elfutils-debuginfod-client-0.189-3.fc39.x86_64 26/154 Verifying : elfutils-default-yama-scope-0.189-3.fc39.noarch 27/154 Verifying : elfutils-libelf-0.189-3.fc39.x86_64 28/154 Verifying : elfutils-libs-0.189-3.fc39.x86_64 29/154 Verifying : fedora-gpg-keys-39-0.3.noarch 30/154 Verifying : fedora-release-39-0.21.noarch 31/154 Verifying : fedora-release-common-39-0.21.noarch 32/154 Verifying : fedora-release-identity-basic-39-0.21.noarch 33/154 Verifying : fedora-repos-39-0.3.noarch 34/154 Verifying : fedora-repos-rawhide-39-0.3.noarch 35/154 Verifying : file-5.44-4.fc39.x86_64 36/154 Verifying : file-libs-5.44-4.fc39.x86_64 37/154 Verifying : filesystem-3.18-4.fc39.x86_64 38/154 Verifying : findutils-1:4.9.0-4.fc39.x86_64 39/154 Verifying : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 40/154 Verifying : fpc-srpm-macros-1.3-7.fc38.noarch 41/154 Verifying : gawk-5.2.2-1.fc39.x86_64 42/154 Verifying : gdb-minimal-13.2-5.fc39.x86_64 43/154 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 44/154 Verifying : ghc-srpm-macros-1.6.1-1.fc38.noarch 45/154 Verifying : glibc-2.37.9000-17.fc39.x86_64 46/154 Verifying : glibc-common-2.37.9000-17.fc39.x86_64 47/154 Verifying : glibc-gconv-extra-2.37.9000-17.fc39.x86_64 48/154 Verifying : glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 49/154 Verifying : gmp-1:6.2.1-4.fc38.x86_64 50/154 Verifying : gnat-srpm-macros-6-2.fc38.noarch 51/154 Verifying : go-srpm-macros-3.2.0-3.fc39.noarch 52/154 Verifying : grep-3.11-1.fc39.x86_64 53/154 Verifying : gzip-1.12-3.fc38.x86_64 54/154 Verifying : info-7.0.3-2.fc39.x86_64 55/154 Verifying : jansson-2.13.1-6.fc38.x86_64 56/154 Verifying : kernel-srpm-macros-1.0-19.fc39.noarch 57/154 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 58/154 Verifying : krb5-libs-1.21-2.fc39.x86_64 59/154 Verifying : libacl-2.3.1-7.fc39.x86_64 60/154 Verifying : libarchive-3.6.1-5.fc39.x86_64 61/154 Verifying : libattr-2.5.1-7.fc39.x86_64 62/154 Verifying : libblkid-2.39.1-2.fc39.x86_64 63/154 Verifying : libbrotli-1.0.9-12.fc39.x86_64 64/154 Verifying : libcap-2.48-6.fc38.x86_64 65/154 Verifying : libcap-ng-0.8.3-6.fc39.x86_64 66/154 Verifying : libcom_err-1.47.0-1.fc39.x86_64 67/154 Verifying : libcurl-8.2.0-1.fc39.x86_64 68/154 Verifying : libdb-5.3.28-55.fc38.x86_64 69/154 Verifying : libeconf-0.4.0-5.fc38.x86_64 70/154 Verifying : libevent-2.1.12-8.fc38.x86_64 71/154 Verifying : libfdisk-2.39.1-2.fc39.x86_64 72/154 Verifying : libffi-3.4.4-3.fc39.x86_64 73/154 Verifying : libgcc-13.1.1-4.fc39.x86_64 74/154 Verifying : libgomp-13.1.1-4.fc39.x86_64 75/154 Verifying : libidn2-2.3.4-2.fc38.x86_64 76/154 Verifying : libmount-2.39.1-2.fc39.x86_64 77/154 Verifying : libnghttp2-1.55.1-1.fc39.x86_64 78/154 Verifying : libnsl2-2.0.0-5.fc38.x86_64 79/154 Verifying : libpkgconf-1.9.5-1.fc39.x86_64 80/154 Verifying : libpsl-0.21.2-3.fc39.x86_64 81/154 Verifying : libpwquality-1.4.5-5.fc39.x86_64 82/154 Verifying : libselinux-3.5-4.fc39.x86_64 83/154 Verifying : libsemanage-3.5-3.fc39.x86_64 84/154 Verifying : libsepol-3.5-1.fc39.x86_64 85/154 Verifying : libsigsegv-2.14-4.fc38.x86_64 86/154 Verifying : libsmartcols-2.39.1-2.fc39.x86_64 87/154 Verifying : libssh-0.10.5-1.fc39.x86_64 88/154 Verifying : libssh-config-0.10.5-1.fc39.noarch 89/154 Verifying : libstdc++-13.1.1-4.fc39.x86_64 90/154 Verifying : libtasn1-4.19.0-2.fc38.x86_64 91/154 Verifying : libtirpc-1.3.3-1.rc1.fc39.x86_64 92/154 Verifying : libunistring-1.1-3.fc38.x86_64 93/154 Verifying : libunistring1.0-1.0-1.fc38.x86_64 94/154 Verifying : libutempter-1.2.1-9.fc39.x86_64 95/154 Verifying : libuuid-2.39.1-2.fc39.x86_64 96/154 Verifying : libverto-0.3.2-5.fc38.x86_64 97/154 Verifying : libxcrypt-4.4.36-1.fc39.x86_64 98/154 Verifying : libxml2-2.10.4-2.fc39.x86_64 99/154 Verifying : libzstd-1.5.5-1.fc39.x86_64 100/154 Verifying : lua-libs-5.4.4-9.fc39.x86_64 101/154 Verifying : lua-srpm-macros-1-8.fc38.noarch 102/154 Verifying : lz4-libs-1.9.4-3.fc39.x86_64 103/154 Verifying : mpfr-4.2.0-2.fc39.x86_64 104/154 Verifying : ncurses-base-6.4-5.20230520.fc39.noarch 105/154 Verifying : ncurses-libs-6.4-5.20230520.fc39.x86_64 106/154 Verifying : ocaml-srpm-macros-8-1.fc39.noarch 107/154 Verifying : openblas-srpm-macros-2-13.fc38.noarch 108/154 Verifying : openldap-2.6.4-3.fc39.x86_64 109/154 Verifying : openssl-libs-1:3.0.8-2.fc39.x86_64 110/154 Verifying : p11-kit-0.24.1-6.fc38.x86_64 111/154 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 112/154 Verifying : package-notes-srpm-macros-0.5-8.fc39.noarch 113/154 Verifying : pam-1.5.3-1.fc39.x86_64 114/154 Verifying : pam-libs-1.5.3-1.fc39.x86_64 115/154 Verifying : patch-2.7.6-21.fc39.x86_64 116/154 Verifying : pcre2-10.42-1.fc38.1.x86_64 117/154 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 118/154 Verifying : perl-srpm-macros-1-50.fc39.noarch 119/154 Verifying : pkgconf-1.9.5-1.fc39.x86_64 120/154 Verifying : pkgconf-m4-1.9.5-1.fc39.noarch 121/154 Verifying : pkgconf-pkg-config-1.9.5-1.fc39.x86_64 122/154 Verifying : popt-1.19-2.fc38.x86_64 123/154 Verifying : publicsuffix-list-dafsa-20230614-1.fc39.noarch 124/154 Verifying : pyproject-srpm-macros-1.9.0-1.fc39.noarch 125/154 Verifying : python-srpm-macros-3.12-1.fc39.noarch 126/154 Verifying : qt5-srpm-macros-5.15.10-1.fc39.noarch 127/154 Verifying : qt6-srpm-macros-6.5.1-1.fc39.noarch 128/154 Verifying : readline-8.2-3.fc38.x86_64 129/154 Verifying : redhat-rpm-config-261-1.fc39.noarch 130/154 Verifying : rpm-4.18.91-7.fc39.x86_64 131/154 Verifying : rpm-build-4.18.91-7.fc39.x86_64 132/154 Verifying : rpm-build-libs-4.18.91-7.fc39.x86_64 133/154 Verifying : rpm-libs-4.18.91-7.fc39.x86_64 134/154 Verifying : rpm-sequoia-1.4.1-1.fc39.x86_64 135/154 Verifying : rpmautospec-rpm-macros-0.3.5-3.fc39.noarch 136/154 Verifying : rust-srpm-macros-24-2.fc39.noarch 137/154 Verifying : sed-4.8-12.fc38.x86_64 138/154 Verifying : setup-2.14.3-3.fc39.noarch 139/154 Verifying : shadow-utils-2:4.13-7.fc39.x86_64 140/154 Verifying : sqlite-libs-3.42.0-6.fc39.x86_64 141/154 Verifying : systemd-libs-254~rc2-4.fc39.x86_64 142/154 Verifying : tar-2:1.34-8.fc39.x86_64 143/154 Verifying : tzdata-2023c-1.fc39.noarch 144/154 Verifying : unzip-6.0-60.fc38.x86_64 145/154 Verifying : util-linux-2.39.1-2.fc39.x86_64 146/154 Verifying : util-linux-core-2.39.1-2.fc39.x86_64 147/154 Verifying : which-2.21-39.fc39.x86_64 148/154 Verifying : xxhash-libs-0.8.1-5.fc39.x86_64 149/154 Verifying : xz-5.4.3-1.fc39.x86_64 150/154 Verifying : xz-libs-5.4.3-1.fc39.x86_64 151/154 Verifying : zip-3.0-36.fc38.x86_64 152/154 Verifying : zlib-1.2.13-3.fc38.x86_64 153/154 Verifying : zstd-1.5.5-1.fc39.x86_64 154/154 Installed: alternatives-1.24-1.fc39.x86_64 ansible-srpm-macros-1-10.fc39.noarch audit-libs-3.1.1-3.fc39.x86_64 authselect-1.4.2-2.fc38.x86_64 authselect-libs-1.4.2-2.fc38.x86_64 basesystem-11-17.fc39.noarch bash-5.2.15-3.fc38.x86_64 binutils-2.40-9.fc39.x86_64 binutils-gold-2.40-9.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.3-1.fc39.x86_64 coreutils-common-9.3-1.fc39.x86_64 cpio-2.14-2.fc39.x86_64 cracklib-2.9.11-1.fc39.x86_64 crypto-policies-20230614-1.git5f3458e.fc39.noarch curl-8.2.0-1.fc39.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 debugedit-5.0-9.fc39.x86_64 diffutils-3.10-2.fc39.x86_64 dwz-0.15-2.fc38.x86_64 ed-1.19-2.fc38.x86_64 efi-srpm-macros-5-8.fc39.noarch elfutils-0.189-3.fc39.x86_64 elfutils-debuginfod-client-0.189-3.fc39.x86_64 elfutils-default-yama-scope-0.189-3.fc39.noarch elfutils-libelf-0.189-3.fc39.x86_64 elfutils-libs-0.189-3.fc39.x86_64 fedora-gpg-keys-39-0.3.noarch fedora-release-39-0.21.noarch fedora-release-common-39-0.21.noarch fedora-release-identity-basic-39-0.21.noarch fedora-repos-39-0.3.noarch fedora-repos-rawhide-39-0.3.noarch file-5.44-4.fc39.x86_64 file-libs-5.44-4.fc39.x86_64 filesystem-3.18-4.fc39.x86_64 findutils-1:4.9.0-4.fc39.x86_64 fonts-srpm-macros-1:2.0.5-11.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.2.2-1.fc39.x86_64 gdb-minimal-13.2-5.fc39.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37.9000-17.fc39.x86_64 glibc-common-2.37.9000-17.fc39.x86_64 glibc-gconv-extra-2.37.9000-17.fc39.x86_64 glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.2.0-3.fc39.noarch grep-3.11-1.fc39.x86_64 gzip-1.12-3.fc38.x86_64 info-7.0.3-2.fc39.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-19.fc39.noarch keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.21-2.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libarchive-3.6.1-5.fc39.x86_64 libattr-2.5.1-7.fc39.x86_64 libblkid-2.39.1-2.fc39.x86_64 libbrotli-1.0.9-12.fc39.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-6.fc39.x86_64 libcom_err-1.47.0-1.fc39.x86_64 libcurl-8.2.0-1.fc39.x86_64 libdb-5.3.28-55.fc38.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.39.1-2.fc39.x86_64 libffi-3.4.4-3.fc39.x86_64 libgcc-13.1.1-4.fc39.x86_64 libgomp-13.1.1-4.fc39.x86_64 libidn2-2.3.4-2.fc38.x86_64 libmount-2.39.1-2.fc39.x86_64 libnghttp2-1.55.1-1.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpkgconf-1.9.5-1.fc39.x86_64 libpsl-0.21.2-3.fc39.x86_64 libpwquality-1.4.5-5.fc39.x86_64 libselinux-3.5-4.fc39.x86_64 libsemanage-3.5-3.fc39.x86_64 libsepol-3.5-1.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.39.1-2.fc39.x86_64 libssh-0.10.5-1.fc39.x86_64 libssh-config-0.10.5-1.fc39.noarch libstdc++-13.1.1-4.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.rc1.fc39.x86_64 libunistring-1.1-3.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libutempter-1.2.1-9.fc39.x86_64 libuuid-2.39.1-2.fc39.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.36-1.fc39.x86_64 libxml2-2.10.4-2.fc39.x86_64 libzstd-1.5.5-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 lua-srpm-macros-1-8.fc38.noarch lz4-libs-1.9.4-3.fc39.x86_64 mpfr-4.2.0-2.fc39.x86_64 ncurses-base-6.4-5.20230520.fc39.noarch ncurses-libs-6.4-5.20230520.fc39.x86_64 ocaml-srpm-macros-8-1.fc39.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.4-3.fc39.x86_64 openssl-libs-1:3.0.8-2.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 package-notes-srpm-macros-0.5-8.fc39.noarch pam-1.5.3-1.fc39.x86_64 pam-libs-1.5.3-1.fc39.x86_64 patch-2.7.6-21.fc39.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-50.fc39.noarch pkgconf-1.9.5-1.fc39.x86_64 pkgconf-m4-1.9.5-1.fc39.noarch pkgconf-pkg-config-1.9.5-1.fc39.x86_64 popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230614-1.fc39.noarch pyproject-srpm-macros-1.9.0-1.fc39.noarch python-srpm-macros-3.12-1.fc39.noarch qt5-srpm-macros-5.15.10-1.fc39.noarch qt6-srpm-macros-6.5.1-1.fc39.noarch readline-8.2-3.fc38.x86_64 redhat-rpm-config-261-1.fc39.noarch rpm-4.18.91-7.fc39.x86_64 rpm-build-4.18.91-7.fc39.x86_64 rpm-build-libs-4.18.91-7.fc39.x86_64 rpm-libs-4.18.91-7.fc39.x86_64 rpm-sequoia-1.4.1-1.fc39.x86_64 rpmautospec-rpm-macros-0.3.5-3.fc39.noarch rust-srpm-macros-24-2.fc39.noarch sed-4.8-12.fc38.x86_64 setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-7.fc39.x86_64 sqlite-libs-3.42.0-6.fc39.x86_64 systemd-libs-254~rc2-4.fc39.x86_64 tar-2:1.34-8.fc39.x86_64 tzdata-2023c-1.fc39.noarch unzip-6.0-60.fc38.x86_64 util-linux-2.39.1-2.fc39.x86_64 util-linux-core-2.39.1-2.fc39.x86_64 which-2.21-39.fc39.x86_64 xxhash-libs-0.8.1-5.fc39.x86_64 xz-5.4.3-1.fc39.x86_64 xz-libs-5.4.3-1.fc39.x86_64 zip-3.0-36.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 zstd-1.5.5-1.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: pam-libs-1.5.3-1.fc39.x86_64 fedora-repos-rawhide-39-0.3.noarch zlib-1.2.13-3.fc38.x86_64 libcap-ng-0.8.3-6.fc39.x86_64 fedora-release-39-0.21.noarch libcom_err-1.47.0-1.fc39.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch libpsl-0.21.2-3.fc39.x86_64 glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 libxcrypt-4.4.36-1.fc39.x86_64 patch-2.7.6-21.fc39.x86_64 pkgconf-m4-1.9.5-1.fc39.noarch unzip-6.0-60.fc38.x86_64 tar-1.34-8.fc39.x86_64 gmp-6.2.1-4.fc38.x86_64 openssl-libs-3.0.8-2.fc39.x86_64 authselect-1.4.2-2.fc38.x86_64 debugedit-5.0-9.fc39.x86_64 pcre2-10.42-1.fc38.1.x86_64 glibc-2.37.9000-17.fc39.x86_64 findutils-4.9.0-4.fc39.x86_64 perl-srpm-macros-1-50.fc39.noarch efi-srpm-macros-5-8.fc39.noarch util-linux-core-2.39.1-2.fc39.x86_64 pam-1.5.3-1.fc39.x86_64 curl-8.2.0-1.fc39.x86_64 cracklib-2.9.11-1.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 mpfr-4.2.0-2.fc39.x86_64 qt6-srpm-macros-6.5.1-1.fc39.noarch cpio-2.14-2.fc39.x86_64 alternatives-1.24-1.fc39.x86_64 pkgconf-1.9.5-1.fc39.x86_64 libblkid-2.39.1-2.fc39.x86_64 rpm-build-4.18.91-7.fc39.x86_64 libsemanage-3.5-3.fc39.x86_64 rpm-build-libs-4.18.91-7.fc39.x86_64 dwz-0.15-2.fc38.x86_64 lua-srpm-macros-1-8.fc38.noarch util-linux-2.39.1-2.fc39.x86_64 libstdc++-13.1.1-4.fc39.x86_64 xz-5.4.3-1.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 libarchive-3.6.1-5.fc39.x86_64 fedora-gpg-keys-39-0.3.noarch xxhash-libs-0.8.1-5.fc39.x86_64 jansson-2.13.1-6.fc38.x86_64 libffi-3.4.4-3.fc39.x86_64 info-7.0.3-2.fc39.x86_64 rpm-4.18.91-7.fc39.x86_64 binutils-gold-2.40-9.fc39.x86_64 libunistring1.0-1.0-1.fc38.x86_64 fonts-srpm-macros-2.0.5-11.fc38.noarch libuuid-2.39.1-2.fc39.x86_64 libxml2-2.10.4-2.fc39.x86_64 libbrotli-1.0.9-12.fc39.x86_64 libtirpc-1.3.3-1.rc1.fc39.x86_64 file-5.44-4.fc39.x86_64 grep-3.11-1.fc39.x86_64 libeconf-0.4.0-5.fc38.x86_64 keyutils-libs-1.6.1-6.fc38.x86_64 libsepol-3.5-1.fc39.x86_64 libevent-2.1.12-8.fc38.x86_64 elfutils-libs-0.189-3.fc39.x86_64 xz-libs-5.4.3-1.fc39.x86_64 gdb-minimal-13.2-5.fc39.x86_64 package-notes-srpm-macros-0.5-8.fc39.noarch tzdata-2023c-1.fc39.noarch gawk-5.2.2-1.fc39.x86_64 python-srpm-macros-3.12-1.fc39.noarch kernel-srpm-macros-1.0-19.fc39.noarch libsmartcols-2.39.1-2.fc39.x86_64 sed-4.8-12.fc38.x86_64 ed-1.19-2.fc38.x86_64 coreutils-9.3-1.fc39.x86_64 zip-3.0-36.fc38.x86_64 libselinux-3.5-4.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 elfutils-default-yama-scope-0.189-3.fc39.noarch libpkgconf-1.9.5-1.fc39.x86_64 sqlite-libs-3.42.0-6.fc39.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 pyproject-srpm-macros-1.9.0-1.fc39.noarch elfutils-0.189-3.fc39.x86_64 glibc-common-2.37.9000-17.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libacl-2.3.1-7.fc39.x86_64 bash-5.2.15-3.fc38.x86_64 libfdisk-2.39.1-2.fc39.x86_64 libgcc-13.1.1-4.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 pkgconf-pkg-config-1.9.5-1.fc39.x86_64 basesystem-11-17.fc39.noarch 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rpmautospec-rpm-macros-0.3.5-3.fc39.noarch Start: buildsrpm Start: rpmbuild -bs warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689984000 Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-6.fc39.src.rpm RPM build warnings: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1689992057.917828/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1689992057.917828/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1689992057.917828/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-u0bnudni/smoldyn/smoldyn.spec) Config(child) 1 minutes 40 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/smoldyn-2.67.3-6.fc39.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1689992057.917828 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-6.fc39.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1689992057.917828/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1689992057.917828/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1689992057.917828/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 51 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 131 kB/s | 3.8 kB 00:00 fedora 50 kB/s | 18 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for smoldyn-2.67.3-6.fc39.src.rpm Start: build setup for smoldyn-2.67.3-6.fc39.src.rpm warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689984000 Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-6.fc39.src.rpm RPM build warnings: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 46 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 127 kB/s | 3.8 kB 00:00 fedora 52 kB/s | 18 kB 00:00 Dependencies resolved. ===================================================================================================================================== Package Arch Version Repository Size 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(6/246): python3-matplotlib-data-fonts-3.7.2-1. 126 MB/s | 2.3 MB 00:00 (7/246): python3-matplotlib-tk-3.7.2-1.fc39.x86 4.2 MB/s | 52 kB 00:00 (8/246): annobin-docs-12.21-1.fc39.noarch.rpm 4.3 MB/s | 95 kB 00:00 (9/246): abattis-cantarell-vf-fonts-0.301-9.fc3 4.8 MB/s | 121 kB 00:00 (10/246): annobin-plugin-gcc-12.21-1.fc39.x86_6 102 MB/s | 959 kB 00:00 (11/246): boost-1.81.0-5.fc39.x86_64.rpm 1.5 MB/s | 14 kB 00:00 (12/246): boost-atomic-1.81.0-5.fc39.x86_64.rpm 4.5 MB/s | 20 kB 00:00 (13/246): boost-chrono-1.81.0-5.fc39.x86_64.rpm 4.9 MB/s | 26 kB 00:00 (14/246): boost-container-1.81.0-5.fc39.x86_64. 7.7 MB/s | 40 kB 00:00 (15/246): boost-context-1.81.0-5.fc39.x86_64.rp 3.3 MB/s | 17 kB 00:00 (16/246): boost-contract-1.81.0-5.fc39.x86_64.r 7.8 MB/s | 46 kB 00:00 (17/246): boost-coroutine-1.81.0-5.fc39.x86_64. 4.1 MB/s | 20 kB 00:00 (18/246): boost-date-time-1.81.0-5.fc39.x86_64. 3.6 MB/s | 16 kB 00:00 (19/246): python3-scipy-1.11.1-1.fc39.x86_64.rp 212 MB/s | 21 MB 00:00 (20/246): boost-fiber-1.81.0-5.fc39.x86_64.rpm 1.3 MB/s | 42 kB 00:00 (21/246): boost-filesystem-1.81.0-5.fc39.x86_64 12 MB/s | 68 kB 00:00 (22/246): boost-iostreams-1.81.0-5.fc39.x86_64. 7.5 MB/s | 42 kB 00:00 (23/246): boost-json-1.81.0-5.fc39.x86_64.rpm 13 MB/s | 110 kB 00:00 (24/246): boost-graph-1.81.0-5.fc39.x86_64.rpm 6.1 MB/s | 153 kB 00:00 (25/246): boost-locale-1.81.0-5.fc39.x86_64.rpm 31 MB/s | 222 kB 00:00 (26/246): boost-log-1.81.0-5.fc39.x86_64.rpm 41 MB/s | 493 kB 00:00 (27/246): boost-devel-1.81.0-5.fc39.x86_64.rpm 129 MB/s | 12 MB 00:00 (28/246): boost-nowide-1.81.0-5.fc39.x86_64.rpm 1.5 MB/s | 21 kB 00:00 (29/246): boost-math-1.81.0-5.fc39.x86_64.rpm 9.9 MB/s | 219 kB 00:00 (30/246): boost-numpy3-1.81.0-5.fc39.x86_64.rpm 6.8 MB/s | 30 kB 00:00 (31/246): boost-program-options-1.81.0-5.fc39.x 21 MB/s | 110 kB 00:00 (32/246): boost-python3-1.81.0-5.fc39.x86_64.rp 20 MB/s | 97 kB 00:00 (33/246): boost-random-1.81.0-5.fc39.x86_64.rpm 5.4 MB/s | 24 kB 00:00 (34/246): boost-regex-1.81.0-5.fc39.x86_64.rpm 23 MB/s | 112 kB 00:00 (35/246): boost-serialization-1.81.0-5.fc39.x86 21 MB/s | 135 kB 00:00 (36/246): boost-stacktrace-1.81.0-5.fc39.x86_64 6.5 MB/s | 30 kB 00:00 (37/246): boost-system-1.81.0-5.fc39.x86_64.rpm 4.7 MB/s | 16 kB 00:00 (38/246): boost-thread-1.81.0-5.fc39.x86_64.rpm 17 MB/s | 59 kB 00:00 (39/246): boost-test-1.81.0-5.fc39.x86_64.rpm 43 MB/s | 241 kB 00:00 (40/246): boost-timer-1.81.0-5.fc39.x86_64.rpm 5.3 MB/s | 24 kB 00:00 (41/246): boost-type_erasure-1.81.0-5.fc39.x86_ 7.5 MB/s | 34 kB 00:00 (42/246): boost-wave-1.81.0-5.fc39.x86_64.rpm 37 MB/s | 225 kB 00:00 (43/246): cairo-1.17.8-4.fc39.x86_64.rpm 81 MB/s | 706 kB 00:00 (44/246): cmake-data-3.27.0-1.fc39.noarch.rpm 87 MB/s | 1.7 MB 00:00 (45/246): cmake-filesystem-3.27.0-1.fc39.x86_64 1.5 MB/s | 18 kB 00:00 (46/246): cmake-rpm-macros-3.27.0-1.fc39.noarch 1.8 MB/s | 17 kB 00:00 (47/246): default-fonts-core-sans-4.0-4.fc39.no 3.0 MB/s | 25 kB 00:00 (48/246): cmake-3.27.0-1.fc39.x86_64.rpm 118 MB/s | 8.0 MB 00:00 (49/246): dejavu-sans-fonts-2.37-20.fc38.noarch 50 MB/s | 1.3 MB 00:00 (50/246): emacs-filesystem-28.2-6.fc39.noarch.r 1.5 MB/s | 7.8 kB 00:00 (51/246): expat-2.5.0-2.fc38.x86_64.rpm 20 MB/s | 110 kB 00:00 (52/246): flexiblas-3.3.1-3.fc39.x86_64.rpm 5.9 MB/s | 33 kB 00:00 (53/246): cpp-13.1.1-4.fc39.x86_64.rpm 139 MB/s | 11 MB 00:00 (54/246): flexiblas-openblas-openmp-3.3.1-3.fc3 768 kB/s | 17 kB 00:00 (55/246): flexiblas-netlib-3.3.1-3.fc39.x86_64. 98 MB/s | 3.1 MB 00:00 (56/246): fontconfig-2.14.2-3.fc39.x86_64.rpm 27 MB/s | 283 kB 00:00 (57/246): fonts-filesystem-2.0.5-11.fc38.noarch 1.0 MB/s | 8.1 kB 00:00 (58/246): freeglut-3.4.0-3.fc39.x86_64.rpm 19 MB/s | 155 kB 00:00 (59/246): freetype-2.13.1-1.fc39.x86_64.rpm 50 MB/s | 414 kB 00:00 (60/246): freeglut-devel-3.4.0-3.fc39.x86_64.rp 78 MB/s | 890 kB 00:00 (61/246): gc-8.2.2-3.fc38.x86_64.rpm 25 MB/s | 110 kB 00:00 (62/246): fribidi-1.0.13-1.fc39.x86_64.rpm 16 MB/s | 90 kB 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perl-constant-1.33-500.fc39.noarch.r 5.5 MB/s | 23 kB 00:00 (193/246): perl-if-0.61.000-499.fc39.noarch.rpm 3.9 MB/s | 14 kB 00:00 (194/246): perl-interpreter-5.38.0-499.fc39.x86 21 MB/s | 72 kB 00:00 (195/246): perl-locale-1.10-499.fc39.noarch.rpm 3.5 MB/s | 14 kB 00:00 (196/246): perl-macros-5.38.0-499.fc39.noarch.r 2.2 MB/s | 12 kB 00:00 (197/246): perl-libs-5.38.0-499.fc39.x86_64.rpm 163 MB/s | 2.3 MB 00:00 (198/246): perl-mro-1.28-499.fc39.x86_64.rpm 3.9 MB/s | 29 kB 00:00 (199/246): perl-overloading-0.02-499.fc39.noarc 3.8 MB/s | 13 kB 00:00 (200/246): perl-parent-0.241-499.fc39.noarch.rp 3.9 MB/s | 15 kB 00:00 (201/246): perl-overload-1.37-499.fc39.noarch.r 5.4 MB/s | 45 kB 00:00 (202/246): perl-vars-1.05-499.fc39.noarch.rpm 4.4 MB/s | 13 kB 00:00 (203/246): perl-podlators-5.01-499.fc39.noarch. 28 MB/s | 121 kB 00:00 (204/246): pixman-0.42.2-1.fc39.x86_64.rpm 53 MB/s | 284 kB 00:00 (205/246): pyproject-rpm-macros-1.9.0-1.fc39.no 11 MB/s | 42 kB 00:00 (206/246): python-rpm-macros-3.12-1.fc39.noarch 5.2 MB/s | 19 kB 00:00 (207/246): pybind11-devel-2.10.4-2.fc39.x86_64. 16 MB/s | 164 kB 00:00 (208/246): python3-3.12.0~b4-1.fc39.x86_64.rpm 5.7 MB/s | 26 kB 00:00 (209/246): python-pip-wheel-23.1.2-2.fc39.noarc 102 MB/s | 1.4 MB 00:00 (210/246): python3-appdirs-1.4.4-10.fc39.noarch 4.0 MB/s | 23 kB 00:00 (211/246): python3-brotli-1.0.9-12.fc39.x86_64. 43 MB/s | 319 kB 00:00 (212/246): python3-cairo-1.24.0-1.fc39.x86_64.r 16 MB/s | 125 kB 00:00 (213/246): python3-dateutil-2.8.2-9.fc39.noarch 67 MB/s | 344 kB 00:00 (214/246): python3-cycler-0.11.0-8.fc39.noarch. 1.9 MB/s | 21 kB 00:00 (215/246): python3-devel-3.12.0~b4-1.fc39.x86_6 60 MB/s | 272 kB 00:00 (216/246): python3-fs-2.4.16-3.fc39.noarch.rpm 46 MB/s | 272 kB 00:00 (217/246): python3-flaky-3.7.0-11.fc39.noarch.r 5.4 MB/s | 39 kB 00:00 (218/246): python3-kiwisolver-1.4.4-8.fc39.x86_ 2.8 MB/s | 66 kB 00:00 (219/246): python3-lxml-4.9.2-8.fc39.x86_64.rpm 59 MB/s | 1.4 MB 00:00 (220/246): python3-munkres-1.1.2-15.fc39.noarch 2.9 MB/s | 25 kB 00:00 (221/246): python3-numpy-f2py-1.24.4-1.fc39.x86 40 MB/s | 441 kB 00:00 (222/246): python3-olefile-0.46-20.fc39.noarch. 8.3 MB/s | 65 kB 00:00 (223/246): python3-libs-3.12.0~b4-1.fc39.x86_64 123 MB/s | 8.9 MB 00:00 (224/246): python3-packaging-23.1-3.fc39.noarch 7.2 MB/s | 105 kB 00:00 (225/246): python3-numpy-1.24.4-1.fc39.x86_64.r 122 MB/s | 7.5 MB 00:00 (226/246): python3-pillow-tk-10.0.0-1.fc39.x86_ 2.3 MB/s | 29 kB 00:00 (227/246): python3-pillow-10.0.0-1.fc39.x86_64. 50 MB/s | 867 kB 00:00 (228/246): python3-rpm-generators-14-6.fc39.noa 7.5 MB/s | 30 kB 00:00 (229/246): python3-pyparsing-3.0.9-10.fc39.noar 31 MB/s | 246 kB 00:00 (230/246): python3-rpm-macros-3.12-1.fc39.noarc 2.3 MB/s | 15 kB 00:00 (231/246): python3-six-1.16.0-11.fc39.noarch.rp 6.9 MB/s | 41 kB 00:00 (232/246): python3-setuptools-67.7.2-5.fc39.noa 124 MB/s | 1.4 MB 00:00 (233/246): python3-tkinter-3.12.0~b4-1.fc39.x86 44 MB/s | 382 kB 00:00 (234/246): rhash-1.4.3-2.fc38.x86_64.rpm 33 MB/s | 194 kB 00:00 (235/246): python3-wheel-0.40.0-3.fc39.noarch.r 14 MB/s | 146 kB 00:00 (236/246): vim-filesystem-9.0.1677-2.fc39.noarc 4.5 MB/s | 18 kB 00:00 (237/246): tcl-8.6.12-4.fc39.x86_64.rpm 52 MB/s | 1.1 MB 00:00 (238/246): tk-8.6.12-4.fc38.x86_64.rpm 85 MB/s | 1.6 MB 00:00 (239/246): xkbcomp-1.4.6-5.fc38.x86_64.rpm 7.6 MB/s | 101 kB 00:00 (240/246): xml-common-0.6.3-60.fc38.noarch.rpm 5.9 MB/s | 31 kB 00:00 (241/246): xkeyboard-config-2.39-1.fc39.noarch. 80 MB/s | 907 kB 00:00 (242/246): xorg-x11-server-common-1.20.14-23.fc 3.8 MB/s | 35 kB 00:00 (243/246): xorg-x11-proto-devel-2023.2-1.fc39.n 15 MB/s | 262 kB 00:00 (244/246): xorg-x11-server-Xvfb-1.20.14-23.fc39 59 MB/s | 888 kB 00:00 (245/246): zlib-devel-1.2.13-3.fc38.x86_64.rpm 7.9 MB/s | 45 kB 00:00 (246/246): xorg-x11-xauth-1.1.2-3.fc38.x86_64.r 3.4 MB/s | 36 kB 00:00 -------------------------------------------------------------------------------- Total 131 MB/s | 204 MB 00:01 Running 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Running transaction test Transaction test succeeded. 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perl-mro-1.28-499.fc39.x86_64 198/246 Verifying : perl-overload-1.37-499.fc39.noarch 199/246 Verifying : perl-overloading-0.02-499.fc39.noarch 200/246 Verifying : perl-parent-1:0.241-499.fc39.noarch 201/246 Verifying : perl-podlators-1:5.01-499.fc39.noarch 202/246 Verifying : perl-vars-1.05-499.fc39.noarch 203/246 Verifying : pixman-0.42.2-1.fc39.x86_64 204/246 Verifying : pybind11-devel-2.10.4-2.fc39.x86_64 205/246 Verifying : pyproject-rpm-macros-1.9.0-1.fc39.noarch 206/246 Verifying : python-pip-wheel-23.1.2-2.fc39.noarch 207/246 Verifying : python-rpm-macros-3.12-1.fc39.noarch 208/246 Verifying : python3-3.12.0~b4-1.fc39.x86_64 209/246 Verifying : python3-appdirs-1.4.4-10.fc39.noarch 210/246 Verifying : python3-brotli-1.0.9-12.fc39.x86_64 211/246 Verifying : python3-cairo-1.24.0-1.fc39.x86_64 212/246 Verifying : python3-cycler-0.11.0-8.fc39.noarch 213/246 Verifying : python3-dateutil-1:2.8.2-9.fc39.noarch 214/246 Verifying : python3-devel-3.12.0~b4-1.fc39.x86_64 215/246 Verifying : python3-flaky-3.7.0-11.fc39.noarch 216/246 Verifying : python3-fs-2.4.16-3.fc39.noarch 217/246 Verifying : python3-kiwisolver-1.4.4-8.fc39.x86_64 218/246 Verifying : python3-libs-3.12.0~b4-1.fc39.x86_64 219/246 Verifying : python3-lxml-4.9.2-8.fc39.x86_64 220/246 Verifying : python3-munkres-1.1.2-15.fc39.noarch 221/246 Verifying : python3-numpy-1:1.24.4-1.fc39.x86_64 222/246 Verifying : python3-numpy-f2py-1:1.24.4-1.fc39.x86_64 223/246 Verifying : python3-olefile-0.46-20.fc39.noarch 224/246 Verifying : python3-packaging-23.1-3.fc39.noarch 225/246 Verifying : python3-pillow-10.0.0-1.fc39.x86_64 226/246 Verifying : python3-pillow-tk-10.0.0-1.fc39.x86_64 227/246 Verifying : python3-pyparsing-3.0.9-10.fc39.noarch 228/246 Verifying : python3-rpm-generators-14-6.fc39.noarch 229/246 Verifying : python3-rpm-macros-3.12-1.fc39.noarch 230/246 Verifying : python3-setuptools-67.7.2-5.fc39.noarch 231/246 Verifying : python3-six-1.16.0-11.fc39.noarch 232/246 Verifying : python3-tkinter-3.12.0~b4-1.fc39.x86_64 233/246 Verifying : python3-wheel-1:0.40.0-3.fc39.noarch 234/246 Verifying : rhash-1.4.3-2.fc38.x86_64 235/246 Verifying : tcl-1:8.6.12-4.fc39.x86_64 236/246 Verifying : tk-1:8.6.12-4.fc38.x86_64 237/246 Verifying : vim-filesystem-2:9.0.1677-2.fc39.noarch 238/246 Verifying : xkbcomp-1.4.6-5.fc38.x86_64 239/246 Verifying : xkeyboard-config-2.39-1.fc39.noarch 240/246 Verifying : xml-common-0.6.3-60.fc38.noarch 241/246 Verifying : xorg-x11-proto-devel-2023.2-1.fc39.noarch 242/246 Verifying : xorg-x11-server-Xvfb-1.20.14-23.fc39.x86_64 243/246 Verifying : xorg-x11-server-common-1.20.14-23.fc39.x86_64 244/246 Verifying : xorg-x11-xauth-1:1.1.2-3.fc38.x86_64 245/246 Verifying : zlib-devel-1.2.13-3.fc38.x86_64 246/246 Installed: abattis-cantarell-vf-fonts-0.301-9.fc38.noarch annobin-docs-12.21-1.fc39.noarch annobin-plugin-gcc-12.21-1.fc39.x86_64 boost-1.81.0-5.fc39.x86_64 boost-atomic-1.81.0-5.fc39.x86_64 boost-chrono-1.81.0-5.fc39.x86_64 boost-container-1.81.0-5.fc39.x86_64 boost-context-1.81.0-5.fc39.x86_64 boost-contract-1.81.0-5.fc39.x86_64 boost-coroutine-1.81.0-5.fc39.x86_64 boost-date-time-1.81.0-5.fc39.x86_64 boost-devel-1.81.0-5.fc39.x86_64 boost-fiber-1.81.0-5.fc39.x86_64 boost-filesystem-1.81.0-5.fc39.x86_64 boost-graph-1.81.0-5.fc39.x86_64 boost-iostreams-1.81.0-5.fc39.x86_64 boost-json-1.81.0-5.fc39.x86_64 boost-locale-1.81.0-5.fc39.x86_64 boost-log-1.81.0-5.fc39.x86_64 boost-math-1.81.0-5.fc39.x86_64 boost-nowide-1.81.0-5.fc39.x86_64 boost-numpy3-1.81.0-5.fc39.x86_64 boost-program-options-1.81.0-5.fc39.x86_64 boost-python3-1.81.0-5.fc39.x86_64 boost-random-1.81.0-5.fc39.x86_64 boost-regex-1.81.0-5.fc39.x86_64 boost-serialization-1.81.0-5.fc39.x86_64 boost-stacktrace-1.81.0-5.fc39.x86_64 boost-system-1.81.0-5.fc39.x86_64 boost-test-1.81.0-5.fc39.x86_64 boost-thread-1.81.0-5.fc39.x86_64 boost-timer-1.81.0-5.fc39.x86_64 boost-type_erasure-1.81.0-5.fc39.x86_64 boost-wave-1.81.0-5.fc39.x86_64 cairo-1.17.8-4.fc39.x86_64 cmake-3.27.0-1.fc39.x86_64 cmake-data-3.27.0-1.fc39.noarch cmake-filesystem-3.27.0-1.fc39.x86_64 cmake-rpm-macros-3.27.0-1.fc39.noarch cpp-13.1.1-4.fc39.x86_64 default-fonts-core-sans-4.0-4.fc39.noarch dejavu-sans-fonts-2.37-20.fc38.noarch emacs-filesystem-1:28.2-6.fc39.noarch expat-2.5.0-2.fc38.x86_64 flexiblas-3.3.1-3.fc39.x86_64 flexiblas-netlib-3.3.1-3.fc39.x86_64 flexiblas-openblas-openmp-3.3.1-3.fc39.x86_64 fontconfig-2.14.2-3.fc39.x86_64 fonts-filesystem-1:2.0.5-11.fc38.noarch freeglut-3.4.0-3.fc39.x86_64 freeglut-devel-3.4.0-3.fc39.x86_64 freetype-2.13.1-1.fc39.x86_64 fribidi-1.0.13-1.fc39.x86_64 gc-8.2.2-3.fc38.x86_64 gcc-13.1.1-4.fc39.x86_64 gcc-c++-13.1.1-4.fc39.x86_64 gcc-plugin-annobin-13.1.1-4.fc39.x86_64 gl-manpages-1.1-28.20190306.fc39.noarch glib2-2.77.0-7.fc39.x86_64 glibc-devel-2.37.9000-17.fc39.x86_64 glibc-headers-x86-2.37.9000-17.fc39.noarch gnutls-3.8.0-6.fc39.x86_64 google-noto-fonts-common-20230601-3.fc39.noarch google-noto-sans-vf-fonts-20230601-3.fc39.noarch graphite2-1.3.14-12.fc39.x86_64 groff-base-1.23.0-1.fc39.x86_64 guile22-2.2.7-8.fc39.x86_64 harfbuzz-8.0.1-2.fc39.x86_64 hwdata-0.372-1.fc39.noarch jbigkit-libs-2.1-25.fc38.x86_64 jsoncpp-1.9.5-4.fc38.x86_64 kernel-headers-6.5.0-0.rc2.git0.1.fc39.x86_64 lcms2-2.15-1.fc39.x86_64 libICE-1.0.10-10.fc38.x86_64 libICE-devel-1.0.10-10.fc38.x86_64 libSM-1.2.3-12.fc38.x86_64 libSM-devel-1.2.3-12.fc38.x86_64 libX11-1.8.6-1.fc39.x86_64 libX11-common-1.8.6-1.fc39.noarch libX11-devel-1.8.6-1.fc39.x86_64 libX11-xcb-1.8.6-1.fc39.x86_64 libXau-1.0.11-2.fc38.x86_64 libXau-devel-1.0.11-2.fc38.x86_64 libXdmcp-1.1.3-10.fc38.x86_64 libXext-1.3.5-2.fc38.x86_64 libXext-devel-1.3.5-2.fc38.x86_64 libXfixes-6.0.0-5.fc38.x86_64 libXfixes-devel-6.0.0-5.fc38.x86_64 libXfont2-2.0.3-14.fc38.x86_64 libXft-2.3.8-2.fc39.x86_64 libXi-1.8.1-1.fc39.x86_64 libXi-devel-1.8.1-1.fc39.x86_64 libXmu-1.1.4-2.fc38.x86_64 libXmu-devel-1.1.4-2.fc38.x86_64 libXrender-0.9.11-2.fc38.x86_64 libXt-1.2.1-4.fc38.x86_64 libXt-devel-1.2.1-4.fc38.x86_64 libXxf86vm-1.1.5-2.fc38.x86_64 libb2-0.98.1-8.fc38.x86_64 libdrm-2.4.114-2.fc38.x86_64 libdrm-devel-2.4.114-2.fc38.x86_64 libfontenc-1.1.6-2.fc38.x86_64 libgfortran-13.1.1-4.fc39.x86_64 libglvnd-1:1.6.0-2.fc38.x86_64 libglvnd-core-devel-1:1.6.0-2.fc38.x86_64 libglvnd-devel-1:1.6.0-2.fc38.x86_64 libglvnd-egl-1:1.6.0-2.fc38.x86_64 libglvnd-gles-1:1.6.0-2.fc38.x86_64 libglvnd-glx-1:1.6.0-2.fc38.x86_64 libglvnd-opengl-1:1.6.0-2.fc38.x86_64 libicu-73.2-1.fc39.x86_64 libicu-devel-73.2-1.fc39.x86_64 libimagequant-4.0.1-4.fc39.x86_64 libjpeg-turbo-2.1.4-2.fc38.x86_64 libmpc-1.3.1-2.fc38.x86_64 libpciaccess-0.16-8.fc38.x86_64 libpciaccess-devel-0.16-8.fc38.x86_64 libpng-2:1.6.37-14.fc38.x86_64 libqhull_r-1:7.2.1-12.fc38.x86_64 libquadmath-13.1.1-4.fc39.x86_64 libquadmath-devel-13.1.1-4.fc39.x86_64 libraqm-0.8.0-4.fc38.x86_64 libstdc++-devel-13.1.1-4.fc39.x86_64 libtiff-4.4.0-5.fc38.x86_64 libtiff-devel-4.4.0-5.fc38.x86_64 libtool-ltdl-2.4.7-6.fc38.x86_64 libunwind-1.7.0-0.1.rc2.fc39.x86_64 libuv-1:1.46.0-1.fc39.x86_64 libwayland-client-1.22.0-1.fc39.x86_64 libwayland-server-1.22.0-1.fc39.x86_64 libwebp-1.3.1-1.fc39.x86_64 libxcb-1.13.1-11.fc38.x86_64 libxcb-devel-1.13.1-11.fc38.x86_64 libxcrypt-devel-4.4.36-1.fc39.x86_64 libxkbfile-1.1.1-2.fc38.x86_64 libxshmfence-1.3-12.fc38.x86_64 libxslt-1.1.38-2.fc39.x86_64 make-1:4.4.1-1.fc39.x86_64 mesa-libEGL-23.1.3-1.fc39.x86_64 mesa-libGL-23.1.3-1.fc39.x86_64 mesa-libGL-devel-23.1.3-1.fc39.x86_64 mesa-libGLU-9.0.1-8.fc38.x86_64 mesa-libGLU-devel-9.0.1-8.fc38.x86_64 mesa-libgbm-23.1.3-1.fc39.x86_64 mesa-libglapi-23.1.3-1.fc39.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 ncurses-6.4-5.20230520.fc39.x86_64 nettle-3.9.1-1.fc39.x86_64 openblas-0.3.21-4.fc38.x86_64 openblas-openmp-0.3.21-4.fc38.x86_64 openjpeg2-2.5.0-3.fc38.x86_64 perl-Carp-1.54-499.fc39.noarch perl-Class-Struct-0.68-499.fc39.noarch perl-DynaLoader-1.54-499.fc39.x86_64 perl-Encode-4:3.19-499.fc39.x86_64 perl-Errno-1.37-499.fc39.x86_64 perl-Exporter-5.77-499.fc39.noarch perl-Fcntl-1.15-499.fc39.x86_64 perl-File-Basename-2.86-499.fc39.noarch perl-File-Path-2.18-499.fc39.noarch perl-File-Temp-1:0.231.100-499.fc39.noarch perl-File-stat-1.13-499.fc39.noarch perl-Getopt-Long-1:2.54-499.fc39.noarch perl-Getopt-Std-1.13-499.fc39.noarch perl-HTTP-Tiny-0.088-1.fc39.noarch perl-IO-1.52-499.fc39.x86_64 perl-IPC-Open3-1.22-499.fc39.noarch perl-MIME-Base64-3.16-499.fc39.x86_64 perl-POSIX-2.13-499.fc39.x86_64 perl-PathTools-3.89-499.fc39.x86_64 perl-Pod-Escapes-1:1.07-499.fc39.noarch perl-Pod-Perldoc-3.28.01-500.fc39.noarch perl-Pod-Simple-1:3.45-3.fc39.noarch perl-Pod-Usage-4:2.03-499.fc39.noarch perl-Scalar-List-Utils-5:1.63-499.fc39.x86_64 perl-SelectSaver-1.02-499.fc39.noarch perl-Socket-4:2.037-2.fc39.x86_64 perl-Storable-1:3.32-499.fc39.x86_64 perl-Symbol-1.09-499.fc39.noarch perl-Term-ANSIColor-5.01-500.fc39.noarch perl-Term-Cap-1.18-499.fc39.noarch perl-Text-ParseWords-3.31-499.fc39.noarch perl-Text-Tabs+Wrap-2023.0511-2.fc39.noarch perl-Time-Local-2:1.350-2.fc39.noarch perl-constant-1.33-500.fc39.noarch perl-if-0.61.000-499.fc39.noarch perl-interpreter-4:5.38.0-499.fc39.x86_64 perl-libs-4:5.38.0-499.fc39.x86_64 perl-locale-1.10-499.fc39.noarch perl-macros-4:5.38.0-499.fc39.noarch perl-mro-1.28-499.fc39.x86_64 perl-overload-1.37-499.fc39.noarch perl-overloading-0.02-499.fc39.noarch perl-parent-1:0.241-499.fc39.noarch perl-podlators-1:5.01-499.fc39.noarch perl-vars-1.05-499.fc39.noarch pixman-0.42.2-1.fc39.x86_64 pybind11-devel-2.10.4-2.fc39.x86_64 pyproject-rpm-macros-1.9.0-1.fc39.noarch python-pip-wheel-23.1.2-2.fc39.noarch python-rpm-macros-3.12-1.fc39.noarch python3-3.12.0~b4-1.fc39.x86_64 python3-appdirs-1.4.4-10.fc39.noarch python3-brotli-1.0.9-12.fc39.x86_64 python3-cairo-1.24.0-1.fc39.x86_64 python3-contourpy-1.1.0-1.fc39.x86_64 python3-cycler-0.11.0-8.fc39.noarch python3-dateutil-1:2.8.2-9.fc39.noarch python3-devel-3.12.0~b4-1.fc39.x86_64 python3-flaky-3.7.0-11.fc39.noarch python3-fonttools-4.41.0-2.fc39.x86_64 python3-fs-2.4.16-3.fc39.noarch python3-kiwisolver-1.4.4-8.fc39.x86_64 python3-libs-3.12.0~b4-1.fc39.x86_64 python3-lxml-4.9.2-8.fc39.x86_64 python3-matplotlib-3.7.2-1.fc39.x86_64 python3-matplotlib-data-3.7.2-1.fc39.noarch python3-matplotlib-data-fonts-3.7.2-1.fc39.noarch python3-matplotlib-tk-3.7.2-1.fc39.x86_64 python3-munkres-1.1.2-15.fc39.noarch python3-numpy-1:1.24.4-1.fc39.x86_64 python3-numpy-f2py-1:1.24.4-1.fc39.x86_64 python3-olefile-0.46-20.fc39.noarch python3-packaging-23.1-3.fc39.noarch python3-pillow-10.0.0-1.fc39.x86_64 python3-pillow-tk-10.0.0-1.fc39.x86_64 python3-pyparsing-3.0.9-10.fc39.noarch python3-rpm-generators-14-6.fc39.noarch python3-rpm-macros-3.12-1.fc39.noarch python3-scipy-1.11.1-1.fc39.x86_64 python3-setuptools-67.7.2-5.fc39.noarch python3-six-1.16.0-11.fc39.noarch python3-tkinter-3.12.0~b4-1.fc39.x86_64 python3-wheel-1:0.40.0-3.fc39.noarch rhash-1.4.3-2.fc38.x86_64 tcl-1:8.6.12-4.fc39.x86_64 tk-1:8.6.12-4.fc38.x86_64 vim-filesystem-2:9.0.1677-2.fc39.noarch xkbcomp-1.4.6-5.fc38.x86_64 xkeyboard-config-2.39-1.fc39.noarch xml-common-0.6.3-60.fc38.noarch xorg-x11-proto-devel-2023.2-1.fc39.noarch xorg-x11-server-Xvfb-1.20.14-23.fc39.x86_64 xorg-x11-server-common-1.20.14-23.fc39.x86_64 xorg-x11-xauth-1:1.1.2-3.fc38.x86_64 zlib-devel-1.2.13-3.fc38.x86_64 Complete! Finish: build setup for smoldyn-2.67.3-6.fc39.src.rpm Start: rpmbuild smoldyn-2.67.3-6.fc39.src.rpm warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689984000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Kr0DFH + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Smoldyn-2.67.3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Smoldyn-2.67.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd Smoldyn-2.67.3 + /usr/bin/mkdir -p SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (smoldyn-fix_libpaths.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_libpaths --fuzz=0 Patch #0 (smoldyn-fix_libpaths.patch): patching file CMakeLists.txt Hunk #1 succeeded at 253 (offset 44 lines). Hunk #2 succeeded at 269 (offset 44 lines). Hunk #3 succeeded at 433 (offset 44 lines). Hunk #4 succeeded at 510 (offset 47 lines). Patch #1 (smoldyn-freeglut.patch): + echo 'Patch #1 (smoldyn-freeglut.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .freeglut --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 365 (offset 39 lines). Patch #2 (smoldyn-create_soname.patch): + echo 'Patch #2 (smoldyn-create_soname.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .create_soname --fuzz=0 patching file CMakeLists.txt Hunk #2 succeeded at 517 (offset 47 lines). Patch #3 (smoldyn-avoid_automatic_wheel.patch): + echo 'Patch #3 (smoldyn-avoid_automatic_wheel.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .avoid_automatic_wheel --fuzz=0 patching file source/python/CMakeLists.txt Hunk #1 succeeded at 20 (offset -3 lines). + echo 'Patch #4 (smoldyn-bug121.patch):' Patch #4 (smoldyn-bug121.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug121 --fuzz=0 patching file tests/test_api.py Patch #5 (smoldyn-bug123.patch): + echo 'Patch #5 (smoldyn-bug123.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug123 --fuzz=0 patching file tests/test_api.py + rm -rf source/MSVClibs + rm -rf source/pybind11 + rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake + rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen + rm -rf source/NextSubVolume/boost_include + rm -f 'source/vtk/*' + find . -type f -name '*.h' -exec chmod 0644 '{}' ';' + find . -type f -name '*.c' -exec chmod 0644 '{}' ';' + find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';' + sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt + cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt + cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt + find -name '*.pyc' -delete + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Av1wGE + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -B build -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DSMOLDYN_VERSION:STRING=2.67.3 -DSMOLDYN_VERSION_MAJOR:STRING=2 -DOPTION_TARGET_LIBSMOLDYN:BOOL=ON -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=ON -DPYBIND11_FINDPYTHON:BOOL=ON -Dpybind11_DIR:PATH=/usr/share/cmake/pybind11 -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -DOPTION_EXAMPLES:BOOL=OFF -DOPTION_DOCS:BOOL=OFF -- The CXX compiler identification is GNU 13.1.1 -- The C compiler identification is GNU 13.1.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Smoldyn version is set to: '2.67.3' -- Compiling for Smoldyn: ON -- Compiling for Libsmoldyn: ON -- Option to compile Smoldyn for VCell: OFF -- Option to cross-compile for Windows using MinGW: OFF -- Option to include NextSubvolume: ON -- Option to include VTK: OFF -- Option to compile with static libraries: OFF -- Option to include OpenGL support: ON -- Option to include LibTiff: ON -- Option to include Zlib: ON -- Option to incude Python module: ON -- Option to run Libsmoldyn examples: OFF -- Option to build documentation: OFF -- Performing Test C_FLAG_EXISTS -- Performing Test C_FLAG_EXISTS - Success -- Performing Test CXX_FLAG_EXISTS -- Performing Test CXX_FLAG_EXISTS - Success -- [COMPILER] Adding -Wno-unused-parameter -- Build type: Release -- Compiling on a Linux computer -- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' -- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl' -- Found OpenGL: /usr/lib64/libOpenGL.so -- OpenGL found: '/usr/include', '/usr/lib64/libGL.so;/usr/lib64/libGLU.so' -- Found GLUT: /usr/lib64/libglut.so -- Found TIFF: /usr/lib64/libtiff.so (found version "4.4.0") -- Found Libtiff: '/usr/include', '/usr/lib64/libtiff.so' -- Found Zlib: '/usr/include', '/usr/lib64/libz.so' -- Boost headers found: '/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include' -- Found Python3: /usr/bin/python3.12 (found version "3.12.0") found components: Interpreter Development Development.Module Development.Embed -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.10.4") -- [TEST] Found 15 test scripts -- Configuring done (1.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/Smoldyn-2.67.3/build + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 1%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o -MF CMakeFiles/nsv.dir/StructuredGrid.cpp.o.d -o CMakeFiles/nsv.dir/StructuredGrid.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/StructuredGrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 2%] Building C object source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o -MF CMakeFiles/Steve.dir/Geometry.c.o.d -o CMakeFiles/Steve.dir/Geometry.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Geometry.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 3%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o -MF CMakeFiles/nsv.dir/Species.cpp.o.d -o CMakeFiles/nsv.dir/Species.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 4%] Building C object source/libSteve/CMakeFiles/Steve.dir/List.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/List.c.o -MF CMakeFiles/Steve.dir/List.c.o.d -o CMakeFiles/Steve.dir/List.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/List.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 7%] Building C object source/libSteve/CMakeFiles/Steve.dir/math2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/math2.c.o -MF CMakeFiles/Steve.dir/math2.c.o.d -o CMakeFiles/Steve.dir/math2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/math2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 6%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o -MF CMakeFiles/Steve.dir/opengl2.c.o.d -o CMakeFiles/Steve.dir/opengl2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/opengl2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 11%] Building C object source/libSteve/CMakeFiles/Steve.dir/parse.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/parse.c.o -MF CMakeFiles/Steve.dir/parse.c.o.d -o CMakeFiles/Steve.dir/parse.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/parse.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 12%] Building C object source/libSteve/CMakeFiles/Steve.dir/queue.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/random2.c.o -MF CMakeFiles/Steve.dir/random2.c.o.d -o CMakeFiles/Steve.dir/random2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 14%] Building C object source/libSteve/CMakeFiles/Steve.dir/Rn.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Rn.c.o -MF CMakeFiles/Steve.dir/Rn.c.o.d -o CMakeFiles/Steve.dir/Rn.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Rn.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 16%] Building C object source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o -MF CMakeFiles/Steve.dir/RnSort.c.o.d -o CMakeFiles/Steve.dir/RnSort.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/RnSort.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 9%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -MF CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o.d -o CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 17%] Building C object source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o -MF CMakeFiles/Steve.dir/rxnparam.c.o.d -o CMakeFiles/Steve.dir/rxnparam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/rxnparam.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 19%] Building C object source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o -MF CMakeFiles/Steve.dir/SimCommand.c.o.d -o CMakeFiles/Steve.dir/SimCommand.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SimCommand.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 18%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -MF CMakeFiles/nsv.dir/Kairos.cpp.o.d -o CMakeFiles/nsv.dir/Kairos.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Kairos.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 22%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o -MF CMakeFiles/nsv.dir/Io.cpp.o.d -o CMakeFiles/nsv.dir/Io.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Io.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 20%] Building C object source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o -MF CMakeFiles/Steve.dir/Sphere.c.o.d -o CMakeFiles/Steve.dir/Sphere.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Sphere.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 23%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o -MF CMakeFiles/nsv.dir/Geometry.cpp.o.d -o CMakeFiles/nsv.dir/Geometry.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Geometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 24%] Building C object source/libSteve/CMakeFiles/Steve.dir/string2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/string2.c.o -MF CMakeFiles/Steve.dir/string2.c.o.d -o CMakeFiles/Steve.dir/string2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/string2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 27%] Building C object source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o -MF CMakeFiles/Steve.dir/SurfaceParam.c.o.d -o CMakeFiles/Steve.dir/SurfaceParam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SurfaceParam.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 28%] Building C object source/libSteve/CMakeFiles/Steve.dir/Zn.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Zn.c.o -MF CMakeFiles/Steve.dir/Zn.c.o.d -o CMakeFiles/Steve.dir/Zn.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Zn.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Building C object source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o -MF CMakeFiles/Steve.dir/SFMT/SFMT.c.o.d -o CMakeFiles/Steve.dir/SFMT/SFMT.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target Steve make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 25%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o -MF CMakeFiles/nsv.dir/nsvc.cpp.o.d -o CMakeFiles/nsv.dir/nsvc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/nsvc.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target nsv make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 30%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 32%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 33%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 34%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 37%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 35%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 38%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS 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/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 39%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 40%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 41%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 44%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 43%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 49%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 51%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 54%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 60%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra 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CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib libsmoldyn_static.a make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Built target smoldyn_static make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 70%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 71%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 72%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 74%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 75%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 76%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 77%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 79%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 80%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 81%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolreact.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 82%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 83%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp:27: /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes] /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes] make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 85%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsurface.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 86%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Linking CXX shared library libsmoldyn_shared.so /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsmoldyn_shared.so.2 -o libsmoldyn_shared.so.2.67.3 CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so /usr/bin/cmake -E cmake_symlink_library libsmoldyn_shared.so.2.67.3 libsmoldyn_shared.so.2 libsmoldyn_shared.so /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv' 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 87%] Built target smoldyn_shared make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 88%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -MF CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o.d -o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 90%] Linking CXX executable smoldyn /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn libsmoldyn_shared.so.2.67.3 /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 90%] Built target smoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 87%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp:15: /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes] /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes] make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Linking CXX static library lib_pysmoldyn.a cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -P CMakeFiles/_pysmoldyn.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_pysmoldyn.dir/link.txt --verbose=1 /usr/bin/ar qc lib_pysmoldyn.a CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o ../libSteve/CMakeFiles/Steve.dir/Geometry.c.o ../libSteve/CMakeFiles/Steve.dir/List.c.o ../libSteve/CMakeFiles/Steve.dir/math2.c.o ../libSteve/CMakeFiles/Steve.dir/opengl2.c.o ../libSteve/CMakeFiles/Steve.dir/parse.c.o ../libSteve/CMakeFiles/Steve.dir/queue.c.o ../libSteve/CMakeFiles/Steve.dir/random2.c.o ../libSteve/CMakeFiles/Steve.dir/Rn.c.o ../libSteve/CMakeFiles/Steve.dir/RnSort.c.o ../libSteve/CMakeFiles/Steve.dir/rxnparam.c.o ../libSteve/CMakeFiles/Steve.dir/SimCommand.c.o ../libSteve/CMakeFiles/Steve.dir/Sphere.c.o ../libSteve/CMakeFiles/Steve.dir/string2.c.o ../libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o ../libSteve/CMakeFiles/Steve.dir/Zn.c.o ../libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o ../NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib lib_pysmoldyn.a make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Built target _pysmoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -MF CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o.d -o CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/CallbackFunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o -MF CMakeFiles/_smoldyn.dir/Command.cpp.o.d -o CMakeFiles/_smoldyn.dir/Command.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Command.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 95%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o -MF CMakeFiles/_smoldyn.dir/Simulation.cpp.o.d -o CMakeFiles/_smoldyn.dir/Simulation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Simulation.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 96%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/module.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/module.cpp.o -MF CMakeFiles/_smoldyn.dir/module.cpp.o.d -o CMakeFiles/_smoldyn.dir/module.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/module.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Linking CXX shared module /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o lib_pysmoldyn.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/strip /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1044:16: warning: type 'struct simstruct' violates the C++ One Definition Rule [-Wodr] 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a different type is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1104:19: note: the first difference of corresponding definitions is field 'callbacks' 1104 | CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback. | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a type with different number of fields is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv' 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Built target _smoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target copy_python_tree make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.12 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-312 creating build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/__init__.py -> build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/__main__.py -> build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/smoldyn.py -> build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/types.py -> build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/utils.py -> build/lib.linux-x86_64-cpython-312/smoldyn creating build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/__init__.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/__main__.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/_version.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/combine.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/data_model.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/utils.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so -> build/lib.linux-x86_64-cpython-312/smoldyn running build_ext installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn running install_egg_info running egg_info creating smoldyn.egg-info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt writing manifest file 'smoldyn.egg-info/SOURCES.txt' reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.67.3-py3.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/smoldyn-2.67.3.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.67.3.dist-info/METADATA' adding 'smoldyn-2.67.3.dist-info/WHEEL' adding 'smoldyn-2.67.3.dist-info/top_level.txt' adding 'smoldyn-2.67.3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer, pypa/build or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target wheel make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.6DXl7A + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/libSteve/CMakeFiles/Steve.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 19%] Built target Steve /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/NextSubVolume/CMakeFiles/nsv.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target nsv /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn_static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 49%] Built target smoldyn_static /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn_shared.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Built target smoldyn_shared /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 71%] Built target smoldyn /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/python/CMakeFiles/_pysmoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Built target _pysmoldyn /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/python/CMakeFiles/_smoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Built target _smoldyn /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Built target copy_python_tree /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.12 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build running bdist_wheel running build running build_py running build_ext /usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer, pypa/build or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn running install_egg_info running egg_info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.67.3-py3.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/smoldyn-2.67.3.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.67.3.dist-info/METADATA' adding 'smoldyn-2.67.3.dist-info/WHEEL' adding 'smoldyn-2.67.3.dist-info/top_level.txt' adding 'smoldyn-2.67.3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target wheel make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/bin/smoldyn -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/libsmoldyn_shared.so.2.67.3 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/libsmoldyn_shared.so.2 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/libsmoldyn_shared.so -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/libsmoldyn_static.a -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/include/smoldyn/libsmoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/include/smoldyn/smoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/include/smoldyn/smoldynconfigure.h make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' + pushd build/py ~/build/BUILD/Smoldyn-2.67.3/build/py ~/build/BUILD/Smoldyn-2.67.3 + mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/python3.12/site-packages + cp -a smoldyn smoldyn.egg-info /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/python3.12/site-packages/ + popd ~/build/BUILD/Smoldyn-2.67.3 + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.67.3-6.fc39 --unique-debug-suffix -2.67.3-6.fc39.x86_64 --unique-debug-src-base smoldyn-2.67.3-6.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/Smoldyn-2.67.3 find-debuginfo: starting Extracting debug info from 2 files DWARF-compressing 2 files sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/smoldyn-2.67.3-6.fc39.x86_64 3516 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.m4YVeq + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + cd build + export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64 + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64 + export PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/python3.12/site-packages + PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/python3.12/site-packages + xvfb-run ctest -j1 -VV -R 'test_api|test_sanity|test_biosimulator' --output-on-failure --debug /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:424 Here: 424 /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:709 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:436 Here: 436 /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:3036 * Read custom CTest configuration directory: /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:3041 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.cmake /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:3061 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.ctest /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:709 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:408 Test project /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:1783 Constructing a list of tests /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_actions /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_api /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_biosimulators /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_concurrent_simulation /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_connect_func /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_connect_var /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_data_in_array /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_data_outputfile /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_getters /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_issue_118 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_libsmoldyn /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_multiple_iterations /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_prd_placement /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_sanity /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_sim_from_file /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:1834 Done constructing a list of tests /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:984 Updating test list for fixtures /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:1207 Added 0 tests to meet fixture requirements /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:18 UTC /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:18 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestMultiProcessHandler.cxx:1414 Checking test dependency graph... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestMultiProcessHandler.cxx:1443 Checking test dependency graph end /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 2 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:526 Start 2: test_api /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:687 2: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_api.py" /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:695 2: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:703 2: Environment variables: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 2: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 2: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:18 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:804 2: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:983 1/3 Test #2: test_api ......................... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:986 Testing test_api ... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.23 sec /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:18 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 3 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:526 Start 3: test_biosimulators /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:687 3: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_biosimulators.py" /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:695 3: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:703 3: Environment variables: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 3: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 3: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:18 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:804 3: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 3: ssssssssssssssssssssssss /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 3: ---------------------------------------------------------------------- /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 3: Ran 24 tests in 0.000s /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 3: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 3: OK (skipped=24) /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:983 2/3 Test #3: test_biosimulators ............... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:986 Testing test_biosimulators ... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.25 sec /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:18 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 14 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:526 Start 14: test_sanity /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:687 14: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_sanity.py" /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:695 14: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:703 14: Environment variables: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 14: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 14: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:18 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:804 14: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 14: Using smoldyn from /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn/__init__.py /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 14: test_newcursim /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 14: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 14: Testing test_get_err /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 14: (, '') /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:983 3/3 Test #14: test_sanity ...................... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:986 Testing test_sanity ... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.20 sec /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:18 UTC /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:18 UTC /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:18 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:447 The following tests passed: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:452 test_api /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:452 test_biosimulators /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:452 test_sanity /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:613 100% tests passed, 0 tests failed out of 3 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:629 Total Test time (real) = 0.69 sec + RPM_EC=0 ++ jobs -p + exit 0 Processing files: smoldyn-2.67.3-6.fc39.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.5YqoVP + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/Using-Smoldyn-with-SED-ML-COMBINE-BioSimulators.md /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/README.md /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.67.3-6.fc39 smoldyn(x86-64) = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libsmoldyn_shared.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) rtld(GNU_HASH) Processing files: smoldyn-doc-2.67.3-6.fc39.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.8DEbtk + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/BioNetGen /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/CMakeLists.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/Doxyfile.in /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/README.md /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/SmolCrowd /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/SmolEmulate /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/Smoldyn /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/_static /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/build_doxygen /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/conf.py /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/doxygen /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/examples /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/index.rst /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/libSteve /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/python /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/requirements.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/tikz /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/user /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/wrl2smol /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: smoldyn-doc = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-libs-2.67.3-6.fc39.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Hr5gMR + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/smoldyn-libs + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/smoldyn-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsmoldyn_shared.so.2()(64bit) smoldyn-libs = 2.67.3-6.fc39 smoldyn-libs(x86-64) = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: glibc >= 2.37.9000-17 libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) rtld(GNU_HASH) Processing files: smoldyn-libs-devel-2.67.3-6.fc39.x86_64 Provides: smoldyn-libs-devel = 2.67.3-6.fc39 smoldyn-libs-devel(x86-64) = 2.67.3-6.fc39 smoldyn-libs-static = 0:2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsmoldyn_shared.so.2()(64bit) Processing files: python3-smoldyn-2.67.3-6.fc39.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.zCThjU + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/python3-smoldyn + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/python3-smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-smoldyn = 2.67.3-6.fc39 python3-smoldyn = 2.67.3-6.fc39 python3-smoldyn(x86-64) = 2.67.3-6.fc39 python3.12-smoldyn = 2.67.3-6.fc39 python3.12dist(smoldyn) = 2.67.3 python3dist(smoldyn) = 2.67.3 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: glibc >= 2.37.9000-17 libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) python(abi) = 3.12 rtld(GNU_HASH) Obsoletes: python-smoldyn < 2.67.3-6.fc39 Processing files: smoldyn-debugsource-2.67.3-6.fc39.x86_64 Provides: smoldyn-debugsource = 2.67.3-6.fc39 smoldyn-debugsource(x86-64) = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-debuginfo-2.67.3-6.fc39.x86_64 Provides: debuginfo(build-id) = a20d07e1cd01609907483e99c976fa37893fe91d smoldyn-debuginfo = 2.67.3-6.fc39 smoldyn-debuginfo(x86-64) = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(x86-64) = 2.67.3-6.fc39 Processing files: smoldyn-libs-debuginfo-2.67.3-6.fc39.x86_64 Provides: debuginfo(build-id) = d698915c964bb271f05d47003a4386c6fede0351 libsmoldyn_shared.so.2.67.3-2.67.3-6.fc39.x86_64.debug()(64bit) smoldyn-libs-debuginfo = 2.67.3-6.fc39 smoldyn-libs-debuginfo(x86-64) = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(x86-64) = 2.67.3-6.fc39 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64 Wrote: /builddir/build/RPMS/smoldyn-libs-debuginfo-2.67.3-6.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-smoldyn-2.67.3-6.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-devel-2.67.3-6.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.67.3-6.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-2.67.3-6.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.67.3-6.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-2.67.3-6.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-doc-2.67.3-6.fc39.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.CyQ5LY + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + /usr/bin/rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.nvD0PN + umask 022 + cd /builddir/build/BUILD + rm -rf Smoldyn-2.67.3 Smoldyn-2.67.3.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Finish: rpmbuild smoldyn-2.67.3-6.fc39.src.rpm Finish: build phase for smoldyn-2.67.3-6.fc39.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1689992057.917828/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1689992057.917828/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1689992057.917828/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-6.fc39.src.rpm) Config(child) 2 minutes 46 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool