Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c113' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8447500-fedora-41-i386 --chroot fedora-41-i386 Version: 1.2 PID: 25641 Logging PID: 25642 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8447500, 'buildroot_pkgs': [], 'chroot': 'fedora-41-i386', 'enable_net': False, 'fedora_review': False, 'git_hash': '229b053e13f0ee68d5df176c7010b93760195763', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.11.1/ProDy', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'ProDy', 'package_version': '2.4.1-9', 'project_dirname': 'python3-scipy-1.11.1', 'project_name': 'python3-scipy-1.11.1', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/python3-scipy-1.11.1/fedora-41-i386/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/python3-scipy-1.11.1--https://src.fedoraproject.org/user/sagitter', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'https://src.fedoraproject.org/user/sagitter', 'tags': [], 'task_id': '8447500-fedora-41-i386', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.11.1/ProDy /var/lib/copr-rpmbuild/workspace/workdir-dev2eajt/ProDy --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.11.1/ProDy', '/var/lib/copr-rpmbuild/workspace/workdir-dev2eajt/ProDy', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-dev2eajt/ProDy'... Running: git checkout 229b053e13f0ee68d5df176c7010b93760195763 -- cmd: ['git', 'checkout', '229b053e13f0ee68d5df176c7010b93760195763', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-dev2eajt/ProDy rc: 0 stdout: stderr: Note: switching to '229b053e13f0ee68d5df176c7010b93760195763'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 229b053 automatic import of ProDy Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-dev2eajt/ProDy rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading ProDy-2.4.1.tar.gz INFO: Reading stdout from command: curl --help all /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-dev2eajt/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-dev2eajt/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1735153139.661796 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-dev2eajt/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-dev2eajt/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1735153139.661796 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-dev2eajt/ProDy/ProDy.spec) Config(fedora-41-i686) Start: clean chroot Finish: clean chroot Mock Version: 6.0 INFO: Mock Version: 6.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-i686-bootstrap-1735153139.661796/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:41 INFO: Pulling image: registry.fedoraproject.org/fedora:41 INFO: Tagging container image as mock-bootstrap-0dcc415d-207a-44eb-9ab4-83617b06f9cc INFO: Checking that 1a20282ac0ad1eb0ef9ed049580007c7c6a30139828d8d53add2a6cc32ed4d07 image matches host's architecture INFO: Copy content of container 1a20282ac0ad1eb0ef9ed049580007c7c6a30139828d8d53add2a6cc32ed4d07 to /var/lib/mock/fedora-41-i686-bootstrap-1735153139.661796/root INFO: mounting 1a20282ac0ad1eb0ef9ed049580007c7c6a30139828d8d53add2a6cc32ed4d07 with podman image mount INFO: image 1a20282ac0ad1eb0ef9ed049580007c7c6a30139828d8d53add2a6cc32ed4d07 as /var/lib/containers/storage/overlay/a8c3459a7bd0224de6a1d3e3830255fc91a1ca4c00562a0dd71d93ff724d5bd5/merged INFO: umounting image 1a20282ac0ad1eb0ef9ed049580007c7c6a30139828d8d53add2a6cc32ed4d07 (/var/lib/containers/storage/overlay/a8c3459a7bd0224de6a1d3e3830255fc91a1ca4c00562a0dd71d93ff724d5bd5/merged) with podman image umount INFO: Removing image mock-bootstrap-0dcc415d-207a-44eb-9ab4-83617b06f9cc INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-i686-1735153139.661796/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-3.fc41.x86_64 dnf5-5.2.8.1-2.fc41.x86_64 dnf5-plugins-5.2.8.1-2.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: local 100% | 53.1 MiB/s | 12.7 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 47.0 MiB/s | 12.7 MiB | 00m00s Copr repository 100% | 1.9 MiB/s | 211.6 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash i686 5.2.37-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.3 MiB bzip2 i686 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 93.9 KiB coreutils i686 9.5-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.4 MiB cpio i686 2.15-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB diffutils i686 3.10-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB fedora-release noarch 42-0.11 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B findutils i686 1:4.10.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 MiB gawk i686 5.3.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB glibc-minimal-langpack i686 2.40.9000-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B grep i686 3.11-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB gzip i686 1.13-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 388.1 KiB info i686 7.1.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 368.5 KiB patch i686 2.7.6-25.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 298.0 KiB redhat-rpm-config noarch 296-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 186.6 KiB rpm-build i686 4.20.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 178.3 KiB sed i686 4.9-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 860.6 KiB shadow-utils i686 2:4.17.0~rc1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.0 MiB tar i686 2:1.35-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB unzip i686 6.0-65.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB util-linux i686 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.5 MiB which i686 2.21-42.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.9 KiB xz i686 1:5.6.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB Installing dependencies: add-determinism i686 0.5.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB alternatives i686 1.31-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64.0 KiB ansible-srpm-macros noarch 1-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.7 KiB audit-libs i686 4.0.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 341.8 KiB authselect i686 1.5.0-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 160.6 KiB authselect-libs i686 1.5.0-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 825.4 KiB basesystem noarch 11-21.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B binutils i686 2.43.50-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 26.0 MiB build-reproducibility-srpm-macros noarch 0.5.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 735.0 B bzip2-libs i686 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 76.0 KiB ca-certificates noarch 2024.2.69_v8.0.401-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB coreutils-common i686 9.5-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.2 MiB cracklib i686 2.9.11-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235.8 KiB crypto-policies noarch 20241128-1.gitbb7b0b0.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 137.3 KiB curl i686 8.11.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 455.2 KiB cyrus-sasl-lib i686 2.1.28-27.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB debugedit i686 5.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.9 KiB dwz i686 0.15-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 333.2 KiB ed i686 1.20.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 141.7 KiB efi-srpm-macros noarch 5-13.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.2 KiB elfutils i686 0.192-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB elfutils-debuginfod-client i686 0.192-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 79.8 KiB elfutils-default-yama-scope noarch 0.192-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf i686 0.192-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB elfutils-libs i686 0.192-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 708.9 KiB fedora-gpg-keys noarch 42-0.3 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 126.4 KiB fedora-release-common noarch 42-0.11 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.8 KiB fedora-release-identity-basic noarch 42-0.11 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 719.0 B fedora-repos noarch 42-0.3 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 KiB fedora-repos-rawhide noarch 42-0.3 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 KiB file i686 5.45-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 98.6 KiB file-libs i686 5.45-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.9 MiB filesystem i686 3.18-29.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.0 B fonts-srpm-macros noarch 1:2.0.5-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55.8 KiB forge-srpm-macros noarch 0.4.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38.9 KiB fpc-srpm-macros noarch 1.3-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0 B gdb-minimal i686 15.2-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13.3 MiB gdbm i686 1:1.23-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 449.8 KiB gdbm-libs i686 1:1.23-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 124.6 KiB ghc-srpm-macros noarch 1.9.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 779.0 B glibc i686 2.40.9000-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.5 MiB glibc-common i686 2.40.9000-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB glibc-gconv-extra i686 2.40.9000-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.5 MiB gmp i686 1:6.3.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 738.5 KiB gnat-srpm-macros noarch 6-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 KiB go-srpm-macros noarch 3.6.0-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 60.8 KiB jansson i686 2.14-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 92.4 KiB json-c i686 0.18-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 86.6 KiB kernel-srpm-macros noarch 1.0-24.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB keyutils-libs i686 1.6.3-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 57.6 KiB krb5-libs i686 1.21.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB libacl i686 2.3.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.3 KiB libarchive i686 3.7.7-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB libattr i686 2.5.2-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 23.8 KiB libblkid i686 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 285.5 KiB libbrotli i686 1.1.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 859.5 KiB libcap i686 2.71-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 191.1 KiB libcap-ng i686 0.8.5-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.7 KiB libcom_err i686 1.47.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 62.4 KiB libcurl i686 8.11.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 856.9 KiB libeconf i686 0.7.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 61.9 KiB libevent i686 2.1.12-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 952.1 KiB libfdisk i686 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 410.3 KiB libffi i686 3.4.6-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.5 KiB libgcc i686 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 297.7 KiB libgomp i686 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 522.9 KiB libidn2 i686 2.3.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 324.3 KiB libmount i686 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 387.0 KiB libnghttp2 i686 1.64.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 177.8 KiB libnsl2 i686 2.0.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 57.2 KiB libpkgconf i686 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80.7 KiB libpsl i686 0.21.5-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 75.8 KiB libpwquality i686 1.4.5-11.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 410.6 KiB libselinux i686 3.8-0.rc3.1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 206.8 KiB libsemanage i686 3.8-0.rc3.1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 316.5 KiB libsepol i686 3.8-0.rc3.1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 871.4 KiB libsmartcols i686 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183.7 KiB libssh i686 0.11.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 611.6 KiB libssh-config noarch 0.11.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0 B libstdc++ i686 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.8 MiB libtasn1 i686 4.19.0-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 179.0 KiB libtirpc i686 1.3.6-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 219.5 KiB libtool-ltdl i686 2.5.4-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 71.4 KiB libunistring i686 1.1-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB libuuid i686 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.7 KiB libverto i686 0.3.2-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 28.8 KiB libxcrypt i686 4.4.36-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 280.5 KiB libxml2 i686 2.12.9-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB libzstd i686 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 727.1 KiB lua-libs i686 5.4.7-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 312.6 KiB lua-srpm-macros noarch 1-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 KiB lz4-libs i686 1.10.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.8 KiB mpfr i686 4.2.1-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 966.6 KiB ncurses-base noarch 6.5-2.20240629.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.3 KiB ncurses-libs i686 6.5-2.20240629.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 971.0 KiB ocaml-srpm-macros noarch 10-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B openldap i686 2.6.8-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 676.2 KiB openssl-libs i686 1:3.2.2-9.fc41 local 6.3 MiB p11-kit i686 0.25.5-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB p11-kit-trust i686 0.25.5-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 370.0 KiB package-notes-srpm-macros noarch 0.5-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam i686 1.7.0-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB pam-libs i686 1.7.0-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 140.9 KiB pcre2 i686 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 660.1 KiB pcre2-syntax noarch 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-56.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf i686 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 87.0 KiB pkgconf-m4 noarch 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB pkgconf-pkg-config i686 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 979.0 B popt i686 1.19-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.0 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.16.3-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.8.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline i686 8.2-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 465.5 KiB rpm i686 4.20.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB rpm-build-libs i686 4.20.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.4 KiB rpm-libs i686 4.20.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 773.1 KiB rpm-sequoia i686 1.7.0-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB rust-srpm-macros noarch 26.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs i686 3.47.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB systemd-libs i686 257.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB util-linux-core i686 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB xxhash-libs i686 0.8.2-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 115.8 KiB xz-libs i686 1:5.6.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229.8 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip i686 3.0-42.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 703.6 KiB zlib-ng-compat i686 2.2.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.4 KiB zstd i686 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB Installing groups: build Transaction Summary: Installing: 154 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation, 179 MiB extra will be used (install 179 MiB, remove 0 B). [ 1/154] bzip2-0:1.0.8-19.fc41.i686 100% | 732.7 KiB/s | 52.8 KiB | 00m00s [ 2/154] coreutils-0:9.5-11.fc42.i686 100% | 11.6 MiB/s | 1.2 MiB | 00m00s [ 3/154] cpio-0:2.15-2.fc41.i686 100% | 7.3 MiB/s | 290.8 KiB | 00m00s [ 4/154] bash-0:5.2.37-1.fc42.i686 100% | 15.2 MiB/s | 1.8 MiB | 00m00s [ 5/154] diffutils-0:3.10-8.fc41.i686 100% | 18.8 MiB/s | 403.3 KiB | 00m00s [ 6/154] fedora-release-0:42-0.11.noar 100% | 721.2 KiB/s | 13.0 KiB | 00m00s [ 7/154] findutils-1:4.10.0-4.fc41.i68 100% | 24.5 MiB/s | 551.1 KiB | 00m00s [ 8/154] glibc-minimal-langpack-0:2.40 100% | 5.7 MiB/s | 121.9 KiB | 00m00s [ 9/154] gawk-0:5.3.0-4.fc41.i686 100% | 25.5 MiB/s | 1.0 MiB | 00m00s [ 10/154] grep-0:3.11-9.fc41.i686 100% | 13.7 MiB/s | 295.5 KiB | 00m00s [ 11/154] gzip-0:1.13-2.fc41.i686 100% | 8.8 MiB/s | 162.6 KiB | 00m00s [ 12/154] info-0:7.1.1-2.fc42.i686 100% | 10.1 MiB/s | 186.4 KiB | 00m00s [ 13/154] patch-0:2.7.6-25.fc41.i686 100% | 7.7 MiB/s | 142.2 KiB | 00m00s [ 14/154] redhat-rpm-config-0:296-1.fc4 100% | 4.3 MiB/s | 75.7 KiB | 00m00s [ 15/154] rpm-build-0:4.20.0-1.fc42.i68 100% | 4.1 MiB/s | 76.2 KiB | 00m00s [ 16/154] sed-0:4.9-3.fc41.i686 100% | 15.2 MiB/s | 311.4 KiB | 00m00s [ 17/154] shadow-utils-2:4.17.0~rc1-2.f 100% | 32.8 MiB/s | 1.2 MiB | 00m00s [ 18/154] unzip-0:6.0-65.fc42.i686 100% | 7.7 MiB/s | 181.1 KiB | 00m00s [ 19/154] tar-2:1.35-4.fc41.i686 100% | 26.5 MiB/s | 866.7 KiB | 00m00s [ 20/154] which-0:2.21-42.fc41.i686 100% | 2.4 MiB/s | 41.5 KiB | 00m00s [ 21/154] util-linux-0:2.40.2-8.fc42.i6 100% | 29.7 MiB/s | 1.2 MiB | 00m00s [ 22/154] xz-1:5.6.3-2.fc42.i686 100% | 8.9 MiB/s | 466.5 KiB | 00m00s [ 23/154] fedora-release-common-0:42-0. 100% | 1.2 MiB/s | 23.9 KiB | 00m00s [ 24/154] coreutils-common-0:9.5-11.fc4 100% | 46.6 MiB/s | 2.1 MiB | 00m00s [ 25/154] glibc-common-0:2.40.9000-24.f 100% | 18.6 MiB/s | 399.9 KiB | 00m00s [ 26/154] rpm-0:4.20.0-1.fc42.i686 100% | 19.6 MiB/s | 522.1 KiB | 00m00s [ 27/154] libblkid-0:2.40.2-8.fc42.i686 100% | 6.4 MiB/s | 137.5 KiB | 00m00s [ 28/154] glibc-0:2.40.9000-24.fc42.i68 100% | 37.4 MiB/s | 2.0 MiB | 00m00s [ 29/154] libfdisk-0:2.40.2-8.fc42.i686 100% | 7.8 MiB/s | 176.0 KiB | 00m00s [ 30/154] libmount-0:2.40.2-8.fc42.i686 100% | 8.9 MiB/s | 163.3 KiB | 00m00s [ 31/154] libsmartcols-0:2.40.2-8.fc42. 100% | 5.0 MiB/s | 86.2 KiB | 00m00s [ 32/154] libuuid-0:2.40.2-8.fc42.i686 100% | 1.8 MiB/s | 30.6 KiB | 00m00s [ 33/154] util-linux-core-0:2.40.2-8.fc 100% | 23.8 MiB/s | 535.7 KiB | 00m00s [ 34/154] fedora-repos-0:42-0.3.noarch 100% | 574.5 KiB/s | 9.2 KiB | 00m00s [ 35/154] xz-libs-1:5.6.3-2.fc42.i686 100% | 6.3 MiB/s | 122.8 KiB | 00m00s [ 36/154] fedora-gpg-keys-0:42-0.3.noar 100% | 5.7 MiB/s | 123.4 KiB | 00m00s [ 37/154] fedora-repos-rawhide-0:42-0.3 100% | 461.2 KiB/s | 8.8 KiB | 00m00s [ 38/154] glibc-gconv-extra-0:2.40.9000 100% | 41.0 MiB/s | 1.5 MiB | 00m00s [ 39/154] rpm-build-libs-0:4.20.0-1.fc4 100% | 5.4 MiB/s | 105.0 KiB | 00m00s [ 40/154] rpm-libs-0:4.20.0-1.fc42.i686 100% | 15.1 MiB/s | 340.6 KiB | 00m00s [ 41/154] libselinux-0:3.8-0.rc3.1.fc42 100% | 5.2 MiB/s | 95.5 KiB | 00m00s [ 42/154] libsepol-0:3.8-0.rc3.1.fc42.i 100% | 17.7 MiB/s | 345.1 KiB | 00m00s [ 43/154] libxcrypt-0:4.4.36-12.fc42.i6 100% | 6.4 MiB/s | 117.8 KiB | 00m00s [ 44/154] ncurses-libs-0:6.5-2.20240629 100% | 17.3 MiB/s | 355.3 KiB | 00m00s [ 45/154] audit-libs-0:4.0.2-1.fc41.i68 100% | 6.0 MiB/s | 129.0 KiB | 00m00s [ 46/154] authselect-libs-0:1.5.0-8.fc4 100% | 8.8 MiB/s | 208.0 KiB | 00m00s [ 47/154] systemd-libs-0:257.1-1.fc42.i 100% | 20.6 MiB/s | 821.9 KiB | 00m00s [ 48/154] libcap-ng-0:0.8.5-3.fc41.i686 100% | 1.9 MiB/s | 33.2 KiB | 00m00s [ 49/154] pam-0:1.7.0-3.fc42.i686 100% | 24.7 MiB/s | 531.7 KiB | 00m00s [ 50/154] libeconf-0:0.7.5-1.fc42.i686 100% | 1.9 MiB/s | 35.1 KiB | 00m00s [ 51/154] authselect-0:1.5.0-8.fc42.i68 100% | 7.3 MiB/s | 142.3 KiB | 00m00s [ 52/154] pam-libs-0:1.7.0-3.fc42.i686 100% | 3.5 MiB/s | 60.4 KiB | 00m00s [ 53/154] zlib-ng-compat-0:2.2.2-1.fc42 100% | 4.6 MiB/s | 80.5 KiB | 00m00s [ 54/154] readline-0:8.2-11.fc42.i686 100% | 11.3 MiB/s | 219.0 KiB | 00m00s [ 55/154] bzip2-libs-0:1.0.8-19.fc41.i6 100% | 2.5 MiB/s | 41.3 KiB | 00m00s [ 56/154] libacl-0:2.3.2-2.fc41.i686 100% | 1.6 MiB/s | 26.0 KiB | 00m00s [ 57/154] libcap-0:2.71-1.fc42.i686 100% | 5.1 MiB/s | 88.2 KiB | 00m00s [ 58/154] libattr-0:2.5.2-4.fc41.i686 100% | 1.1 MiB/s | 18.5 KiB | 00m00s [ 59/154] libgcc-0:14.2.1-6.fc42.i686 100% | 7.9 MiB/s | 153.0 KiB | 00m00s [ 60/154] libsemanage-0:3.8-0.rc3.1.fc4 100% | 7.2 MiB/s | 125.0 KiB | 00m00s [ 61/154] setup-0:2.15.0-5.fc41.noarch 100% | 8.0 MiB/s | 148.3 KiB | 00m00s [ 62/154] libzstd-0:1.5.6-2.fc41.i686 100% | 14.0 MiB/s | 285.8 KiB | 00m00s [ 63/154] lua-libs-0:5.4.7-1.fc42.i686 100% | 7.3 MiB/s | 149.3 KiB | 00m00s [ 64/154] popt-0:1.19-7.fc41.i686 100% | 3.5 MiB/s | 61.5 KiB | 00m00s [ 65/154] rpm-sequoia-0:1.7.0-3.fc42.i6 100% | 26.3 MiB/s | 914.5 KiB | 00m00s [ 66/154] elfutils-libelf-0:0.192-7.fc4 100% | 8.9 MiB/s | 210.7 KiB | 00m00s [ 67/154] sqlite-libs-0:3.47.2-1.fc42.i 100% | 19.1 MiB/s | 742.8 KiB | 00m00s [ 68/154] elfutils-libs-0:0.192-7.fc42. 100% | 14.7 MiB/s | 286.6 KiB | 00m00s [ 69/154] elfutils-debuginfod-client-0: 100% | 2.3 MiB/s | 45.1 KiB | 00m00s [ 70/154] elfutils-0:0.192-7.fc42.i686 100% | 19.9 MiB/s | 529.5 KiB | 00m00s [ 71/154] file-0:5.45-8.fc42.i686 100% | 2.5 MiB/s | 48.6 KiB | 00m00s [ 72/154] file-libs-0:5.45-8.fc42.i686 100% | 25.9 MiB/s | 770.5 KiB | 00m00s [ 73/154] libgomp-0:14.2.1-6.fc42.i686 100% | 16.7 MiB/s | 359.2 KiB | 00m00s [ 74/154] jansson-0:2.14-1.fc42.i686 100% | 2.6 MiB/s | 47.1 KiB | 00m00s [ 75/154] debugedit-0:5.1-2.fc42.i686 100% | 4.5 MiB/s | 82.4 KiB | 00m00s [ 76/154] pkgconf-pkg-config-0:2.3.0-1. 100% | 523.8 KiB/s | 10.0 KiB | 00m00s [ 77/154] libarchive-0:3.7.7-1.fc42.i68 100% | 16.5 MiB/s | 455.9 KiB | 00m00s [ 78/154] pkgconf-0:2.3.0-1.fc42.i686 100% | 2.5 MiB/s | 45.5 KiB | 00m00s [ 79/154] pkgconf-m4-0:2.3.0-1.fc42.noa 100% | 795.6 KiB/s | 14.3 KiB | 00m00s [ 80/154] libpkgconf-0:2.3.0-1.fc42.i68 100% | 2.4 MiB/s | 41.7 KiB | 00m00s [ 81/154] binutils-0:2.43.50-9.fc42.i68 100% | 58.5 MiB/s | 6.0 MiB | 00m00s [ 82/154] zstd-0:1.5.6-2.fc41.i686 100% | 13.5 MiB/s | 455.8 KiB | 00m00s [ 83/154] curl-0:8.11.1-2.fc42.i686 100% | 10.5 MiB/s | 226.8 KiB | 00m00s [ 84/154] ansible-srpm-macros-0:1-16.fc 100% | 1.3 MiB/s | 20.8 KiB | 00m00s [ 85/154] build-reproducibility-srpm-ma 100% | 717.0 KiB/s | 11.5 KiB | 00m00s [ 86/154] efi-srpm-macros-0:5-13.fc42.n 100% | 1.4 MiB/s | 22.5 KiB | 00m00s [ 87/154] add-determinism-0:0.5.0-1.fc4 100% | 25.1 MiB/s | 898.3 KiB | 00m00s [ 88/154] dwz-0:0.15-8.fc42.i686 100% | 7.2 MiB/s | 147.1 KiB | 00m00s [ 89/154] fonts-srpm-macros-1:2.0.5-17. 100% | 1.6 MiB/s | 27.0 KiB | 00m00s [ 90/154] forge-srpm-macros-0:0.4.0-1.f 100% | 1.2 MiB/s | 19.8 KiB | 00m00s [ 91/154] fpc-srpm-macros-0:1.3-13.fc41 100% | 497.6 KiB/s | 8.0 KiB | 00m00s [ 92/154] ghc-srpm-macros-0:1.9.2-1.fc4 100% | 569.8 KiB/s | 9.1 KiB | 00m00s [ 93/154] gnat-srpm-macros-0:6-6.fc41.n 100% | 559.5 KiB/s | 9.0 KiB | 00m00s [ 94/154] go-srpm-macros-0:3.6.0-5.fc42 100% | 1.6 MiB/s | 28.0 KiB | 00m00s [ 95/154] kernel-srpm-macros-0:1.0-24.f 100% | 616.8 KiB/s | 9.9 KiB | 00m00s [ 96/154] lua-srpm-macros-0:1-14.fc41.n 100% | 554.9 KiB/s | 8.9 KiB | 00m00s [ 97/154] ocaml-srpm-macros-0:10-3.fc41 100% | 575.0 KiB/s | 9.2 KiB | 00m00s [ 98/154] openblas-srpm-macros-0:2-18.f 100% | 482.2 KiB/s | 7.7 KiB | 00m00s [ 99/154] package-notes-srpm-macros-0:0 100% | 614.3 KiB/s | 9.8 KiB | 00m00s [100/154] perl-srpm-macros-0:1-56.fc41. 100% | 532.0 KiB/s | 8.5 KiB | 00m00s [101/154] pyproject-srpm-macros-0:1.16. 100% | 866.6 KiB/s | 13.9 KiB | 00m00s [102/154] python-srpm-macros-0:3.13-3.f 100% | 1.4 MiB/s | 23.7 KiB | 00m00s [103/154] qt5-srpm-macros-0:5.15.15-1.f 100% | 556.2 KiB/s | 8.9 KiB | 00m00s [104/154] qt6-srpm-macros-0:6.8.1-4.fc4 100% | 545.2 KiB/s | 9.3 KiB | 00m00s [105/154] zig-srpm-macros-0:1-3.fc41.no 100% | 507.7 KiB/s | 8.1 KiB | 00m00s [106/154] rust-srpm-macros-0:26.3-3.fc4 100% | 711.7 KiB/s | 12.1 KiB | 00m00s [107/154] zip-0:3.0-42.fc42.i686 100% | 13.3 MiB/s | 259.2 KiB | 00m00s [108/154] ed-0:1.20.2-2.fc41.i686 100% | 4.7 MiB/s | 81.2 KiB | 00m00s [109/154] gdbm-1:1.23-7.fc41.i686 100% | 8.1 MiB/s | 149.5 KiB | 00m00s [110/154] gdbm-libs-1:1.23-7.fc41.i686 100% | 3.6 MiB/s | 59.8 KiB | 00m00s [111/154] libnsl2-0:2.0.1-2.fc41.i686 100% | 1.9 MiB/s | 30.7 KiB | 00m00s [112/154] libpwquality-0:1.4.5-11.fc41. 100% | 6.3 MiB/s | 109.0 KiB | 00m00s [113/154] libtirpc-0:1.3.6-1.fc42.i686 100% | 5.3 MiB/s | 102.7 KiB | 00m00s [114/154] ncurses-base-0:6.5-2.20240629 100% | 3.5 MiB/s | 63.8 KiB | 00m00s [115/154] libcom_err-0:1.47.1-6.fc42.i6 100% | 1.3 MiB/s | 27.1 KiB | 00m00s [116/154] openssl-libs-1:3.2.2-9.fc41.i 100% | 51.2 MiB/s | 2.3 MiB | 00m00s [117/154] krb5-libs-0:1.21.3-3.fc42.i68 100% | 25.5 MiB/s | 809.1 KiB | 00m00s [118/154] pcre2-0:10.44-1.fc41.1.i686 100% | 11.7 MiB/s | 240.0 KiB | 00m00s [119/154] cracklib-0:2.9.11-6.fc41.i686 100% | 4.5 MiB/s | 82.5 KiB | 00m00s [120/154] lz4-libs-0:1.10.0-1.fc41.i686 100% | 4.0 MiB/s | 73.5 KiB | 00m00s [121/154] libxml2-0:2.12.9-1.fc42.i686 100% | 23.5 MiB/s | 699.0 KiB | 00m00s [122/154] crypto-policies-0:20241128-1. 100% | 4.2 MiB/s | 73.7 KiB | 00m00s [123/154] keyutils-libs-0:1.6.3-4.fc41. 100% | 1.8 MiB/s | 32.0 KiB | 00m00s [124/154] libverto-0:0.3.2-9.fc41.i686 100% | 1.2 MiB/s | 21.2 KiB | 00m00s [125/154] basesystem-0:11-21.fc41.noarc 100% | 460.8 KiB/s | 7.4 KiB | 00m00s [126/154] filesystem-0:3.18-29.fc42.i68 100% | 34.5 MiB/s | 1.1 MiB | 00m00s [127/154] mpfr-0:4.2.1-5.fc41.i686 100% | 9.6 MiB/s | 385.0 KiB | 00m00s [128/154] fedora-release-identity-basic 100% | 861.6 KiB/s | 13.8 KiB | 00m00s [129/154] gmp-1:6.3.0-2.fc41.i686 100% | 5.7 MiB/s | 311.3 KiB | 00m00s [130/154] elfutils-default-yama-scope-0 100% | 779.1 KiB/s | 12.5 KiB | 00m00s [131/154] json-c-0:0.18-1.fc42.i686 100% | 2.8 MiB/s | 48.4 KiB | 00m00s [132/154] alternatives-0:1.31-1.fc42.i6 100% | 1.9 MiB/s | 39.9 KiB | 00m00s [133/154] libstdc++-0:14.2.1-6.fc42.i68 100% | 30.2 MiB/s | 957.2 KiB | 00m00s [134/154] pcre2-syntax-0:10.44-1.fc41.1 100% | 7.7 MiB/s | 149.9 KiB | 00m00s [135/154] libffi-0:3.4.6-3.fc42.i686 100% | 2.2 MiB/s | 38.0 KiB | 00m00s [136/154] ca-certificates-0:2024.2.69_v 100% | 21.5 MiB/s | 944.9 KiB | 00m00s [137/154] p11-kit-0:0.25.5-4.fc42.i686 100% | 22.4 MiB/s | 482.1 KiB | 00m00s [138/154] p11-kit-trust-0:0.25.5-4.fc42 100% | 8.0 MiB/s | 139.3 KiB | 00m00s [139/154] libtasn1-0:4.19.0-9.fc41.i686 100% | 3.9 MiB/s | 75.3 KiB | 00m00s [140/154] xxhash-libs-0:0.8.2-4.fc42.i6 100% | 2.7 MiB/s | 46.8 KiB | 00m00s [141/154] libcurl-0:8.11.1-2.fc42.i686 100% | 13.0 MiB/s | 386.2 KiB | 00m00s [142/154] libnghttp2-0:1.64.0-1.fc42.i6 100% | 4.3 MiB/s | 83.5 KiB | 00m00s [143/154] libssh-config-0:0.11.1-1.fc42 100% | 586.6 KiB/s | 9.4 KiB | 00m00s [144/154] libssh-0:0.11.1-1.fc42.i686 100% | 12.2 MiB/s | 250.0 KiB | 00m00s [145/154] libbrotli-0:1.1.0-5.fc41.i686 100% | 17.4 MiB/s | 339.4 KiB | 00m00s [146/154] libidn2-0:2.3.7-2.fc41.i686 100% | 6.1 MiB/s | 113.0 KiB | 00m00s [147/154] libpsl-0:0.21.5-4.fc41.i686 100% | 3.7 MiB/s | 64.7 KiB | 00m00s [148/154] openldap-0:2.6.8-6.fc42.i686 100% | 10.6 MiB/s | 260.9 KiB | 00m00s [149/154] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 31.1 MiB/s | 860.0 KiB | 00m00s [150/154] libevent-0:2.1.12-14.fc41.i68 100% | 10.4 MiB/s | 277.0 KiB | 00m00s [151/154] gdb-minimal-0:15.2-4.fc42.i68 100% | 32.0 MiB/s | 4.4 MiB | 00m00s [152/154] libtool-ltdl-0:2.5.4-1.fc42.i 100% | 2.1 MiB/s | 36.0 KiB | 00m00s [153/154] libunistring-0:1.1-8.fc41.i68 100% | 22.5 MiB/s | 553.3 KiB | 00m00s [154/154] publicsuffix-list-dafsa-0:202 100% | 3.3 MiB/s | 58.3 KiB | 00m00s -------------------------------------------------------------------------------- [154/154] Total 100% | 40.4 MiB/s | 52.8 MiB | 00m01s Running transaction [ 1/156] Verify package files 100% | 789.0 B/s | 154.0 B | 00m00s [ 2/156] Prepare transaction 100% | 1.8 KiB/s | 154.0 B | 00m00s [ 3/156] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 4/156] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/156] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB | 00m00s [ 6/156] Installing fedora-release-ide 100% | 0.0 B/s | 976.0 B | 00m00s [ 7/156] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 8/156] Installing fedora-gpg-keys-0: 100% | 18.7 MiB/s | 172.2 KiB | 00m00s [ 9/156] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/156] Installing fedora-release-com 100% | 11.8 MiB/s | 24.1 KiB | 00m00s [ 11/156] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/156] Installing setup-0:2.15.0-5.f 100% | 54.5 MiB/s | 726.1 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 13/156] Installing filesystem-0:3.18- 100% | 1.7 MiB/s | 212.1 KiB | 00m00s [ 14/156] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 15/156] Installing ncurses-base-0:6.5 100% | 38.2 MiB/s | 351.7 KiB | 00m00s [ 16/156] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [ 17/156] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [ 18/156] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 19/156] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [ 20/156] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [ 21/156] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [ 22/156] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [ 23/156] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [ 24/156] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [ 25/156] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 26/156] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [ 27/156] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [ 28/156] Installing pkgconf-m4-0:2.3.0 100% | 14.5 MiB/s | 14.8 KiB | 00m00s [ 29/156] Installing coreutils-common-0 100% | 266.4 MiB/s | 11.2 MiB | 00m00s [ 30/156] Installing libgcc-0:14.2.1-6. 100% | 146.2 MiB/s | 299.4 KiB | 00m00s [ 31/156] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 32/156] Installing ncurses-libs-0:6.5 100% | 159.1 MiB/s | 977.6 KiB | 00m00s [ 33/156] Installing glibc-0:2.40.9000- 100% | 203.9 MiB/s | 5.5 MiB | 00m00s [ 34/156] Installing bash-0:5.2.37-1.fc 100% | 287.8 MiB/s | 8.3 MiB | 00m00s [ 35/156] Installing glibc-common-0:2.4 100% | 129.9 MiB/s | 1.0 MiB | 00m00s [ 36/156] Installing glibc-gconv-extra- 100% | 145.1 MiB/s | 7.5 MiB | 00m00s [ 37/156] Installing zlib-ng-compat-0:2 100% | 146.8 MiB/s | 150.3 KiB | 00m00s [ 38/156] Installing xz-libs-1:5.6.3-2. 100% | 225.5 MiB/s | 230.9 KiB | 00m00s [ 39/156] Installing bzip2-libs-0:1.0.8 100% | 75.3 MiB/s | 77.1 KiB | 00m00s [ 40/156] Installing libuuid-0:2.40.2-8 100% | 40.8 MiB/s | 41.8 KiB | 00m00s [ 41/156] Installing readline-0:8.2-11. 100% | 228.3 MiB/s | 467.6 KiB | 00m00s [ 42/156] Installing popt-0:1.19-7.fc41 100% | 34.8 MiB/s | 142.6 KiB | 00m00s [ 43/156] Installing libblkid-0:2.40.2- 100% | 139.9 MiB/s | 286.6 KiB | 00m00s [ 44/156] Installing libxcrypt-0:4.4.36 100% | 138.3 MiB/s | 283.2 KiB | 00m00s [ 45/156] Installing libattr-0:2.5.2-4. 100% | 24.1 MiB/s | 24.7 KiB | 00m00s [ 46/156] Installing libacl-0:2.3.2-2.f 100% | 0.0 B/s | 40.1 KiB | 00m00s [ 47/156] Installing libzstd-0:1.5.6-2. 100% | 237.1 MiB/s | 728.4 KiB | 00m00s [ 48/156] Installing elfutils-libelf-0: 100% | 293.5 MiB/s | 1.2 MiB | 00m00s [ 49/156] Installing gmp-1:6.3.0-2.fc41 100% | 241.1 MiB/s | 740.7 KiB | 00m00s [ 50/156] Installing libstdc++-0:14.2.1 100% | 279.3 MiB/s | 2.8 MiB | 00m00s [ 51/156] Installing libeconf-0:0.7.5-1 100% | 62.1 MiB/s | 63.6 KiB | 00m00s [ 52/156] Installing gdbm-libs-1:1.23-7 100% | 8.2 MiB/s | 126.3 KiB | 00m00s [ 53/156] Installing crypto-policies-0: 100% | 14.5 MiB/s | 163.7 KiB | 00m00s [ 54/156] Installing mpfr-0:4.2.1-5.fc4 100% | 236.4 MiB/s | 968.2 KiB | 00m00s [ 55/156] Installing gawk-0:5.3.0-4.fc4 100% | 173.1 MiB/s | 1.7 MiB | 00m00s [ 56/156] Installing dwz-0:0.15-8.fc42. 100% | 163.4 MiB/s | 334.5 KiB | 00m00s [ 57/156] Installing unzip-0:6.0-65.fc4 100% | 405.1 MiB/s | 2.0 MiB | 00m00s [ 58/156] Installing file-libs-0:5.45-8 100% | 473.8 MiB/s | 9.9 MiB | 00m00s [ 59/156] Installing file-0:5.45-8.fc42 100% | 97.7 MiB/s | 100.1 KiB | 00m00s [ 60/156] Installing libsmartcols-0:2.4 100% | 180.5 MiB/s | 184.8 KiB | 00m00s [ 61/156] Installing libsepol-0:3.8-0.r 100% | 284.0 MiB/s | 872.4 KiB | 00m00s [ 62/156] Installing libcap-ng-0:0.8.5- 100% | 67.9 MiB/s | 69.5 KiB | 00m00s [ 63/156] Installing audit-libs-0:4.0.2 100% | 167.9 MiB/s | 343.9 KiB | 00m00s [ 64/156] Installing pam-libs-0:1.7.0-3 100% | 139.7 MiB/s | 143.0 KiB | 00m00s [ 65/156] Installing libcap-0:2.71-1.fc 100% | 63.8 MiB/s | 196.0 KiB | 00m00s [ 66/156] Installing systemd-libs-0:257 100% | 247.4 MiB/s | 2.2 MiB | 00m00s [ 67/156] Installing lua-libs-0:5.4.7-1 100% | 153.2 MiB/s | 313.8 KiB | 00m00s [ 68/156] Installing libcom_err-0:1.47. 100% | 62.1 MiB/s | 63.6 KiB | 00m00s [ 69/156] Installing pcre2-0:10.44-1.fc 100% | 215.3 MiB/s | 661.5 KiB | 00m00s [ 70/156] Installing libselinux-0:3.8-0 100% | 203.1 MiB/s | 208.0 KiB | 00m00s [ 71/156] Installing sed-0:4.9-3.fc41.i 100% | 121.2 MiB/s | 868.8 KiB | 00m00s [ 72/156] Installing findutils-1:4.10.0 100% | 188.0 MiB/s | 1.9 MiB | 00m00s [ 73/156] Installing grep-0:3.11-9.fc41 100% | 125.8 MiB/s | 1.0 MiB | 00m00s [ 74/156] Installing xz-1:5.6.3-2.fc42. 100% | 123.9 MiB/s | 1.2 MiB | 00m00s [ 75/156] Installing libmount-0:2.40.2- 100% | 189.4 MiB/s | 388.0 KiB | 00m00s [ 76/156] Installing lz4-libs-0:1.10.0- 100% | 142.4 MiB/s | 145.9 KiB | 00m00s [ 77/156] Installing alternatives-0:1.3 100% | 64.0 MiB/s | 65.5 KiB | 00m00s [ 78/156] Installing libffi-0:3.4.6-3.f 100% | 81.0 MiB/s | 82.9 KiB | 00m00s [ 79/156] Installing libtasn1-0:4.19.0- 100% | 176.6 MiB/s | 180.8 KiB | 00m00s [ 80/156] Installing p11-kit-0:0.25.5-4 100% | 156.3 MiB/s | 2.3 MiB | 00m00s [ 81/156] Installing libunistring-0:1.1 100% | 289.0 MiB/s | 1.7 MiB | 00m00s [ 82/156] Installing elfutils-default-y 100% | 145.9 KiB/s | 2.0 KiB | 00m00s [ 83/156] Installing elfutils-libs-0:0. 100% | 173.5 MiB/s | 710.6 KiB | 00m00s [ 84/156] Installing libidn2-0:2.3.7-2. 100% | 80.6 MiB/s | 330.3 KiB | 00m00s [ 85/156] Installing libpsl-0:0.21.5-4. 100% | 75.1 MiB/s | 76.9 KiB | 00m00s [ 86/156] Installing p11-kit-trust-0:0. 100% | 21.4 MiB/s | 371.7 KiB | 00m00s [ 87/156] Installing openssl-libs-1:3.2 100% | 262.2 MiB/s | 6.3 MiB | 00m00s [ 88/156] Installing coreutils-0:9.5-11 100% | 132.5 MiB/s | 5.4 MiB | 00m00s [ 89/156] Installing ca-certificates-0: 100% | 1.0 MiB/s | 2.4 MiB | 00m02s [ 90/156] Installing gzip-0:1.13-2.fc41 100% | 96.1 MiB/s | 393.6 KiB | 00m00s [ 91/156] Installing authselect-libs-0: 100% | 91.2 MiB/s | 840.4 KiB | 00m00s [ 92/156] Installing cracklib-0:2.9.11- 100% | 34.5 MiB/s | 247.1 KiB | 00m00s [ 93/156] Installing libpwquality-0:1.4 100% | 51.6 MiB/s | 423.0 KiB | 00m00s [ 94/156] Installing rpm-sequoia-0:1.7. 100% | 256.9 MiB/s | 2.6 MiB | 00m00s [ 95/156] Installing libevent-0:2.1.12- 100% | 233.4 MiB/s | 955.9 KiB | 00m00s [ 96/156] Installing zstd-0:1.5.6-2.fc4 100% | 260.6 MiB/s | 1.6 MiB | 00m00s [ 97/156] Installing util-linux-core-0: 100% | 131.5 MiB/s | 1.4 MiB | 00m00s [ 98/156] Installing tar-2:1.35-4.fc41. 100% | 230.7 MiB/s | 3.0 MiB | 00m00s [ 99/156] Installing libsemanage-0:3.8- 100% | 103.6 MiB/s | 318.3 KiB | 00m00s [100/156] Installing shadow-utils-2:4.1 100% | 121.9 MiB/s | 4.0 MiB | 00m00s [101/156] Installing zip-0:3.0-42.fc42. 100% | 172.7 MiB/s | 707.5 KiB | 00m00s [102/156] Installing gdbm-1:1.23-7.fc41 100% | 111.0 MiB/s | 454.7 KiB | 00m00s [103/156] Installing cyrus-sasl-lib-0:2 100% | 248.1 MiB/s | 2.5 MiB | 00m00s [104/156] Installing libfdisk-0:2.40.2- 100% | 200.9 MiB/s | 411.5 KiB | 00m00s [105/156] Installing bzip2-0:1.0.8-19.f 100% | 48.1 MiB/s | 98.4 KiB | 00m00s [106/156] Installing libxml2-0:2.12.9-1 100% | 255.4 MiB/s | 1.8 MiB | 00m00s [107/156] Installing libarchive-0:3.7.7 100% | 245.6 MiB/s | 1.0 MiB | 00m00s [108/156] Installing sqlite-libs-0:3.47 100% | 250.1 MiB/s | 1.5 MiB | 00m00s [109/156] Installing rpm-libs-0:4.20.0- 100% | 252.1 MiB/s | 774.6 KiB | 00m00s [110/156] Installing add-determinism-0: 100% | 283.3 MiB/s | 2.3 MiB | 00m00s [111/156] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [112/156] Installing ed-0:1.20.2-2.fc41 100% | 140.6 MiB/s | 144.0 KiB | 00m00s [113/156] Installing patch-0:2.7.6-25.f 100% | 146.2 MiB/s | 299.5 KiB | 00m00s [114/156] Installing cpio-0:2.15-2.fc41 100% | 157.9 MiB/s | 1.1 MiB | 00m00s [115/156] Installing diffutils-0:3.10-8 100% | 177.2 MiB/s | 1.6 MiB | 00m00s [116/156] Installing libgomp-0:14.2.1-6 100% | 256.0 MiB/s | 524.3 KiB | 00m00s [117/156] Installing rpm-build-libs-0:4 100% | 205.3 MiB/s | 210.3 KiB | 00m00s [118/156] Installing jansson-0:2.14-1.f 100% | 91.6 MiB/s | 93.8 KiB | 00m00s [119/156] Installing libpkgconf-0:2.3.0 100% | 79.9 MiB/s | 81.8 KiB | 00m00s [120/156] Installing pkgconf-0:2.3.0-1. 100% | 43.7 MiB/s | 89.5 KiB | 00m00s [121/156] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [122/156] Installing keyutils-libs-0:1. 100% | 57.7 MiB/s | 59.1 KiB | 00m00s [123/156] Installing libverto-0:0.3.2-9 100% | 29.8 MiB/s | 30.6 KiB | 00m00s [124/156] Installing krb5-libs-0:1.21.3 100% | 211.7 MiB/s | 2.3 MiB | 00m00s [125/156] Installing libtirpc-0:1.3.6-1 100% | 108.1 MiB/s | 221.3 KiB | 00m00s [126/156] Installing libnsl2-0:2.0.1-2. 100% | 56.9 MiB/s | 58.3 KiB | 00m00s [127/156] Installing pam-0:1.7.0-3.fc42 100% | 76.2 MiB/s | 1.8 MiB | 00m00s [128/156] Installing libssh-0:0.11.1-1. 100% | 199.8 MiB/s | 613.7 KiB | 00m00s [129/156] Installing json-c-0:0.18-1.fc 100% | 85.8 MiB/s | 87.8 KiB | 00m00s [130/156] Installing xxhash-libs-0:0.8. 100% | 114.5 MiB/s | 117.2 KiB | 00m00s [131/156] Installing libnghttp2-0:1.64. 100% | 174.8 MiB/s | 179.0 KiB | 00m00s [132/156] Installing libbrotli-0:1.1.0- 100% | 210.4 MiB/s | 861.8 KiB | 00m00s [133/156] Installing libtool-ltdl-0:2.5 100% | 70.8 MiB/s | 72.5 KiB | 00m00s [134/156] Installing openldap-0:2.6.8-6 100% | 166.0 MiB/s | 680.0 KiB | 00m00s [135/156] Installing libcurl-0:8.11.1-2 100% | 209.5 MiB/s | 858.0 KiB | 00m00s [136/156] Installing elfutils-debuginfo 100% | 40.1 MiB/s | 82.1 KiB | 00m00s [137/156] Installing elfutils-0:0.192-7 100% | 236.4 MiB/s | 2.6 MiB | 00m00s [138/156] Installing binutils-0:2.43.50 100% | 260.4 MiB/s | 26.0 MiB | 00m00s [139/156] Installing gdb-minimal-0:15.2 100% | 302.9 MiB/s | 13.3 MiB | 00m00s [140/156] Installing debugedit-0:5.1-2. 100% | 103.8 MiB/s | 212.6 KiB | 00m00s [141/156] Installing curl-0:8.11.1-2.fc 100% | 20.3 MiB/s | 457.6 KiB | 00m00s [142/156] Installing rpm-0:4.20.0-1.fc4 100% | 88.8 MiB/s | 2.5 MiB | 00m00s [143/156] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [144/156] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [145/156] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [146/156] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [147/156] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [148/156] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [149/156] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [150/156] Installing redhat-rpm-config- 100% | 62.9 MiB/s | 193.2 KiB | 00m00s [151/156] Installing rpm-build-0:4.20.0 100% | 45.6 MiB/s | 186.8 KiB | 00m00s [152/156] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [153/156] Installing util-linux-0:2.40. 100% | 80.8 MiB/s | 3.6 MiB | 00m00s [154/156] Installing authselect-0:1.5.0 100% | 40.3 MiB/s | 165.0 KiB | 00m00s [155/156] Installing which-0:2.21-42.fc 100% | 79.2 MiB/s | 81.1 KiB | 00m00s [156/156] Installing info-0:7.1.1-2.fc4 100% | 124.0 KiB/s | 368.9 KiB | 00m03s Warning: skipped OpenPGP checks for 154 packages from repositories: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch, local Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.5.0-1.fc42.i686 alternatives-1.31-1.fc42.i686 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.i686 authselect-1.5.0-8.fc42.i686 authselect-libs-1.5.0-8.fc42.i686 basesystem-11-21.fc41.noarch bash-5.2.37-1.fc42.i686 binutils-2.43.50-9.fc42.i686 build-reproducibility-srpm-macros-0.5.0-1.fc42.noarch bzip2-1.0.8-19.fc41.i686 bzip2-libs-1.0.8-19.fc41.i686 ca-certificates-2024.2.69_v8.0.401-4.fc42.noarch coreutils-9.5-11.fc42.i686 coreutils-common-9.5-11.fc42.i686 cpio-2.15-2.fc41.i686 cracklib-2.9.11-6.fc41.i686 crypto-policies-20241128-1.gitbb7b0b0.fc42.noarch curl-8.11.1-2.fc42.i686 cyrus-sasl-lib-2.1.28-27.fc41.i686 debugedit-5.1-2.fc42.i686 diffutils-3.10-8.fc41.i686 dwz-0.15-8.fc42.i686 ed-1.20.2-2.fc41.i686 efi-srpm-macros-5-13.fc42.noarch elfutils-0.192-7.fc42.i686 elfutils-debuginfod-client-0.192-7.fc42.i686 elfutils-default-yama-scope-0.192-7.fc42.noarch elfutils-libelf-0.192-7.fc42.i686 elfutils-libs-0.192-7.fc42.i686 fedora-gpg-keys-42-0.3.noarch fedora-release-42-0.11.noarch fedora-release-common-42-0.11.noarch fedora-release-identity-basic-42-0.11.noarch fedora-repos-42-0.3.noarch fedora-repos-rawhide-42-0.3.noarch file-5.45-8.fc42.i686 file-libs-5.45-8.fc42.i686 filesystem-3.18-29.fc42.i686 findutils-4.10.0-4.fc41.i686 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc42.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.i686 gdb-minimal-15.2-4.fc42.i686 gdbm-1.23-7.fc41.i686 gdbm-libs-1.23-7.fc41.i686 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-24.fc42.i686 glibc-common-2.40.9000-24.fc42.i686 glibc-gconv-extra-2.40.9000-24.fc42.i686 glibc-minimal-langpack-2.40.9000-24.fc42.i686 gmp-6.3.0-2.fc41.i686 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-5.fc42.noarch grep-3.11-9.fc41.i686 gzip-1.13-2.fc41.i686 info-7.1.1-2.fc42.i686 jansson-2.14-1.fc42.i686 json-c-0.18-1.fc42.i686 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.i686 krb5-libs-1.21.3-3.fc42.i686 libacl-2.3.2-2.fc41.i686 libarchive-3.7.7-1.fc42.i686 libattr-2.5.2-4.fc41.i686 libblkid-2.40.2-8.fc42.i686 libbrotli-1.1.0-5.fc41.i686 libcap-2.71-1.fc42.i686 libcap-ng-0.8.5-3.fc41.i686 libcom_err-1.47.1-6.fc42.i686 libcurl-8.11.1-2.fc42.i686 libeconf-0.7.5-1.fc42.i686 libevent-2.1.12-14.fc41.i686 libfdisk-2.40.2-8.fc42.i686 libffi-3.4.6-3.fc42.i686 libgcc-14.2.1-6.fc42.i686 libgomp-14.2.1-6.fc42.i686 libidn2-2.3.7-2.fc41.i686 libmount-2.40.2-8.fc42.i686 libnghttp2-1.64.0-1.fc42.i686 libnsl2-2.0.1-2.fc41.i686 libpkgconf-2.3.0-1.fc42.i686 libpsl-0.21.5-4.fc41.i686 libpwquality-1.4.5-11.fc41.i686 libselinux-3.8-0.rc3.1.fc42.i686 libsemanage-3.8-0.rc3.1.fc42.i686 libsepol-3.8-0.rc3.1.fc42.i686 libsmartcols-2.40.2-8.fc42.i686 libssh-0.11.1-1.fc42.i686 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-6.fc42.i686 libtasn1-4.19.0-9.fc41.i686 libtirpc-1.3.6-1.fc42.i686 libtool-ltdl-2.5.4-1.fc42.i686 libunistring-1.1-8.fc41.i686 libuuid-2.40.2-8.fc42.i686 libverto-0.3.2-9.fc41.i686 libxcrypt-4.4.36-12.fc42.i686 libxml2-2.12.9-1.fc42.i686 libzstd-1.5.6-2.fc41.i686 lua-libs-5.4.7-1.fc42.i686 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.i686 mpfr-4.2.1-5.fc41.i686 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.i686 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-6.fc42.i686 openssl-libs-3.2.2-9.fc41.i686 p11-kit-0.25.5-4.fc42.i686 p11-kit-trust-0.25.5-4.fc42.i686 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.7.0-3.fc42.i686 pam-libs-1.7.0-3.fc42.i686 patch-2.7.6-25.fc41.i686 pcre2-10.44-1.fc41.1.i686 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.i686 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.i686 popt-1.19-7.fc41.i686 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.16.3-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.1-4.fc42.noarch readline-8.2-11.fc42.i686 redhat-rpm-config-296-1.fc42.noarch rpm-4.20.0-1.fc42.i686 rpm-build-4.20.0-1.fc42.i686 rpm-build-libs-4.20.0-1.fc42.i686 rpm-libs-4.20.0-1.fc42.i686 rpm-sequoia-1.7.0-3.fc42.i686 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.i686 setup-2.15.0-5.fc41.noarch shadow-utils-4.17.0~rc1-2.fc42.i686 sqlite-libs-3.47.2-1.fc42.i686 systemd-libs-257.1-1.fc42.i686 tar-1.35-4.fc41.i686 unzip-6.0-65.fc42.i686 util-linux-2.40.2-8.fc42.i686 util-linux-core-2.40.2-8.fc42.i686 which-2.21-42.fc41.i686 xxhash-libs-0.8.2-4.fc42.i686 xz-5.6.3-2.fc42.i686 xz-libs-5.6.3-2.fc42.i686 zig-srpm-macros-1-3.fc41.noarch zip-3.0-42.fc42.i686 zlib-ng-compat-2.2.2-1.fc42.i686 zstd-1.5.6-2.fc41.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1735084800 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-9.fc42.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-i686-1735153139.661796/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-dev2eajt/ProDy/ProDy.spec) Config(child) 0 minutes 25 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-9.fc42.src.rpm) Config(fedora-41-i686) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-i686-bootstrap-1735153139.661796/root. INFO: reusing tmpfs at /var/lib/mock/fedora-41-i686-bootstrap-1735153139.661796/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-i686-1735153139.661796/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-3.fc41.x86_64 dnf5-5.2.8.1-2.fc41.x86_64 dnf5-plugins-5.2.8.1-2.fc41.x86_64 Finish: chroot init Start: build phase for ProDy-2.4.1-9.fc42.src.rpm Start: build setup for ProDy-2.4.1-9.fc42.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1735084800 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-9.fc42.src.rpm Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 73.6 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 51.0 KiB/s | 1.5 KiB | 00m00s local 100% | 105.9 KiB/s | 3.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: gcc i686 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 104.6 MiB gcc-c++ i686 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.2 MiB python3-biopython i686 1.84-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 29.9 MiB python3-devel i686 3.13.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB python3-matplotlib i686 3.9.4-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21.0 MiB python3-nose noarch 1.3.7-61.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB python3-numpy i686 1:2.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41.5 MiB python3-scipy i686 1.14.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 69.1 MiB python3-setuptools noarch 74.1.3-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.4 MiB python3-urllib3 noarch 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.7 KiB annobin-docs noarch 12.80-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 98.6 KiB annobin-plugin-gcc i686 12.80-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 995.8 KiB cairo i686 1.18.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB cpp i686 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36.9 MiB default-fonts-core-sans noarch 4.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.9 KiB dejavu-sans-fonts noarch 2.37-24.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.5 MiB expat i686 2.6.4-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 288.0 KiB flex i686 2.6.4-18.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 787.3 KiB flexiblas i686 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 48.5 KiB flexiblas-netlib i686 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.5 MiB flexiblas-openblas-openmp i686 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30.6 KiB fontconfig i686 2.15.0-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 779.2 KiB fonts-filesystem noarch 1:2.0.5-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B freetype i686 2.13.3-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 854.4 KiB fribidi i686 1.0.16-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 196.5 KiB gcc-plugin-annobin i686 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 56.3 KiB glib2 i686 2.83.0-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 15.1 MiB glibc-devel i686 2.40.9000-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB gnutls i686 3.8.8-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.4 MiB google-noto-fonts-common noarch 20240901-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17.5 KiB google-noto-sans-vf-fonts noarch 20240901-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB graphite2 i686 1.3.14-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 194.5 KiB harfbuzz i686 10.1.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.7 MiB jbigkit-libs i686 2.1-30.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.2 KiB kernel-headers i686 6.13.0-0.rc4.36.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.5 MiB lcms2 i686 2.16-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 463.2 KiB libX11 i686 1.8.10-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB libX11-common noarch 1.8.10-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB libXau i686 1.0.12-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 71.1 KiB libXext i686 1.3.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 97.0 KiB libXft i686 2.3.8-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 167.6 KiB libXrender i686 0.9.12-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.9 KiB libasan i686 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB libatomic i686 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 23.5 KiB libb2 i686 0.98.1-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53.4 KiB libgfortran i686 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.9 MiB libimagequant i686 4.0.3-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 678.2 KiB libjpeg-turbo i686 3.0.4-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 853.0 KiB liblerc i686 4.0.0-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 646.9 KiB libmpc i686 1.3.1-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 168.0 KiB libpng i686 2:1.6.44-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 261.2 KiB libqhull_r i686 1:8.0.2-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 514.8 KiB libquadmath i686 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 509.2 KiB libraqm i686 0.10.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 32.0 KiB libstdc++-devel i686 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.9 MiB libtiff i686 4.7.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 654.7 KiB libubsan i686 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 534.7 KiB libwebp i686 1.5.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 858.5 KiB libxcb i686 1.17.0-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB libxcrypt-devel i686 4.4.36-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30.5 KiB m4 i686 1.4.19-10.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 596.2 KiB make i686 1:4.4.1-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB mpdecimal i686 2.5.1-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 204.1 KiB nettle i686 3.10-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 791.2 KiB openblas i686 0.3.28-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.6 KiB openblas-openmp i686 0.3.28-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22.5 MiB openjpeg i686 2.5.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 474.6 KiB pixman i686 0.44.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 711.7 KiB pyproject-rpm-macros noarch 1.16.3-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113.7 KiB python-pip-wheel noarch 24.3.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB python-rpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22.1 KiB python3 i686 3.13.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 29.8 KiB python3-cairo i686 1.25.1-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 485.9 KiB python3-charset-normalizer noarch 3.4.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 319.9 KiB python3-contourpy i686 1.3.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 816.3 KiB python3-cycler noarch 0.11.0-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.6 KiB python3-dateutil noarch 1:2.8.2-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 879.2 KiB python3-fonttools i686 4.55.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 18.1 MiB python3-idna noarch 3.10-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 628.0 KiB python3-kiwisolver i686 1.4.8-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 155.0 KiB python3-libs i686 3.13.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.5 MiB python3-matplotlib-data noarch 3.9.4-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 741.5 KiB python3-matplotlib-data-fonts noarch 3.9.4-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.9 MiB python3-matplotlib-tk i686 3.9.4-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 247.5 KiB python3-numpy-f2py i686 1:2.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB python3-olefile noarch 0.47-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 340.4 KiB python3-packaging noarch 24.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 555.7 KiB python3-pillow i686 11.0.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.9 MiB python3-pillow-tk i686 11.0.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 68.1 KiB python3-platformdirs noarch 4.2.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 168.6 KiB python3-pooch noarch 1.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 625.5 KiB python3-pyparsing noarch 3.1.2-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB python3-requests noarch 2.32.3-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 485.9 KiB python3-rpm-generators noarch 14-11.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.4 KiB python3-six noarch 1.16.0-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 118.3 KiB python3-tkinter i686 3.13.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 MiB tcl i686 1:8.6.15-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.4 MiB tk i686 1:8.6.15-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.7 MiB tzdata noarch 2024b-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB xml-common noarch 0.6.3-65.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB Transaction Summary: Installing: 102 packages Total size of inbound packages is 158 MiB. Need to download 158 MiB. After this operation, 559 MiB extra will be used (install 559 MiB, remove 0 B). [ 1/102] gcc-c++-0:14.2.1-6.fc42.i686 100% | 27.7 MiB/s | 14.3 MiB | 00m01s [ 2/102] python3-devel-0:3.13.1-2.fc42 100% | 12.5 MiB/s | 357.8 KiB | 00m00s [ 3/102] python3-biopython-0:1.84-4.fc 100% | 20.5 MiB/s | 11.6 MiB | 00m01s [ 4/102] python3-nose-0:1.3.7-61.fc42. 100% | 10.3 MiB/s | 327.8 KiB | 00m00s [ 5/102] python3-matplotlib-0:3.9.4-2. 100% | 29.2 MiB/s | 4.5 MiB | 00m00s [ 6/102] python3-numpy-1:2.2.1-1.fc42. 100% | 28.3 MiB/s | 7.7 MiB | 00m00s [ 7/102] python3-setuptools-0:74.1.3-4 100% | 24.5 MiB/s | 1.8 MiB | 00m00s [ 8/102] python3-urllib3-0:2.3.0-1.fc4 100% | 9.9 MiB/s | 264.4 KiB | 00m00s [ 9/102] gcc-0:14.2.1-6.fc42.i686 100% | 34.9 MiB/s | 36.7 MiB | 00m01s [ 10/102] libstdc++-devel-0:14.2.1-6.fc 100% | 23.6 MiB/s | 2.6 MiB | 00m00s [ 11/102] python3-0:3.13.1-2.fc42.i686 100% | 1.4 MiB/s | 26.8 KiB | 00m00s [ 12/102] cpp-0:14.2.1-6.fc42.i686 100% | 30.0 MiB/s | 12.0 MiB | 00m00s [ 13/102] python3-matplotlib-data-0:3.9 100% | 16.0 MiB/s | 509.3 KiB | 00m00s [ 14/102] python3-matplotlib-tk-0:3.9.4 100% | 5.9 MiB/s | 109.2 KiB | 00m00s [ 15/102] python3-scipy-0:1.14.1-2.fc42 100% | 22.5 MiB/s | 16.8 MiB | 00m01s [ 16/102] python3-numpy-f2py-1:2.2.1-1. 100% | 8.8 MiB/s | 448.4 KiB | 00m00s [ 17/102] python3-tkinter-0:3.13.1-2.fc 100% | 12.9 MiB/s | 355.7 KiB | 00m00s [ 18/102] python3-idna-0:3.10-1.fc42.no 100% | 6.1 MiB/s | 111.7 KiB | 00m00s [ 19/102] python3-libs-0:3.13.1-2.fc42. 100% | 25.5 MiB/s | 8.8 MiB | 00m00s [ 20/102] python3-matplotlib-data-fonts 100% | 27.4 MiB/s | 2.3 MiB | 00m00s [ 21/102] tcl-1:8.6.15-6.fc42.i686 100% | 19.2 MiB/s | 1.1 MiB | 00m00s [ 22/102] tk-1:8.6.15-1.fc42.i686 100% | 24.0 MiB/s | 1.6 MiB | 00m00s [ 23/102] python3-pooch-0:1.8.2-3.fc41. 100% | 6.5 MiB/s | 126.4 KiB | 00m00s [ 24/102] libgfortran-0:14.2.1-6.fc42.i 100% | 19.0 MiB/s | 856.0 KiB | 00m00s [ 25/102] flexiblas-netlib-0:3.4.4-3.fc 100% | 31.1 MiB/s | 3.2 MiB | 00m00s [ 26/102] python3-packaging-0:24.2-2.fc 100% | 7.8 MiB/s | 143.6 KiB | 00m00s [ 27/102] python3-platformdirs-0:4.2.2- 100% | 2.0 MiB/s | 41.0 KiB | 00m00s [ 28/102] python3-requests-0:2.32.3-3.f 100% | 8.1 MiB/s | 149.0 KiB | 00m00s [ 29/102] python3-pillow-tk-0:11.0.0-1. 100% | 1.8 MiB/s | 31.2 KiB | 00m00s [ 30/102] freetype-0:2.13.3-1.fc42.i686 100% | 14.1 MiB/s | 418.6 KiB | 00m00s [ 31/102] python3-pillow-0:11.0.0-1.fc4 100% | 18.5 MiB/s | 963.8 KiB | 00m00s [ 32/102] libqhull_r-1:8.0.2-5.fc41.i68 100% | 11.1 MiB/s | 215.7 KiB | 00m00s [ 33/102] dejavu-sans-fonts-0:2.37-24.f 100% | 22.5 MiB/s | 1.3 MiB | 00m00s [ 34/102] python3-cairo-0:1.25.1-5.fc41 100% | 7.0 MiB/s | 129.4 KiB | 00m00s [ 35/102] python3-contourpy-0:1.3.1-1.f 100% | 10.8 MiB/s | 276.7 KiB | 00m00s [ 36/102] python3-cycler-0:0.11.0-13.fc 100% | 1.2 MiB/s | 21.3 KiB | 00m00s [ 37/102] python3-dateutil-1:2.8.2-16.f 100% | 13.6 MiB/s | 349.0 KiB | 00m00s [ 38/102] python3-kiwisolver-0:1.4.8-1. 100% | 4.0 MiB/s | 69.6 KiB | 00m00s [ 39/102] expat-0:2.6.4-1.fc42.i686 100% | 6.5 MiB/s | 119.0 KiB | 00m00s [ 40/102] python3-pyparsing-0:3.1.2-7.f 100% | 10.6 MiB/s | 270.3 KiB | 00m00s [ 41/102] libb2-0:0.98.1-12.fc41.i686 100% | 1.7 MiB/s | 28.8 KiB | 00m00s [ 42/102] mpdecimal-0:2.5.1-16.fc41.i68 100% | 5.3 MiB/s | 91.9 KiB | 00m00s [ 43/102] tzdata-0:2024b-1.fc42.noarch 100% | 14.9 MiB/s | 428.6 KiB | 00m00s [ 44/102] python3-six-0:1.16.0-23.fc41. 100% | 2.4 MiB/s | 41.2 KiB | 00m00s [ 45/102] python-pip-wheel-0:24.3.1-1.f 100% | 23.6 MiB/s | 1.2 MiB | 00m00s [ 46/102] python3-fonttools-0:4.55.3-2. 100% | 23.9 MiB/s | 2.9 MiB | 00m00s [ 47/102] flex-0:2.6.4-18.fc41.i686 100% | 14.6 MiB/s | 284.9 KiB | 00m00s [ 48/102] cairo-0:1.18.2-2.fc42.i686 100% | 19.1 MiB/s | 743.1 KiB | 00m00s [ 49/102] libmpc-0:1.3.1-6.fc41.i686 100% | 3.6 MiB/s | 77.7 KiB | 00m00s [ 50/102] glibc-devel-0:2.40.9000-24.fc 100% | 20.6 MiB/s | 568.6 KiB | 00m00s [ 51/102] libatomic-0:14.2.1-6.fc42.i68 100% | 2.6 MiB/s | 42.0 KiB | 00m00s [ 52/102] libubsan-0:14.2.1-6.fc42.i686 100% | 12.9 MiB/s | 250.4 KiB | 00m00s [ 53/102] libasan-0:14.2.1-6.fc42.i686 100% | 15.8 MiB/s | 535.6 KiB | 00m00s [ 54/102] make-1:4.4.1-9.fc42.i686 100% | 21.3 MiB/s | 588.6 KiB | 00m00s [ 55/102] libpng-2:1.6.44-1.fc42.i686 100% | 6.6 MiB/s | 128.9 KiB | 00m00s [ 56/102] flexiblas-0:3.4.4-3.fc41.i686 100% | 1.5 MiB/s | 25.2 KiB | 00m00s [ 57/102] flexiblas-openblas-openmp-0:3 100% | 1.0 MiB/s | 17.3 KiB | 00m00s [ 58/102] harfbuzz-0:10.1.0-2.fc42.i686 100% | 20.5 MiB/s | 1.0 MiB | 00m00s [ 59/102] libquadmath-0:14.2.1-6.fc42.i 100% | 9.9 MiB/s | 252.6 KiB | 00m00s [ 60/102] m4-0:1.4.19-10.fc41.i686 100% | 14.8 MiB/s | 303.4 KiB | 00m00s [ 61/102] fonts-filesystem-1:2.0.5-17.f 100% | 499.0 KiB/s | 8.5 KiB | 00m00s [ 62/102] fontconfig-0:2.15.0-8.fc41.i6 100% | 10.4 MiB/s | 265.0 KiB | 00m00s [ 63/102] libX11-common-0:1.8.10-2.fc42 100% | 7.4 MiB/s | 144.8 KiB | 00m00s [ 64/102] libX11-0:1.8.10-2.fc42.i686 100% | 18.3 MiB/s | 673.8 KiB | 00m00s [ 65/102] libXext-0:1.3.6-2.fc41.i686 100% | 2.6 MiB/s | 42.2 KiB | 00m00s [ 66/102] libXrender-0:0.9.12-1.fc42.i6 100% | 1.6 MiB/s | 27.9 KiB | 00m00s [ 67/102] libxcb-0:1.17.0-3.fc42.i686 100% | 10.3 MiB/s | 253.6 KiB | 00m00s [ 68/102] libXft-0:2.3.8-7.fc41.i686 100% | 4.2 MiB/s | 73.3 KiB | 00m00s [ 69/102] pixman-0:0.44.2-1.fc42.i686 100% | 11.1 MiB/s | 283.6 KiB | 00m00s [ 70/102] python3-charset-normalizer-0: 100% | 5.5 MiB/s | 101.4 KiB | 00m00s [ 71/102] lcms2-0:2.16-4.fc41.i686 100% | 9.2 MiB/s | 197.6 KiB | 00m00s [ 72/102] libimagequant-0:4.0.3-5.fc41. 100% | 13.1 MiB/s | 322.1 KiB | 00m00s [ 73/102] libraqm-0:0.10.1-1.fc42.i686 100% | 1.4 MiB/s | 22.8 KiB | 00m00s [ 74/102] libjpeg-turbo-0:3.0.4-1.fc42. 100% | 9.7 MiB/s | 258.3 KiB | 00m00s [ 75/102] libtiff-0:4.7.0-2.fc42.i686 100% | 12.1 MiB/s | 236.1 KiB | 00m00s [ 76/102] openjpeg-0:2.5.3-2.fc42.i686 100% | 10.9 MiB/s | 200.4 KiB | 00m00s [ 77/102] python3-olefile-0:0.47-5.fc41 100% | 4.0 MiB/s | 74.6 KiB | 00m00s [ 78/102] libwebp-0:1.5.0-1.fc42.i686 100% | 11.2 MiB/s | 287.6 KiB | 00m00s [ 79/102] libXau-0:1.0.12-1.fc42.i686 100% | 1.9 MiB/s | 32.7 KiB | 00m00s [ 80/102] jbigkit-libs-0:2.1-30.fc41.i6 100% | 3.1 MiB/s | 53.7 KiB | 00m00s [ 81/102] liblerc-0:4.0.0-7.fc41.i686 100% | 11.9 MiB/s | 218.5 KiB | 00m00s [ 82/102] fribidi-0:1.0.16-1.fc42.i686 100% | 3.1 MiB/s | 54.3 KiB | 00m00s [ 83/102] graphite2-0:1.3.14-16.fc41.i6 100% | 4.5 MiB/s | 96.7 KiB | 00m00s [ 84/102] libxcrypt-devel-0:4.4.36-12.f 100% | 1.6 MiB/s | 27.8 KiB | 00m00s [ 85/102] kernel-headers-0:6.13.0-0.rc4 100% | 21.6 MiB/s | 1.5 MiB | 00m00s [ 86/102] gnutls-0:3.8.8-1.fc42.i686 100% | 23.8 MiB/s | 1.1 MiB | 00m00s [ 87/102] default-fonts-core-sans-0:4.2 100% | 1.4 MiB/s | 25.2 KiB | 00m00s [ 88/102] xml-common-0:0.6.3-65.fc41.no 100% | 1.8 MiB/s | 31.2 KiB | 00m00s [ 89/102] glib2-0:2.83.0-3.fc42.i686 100% | 27.4 MiB/s | 3.1 MiB | 00m00s [ 90/102] openblas-0:0.3.28-2.fc42.i686 100% | 2.3 MiB/s | 40.9 KiB | 00m00s [ 91/102] abattis-cantarell-vf-fonts-0: 100% | 6.5 MiB/s | 120.2 KiB | 00m00s [ 92/102] google-noto-fonts-common-0:20 100% | 1.0 MiB/s | 17.8 KiB | 00m00s [ 93/102] google-noto-sans-vf-fonts-0:2 100% | 17.1 MiB/s | 593.9 KiB | 00m00s [ 94/102] nettle-0:3.10-3.fc41.i686 100% | 16.6 MiB/s | 442.4 KiB | 00m00s [ 95/102] gcc-plugin-annobin-0:14.2.1-6 100% | 3.1 MiB/s | 57.4 KiB | 00m00s [ 96/102] python-rpm-macros-0:3.13-3.fc 100% | 929.9 KiB/s | 17.7 KiB | 00m00s [ 97/102] pyproject-rpm-macros-0:1.16.3 100% | 2.2 MiB/s | 44.6 KiB | 00m00s [ 98/102] python3-rpm-generators-0:14-1 100% | 1.7 MiB/s | 29.3 KiB | 00m00s [ 99/102] python3-rpm-macros-0:3.13-3.f 100% | 732.0 KiB/s | 12.4 KiB | 00m00s [100/102] annobin-docs-0:12.80-1.fc42.n 100% | 5.0 MiB/s | 92.6 KiB | 00m00s [101/102] openblas-openmp-0:0.3.28-2.fc 100% | 27.3 MiB/s | 3.9 MiB | 00m00s [102/102] annobin-plugin-gcc-0:12.80-1. 100% | 22.3 MiB/s | 979.7 KiB | 00m00s -------------------------------------------------------------------------------- [102/102] Total 100% | 66.7 MiB/s | 158.2 MiB | 00m02s Running transaction [ 1/104] Verify package files 100% | 199.0 B/s | 102.0 B | 00m01s [ 2/104] Prepare transaction 100% | 637.0 B/s | 102.0 B | 00m00s [ 3/104] Installing fonts-filesystem-1 100% | 769.5 KiB/s | 788.0 B | 00m00s [ 4/104] Installing python-rpm-macros- 100% | 22.3 MiB/s | 22.8 KiB | 00m00s [ 5/104] Installing python3-rpm-macros 100% | 0.0 B/s | 6.7 KiB | 00m00s [ 6/104] Installing python3-matplotlib 100% | 263.7 MiB/s | 7.9 MiB | 00m00s [ 7/104] Installing python3-matplotlib 100% | 82.3 MiB/s | 758.7 KiB | 00m00s [ 8/104] Installing tzdata-0:2024b-1.f 100% | 26.2 MiB/s | 1.9 MiB | 00m00s [ 9/104] Installing pyproject-rpm-macr 100% | 113.0 MiB/s | 115.7 KiB | 00m00s [ 10/104] Installing dejavu-sans-fonts- 100% | 306.0 MiB/s | 5.5 MiB | 00m00s [ 11/104] Installing abattis-cantarell- 100% | 94.9 MiB/s | 194.4 KiB | 00m00s [ 12/104] Installing annobin-docs-0:12. 100% | 97.4 MiB/s | 99.7 KiB | 00m00s [ 13/104] Installing google-noto-fonts- 100% | 0.0 B/s | 18.3 KiB | 00m00s [ 14/104] Installing 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Finish: build setup for ProDy-2.4.1-9.fc42.src.rpm Start: rpmbuild ProDy-2.4.1-9.fc42.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1735084800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.oEov8T + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + test -d /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/rm -rf /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ZrwZTV + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd /builddir/build/BUILD/ProDy-2.4.1-build + rm -rf ProDy-2.4.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ProDy-2.4.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd ProDy-2.4.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/Fix-rtbtools-to-permit-numpy-upgrade.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/eigh-evd-when-no-turbo.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find prody/proteins/ccealign -name '*.h' -exec chmod 0644 '{}' ';' + find prody/proteins/ccealign -name '*.cpp' -exec chmod 0644 '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.QO15Os + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-i686-cpython-313 creating build/lib.linux-i686-cpython-313/prody copying prody/__init__.py -> build/lib.linux-i686-cpython-313/prody creating build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/__init__.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/acceptor.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/angle.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/atom.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/atomgroup.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/atomic.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/atommap.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/bond.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/chain.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/crossterm.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/dihedral.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/donor.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/fields.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/flags.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/functions.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/hierview.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/improper.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/nbexclusion.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/pointer.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/residue.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/segment.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/select.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/selection.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/subset.py -> build/lib.linux-i686-cpython-313/prody/atomic creating build/lib.linux-i686-cpython-313/prody/database copying prody/database/__init__.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/cath.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/dali.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/goa.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/pfam.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/quartataweb.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/uniprot.py -> build/lib.linux-i686-cpython-313/prody/database creating build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/__init__.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/adaptive.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/analysis.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/anm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/bbenm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/bildfile.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/clustenm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/compare.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/editing.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/entropy.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/essa.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/exanm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/exgnm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/functions.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/gamma.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/gnm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/heatmapper.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/imanm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/mechstiff.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/mode.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/modeset.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/nma.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/nmdfile.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/pca.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/perturb.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/plotting.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/rtb.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/sampling.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/signature.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/vmdfile.py -> build/lib.linux-i686-cpython-313/prody/dynamics creating build/lib.linux-i686-cpython-313/prody/ensemble copying prody/ensemble/__init__.py -> build/lib.linux-i686-cpython-313/prody/ensemble copying prody/ensemble/conformation.py -> build/lib.linux-i686-cpython-313/prody/ensemble copying prody/ensemble/ensemble.py -> build/lib.linux-i686-cpython-313/prody/ensemble copying prody/ensemble/functions.py -> build/lib.linux-i686-cpython-313/prody/ensemble copying prody/ensemble/pdbensemble.py -> build/lib.linux-i686-cpython-313/prody/ensemble creating build/lib.linux-i686-cpython-313/prody/kdtree copying prody/kdtree/__init__.py -> build/lib.linux-i686-cpython-313/prody/kdtree copying prody/kdtree/kdtree.py -> build/lib.linux-i686-cpython-313/prody/kdtree creating build/lib.linux-i686-cpython-313/prody/measure copying prody/measure/__init__.py -> build/lib.linux-i686-cpython-313/prody/measure copying prody/measure/contacts.py -> build/lib.linux-i686-cpython-313/prody/measure copying prody/measure/measure.py -> build/lib.linux-i686-cpython-313/prody/measure copying prody/measure/transform.py -> build/lib.linux-i686-cpython-313/prody/measure creating build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/__init__.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/blastpdb.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/ciffile.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/cifheader.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/compare.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/dssp.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/emdfile.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/fixer.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/functions.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/header.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/localpdb.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/pdbclusters.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/pdbfile.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/starfile.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/stride.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/waterbridges.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/wwpdb.py -> build/lib.linux-i686-cpython-313/prody/proteins creating build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/__init__.py -> build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/analysis.py -> build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/msa.py -> build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/msafile.py -> build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/plotting.py -> build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/sequence.py -> build/lib.linux-i686-cpython-313/prody/sequence creating build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/__init__.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/dcdfile.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/frame.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/psffile.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/trajbase.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/trajectory.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/trajfile.py -> build/lib.linux-i686-cpython-313/prody/trajectory creating build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/__init__.py -> build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/cluster.py -> build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/functions.py -> build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/hic.py -> build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/norm.py -> build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/straw.py -> build/lib.linux-i686-cpython-313/prody/chromatin creating build/lib.linux-i686-cpython-313/prody/compounds copying prody/compounds/__init__.py -> build/lib.linux-i686-cpython-313/prody/compounds copying prody/compounds/bird.py -> build/lib.linux-i686-cpython-313/prody/compounds copying prody/compounds/ccd.py -> build/lib.linux-i686-cpython-313/prody/compounds copying prody/compounds/functions.py -> build/lib.linux-i686-cpython-313/prody/compounds copying prody/compounds/pdbligands.py -> build/lib.linux-i686-cpython-313/prody/compounds creating build/lib.linux-i686-cpython-313/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> build/lib.linux-i686-cpython-313/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> build/lib.linux-i686-cpython-313/prody/domain_decomposition creating build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/TreeConstruction.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/__init__.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/catchall.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/checkers.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/doctools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/drawtools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/eigtools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/laptools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/legacy.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/logger.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/misctools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/pathtools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/seqtools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/settings.py -> build/lib.linux-i686-cpython-313/prody/utilities creating build/lib.linux-i686-cpython-313/prody/apps copying prody/apps/__init__.py -> build/lib.linux-i686-cpython-313/prody/apps copying prody/apps/apptools.py -> build/lib.linux-i686-cpython-313/prody/apps creating build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_clustenm.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps creating build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps creating build/lib.linux-i686-cpython-313/prody/tests copying prody/tests/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests creating build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-i686-cpython-313/prody/tests/apps creating build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_select.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic creating build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/datafiles creating build/lib.linux-i686-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> build/lib.linux-i686-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> build/lib.linux-i686-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> build/lib.linux-i686-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> build/lib.linux-i686-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_lda.py -> build/lib.linux-i686-cpython-313/prody/tests/dynamics creating build/lib.linux-i686-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-i686-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-i686-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> build/lib.linux-i686-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-i686-cpython-313/prody/tests/ensemble creating build/lib.linux-i686-cpython-313/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-i686-cpython-313/prody/tests/kdtree creating build/lib.linux-i686-cpython-313/prody/tests/measure copying prody/tests/measure/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/measure copying prody/tests/measure/test_contacts.py -> build/lib.linux-i686-cpython-313/prody/tests/measure copying prody/tests/measure/test_measure.py -> build/lib.linux-i686-cpython-313/prody/tests/measure copying prody/tests/measure/test_transform.py -> build/lib.linux-i686-cpython-313/prody/tests/measure creating build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_header.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_fixer.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_waterbridges.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins creating build/lib.linux-i686-cpython-313/prody/tests/sequence copying prody/tests/sequence/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> build/lib.linux-i686-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> build/lib.linux-i686-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> build/lib.linux-i686-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> build/lib.linux-i686-cpython-313/prody/tests/sequence creating build/lib.linux-i686-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-i686-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> build/lib.linux-i686-cpython-313/prody/tests/trajectory creating build/lib.linux-i686-cpython-313/prody/tests/utilities copying prody/tests/utilities/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> build/lib.linux-i686-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> build/lib.linux-i686-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-i686-cpython-313/prody/tests/utilities creating build/lib.linux-i686-cpython-313/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> build/lib.linux-i686-cpython-313/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> build/lib.linux-i686-cpython-313/prody/utilities/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_h36.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_hex.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> build/lib.linux-i686-cpython-313/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build/temp.linux-i686-cpython-313 creating build/temp.linux-i686-cpython-313/prody creating build/temp.linux-i686-cpython-313/prody/dynamics gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/dynamics/rtbtools.c -o build/temp.linux-i686-cpython-313/prody/dynamics/rtbtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/dynamics/rtbtools.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/dynamics/rtbtools.cpython-313-i386-linux-gnu.so building 'prody.dynamics.smtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/dynamics/smtools.c -o build/temp.linux-i686-cpython-313/prody/dynamics/smtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/dynamics/smtools.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/dynamics/smtools.cpython-313-i386-linux-gnu.so building 'prody.sequence.msatools' extension creating build/temp.linux-i686-cpython-313/prody/sequence gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/sequence/msatools.c -o build/temp.linux-i686-cpython-313/prody/sequence/msatools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/sequence/msatools.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/sequence/msatools.cpython-313-i386-linux-gnu.so building 'prody.sequence.msaio' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/sequence/msaio.c -o build/temp.linux-i686-cpython-313/prody/sequence/msaio.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/sequence/msaio.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/sequence/msaio.cpython-313-i386-linux-gnu.so building 'prody.sequence.seqtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/sequence/seqtools.c -o build/temp.linux-i686-cpython-313/prody/sequence/seqtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/sequence/seqtools.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/sequence/seqtools.cpython-313-i386-linux-gnu.so building 'prody.kdtree._CKDTree' extension creating build/temp.linux-i686-cpython-313/prody/kdtree gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/kdtree/KDTree.c -o build/temp.linux-i686-cpython-313/prody/kdtree/KDTree.o gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-i686-cpython-313/prody/kdtree/KDTreemodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/kdtree/KDTree.o build/temp.linux-i686-cpython-313/prody/kdtree/KDTreemodule.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/kdtree/_CKDTree.cpython-313-i386-linux-gnu.so building 'prody.proteins.ccealign' extension creating build/temp.linux-i686-cpython-313/prody/proteins creating build/temp.linux-i686-cpython-313/prody/proteins/ccealign g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Iprody/utilities/tnt -I/usr/include/python3.13 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-i686-cpython-313/prody/proteins/ccealign/ccealignmodule.o g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/proteins/ccealign.cpython-313-i386-linux-gnu.so + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.WtzZsg + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + '[' /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build + mkdir /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT --prefix /usr running install /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13 creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody copying build/lib.linux-i686-cpython-313/prody/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/acceptor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/angle.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/atom.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/atomgroup.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/bond.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/chain.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/crossterm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/dihedral.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/donor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/fields.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/flags.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/improper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/nbexclusion.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/pointer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/residue.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/segment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/selection.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/cath.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/dali.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/goa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/pfam.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/quartataweb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/uniprot.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/adaptive.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/bbenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/bildfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/entropy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/essa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/exanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/exgnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/gamma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/heatmapper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/imanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/mechstiff.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/mode.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/modeset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/nma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/nmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/perturb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/rtb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/sampling.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/vmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/rtbtools.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/smtools.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-313/prody/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-313/prody/ensemble/conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-313/prody/ensemble/ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-313/prody/ensemble/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-313/prody/ensemble/pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree copying build/lib.linux-i686-cpython-313/prody/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree copying build/lib.linux-i686-cpython-313/prody/kdtree/kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree copying build/lib.linux-i686-cpython-313/prody/kdtree/_CKDTree.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure copying build/lib.linux-i686-cpython-313/prody/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure copying build/lib.linux-i686-cpython-313/prody/measure/contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure copying build/lib.linux-i686-cpython-313/prody/measure/measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure copying build/lib.linux-i686-cpython-313/prody/measure/transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/blastpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/cifheader.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/emdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/fixer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/pdbclusters.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/starfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/stride.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/waterbridges.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/ccealign.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/msatools.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/msaio.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/seqtools.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/psffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/trajbase.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/trajectory.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/trajfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/cluster.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/hic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/norm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/straw.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds copying build/lib.linux-i686-cpython-313/prody/compounds/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds copying build/lib.linux-i686-cpython-313/prody/compounds/bird.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds copying build/lib.linux-i686-cpython-313/prody/compounds/ccd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds copying build/lib.linux-i686-cpython-313/prody/compounds/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds copying build/lib.linux-i686-cpython-313/prody/compounds/pdbligands.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/domain_decomposition copying build/lib.linux-i686-cpython-313/prody/domain_decomposition/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/domain_decomposition copying build/lib.linux-i686-cpython-313/prody/domain_decomposition/spectrus.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/domain_decomposition creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/TreeConstruction.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/catchall.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/doctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/drawtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/eigtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/laptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/legacy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/logger.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/seqtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/settings.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-i686-cpython-313/prody/utilities/datafiles/mod_res_map.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-i686-cpython-313/prody/utilities/datafiles/saxs_water.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/datafiles creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps copying build/lib.linux-i686-cpython-313/prody/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps copying build/lib.linux-i686-cpython-313/prody/apps/apptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/nmaoptions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_align.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_biomol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_blast.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_eda.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_energy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_coevol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_conserv.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_filter.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_merge.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_occupancy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_rankorder.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_refine.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_search.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests copying build/lib.linux-i686-cpython-313/prody/tests/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/test_prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/test_prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/test_prody_examples.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/test_prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/test_prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_fragment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1ejg.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1r19_dssp.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1ubi.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1ubi_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb2k39_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb2k39_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb2nwl-opm.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb3hsy.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb3mht.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb3o21.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb3p3w.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb4v8r_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb4v8r_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdbRTER.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/anm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/anm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/commute1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/exanm2nwl_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/exanm2nwl_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/gnm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/gnm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/hit1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_Cys_knot_di.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pca2k39_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pca2k39_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/anm1ubi_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/exanm2nwl_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pca2k39_cov.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/rtb2gb1_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/rtb2gb1_project.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/dcd2k39_truncated.dcd -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/xmlSTI.xml -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_Cys_knot.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_Cys_knot.slx -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_Cys_knot.sth -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/mmcif_6yfy.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/mmcif_6zu5.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-313/prody/tests/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-313/prody/tests/dynamics/test_editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-313/prody/tests/dynamics/test_enms.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-313/prody/tests/dynamics/test_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-313/prody/tests/dynamics/test_signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-313/prody/tests/dynamics/test_lda.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-313/prody/tests/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-313/prody/tests/ensemble/test_conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-313/prody/tests/ensemble/test_ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-313/prody/tests/ensemble/test_functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-313/prody/tests/ensemble/test_pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/kdtree copying build/lib.linux-i686-cpython-313/prody/tests/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/kdtree copying build/lib.linux-i686-cpython-313/prody/tests/kdtree/test_kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/kdtree creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure copying build/lib.linux-i686-cpython-313/prody/tests/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure copying build/lib.linux-i686-cpython-313/prody/tests/measure/test_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure copying build/lib.linux-i686-cpython-313/prody/tests/measure/test_measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure copying build/lib.linux-i686-cpython-313/prody/tests/measure/test_transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_fixer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_waterbridges.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-313/prody/tests/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-313/prody/tests/sequence/test_analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-313/prody/tests/sequence/test_msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-313/prody/tests/sequence/test_msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-313/prody/tests/sequence/test_sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-i686-cpython-313/prody/tests/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-i686-cpython-313/prody/tests/trajectory/test_dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-i686-cpython-313/prody/tests/trajectory/test_frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-i686-cpython-313/prody/tests/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-i686-cpython-313/prody/tests/utilities/test_checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-i686-cpython-313/prody/tests/utilities/test_misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-i686-cpython-313/prody/tests/utilities/test_pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/acceptor.py to acceptor.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/angle.py to angle.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/atom.py to atom.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/atomgroup.py to atomgroup.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/atomic.py to atomic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/atommap.py to atommap.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/bond.py to bond.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/chain.py to chain.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/crossterm.py to crossterm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/dihedral.py to dihedral.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/donor.py to donor.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/fields.py to fields.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/flags.py to flags.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/hierview.py to hierview.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/improper.py to improper.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/pointer.py to pointer.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/residue.py to residue.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/segment.py to segment.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/select.py to select.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/selection.py to selection.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/subset.py to subset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/cath.py to cath.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/dali.py to dali.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/goa.py to goa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/pfam.py to pfam.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/quartataweb.py to quartataweb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/uniprot.py to uniprot.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/adaptive.py to adaptive.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/analysis.py to analysis.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/anm.py to anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/bbenm.py to bbenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/bildfile.py to bildfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/clustenm.py to clustenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/compare.py to compare.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/editing.py to editing.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/entropy.py to entropy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/essa.py to essa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/exanm.py to exanm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/exgnm.py to exgnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/gamma.py to gamma.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/gnm.py to gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/imanm.py to imanm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/mode.py to mode.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/modeset.py to modeset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/nma.py to nma.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/pca.py to pca.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/perturb.py to perturb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/plotting.py to plotting.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/rtb.py to rtb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/sampling.py to sampling.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/signature.py to signature.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble/conformation.py to conformation.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble/ensemble.py to ensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree/kdtree.py to kdtree.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure/contacts.py to contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure/measure.py to measure.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure/transform.py to transform.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/blastpdb.py to blastpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/ciffile.py to ciffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/cifheader.py to cifheader.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/compare.py to compare.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/dssp.py to dssp.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/emdfile.py to emdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/fixer.py to fixer.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/header.py to header.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/localpdb.py to localpdb.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/pdbfile.py to pdbfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/starfile.py to starfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/stride.py to stride.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/waterbridges.py to waterbridges.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/wwpdb.py to wwpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/analysis.py to analysis.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/msa.py to msa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/msafile.py to msafile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/plotting.py to plotting.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/sequence.py to sequence.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/frame.py to frame.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/psffile.py to psffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/trajbase.py to trajbase.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/trajectory.py to trajectory.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/trajfile.py to trajfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/cluster.py to cluster.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/hic.py to hic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/norm.py to norm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/straw.py to straw.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds/bird.py to bird.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds/ccd.py to ccd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds/pdbligands.py to pdbligands.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/domain_decomposition/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/catchall.py to catchall.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/checkers.py to checkers.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/doctools.py to doctools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/drawtools.py to drawtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/eigtools.py to eigtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/laptools.py to laptools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/legacy.py to legacy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/logger.py to logger.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/misctools.py to misctools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/pathtools.py to pathtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/seqtools.py to seqtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/settings.py to settings.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/apptools.py to apptools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_clustenm.py to prody_clustenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_select.py to test_select.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics/test_lda.py to test_lda.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/kdtree/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure/test_measure.py to test_measure.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure/test_transform.py to test_transform.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_header.py to test_header.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_fixer.py to test_fixer.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_waterbridges.py to test_waterbridges.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-313.pyc writing byte-compilation script '/tmp/tmpif3x1st8.py' /usr/bin/python3 /tmp/tmpif3x1st8.py /usr/lib/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' removing /tmp/tmpif3x1st8.py running install_egg_info running egg_info creating ProDy.egg-info writing ProDy.egg-info/PKG-INFO writing dependency_links to ProDy.egg-info/dependency_links.txt writing entry points to ProDy.egg-info/entry_points.txt writing requirements to ProDy.egg-info/requires.txt writing top-level names to ProDy.egg-info/top_level.txt writing manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'prody/*/*/*.c' warning: no files found matching 'prody/*/*.cpp' warning: no files found matching 'prody/utilities/datafiles/*.txt' adding license file 'LICENSE.rst' writing manifest file 'ProDy.egg-info/SOURCES.txt' Copying ProDy.egg-info to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/ProDy-2.4.1-py3.13.egg-info running install_scripts Installing evol script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin Installing prody script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + rm -rfv /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/__pycache__ + mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + rm -f /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody + cd scripts + cp -pr ./prody ./python3.13-prody + cp -pr ./evol ./python3.13-evol + sed -i '1s=^#!/usr/bin/\(python\|env python\)[0-9.]*=#!/usr/bin/python3=' ./prody ./evol ./python3.13-prody ./python3.13-evol + for i in prody-3.13 + touch -r ./python3.13-prody prody-3.13 + install -p prody-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + ln -sf /usr/bin/python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody-3.13 + for i in evol-3.13 + touch -r ./python3.13-evol evol-3.13 + install -p evol-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + ln -sf /usr/bin/python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol-3.13 + cd .. + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.4.1-9.fc42 --unique-debug-suffix -2.4.1-9.fc42.i386 --unique-debug-src-base ProDy-2.4.1-9.fc42.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1 find-debuginfo: starting Extracting debug info from 7 files DWARF-compressing 7 files sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/ProDy-2.4.1-9.fc42.i386 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13 using python3.13 /usr/lib/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/debug/usr/lib/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/angle.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/acceptor.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/atom.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/atomic.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/atommap.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/bond.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/chain.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/crossterm.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/dihedral.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/donor.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/fields.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/flags.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/functions.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/atomgroup.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/improper.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/hierview.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/nbexclusion.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/residue.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/segment.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/pointer.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/selection.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/subset.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/fields.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/__pycache__/cath.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/select.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/__pycache__/dali.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/__pycache__/goa.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/__pycache__/pfam.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/__pycache__/uniprot.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/__pycache__/adaptive.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/__pycache__/quartataweb.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/__pycache__/analysis.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/__pycache__/bbenm.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/__pycache__/anm.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/__pycache__/bildfile.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/__pycache__/compare.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/__pycache__/editing.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/__pycache__/entropy.cpython-313.pyc: rewriting with normalized contents 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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence/__pycache__/test_analysis.cpython-313.pyc: rewriting with normalized contents Scanned 88 directories and 723 files, processed 236 inodes, 236 modified (52 replaced + 184 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS/rpm-debuginfo.specpart Processing files: python3-ProDy-2.4.1-9.fc42.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.zEqPzk + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd ProDy-2.4.1 + DOCDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/README.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.pmXPHs + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd ProDy-2.4.1 + LICENSEDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/LICENSE.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol warning: absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody Provides: ProDy = 0:2.4.1-9.fc42 python-ProDy = 2.4.1-9.fc42 python3-ProDy = 2.4.1-9.fc42 python3-ProDy(x86-32) = 2.4.1-9.fc42 python3.13-ProDy = 2.4.1-9.fc42 python3.13dist(prody) = 2.4.1 python3dist(prody) = 2.4.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.13 python3.13dist(biopython) python3.13dist(numpy) >= 1.10 python3.13dist(pyparsing) <= 3.1.1 python3.13dist(scipy) python3.13dist(setuptools) Obsoletes: python-ProDy < 2.4.1-9.fc42 Processing files: ProDy-debugsource-2.4.1-9.fc42.i686 Provides: ProDy-debugsource = 2.4.1-9.fc42 ProDy-debugsource(x86-32) = 2.4.1-9.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-ProDy-debuginfo-2.4.1-9.fc42.i686 Provides: debuginfo(build-id) = 0f6836d3f8b91402a2ef89835076c3a23868da44 debuginfo(build-id) = 3fcab404be28a9a75b0e525b46aa2b9434fd1b23 debuginfo(build-id) = 5c5817d24dd2c4d584a9a50b509dd64160c1b7be debuginfo(build-id) = 84ca223a6f18194cff83fa5810bfa8540d7e0aa2 debuginfo(build-id) = 895114f4039bd1b908d16b887dedadfc530755ae debuginfo(build-id) = 8f90ccc834c9a594875d00a7512834e1a4c79976 debuginfo(build-id) = c27ed3dbd26dd3214fc0a17d2cbee9f67f321363 python-ProDy-debuginfo = 2.4.1-9.fc42 python3-ProDy-debuginfo = 2.4.1-9.fc42 python3-ProDy-debuginfo(x86-32) = 2.4.1-9.fc42 python3.13-ProDy-debuginfo = 2.4.1-9.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: ProDy-debugsource(x86-32) = 2.4.1-9.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT Wrote: /builddir/build/RPMS/python3-ProDy-debuginfo-2.4.1-9.fc42.i686.rpm Wrote: /builddir/build/RPMS/ProDy-debugsource-2.4.1-9.fc42.i686.rpm Wrote: /builddir/build/RPMS/python3-ProDy-2.4.1-9.fc42.i686.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.vuSxFd + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + test -d /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build + rm -rf /builddir/build/BUILD/ProDy-2.4.1-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody Finish: rpmbuild ProDy-2.4.1-9.fc42.src.rpm Finish: build phase for ProDy-2.4.1-9.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-i686-1735153139.661796/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-9.fc42.src.rpm) Config(child) 1 minutes 46 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "ProDy", "epoch": null, "version": "2.4.1", "release": "9.fc42", "arch": "src" }, { "name": "ProDy-debugsource", "epoch": null, "version": "2.4.1", "release": "9.fc42", "arch": "i686" }, { "name": "python3-ProDy", "epoch": null, "version": "2.4.1", "release": "9.fc42", "arch": "i686" }, { "name": "python3-ProDy-debuginfo", "epoch": null, "version": "2.4.1", "release": "9.fc42", "arch": "i686" } ] } RPMResults finished