Warning: Permanently added '3.87.176.154' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8095852-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.73 PID: 7382 Logging PID: 7383 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8095852, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'b4fd5bd4ded6064aa9dba73d9c2c66a3305a568b', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.11.1/ProDy', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'ProDy', 'package_version': '2.4.1-7', 'project_dirname': 'python3-scipy-1.11.1', 'project_name': 'python3-scipy-1.11.1', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/python3-scipy-1.11.1/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/python3-scipy-1.11.1--https://src.fedoraproject.org/user/msuchy', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/msuchy', 'tags': [], 'task_id': '8095852-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.11.1/ProDy /var/lib/copr-rpmbuild/workspace/workdir-ystiequg/ProDy --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-scipy-1.11.1/ProDy', '/var/lib/copr-rpmbuild/workspace/workdir-ystiequg/ProDy', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-ystiequg/ProDy'... Running: git checkout b4fd5bd4ded6064aa9dba73d9c2c66a3305a568b -- cmd: ['git', 'checkout', 'b4fd5bd4ded6064aa9dba73d9c2c66a3305a568b', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ystiequg/ProDy rc: 0 stdout: stderr: Note: switching to 'b4fd5bd4ded6064aa9dba73d9c2c66a3305a568b'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at b4fd5bd automatic import of ProDy Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ystiequg/ProDy rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading ProDy-2.4.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o ProDy-2.4.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/python3-scipy-1.11.1/ProDy/ProDy-2.4.1.tar.gz/md5/ed3fa7549c21d8c68ed832b970952fe4/ProDy-2.4.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 25.9M 100 25.9M 0 0 433M 0 --:--:-- --:--:-- --:--:-- 433M INFO: Reading stdout from command: md5sum ProDy-2.4.1.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ystiequg/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ystiequg/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727769680.503902 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ystiequg/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ystiequg/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727769680.503902 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-ystiequg/ProDy/ProDy.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1727769680.503902/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1727769680.503902/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/bf6c2df7cb3cace66b1b2f2c96aff85adbe807f83e2c16cb6a24d01c59045a8d/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/bf6c2df7cb3cace66b1b2f2c96aff85adbe807f83e2c16cb6a24d01c59045a8d/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1727769680.503902/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.94-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.6.2-1.fc42.x86_64 dnf5-plugins-5.2.6.2-1.fc42.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 45.4 MiB/s | 21.7 MiB | 00m00s Copr repository 100% | 2.3 MiB/s | 300.7 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 72.4 MiB/s | 14.3 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.32-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.2 MiB bzip2 x86_64 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 95.7 KiB coreutils x86_64 9.5-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.7 MiB cpio x86_64 2.15-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB diffutils x86_64 3.10-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB fedora-release-common noarch 42-0.3 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.4 KiB findutils x86_64 1:4.10.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB gawk x86_64 5.3.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB glibc-minimal-langpack x86_64 2.40.9000-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B grep x86_64 3.11-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB gzip x86_64 1.13-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 389.0 KiB info x86_64 7.1.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 361.9 KiB patch x86_64 2.7.6-25.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 266.7 KiB redhat-rpm-config noarch 296-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 186.6 KiB rpm-build x86_64 4.19.94-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 194.3 KiB sed x86_64 4.9-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.5 KiB shadow-utils x86_64 2:4.16.0-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.1 MiB tar x86_64 2:1.35-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.9 MiB unzip x86_64 6.0-64.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 386.8 KiB util-linux x86_64 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.7 MiB which x86_64 2.21-42.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80.2 KiB xz x86_64 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB Installing dependencies: add-determinism x86_64 0.3.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB alternatives x86_64 1.30-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 66.3 KiB ansible-srpm-macros noarch 1-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.7 KiB audit-libs x86_64 4.0.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 331.3 KiB authselect x86_64 1.5.0-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 153.5 KiB authselect-libs x86_64 1.5.0-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 818.3 KiB basesystem noarch 11-21.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B binutils x86_64 2.43.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 27.5 MiB build-reproducibility-srpm-macros noarch 0.3.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 735.0 B bzip2-libs x86_64 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB coreutils-common x86_64 9.5-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.2 MiB cracklib x86_64 2.9.11-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 238.9 KiB crypto-policies noarch 20240927-1.git93b7251.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.8 KiB curl x86_64 8.10.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 453.3 KiB cyrus-sasl-lib x86_64 2.1.28-27.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB debugedit x86_64 5.0-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 199.3 KiB dwz x86_64 0.15-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 290.9 KiB ed x86_64 1.20.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146.9 KiB efi-srpm-macros noarch 5-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils x86_64 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB elfutils-debuginfod-client x86_64 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64.9 KiB elfutils-default-yama-scope noarch 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf x86_64 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB elfutils-libs x86_64 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 646.2 KiB fedora-gpg-keys noarch 42-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 126.4 KiB fedora-release noarch 42-0.3 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B fedora-release-identity-basic noarch 42-0.3 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0 B fedora-repos noarch 42-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 KiB fedora-repos-rawhide noarch 42-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 KiB file x86_64 5.45-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.5 KiB file-libs x86_64 5.45-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.9 MiB filesystem x86_64 3.18-29.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.0 B fonts-srpm-macros noarch 1:2.0.5-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55.8 KiB forge-srpm-macros noarch 0.4.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38.9 KiB fpc-srpm-macros noarch 1.3-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0 B gdb-minimal x86_64 15.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13.0 MiB gdbm x86_64 1:1.23-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 460.9 KiB gdbm-libs x86_64 1:1.23-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121.9 KiB ghc-srpm-macros noarch 1.9.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 779.0 B glibc x86_64 2.40.9000-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.7 MiB glibc-common x86_64 2.40.9000-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB glibc-gconv-extra x86_64 2.40.9000-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.1 MiB gmp x86_64 1:6.3.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 811.4 KiB gnat-srpm-macros noarch 6-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 KiB go-srpm-macros noarch 3.6.0-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 60.8 KiB jansson x86_64 2.13.1-10.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.3 KiB kernel-srpm-macros noarch 1.0-24.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB keyutils-libs x86_64 1.6.3-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 54.4 KiB krb5-libs x86_64 1.21.3-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB libacl x86_64 2.3.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.0 KiB libarchive x86_64 3.7.6-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 934.8 KiB libattr x86_64 2.5.2-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 28.5 KiB libblkid x86_64 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262.5 KiB libbrotli x86_64 1.1.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 837.6 KiB libcap x86_64 2.70-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 220.2 KiB libcap-ng x86_64 0.8.5-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 69.2 KiB libcom_err x86_64 1.47.1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.2 KiB libcurl x86_64 8.10.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 838.4 KiB libeconf x86_64 0.6.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 58.0 KiB libevent x86_64 2.1.12-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 895.7 KiB libfdisk x86_64 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 362.9 KiB libffi x86_64 3.4.6-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 86.4 KiB libgcc x86_64 14.2.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 274.6 KiB libgomp x86_64 14.2.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 523.8 KiB libidn2 x86_64 2.3.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 329.1 KiB libmount x86_64 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 355.8 KiB libnghttp2 x86_64 1.63.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 170.1 KiB libnsl2 x86_64 2.0.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 57.9 KiB libpkgconf x86_64 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.2 KiB libpsl x86_64 0.21.5-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80.5 KiB libpwquality x86_64 1.4.5-11.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 417.8 KiB libselinux x86_64 3.7-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 181.1 KiB libsemanage x86_64 3.7-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 298.0 KiB libsepol x86_64 3.7-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 818.0 KiB libsmartcols x86_64 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 180.4 KiB libssh x86_64 0.11.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 569.6 KiB libssh-config noarch 0.11.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0 B libstdc++ x86_64 14.2.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.8 MiB libtasn1 x86_64 4.19.0-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 175.7 KiB libtirpc x86_64 1.3.5-0.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 202.7 KiB libtool-ltdl x86_64 2.4.7-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 66.2 KiB libunistring x86_64 1.1-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB libuuid x86_64 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41.4 KiB libverto x86_64 0.3.2-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 29.5 KiB libxcrypt x86_64 4.4.36-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 266.8 KiB libxml2 x86_64 2.12.8-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB libzstd x86_64 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 795.9 KiB lua-libs x86_64 5.4.6-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 285.0 KiB lua-srpm-macros noarch 1-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 KiB lz4-libs x86_64 1.10.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145.5 KiB mpfr x86_64 4.2.1-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 832.1 KiB ncurses-base noarch 6.5-2.20240629.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.3 KiB ncurses-libs x86_64 6.5-2.20240629.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 975.2 KiB ocaml-srpm-macros noarch 10-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B openldap x86_64 2.6.8-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 644.2 KiB openssl-libs x86_64 1:3.2.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.8 MiB p11-kit x86_64 0.25.5-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB p11-kit-trust x86_64 0.25.5-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 391.4 KiB package-notes-srpm-macros noarch 0.5-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam x86_64 1.6.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB pam-libs x86_64 1.6.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 139.0 KiB pcre2 x86_64 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-56.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf x86_64 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 989.0 B popt x86_64 1.19-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.15.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.7.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline x86_64 8.2-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 493.1 KiB rpm x86_64 4.19.94-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.1 MiB rpm-build-libs x86_64 4.19.94-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 206.7 KiB rpm-libs x86_64 4.19.94-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 722.1 KiB rpm-sequoia x86_64 1.7.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB rust-srpm-macros noarch 26.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs x86_64 3.46.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB systemd-libs x86_64 256.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB util-linux-core x86_64 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB xxhash-libs x86_64 0.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.5 KiB xz-libs x86_64 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 214.4 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip x86_64 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 703.2 KiB zlib-ng-compat x86_64 2.1.7-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 138.0 KiB zstd x86_64 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation, 180 MiB extra will be used (install 180 MiB, remove 0 B). [ 1/153] bzip2-0:1.0.8-19.fc41.x86_64 100% | 656.5 KiB/s | 52.5 KiB | 00m00s [ 2/153] bash-0:5.2.32-2.fc42.x86_64 100% | 19.2 MiB/s | 1.8 MiB | 00m00s [ 3/153] cpio-0:2.15-2.fc41.x86_64 100% | 19.9 MiB/s | 285.2 KiB | 00m00s [ 4/153] coreutils-0:9.5-10.fc42.x86_6 100% | 11.2 MiB/s | 1.1 MiB | 00m00s [ 5/153] diffutils-0:3.10-8.fc41.x86_6 100% | 38.8 MiB/s | 397.2 KiB | 00m00s [ 6/153] findutils-1:4.10.0-4.fc41.x86 100% | 58.6 MiB/s | 539.8 KiB | 00m00s [ 7/153] fedora-release-common-0:42-0. 100% | 1.9 MiB/s | 23.0 KiB | 00m00s [ 8/153] grep-0:3.11-9.fc41.x86_64 100% | 21.8 MiB/s | 289.7 KiB | 00m00s [ 9/153] glibc-minimal-langpack-0:2.40 100% | 5.9 MiB/s | 120.9 KiB | 00m00s [ 10/153] gawk-0:5.3.0-4.fc41.x86_64 100% | 40.7 MiB/s | 1.1 MiB | 00m00s [ 11/153] gzip-0:1.13-2.fc41.x86_64 100% | 11.4 MiB/s | 164.1 KiB | 00m00s [ 12/153] info-0:7.1.1-1.fc42.x86_64 100% | 14.9 MiB/s | 182.8 KiB | 00m00s [ 13/153] patch-0:2.7.6-25.fc41.x86_64 100% | 9.8 MiB/s | 131.0 KiB | 00m00s [ 14/153] redhat-rpm-config-0:296-1.fc4 100% | 8.2 MiB/s | 75.7 KiB | 00m00s [ 15/153] rpm-build-0:4.19.94-1.fc42.x8 100% | 10.5 MiB/s | 75.5 KiB | 00m00s [ 16/153] sed-0:4.9-3.fc41.x86_64 100% | 20.1 MiB/s | 309.3 KiB | 00m00s [ 17/153] tar-2:1.35-4.fc41.x86_64 100% | 48.9 MiB/s | 852.1 KiB | 00m00s [ 18/153] unzip-0:6.0-64.fc41.x86_64 100% | 9.5 MiB/s | 184.9 KiB | 00m00s [ 19/153] which-0:2.21-42.fc41.x86_64 100% | 4.5 MiB/s | 41.6 KiB | 00m00s [ 20/153] shadow-utils-2:4.16.0-4.fc42. 100% | 28.6 MiB/s | 1.3 MiB | 00m00s [ 21/153] util-linux-0:2.40.2-8.fc42.x8 100% | 43.0 MiB/s | 1.1 MiB | 00m00s [ 22/153] xz-1:5.6.2-2.fc41.x86_64 100% | 37.3 MiB/s | 457.8 KiB | 00m00s [ 23/153] xz-libs-1:5.6.2-2.fc41.x86_64 100% | 3.5 MiB/s | 111.8 KiB | 00m00s [ 24/153] audit-libs-0:4.0.2-1.fc41.x86 100% | 4.2 MiB/s | 126.2 KiB | 00m00s [ 25/153] glibc-0:2.40.9000-1.fc42.x86_ 100% | 49.7 MiB/s | 2.2 MiB | 00m00s [ 26/153] authselect-libs-0:1.5.0-7.fc4 100% | 12.5 MiB/s | 204.9 KiB | 00m00s [ 27/153] libcap-ng-0:0.8.5-3.fc41.x86_ 100% | 3.2 MiB/s | 32.6 KiB | 00m00s [ 28/153] libblkid-0:2.40.2-8.fc42.x86_ 100% | 6.8 MiB/s | 125.0 KiB | 00m00s [ 29/153] libfdisk-0:2.40.2-8.fc42.x86_ 100% | 12.0 MiB/s | 159.6 KiB | 00m00s [ 30/153] libselinux-0:3.7-6.fc42.x86_6 100% | 10.8 MiB/s | 88.6 KiB | 00m00s [ 31/153] libmount-0:2.40.2-8.fc42.x86_ 100% | 9.5 MiB/s | 156.1 KiB | 00m00s [ 32/153] libsmartcols-0:2.40.2-8.fc42. 100% | 5.5 MiB/s | 83.9 KiB | 00m00s [ 33/153] libuuid-0:2.40.2-8.fc42.x86_6 100% | 2.2 MiB/s | 29.0 KiB | 00m00s [ 34/153] pam-0:1.6.1-6.fc42.x86_64 100% | 46.0 MiB/s | 518.0 KiB | 00m00s [ 35/153] ncurses-libs-0:6.5-2.20240629 100% | 14.8 MiB/s | 334.0 KiB | 00m00s [ 36/153] pam-libs-0:1.6.1-6.fc42.x86_6 100% | 4.3 MiB/s | 57.2 KiB | 00m00s [ 37/153] readline-0:8.2-11.fc42.x86_64 100% | 17.4 MiB/s | 213.4 KiB | 00m00s [ 38/153] util-linux-core-0:2.40.2-8.fc 100% | 36.4 MiB/s | 521.5 KiB | 00m00s [ 39/153] systemd-libs-0:256.5-1.fc42.x 100% | 35.7 MiB/s | 730.4 KiB | 00m00s [ 40/153] zlib-ng-compat-0:2.1.7-3.fc42 100% | 6.3 MiB/s | 77.9 KiB | 00m00s [ 41/153] bzip2-libs-0:1.0.8-19.fc41.x8 100% | 3.6 MiB/s | 41.1 KiB | 00m00s [ 42/153] libacl-0:2.3.2-2.fc41.x86_64 100% | 2.2 MiB/s | 24.5 KiB | 00m00s [ 43/153] libcap-0:2.70-4.fc41.x86_64 100% | 9.4 MiB/s | 86.7 KiB | 00m00s [ 44/153] libeconf-0:0.6.2-3.fc41.x86_6 100% | 3.9 MiB/s | 32.2 KiB | 00m00s [ 45/153] libattr-0:2.5.2-4.fc41.x86_64 100% | 2.0 MiB/s | 18.2 KiB | 00m00s [ 46/153] libgcc-0:14.2.1-4.fc42.x86_64 100% | 8.7 MiB/s | 133.3 KiB | 00m00s [ 47/153] libsemanage-0:3.7-3.fc42.x86_ 100% | 16.3 MiB/s | 117.2 KiB | 00m00s [ 48/153] libxcrypt-0:4.4.36-7.fc41.x86 100% | 6.8 MiB/s | 118.5 KiB | 00m00s [ 49/153] setup-0:2.15.0-5.fc41.noarch 100% | 5.8 MiB/s | 148.3 KiB | 00m00s [ 50/153] debugedit-0:5.0-17.fc41.x86_6 100% | 6.5 MiB/s | 80.1 KiB | 00m00s [ 51/153] elfutils-libelf-0:0.191-8.fc4 100% | 14.5 MiB/s | 207.6 KiB | 00m00s [ 52/153] elfutils-0:0.191-8.fc41.x86_6 100% | 20.5 MiB/s | 524.4 KiB | 00m00s [ 53/153] file-0:5.45-7.fc41.x86_64 100% | 4.0 MiB/s | 49.1 KiB | 00m00s [ 54/153] libarchive-0:3.7.6-1.fc42.x86 100% | 44.9 MiB/s | 413.7 KiB | 00m00s [ 55/153] pkgconf-pkg-config-0:2.3.0-1. 100% | 1.1 MiB/s | 10.0 KiB | 00m00s [ 56/153] popt-0:1.19-7.fc41.x86_64 100% | 9.7 MiB/s | 59.3 KiB | 00m00s [ 57/153] rpm-build-libs-0:4.19.94-1.fc 100% | 13.8 MiB/s | 99.1 KiB | 00m00s [ 58/153] rpm-0:4.19.94-1.fc42.x86_64 100% | 33.8 MiB/s | 519.7 KiB | 00m00s [ 59/153] binutils-0:2.43.1-1.fc42.x86_ 100% | 77.4 MiB/s | 6.4 MiB | 00m00s [ 60/153] rpm-libs-0:4.19.94-1.fc42.x86 100% | 13.7 MiB/s | 309.6 KiB | 00m00s [ 61/153] zstd-0:1.5.6-2.fc41.x86_64 100% | 27.7 MiB/s | 481.5 KiB | 00m00s [ 62/153] curl-0:8.10.1-2.fc42.x86_64 100% | 21.6 MiB/s | 221.3 KiB | 00m00s [ 63/153] ansible-srpm-macros-0:1-16.fc 100% | 1.8 MiB/s | 20.8 KiB | 00m00s [ 64/153] build-reproducibility-srpm-ma 100% | 623.7 KiB/s | 10.6 KiB | 00m00s [ 65/153] efi-srpm-macros-0:5-12.fc41.n 100% | 1.8 MiB/s | 22.4 KiB | 00m00s [ 66/153] dwz-0:0.15-7.fc41.x86_64 100% | 6.4 MiB/s | 138.0 KiB | 00m00s [ 67/153] fonts-srpm-macros-1:2.0.5-17. 100% | 2.9 MiB/s | 27.0 KiB | 00m00s [ 68/153] glibc-gconv-extra-0:2.40.9000 100% | 38.5 MiB/s | 1.7 MiB | 00m00s [ 69/153] forge-srpm-macros-0:0.4.0-1.f 100% | 2.1 MiB/s | 19.8 KiB | 00m00s [ 70/153] ghc-srpm-macros-0:1.9.2-1.fc4 100% | 911.7 KiB/s | 9.1 KiB | 00m00s [ 71/153] gnat-srpm-macros-0:6-6.fc41.n 100% | 895.2 KiB/s | 9.0 KiB | 00m00s [ 72/153] fpc-srpm-macros-0:1.3-13.fc41 100% | 497.6 KiB/s | 8.0 KiB | 00m00s [ 73/153] go-srpm-macros-0:3.6.0-3.fc41 100% | 2.7 MiB/s | 28.0 KiB | 00m00s [ 74/153] lua-srpm-macros-0:1-14.fc41.n 100% | 986.5 KiB/s | 8.9 KiB | 00m00s [ 75/153] kernel-srpm-macros-0:1.0-24.f 100% | 759.1 KiB/s | 9.9 KiB | 00m00s [ 76/153] ocaml-srpm-macros-0:10-3.fc41 100% | 2.2 MiB/s | 9.2 KiB | 00m00s [ 77/153] openblas-srpm-macros-0:2-18.f 100% | 1.9 MiB/s | 7.7 KiB | 00m00s [ 78/153] package-notes-srpm-macros-0:0 100% | 1.4 MiB/s | 9.8 KiB | 00m00s [ 79/153] perl-srpm-macros-0:1-56.fc41. 100% | 945.9 KiB/s | 8.5 KiB | 00m00s [ 80/153] pyproject-srpm-macros-0:1.15. 100% | 1.5 MiB/s | 13.5 KiB | 00m00s [ 81/153] python-srpm-macros-0:3.13-3.f 100% | 2.9 MiB/s | 23.7 KiB | 00m00s [ 82/153] qt6-srpm-macros-0:6.7.2-3.fc4 100% | 1.1 MiB/s | 9.1 KiB | 00m00s [ 83/153] rust-srpm-macros-0:26.3-3.fc4 100% | 1.7 MiB/s | 12.1 KiB | 00m00s [ 84/153] qt5-srpm-macros-0:5.15.15-1.f 100% | 741.5 KiB/s | 8.9 KiB | 00m00s [ 85/153] zig-srpm-macros-0:1-3.fc41.no 100% | 1.3 MiB/s | 8.1 KiB | 00m00s [ 86/153] zip-0:3.0-41.fc41.x86_64 100% | 32.3 MiB/s | 264.8 KiB | 00m00s [ 87/153] pkgconf-0:2.3.0-1.fc42.x86_64 100% | 4.9 MiB/s | 45.2 KiB | 00m00s [ 88/153] pkgconf-m4-0:2.3.0-1.fc42.noa 100% | 2.3 MiB/s | 14.3 KiB | 00m00s [ 89/153] libpkgconf-0:2.3.0-1.fc42.x86 100% | 4.7 MiB/s | 38.5 KiB | 00m00s [ 90/153] ed-0:1.20.2-2.fc41.x86_64 100% | 8.9 MiB/s | 81.8 KiB | 00m00s [ 91/153] authselect-0:1.5.0-7.fc41.x86 100% | 13.8 MiB/s | 141.2 KiB | 00m00s [ 92/153] gdbm-libs-1:1.23-7.fc41.x86_6 100% | 11.0 MiB/s | 56.3 KiB | 00m00s [ 93/153] gdbm-1:1.23-7.fc41.x86_64 100% | 16.0 MiB/s | 147.2 KiB | 00m00s [ 94/153] libnsl2-0:2.0.1-2.fc41.x86_64 100% | 4.1 MiB/s | 29.6 KiB | 00m00s [ 95/153] libtirpc-0:1.3.5-0.fc41.x86_6 100% | 15.3 MiB/s | 94.2 KiB | 00m00s [ 96/153] libpwquality-0:1.4.5-11.fc41. 100% | 13.2 MiB/s | 108.2 KiB | 00m00s [ 97/153] crypto-policies-0:20240927-1. 100% | 8.8 MiB/s | 72.5 KiB | 00m00s [ 98/153] openssl-libs-1:3.2.2-8.fc42.x 100% | 100.4 MiB/s | 2.3 MiB | 00m00s [ 99/153] ncurses-base-0:6.5-2.20240629 100% | 3.7 MiB/s | 63.8 KiB | 00m00s [100/153] krb5-libs-0:1.21.3-2.fc41.x86 100% | 43.3 MiB/s | 753.3 KiB | 00m00s [101/153] libcom_err-0:1.47.1-3.fc41.x8 100% | 2.0 MiB/s | 26.4 KiB | 00m00s [102/153] libsepol-0:3.7-3.fc42.x86_64 100% | 37.1 MiB/s | 342.2 KiB | 00m00s [103/153] pcre2-0:10.44-1.fc41.1.x86_64 100% | 23.7 MiB/s | 243.1 KiB | 00m00s [104/153] ca-certificates-0:2024.2.69_v 100% | 17.4 MiB/s | 944.5 KiB | 00m00s [105/153] cracklib-0:2.9.11-6.fc41.x86_ 100% | 13.3 MiB/s | 81.7 KiB | 00m00s [106/153] libxml2-0:2.12.8-2.fc41.x86_6 100% | 55.9 MiB/s | 687.3 KiB | 00m00s [107/153] lz4-libs-0:1.10.0-1.fc41.x86_ 100% | 6.3 MiB/s | 70.7 KiB | 00m00s [108/153] libzstd-0:1.5.6-2.fc41.x86_64 100% | 18.9 MiB/s | 310.3 KiB | 00m00s [109/153] keyutils-libs-0:1.6.3-4.fc41. 100% | 3.4 MiB/s | 31.6 KiB | 00m00s [110/153] libverto-0:0.3.2-9.fc41.x86_6 100% | 2.5 MiB/s | 20.7 KiB | 00m00s [111/153] basesystem-0:11-21.fc41.noarc 100% | 1.8 MiB/s | 7.4 KiB | 00m00s [112/153] glibc-common-0:2.40.9000-1.fc 100% | 35.9 MiB/s | 404.7 KiB | 00m00s [113/153] gmp-1:6.3.0-2.fc41.x86_64 100% | 28.2 MiB/s | 318.0 KiB | 00m00s [114/153] mpfr-0:4.2.1-5.fc41.x86_64 100% | 30.7 MiB/s | 346.3 KiB | 00m00s [115/153] filesystem-0:3.18-29.fc42.x86 100% | 50.9 MiB/s | 1.1 MiB | 00m00s [116/153] fedora-repos-0:42-0.2.noarch 100% | 1.0 MiB/s | 9.2 KiB | 00m00s [117/153] elfutils-debuginfod-client-0: 100% | 3.3 MiB/s | 37.2 KiB | 00m00s [118/153] file-libs-0:5.45-7.fc41.x86_6 100% | 37.2 MiB/s | 762.0 KiB | 00m00s [119/153] elfutils-libs-0:0.191-8.fc41. 100% | 19.3 MiB/s | 257.5 KiB | 00m00s [120/153] libstdc++-0:14.2.1-4.fc42.x86 100% | 51.0 MiB/s | 888.0 KiB | 00m00s [121/153] libffi-0:3.4.6-3.fc42.x86_64 100% | 4.9 MiB/s | 40.0 KiB | 00m00s [122/153] coreutils-common-0:9.5-10.fc4 100% | 104.8 MiB/s | 2.1 MiB | 00m00s [123/153] p11-kit-trust-0:0.25.5-3.fc41 100% | 25.8 MiB/s | 132.1 KiB | 00m00s [124/153] p11-kit-0:0.25.5-3.fc41.x86_6 100% | 33.3 MiB/s | 477.3 KiB | 00m00s [125/153] add-determinism-0:0.3.6-1.fc4 100% | 83.2 MiB/s | 851.8 KiB | 00m00s [126/153] alternatives-0:1.30-1.fc41.x8 100% | 4.6 MiB/s | 42.5 KiB | 00m00s [127/153] lua-libs-0:5.4.6-6.fc41.x86_6 100% | 12.9 MiB/s | 132.0 KiB | 00m00s [128/153] jansson-0:2.13.1-10.fc41.x86_ 100% | 3.1 MiB/s | 44.4 KiB | 00m00s [129/153] rpm-sequoia-0:1.7.0-2.fc41.x8 100% | 62.3 MiB/s | 892.5 KiB | 00m00s [130/153] sqlite-libs-0:3.46.0-4.fc41.x 100% | 63.2 MiB/s | 712.4 KiB | 00m00s [131/153] libgomp-0:14.2.1-4.fc42.x86_6 100% | 34.7 MiB/s | 355.3 KiB | 00m00s [132/153] pcre2-syntax-0:10.44-1.fc41.1 100% | 14.6 MiB/s | 149.9 KiB | 00m00s [133/153] libtasn1-0:4.19.0-9.fc41.x86_ 100% | 14.5 MiB/s | 74.2 KiB | 00m00s [134/153] fedora-gpg-keys-0:42-0.2.noar 100% | 12.0 MiB/s | 123.3 KiB | 00m00s [135/153] elfutils-default-yama-scope-0 100% | 1.3 MiB/s | 12.3 KiB | 00m00s [136/153] fedora-release-0:42-0.3.noarc 100% | 1.3 MiB/s | 12.2 KiB | 00m00s [137/153] fedora-repos-rawhide-0:42-0.2 100% | 380.0 KiB/s | 8.7 KiB | 00m00s [138/153] xxhash-libs-0:0.8.2-3.fc41.x8 100% | 2.4 MiB/s | 37.1 KiB | 00m00s [139/153] fedora-release-identity-basic 100% | 1.2 MiB/s | 13.0 KiB | 00m00s [140/153] gdb-minimal-0:15.1-2.fc42.x86 100% | 116.6 MiB/s | 4.3 MiB | 00m00s [141/153] libbrotli-0:1.1.0-5.fc41.x86_ 100% | 15.1 MiB/s | 340.5 KiB | 00m00s [142/153] libidn2-0:2.3.7-2.fc41.x86_64 100% | 11.0 MiB/s | 112.6 KiB | 00m00s [143/153] libcurl-0:8.10.1-2.fc42.x86_6 100% | 13.4 MiB/s | 371.3 KiB | 00m00s [144/153] libnghttp2-0:1.63.0-1.fc42.x8 100% | 9.4 MiB/s | 76.7 KiB | 00m00s [145/153] libpsl-0:0.21.5-4.fc41.x86_64 100% | 7.0 MiB/s | 64.1 KiB | 00m00s [146/153] libssh-0:0.11.1-1.fc42.x86_64 100% | 28.3 MiB/s | 231.9 KiB | 00m00s [147/153] openldap-0:2.6.8-5.fc41.x86_6 100% | 31.2 MiB/s | 255.6 KiB | 00m00s [148/153] libtool-ltdl-0:2.4.7-12.fc41. 100% | 5.0 MiB/s | 35.6 KiB | 00m00s [149/153] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 59.7 MiB/s | 794.9 KiB | 00m00s [150/153] libevent-0:2.1.12-14.fc41.x86 100% | 14.8 MiB/s | 257.5 KiB | 00m00s [151/153] libssh-config-0:0.11.1-1.fc42 100% | 782.1 KiB/s | 9.4 KiB | 00m00s [152/153] libunistring-0:1.1-8.fc41.x86 100% | 48.4 MiB/s | 544.8 KiB | 00m00s [153/153] publicsuffix-list-dafsa-0:202 100% | 5.2 MiB/s | 58.3 KiB | 00m00s -------------------------------------------------------------------------------- [153/153] Total 100% | 64.0 MiB/s | 52.6 MiB | 00m01s Running transaction [ 1/155] Verify package files 100% | 980.0 B/s | 153.0 B | 00m00s [ 2/155] Prepare transaction 100% | 4.4 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:14.2.1-4. 100% | 269.8 MiB/s | 276.3 KiB | 00m00s [ 4/155] Installing publicsuffix-list- 100% | 0.0 B/s | 68.3 KiB | 00m00s [ 5/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/155] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 7/155] Installing fedora-gpg-keys-0: 100% | 56.1 MiB/s | 172.2 KiB | 00m00s [ 8/155] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/155] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/155] Installing fedora-release-com 100% | 0.0 B/s | 23.7 KiB | 00m00s [ 11/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/155] Installing setup-0:2.15.0-5.f 100% | 70.9 MiB/s | 726.1 KiB | 00m00s [ 13/155] Installing filesystem-0:3.18- 100% | 3.8 MiB/s | 212.6 KiB | 00m00s [ 14/155] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 15/155] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB | 00m00s [ 16/155] Installing coreutils-common-0 100% | 466.3 MiB/s | 11.2 MiB | 00m00s [ 17/155] Installing ncurses-base-0:6.5 100% | 114.5 MiB/s | 351.7 KiB | 00m00s [ 18/155] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 19/155] Installing ncurses-libs-0:6.5 100% | 239.7 MiB/s | 981.8 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [ 20/155] Installing glibc-0:2.40.9000- 100% | 279.4 MiB/s | 6.7 MiB | 00m00s [ 21/155] Installing bash-0:5.2.32-2.fc 100% | 453.8 MiB/s | 8.2 MiB | 00m00s [ 22/155] Installing glibc-common-0:2.4 100% | 209.5 MiB/s | 1.0 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [ 23/155] Installing glibc-gconv-extra- 100% | 273.8 MiB/s | 8.2 MiB | 00m00s [ 24/155] Installing zlib-ng-compat-0:2 100% | 135.5 MiB/s | 138.8 KiB | 00m00s [ 25/155] Installing xz-libs-1:5.6.2-2. 100% | 210.4 MiB/s | 215.5 KiB | 00m00s [ 26/155] Installing bzip2-libs-0:1.0.8 100% | 0.0 B/s | 81.8 KiB | 00m00s [ 27/155] Installing libuuid-0:2.40.2-8 100% | 0.0 B/s | 42.5 KiB | 00m00s [ 28/155] Installing readline-0:8.2-11. 100% | 483.7 MiB/s | 495.3 KiB | 00m00s [ 29/155] Installing popt-0:1.19-7.fc41 100% | 70.1 MiB/s | 143.5 KiB | 00m00s [ 30/155] Installing libblkid-0:2.40.2- 100% | 257.5 MiB/s | 263.6 KiB | 00m00s [ 31/155] Installing libattr-0:2.5.2-4. 100% | 0.0 B/s | 29.5 KiB | 00m00s [ 32/155] Installing libacl-0:2.3.2-2.f 100% | 0.0 B/s | 40.7 KiB | 00m00s [ 33/155] Installing libxcrypt-0:4.4.36 100% | 263.2 MiB/s | 269.5 KiB | 00m00s [ 34/155] Installing libzstd-0:1.5.6-2. 100% | 389.3 MiB/s | 797.2 KiB | 00m00s [ 35/155] Installing elfutils-libelf-0: 100% | 389.7 MiB/s | 1.2 MiB | 00m00s [ 36/155] Installing gmp-1:6.3.0-2.fc41 100% | 397.3 MiB/s | 813.7 KiB | 00m00s [ 37/155] Installing libstdc++-0:14.2.1 100% | 396.4 MiB/s | 2.8 MiB | 00m00s [ 38/155] Installing libeconf-0:0.6.2-3 100% | 0.0 B/s | 59.7 KiB | 00m00s [ 39/155] Installing gdbm-libs-1:1.23-7 100% | 0.0 B/s | 123.6 KiB | 00m00s [ 40/155] Installing mpfr-0:4.2.1-5.fc4 100% | 407.1 MiB/s | 833.7 KiB | 00m00s [ 41/155] Installing gawk-0:5.3.0-4.fc4 100% | 346.4 MiB/s | 1.7 MiB | 00m00s [ 42/155] Installing dwz-0:0.15-7.fc41. 100% | 285.5 MiB/s | 292.3 KiB | 00m00s [ 43/155] Installing unzip-0:6.0-64.fc4 100% | 381.1 MiB/s | 390.3 KiB | 00m00s [ 44/155] Installing file-libs-0:5.45-7 100% | 709.6 MiB/s | 9.9 MiB | 00m00s [ 45/155] Installing file-0:5.45-7.fc41 100% | 20.5 MiB/s | 105.0 KiB | 00m00s [ 46/155] Installing crypto-policies-0: 100% | 39.8 MiB/s | 163.2 KiB | 00m00s [ 47/155] Installing libcap-ng-0:0.8.5- 100% | 0.0 B/s | 71.0 KiB | 00m00s [ 48/155] Installing audit-libs-0:4.0.2 100% | 325.6 MiB/s | 333.4 KiB | 00m00s [ 49/155] Installing pam-libs-0:1.6.1-6 100% | 138.0 MiB/s | 141.3 KiB | 00m00s [ 50/155] Installing libcap-0:2.70-4.fc 100% | 110.0 MiB/s | 225.2 KiB | 00m00s [ 51/155] Installing systemd-libs-0:256 100% | 406.7 MiB/s | 2.0 MiB | 00m00s [ 52/155] Installing libsmartcols-0:2.4 100% | 177.1 MiB/s | 181.4 KiB | 00m00s [ 53/155] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 68.3 KiB | 00m00s [ 54/155] Installing libsepol-0:3.7-3.f 100% | 399.9 MiB/s | 819.0 KiB | 00m00s [ 55/155] Installing pcre2-0:10.44-1.fc 100% | 319.8 MiB/s | 654.9 KiB | 00m00s [ 56/155] Installing libselinux-0:3.7-6 100% | 178.0 MiB/s | 182.3 KiB | 00m00s [ 57/155] Installing sed-0:4.9-3.fc41.x 100% | 283.1 MiB/s | 869.7 KiB | 00m00s [ 58/155] Installing findutils-1:4.10.0 100% | 371.6 MiB/s | 1.9 MiB | 00m00s [ 59/155] Installing grep-0:3.11-9.fc41 100% | 250.8 MiB/s | 1.0 MiB | 00m00s [ 60/155] Installing xz-1:5.6.2-2.fc41. 100% | 301.2 MiB/s | 1.2 MiB | 00m00s [ 61/155] Installing libmount-0:2.40.2- 100% | 348.6 MiB/s | 356.9 KiB | 00m00s [ 62/155] Installing lz4-libs-0:1.10.0- 100% | 0.0 B/s | 146.6 KiB | 00m00s [ 63/155] Installing libffi-0:3.4.6-3.f 100% | 0.0 B/s | 87.8 KiB | 00m00s [ 64/155] Installing alternatives-0:1.3 100% | 0.0 B/s | 67.9 KiB | 00m00s [ 65/155] Installing lua-libs-0:5.4.6-6 100% | 279.5 MiB/s | 286.2 KiB | 00m00s [ 66/155] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.5 KiB | 00m00s [ 67/155] Installing p11-kit-0:0.25.5-3 100% | 315.3 MiB/s | 2.2 MiB | 00m00s [ 68/155] Installing libunistring-0:1.1 100% | 432.7 MiB/s | 1.7 MiB | 00m00s [ 69/155] Installing libidn2-0:2.3.7-2. 100% | 163.6 MiB/s | 335.1 KiB | 00m00s [ 70/155] Installing libpsl-0:0.21.5-4. 100% | 0.0 B/s | 81.7 KiB | 00m00s [ 71/155] Installing p11-kit-trust-0:0. 100% | 54.8 MiB/s | 393.1 KiB | 00m00s [ 72/155] Installing openssl-libs-1:3.2 100% | 434.9 MiB/s | 7.8 MiB | 00m00s [ 73/155] Installing coreutils-0:9.5-10 100% | 318.2 MiB/s | 5.7 MiB | 00m00s [ 74/155] Installing ca-certificates-0: 100% | 2.3 MiB/s | 2.4 MiB | 00m01s [ 75/155] Installing gzip-0:1.13-2.fc41 100% | 192.7 MiB/s | 394.6 KiB | 00m00s [ 76/155] Installing authselect-libs-0: 100% | 203.4 MiB/s | 833.2 KiB | 00m00s [ 77/155] Installing cracklib-0:2.9.11- 100% | 81.5 MiB/s | 250.3 KiB | 00m00s [ 78/155] Installing libpwquality-0:1.4 100% | 140.0 MiB/s | 430.1 KiB | 00m00s [ 79/155] Installing rpm-sequoia-0:1.7. 100% | 394.5 MiB/s | 2.4 MiB | 00m00s [ 80/155] Installing libevent-0:2.1.12- 100% | 292.8 MiB/s | 899.5 KiB | 00m00s [ 81/155] Installing zstd-0:1.5.6-2.fc4 100% | 422.9 MiB/s | 1.7 MiB | 00m00s [ 82/155] Installing util-linux-core-0: 100% | 305.6 MiB/s | 1.5 MiB | 00m00s [ 83/155] Installing tar-2:1.35-4.fc41. 100% | 422.6 MiB/s | 3.0 MiB | 00m00s [ 84/155] Installing libsemanage-0:3.7- 100% | 146.4 MiB/s | 299.8 KiB | 00m00s [ 85/155] Installing shadow-utils-2:4.1 100% | 276.3 MiB/s | 4.1 MiB | 00m00s [ 86/155] Installing zip-0:3.0-41.fc41. 100% | 345.2 MiB/s | 707.1 KiB | 00m00s [ 87/155] Installing gdbm-1:1.23-7.fc41 100% | 227.4 MiB/s | 465.8 KiB | 00m00s [ 88/155] Installing cyrus-sasl-lib-0:2 100% | 384.3 MiB/s | 2.3 MiB | 00m00s [ 89/155] Installing libfdisk-0:2.40.2- 100% | 355.5 MiB/s | 364.0 KiB | 00m00s [ 90/155] Installing bzip2-0:1.0.8-19.f 100% | 97.8 MiB/s | 100.2 KiB | 00m00s [ 91/155] Installing libxml2-0:2.12.8-2 100% | 428.0 MiB/s | 1.7 MiB | 00m00s [ 92/155] Installing libarchive-0:3.7.6 100% | 457.4 MiB/s | 936.7 KiB | 00m00s [ 93/155] Installing add-determinism-0: 100% | 449.2 MiB/s | 2.2 MiB | 00m00s [ 94/155] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 95/155] Installing sqlite-libs-0:3.46 100% | 357.3 MiB/s | 1.4 MiB | 00m00s [ 96/155] Installing rpm-libs-0:4.19.94 100% | 353.3 MiB/s | 723.6 KiB | 00m00s [ 97/155] Installing ed-0:1.20.2-2.fc41 100% | 145.7 MiB/s | 149.2 KiB | 00m00s [ 98/155] Installing patch-0:2.7.6-25.f 100% | 261.9 MiB/s | 268.2 KiB | 00m00s [ 99/155] Installing elfutils-default-y 100% | 408.6 KiB/s | 2.0 KiB | 00m00s [100/155] Installing elfutils-libs-0:0. 100% | 316.4 MiB/s | 648.0 KiB | 00m00s [101/155] Installing cpio-0:2.15-2.fc41 100% | 274.9 MiB/s | 1.1 MiB | 00m00s [102/155] Installing diffutils-0:3.10-8 100% | 318.1 MiB/s | 1.6 MiB | 00m00s [103/155] Installing libpkgconf-0:2.3.0 100% | 0.0 B/s | 79.3 KiB | 00m00s [104/155] Installing pkgconf-0:2.3.0-1. 100% | 89.0 MiB/s | 91.1 KiB | 00m00s [105/155] Installing keyutils-libs-0:1. 100% | 0.0 B/s | 55.8 KiB | 00m00s [106/155] Installing libverto-0:0.3.2-9 100% | 0.0 B/s | 31.3 KiB | 00m00s [107/155] Installing krb5-libs-0:1.21.3 100% | 328.5 MiB/s | 2.3 MiB | 00m00s [108/155] Installing libtirpc-0:1.3.5-0 100% | 199.7 MiB/s | 204.5 KiB | 00m00s [109/155] Installing libnsl2-0:2.0.1-2. 100% | 57.7 MiB/s | 59.1 KiB | 00m00s [110/155] Installing pam-0:1.6.1-6.fc42 100% | 170.7 MiB/s | 1.9 MiB | 00m00s [111/155] Installing libssh-0:0.11.1-1. 100% | 279.2 MiB/s | 571.7 KiB | 00m00s [112/155] Installing jansson-0:2.13.1-1 100% | 87.6 MiB/s | 89.7 KiB | 00m00s [113/155] Installing libgomp-0:14.2.1-4 100% | 512.9 MiB/s | 525.2 KiB | 00m00s [114/155] Installing rpm-build-libs-0:4 100% | 202.6 MiB/s | 207.5 KiB | 00m00s [115/155] Installing xxhash-libs-0:0.8. 100% | 0.0 B/s | 89.9 KiB | 00m00s [116/155] Installing libbrotli-0:1.1.0- 100% | 273.4 MiB/s | 839.9 KiB | 00m00s [117/155] Installing libnghttp2-0:1.63. 100% | 167.2 MiB/s | 171.2 KiB | 00m00s [118/155] Installing libtool-ltdl-0:2.4 100% | 0.0 B/s | 67.3 KiB | 00m00s [119/155] Installing openldap-0:2.6.8-5 100% | 316.4 MiB/s | 648.0 KiB | 00m00s [120/155] Installing libcurl-0:8.10.1-2 100% | 409.9 MiB/s | 839.5 KiB | 00m00s [121/155] Installing elfutils-debuginfo 100% | 65.3 MiB/s | 66.9 KiB | 00m00s [122/155] Installing binutils-0:2.43.1- 100% | 423.6 MiB/s | 27.5 MiB | 00m00s [123/155] Installing elfutils-0:0.191-8 100% | 365.7 MiB/s | 2.6 MiB | 00m00s [124/155] Installing gdb-minimal-0:15.1 100% | 448.1 MiB/s | 13.0 MiB | 00m00s [125/155] Installing debugedit-0:5.0-17 100% | 197.3 MiB/s | 202.0 KiB | 00m00s [126/155] Installing curl-0:8.10.1-2.fc 100% | 55.6 MiB/s | 455.8 KiB | 00m00s [127/155] Installing rpm-0:4.19.94-1.fc 100% | 208.8 MiB/s | 2.5 MiB | 00m00s [128/155] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.2 KiB | 00m00s [129/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [130/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [131/155] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [132/155] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [133/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [134/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [135/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [136/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [137/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [138/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [139/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [140/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [141/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [142/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [143/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [144/155] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.3 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 0.0 B/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 188.7 MiB/s | 193.2 KiB | 00m00s [150/155] Installing rpm-build-0:4.19.9 100% | 198.2 MiB/s | 202.9 KiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 206.4 MiB/s | 3.7 MiB | 00m00s [153/155] Installing authselect-0:1.5.0 100% | 154.2 MiB/s | 157.9 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 80.5 MiB/s | 82.4 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [155/155] Installing info-0:7.1.1-1.fc4 100% | 258.6 KiB/s | 362.3 KiB | 00m01s Warning: skipped PGP checks for 153 packages from repository: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.x86_64 authselect-1.5.0-7.fc41.x86_64 authselect-libs-1.5.0-7.fc41.x86_64 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.x86_64 binutils-2.43.1-1.fc42.x86_64 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.69_v8.0.401-2.fc42.noarch coreutils-9.5-10.fc42.x86_64 coreutils-common-9.5-10.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20240927-1.git93b7251.fc42.noarch curl-8.10.1-2.fc42.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.0-17.fc41.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-7.fc41.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.x86_64 elfutils-debuginfod-client-0.191-8.fc41.x86_64 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.x86_64 elfutils-libs-0.191-8.fc41.x86_64 fedora-gpg-keys-42-0.2.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.2.noarch fedora-repos-rawhide-42-0.2.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-29.fc42.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc42.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.1-2.fc42.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-1.fc42.x86_64 glibc-common-2.40.9000-1.fc42.x86_64 glibc-gconv-extra-2.40.9000-1.fc42.x86_64 glibc-minimal-langpack-2.40.9000-1.fc42.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1.1-1.fc42.x86_64 jansson-2.13.1-10.fc41.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-2.fc41.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.6-1.fc42.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-8.fc42.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.70-4.fc41.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-3.fc41.x86_64 libcurl-8.10.1-2.fc42.x86_64 libeconf-0.6.2-3.fc41.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-8.fc42.x86_64 libffi-3.4.6-3.fc42.x86_64 libgcc-14.2.1-4.fc42.x86_64 libgomp-14.2.1-4.fc42.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-8.fc42.x86_64 libnghttp2-1.63.0-1.fc42.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc42.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-6.fc42.x86_64 libsemanage-3.7-3.fc42.x86_64 libsepol-3.7-3.fc42.x86_64 libsmartcols-2.40.2-8.fc42.x86_64 libssh-0.11.1-1.fc42.x86_64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-4.fc42.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.5-0.fc41.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-7.fc41.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.6-6.fc41.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.x86_64 openssl-libs-3.2.2-8.fc42.x86_64 p11-kit-0.25.5-3.fc41.x86_64 p11-kit-trust-0.25.5-3.fc41.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc42.x86_64 pam-libs-1.6.1-6.fc42.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.15.0-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.x86_64 redhat-rpm-config-296-1.fc42.noarch rpm-4.19.94-1.fc42.x86_64 rpm-build-4.19.94-1.fc42.x86_64 rpm-build-libs-4.19.94-1.fc42.x86_64 rpm-libs-4.19.94-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.16.0-4.fc42.x86_64 sqlite-libs-3.46.0-4.fc41.x86_64 systemd-libs-256.5-1.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-8.fc42.x86_64 util-linux-core-2.40.2-8.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-3.fc41.x86_64 xz-5.6.2-2.fc41.x86_64 xz-libs-5.6.2-2.fc41.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.1.7-3.fc42.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1726444800 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-7.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-x86_64-1727769680.503902/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1727769680.503902/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-ystiequg/ProDy/ProDy.spec) Config(child) 0 minutes 20 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-7.fc42.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1727769680.503902/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1727769680.503902/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1727769680.503902/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.94-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.6.2-1.fc42.x86_64 dnf5-plugins-5.2.6.2-1.fc42.x86_64 Finish: chroot init Start: build phase for ProDy-2.4.1-7.fc42.src.rpm Start: build setup for ProDy-2.4.1-7.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1726444800 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-7.fc42.src.rpm Updating and loading repositories: fedora 100% | 11.7 KiB/s | 19.7 KiB | 00m02s Additional repo http_kojipkgs_fedorapr 100% | 136.8 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 16.5 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: gcc x86_64 14.2.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 104.4 MiB gcc-c++ x86_64 14.2.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38.2 MiB python3-biopython x86_64 1.84-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30.0 MiB python3-devel x86_64 3.13.0~rc2-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB python3-matplotlib x86_64 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21.1 MiB python3-nose noarch 1.3.7-59.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB python3-numpy x86_64 1:1.26.4-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43.8 MiB python3-scipy x86_64 1.11.3-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 62.5 MiB python3-setuptools noarch 69.2.0-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 MiB python3-urllib3 noarch 2.2.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.7 KiB annobin-docs noarch 12.70-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 97.7 KiB annobin-plugin-gcc x86_64 12.70-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 985.6 KiB cairo x86_64 1.18.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB cpp x86_64 14.2.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.0 MiB default-fonts-core-sans noarch 4.1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.9 KiB dejavu-sans-fonts noarch 2.37-24.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.5 MiB expat x86_64 2.6.3-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 291.5 KiB flex x86_64 2.6.4-18.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 805.4 KiB flexiblas x86_64 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 48.5 KiB flexiblas-netlib x86_64 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.7 MiB flexiblas-openblas-openmp x86_64 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43.3 KiB fontconfig x86_64 2.15.0-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 791.9 KiB fonts-filesystem noarch 1:2.0.5-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B freetype x86_64 2.13.2-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 850.6 KiB fribidi x86_64 1.0.16-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 194.5 KiB gcc-plugin-annobin x86_64 14.2.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 61.1 KiB glib2 x86_64 2.82.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.7 MiB glibc-devel x86_64 2.40.9000-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.8 KiB glibc-headers-x86 noarch 2.40.9000-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB gnutls x86_64 3.8.7-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.2 MiB google-noto-fonts-common noarch 20240901-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17.5 KiB google-noto-sans-vf-fonts noarch 20240901-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB graphite2 x86_64 1.3.14-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.0 KiB harfbuzz x86_64 10.0.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.7 MiB jbigkit-libs x86_64 2.1-30.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 117.6 KiB kernel-headers x86_64 6.11.0-63.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.4 MiB lcms2 x86_64 2.16-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 424.9 KiB libX11 x86_64 1.8.10-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB libX11-common noarch 1.8.10-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB libXau x86_64 1.0.11-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 66.9 KiB libXext x86_64 1.3.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 90.1 KiB libXft x86_64 2.3.8-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 164.5 KiB libXrender x86_64 0.9.11-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 50.1 KiB libb2 x86_64 0.98.1-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 42.2 KiB libgfortran x86_64 14.2.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB libimagequant x86_64 4.0.3-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 666.7 KiB libjpeg-turbo x86_64 3.0.4-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 789.1 KiB liblerc x86_64 4.0.0-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 607.5 KiB libmpc x86_64 1.3.1-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 164.7 KiB libpng x86_64 2:1.6.44-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 245.8 KiB libqhull_r x86_64 1:8.0.2-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 483.4 KiB libquadmath x86_64 14.2.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 325.9 KiB libraqm x86_64 0.10.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 32.7 KiB libstdc++-devel x86_64 14.2.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 15.4 MiB libtiff x86_64 4.6.0-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 606.0 KiB libwebp x86_64 1.4.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 822.6 KiB libxcb x86_64 1.17.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB libxcrypt-devel x86_64 4.4.36-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30.3 KiB libxslt x86_64 1.1.42-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 483.1 KiB m4 x86_64 1.4.19-10.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 592.9 KiB make x86_64 1:4.4.1-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB mpdecimal x86_64 2.5.1-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 204.9 KiB nettle x86_64 3.10-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 793.0 KiB openblas x86_64 0.3.26-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 96.0 KiB openblas-openmp x86_64 0.3.26-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.4 MiB openjpeg x86_64 2.5.2-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 445.7 KiB pixman x86_64 0.43.4-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 718.1 KiB pyproject-rpm-macros noarch 1.15.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 109.0 KiB python-pip-wheel noarch 24.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB python-rpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22.1 KiB python3 x86_64 3.13.0~rc2-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 31.8 KiB python3-appdirs noarch 1.4.4-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 68.7 KiB python3-brotli x86_64 1.1.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 836.0 KiB python3-cairo x86_64 1.25.1-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492.5 KiB python3-charset-normalizer noarch 3.3.2-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 314.8 KiB python3-contourpy x86_64 1.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 808.6 KiB python3-cycler noarch 0.11.0-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.6 KiB python3-dateutil noarch 1:2.8.2-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 879.2 KiB python3-fonttools x86_64 4.54.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 18.3 MiB python3-fs noarch 2.4.16-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB python3-idna noarch 3.9-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 639.8 KiB python3-kiwisolver x86_64 1.4.7-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 153.9 KiB python3-libs x86_64 3.13.0~rc2-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.3 MiB python3-lxml x86_64 5.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 MiB python3-matplotlib-data noarch 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 741.5 KiB python3-matplotlib-data-fonts noarch 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.9 MiB python3-matplotlib-tk x86_64 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262.7 KiB python3-numpy-f2py x86_64 1:1.26.4-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.8 MiB python3-olefile noarch 0.47-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 340.4 KiB python3-packaging noarch 24.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 422.3 KiB python3-pillow x86_64 10.4.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.7 MiB python3-pillow-tk x86_64 10.4.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 68.4 KiB python3-platformdirs noarch 4.2.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 168.6 KiB python3-pooch noarch 1.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 625.5 KiB python3-pyparsing noarch 3.1.2-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB python3-requests noarch 2.32.3-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 485.9 KiB python3-rpm-generators noarch 14-11.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.4 KiB python3-six noarch 1.16.0-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 118.3 KiB python3-tkinter x86_64 3.13.0~rc2-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB tcl x86_64 1:8.6.14-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.2 MiB tk x86_64 1:8.6.14-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.6 MiB tzdata noarch 2024a-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB xml-common noarch 0.6.3-65.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB Transaction Summary: Installing: 105 packages Total size of inbound packages is 159 MiB. Need to download 159 MiB. After this operation, 572 MiB extra will be used (install 572 MiB, remove 0 B). [ 1/105] gcc-c++-0:14.2.1-4.fc42.x86_6 100% | 121.1 MiB/s | 14.2 MiB | 00m00s [ 2/105] python3-devel-0:3.13.0~rc2-3. 100% | 29.1 MiB/s | 357.3 KiB | 00m00s [ 3/105] python3-matplotlib-0:3.9.1-2. 100% | 115.5 MiB/s | 4.5 MiB | 00m00s [ 4/105] python3-nose-0:1.3.7-59.fc41. 100% | 32.0 MiB/s | 327.2 KiB | 00m00s [ 5/105] python3-numpy-1:1.26.4-8.fc41 100% | 125.2 MiB/s | 7.4 MiB | 00m00s [ 6/105] gcc-0:14.2.1-4.fc42.x86_64 100% | 131.8 MiB/s | 36.9 MiB | 00m00s [ 7/105] python3-setuptools-0:69.2.0-8 100% | 76.3 MiB/s | 1.4 MiB | 00m00s [ 8/105] python3-urllib3-0:2.2.3-3.fc4 100% | 42.2 MiB/s | 259.0 KiB | 00m00s [ 9/105] python3-0:3.13.0~rc2-3.fc42.x 100% | 5.4 MiB/s | 27.7 KiB | 00m00s [ 10/105] python3-idna-0:3.9-1.fc42.noa 100% | 12.2 MiB/s | 112.5 KiB | 00m00s [ 11/105] flexiblas-netlib-0:3.4.4-3.fc 100% | 107.3 MiB/s | 3.2 MiB | 00m00s [ 12/105] libgfortran-0:14.2.1-4.fc42.x 100% | 65.4 MiB/s | 937.9 KiB | 00m00s [ 13/105] python3-scipy-0:1.11.3-15.fc4 100% | 114.1 MiB/s | 15.9 MiB | 00m00s [ 14/105] python3-pooch-0:1.8.2-3.fc41. 100% | 17.6 MiB/s | 126.4 KiB | 00m00s [ 15/105] python3-numpy-f2py-1:1.26.4-8 100% | 22.2 MiB/s | 501.2 KiB | 00m00s [ 16/105] python3-platformdirs-0:4.2.2- 100% | 6.7 MiB/s | 41.0 KiB | 00m00s [ 17/105] python3-packaging-0:24.1-2.fc 100% | 14.2 MiB/s | 116.2 KiB | 00m00s [ 18/105] python3-requests-0:2.32.3-3.f 100% | 29.1 MiB/s | 149.0 KiB | 00m00s [ 19/105] dejavu-sans-fonts-0:2.37-24.f 100% | 120.5 MiB/s | 1.3 MiB | 00m00s [ 20/105] freetype-0:2.13.2-6.fc41.x86_ 100% | 40.1 MiB/s | 410.7 KiB | 00m00s [ 21/105] libqhull_r-1:8.0.2-5.fc41.x86 100% | 19.7 MiB/s | 201.8 KiB | 00m00s [ 22/105] python3-cairo-0:1.25.1-5.fc41 100% | 12.2 MiB/s | 124.6 KiB | 00m00s [ 23/105] python3-contourpy-0:1.3.0-1.f 100% | 28.7 MiB/s | 264.2 KiB | 00m00s [ 24/105] python3-cycler-0:0.11.0-13.fc 100% | 4.2 MiB/s | 21.3 KiB | 00m00s [ 25/105] python3-dateutil-1:2.8.2-16.f 100% | 48.7 MiB/s | 349.0 KiB | 00m00s [ 26/105] python3-biopython-0:1.84-3.fc 100% | 25.6 MiB/s | 11.6 MiB | 00m00s [ 27/105] python3-kiwisolver-0:1.4.7-1. 100% | 4.3 MiB/s | 66.7 KiB | 00m00s [ 28/105] python3-fonttools-0:4.54.1-1. 100% | 92.7 MiB/s | 2.9 MiB | 00m00s [ 29/105] python3-matplotlib-tk-0:3.9.1 100% | 9.1 MiB/s | 111.6 KiB | 00m00s [ 30/105] python3-matplotlib-data-0:3.9 100% | 35.5 MiB/s | 508.9 KiB | 00m00s [ 31/105] python3-pillow-0:10.4.0-2.fc4 100% | 65.5 MiB/s | 939.4 KiB | 00m00s [ 32/105] python3-pyparsing-0:3.1.2-7.f 100% | 20.3 MiB/s | 270.3 KiB | 00m00s [ 33/105] python3-brotli-0:1.1.0-5.fc41 100% | 27.8 MiB/s | 341.1 KiB | 00m00s [ 34/105] python3-fs-0:2.4.16-9.fc41.no 100% | 22.8 MiB/s | 280.1 KiB | 00m00s [ 35/105] python3-lxml-0:5.3.0-1.fc42.x 100% | 70.8 MiB/s | 1.3 MiB | 00m00s [ 36/105] python3-six-0:1.16.0-23.fc41. 100% | 5.0 MiB/s | 41.2 KiB | 00m00s [ 37/105] tzdata-0:2024a-9.fc41.noarch 100% | 42.0 MiB/s | 430.6 KiB | 00m00s [ 38/105] cairo-0:1.18.0-4.fc41.x86_64 100% | 36.5 MiB/s | 709.9 KiB | 00m00s [ 39/105] flex-0:2.6.4-18.fc41.x86_64 100% | 19.0 MiB/s | 292.5 KiB | 00m00s [ 40/105] libmpc-0:1.3.1-6.fc41.x86_64 100% | 7.7 MiB/s | 71.1 KiB | 00m00s [ 41/105] python3-libs-0:3.13.0~rc2-3.f 100% | 117.2 MiB/s | 8.8 MiB | 00m00s [ 42/105] glibc-devel-0:2.40.9000-1.fc4 100% | 14.3 MiB/s | 131.6 KiB | 00m00s [ 43/105] libstdc++-devel-0:14.2.1-4.fc 100% | 45.9 MiB/s | 2.6 MiB | 00m00s [ 44/105] make-1:4.4.1-8.fc41.x86_64 100% | 33.3 MiB/s | 579.1 KiB | 00m00s [ 45/105] libpng-2:1.6.44-1.fc42.x86_64 100% | 14.7 MiB/s | 120.7 KiB | 00m00s [ 46/105] flexiblas-0:3.4.4-3.fc41.x86_ 100% | 3.5 MiB/s | 25.3 KiB | 00m00s [ 47/105] harfbuzz-0:10.0.1-1.fc42.x86_ 100% | 51.5 MiB/s | 1.0 MiB | 00m00s [ 48/105] flexiblas-openblas-openmp-0:3 100% | 2.8 MiB/s | 17.2 KiB | 00m00s [ 49/105] cpp-0:14.2.1-4.fc42.x86_64 100% | 129.8 MiB/s | 11.9 MiB | 00m00s [ 50/105] libquadmath-0:14.2.1-4.fc42.x 100% | 10.4 MiB/s | 202.6 KiB | 00m00s [ 51/105] m4-0:1.4.19-10.fc41.x86_64 100% | 18.2 MiB/s | 298.8 KiB | 00m00s [ 52/105] fonts-filesystem-1:2.0.5-17.f 100% | 1.2 MiB/s | 8.5 KiB | 00m00s [ 53/105] fontconfig-0:2.15.0-8.fc41.x8 100% | 31.4 MiB/s | 257.0 KiB | 00m00s [ 54/105] libX11-0:1.8.10-2.fc42.x86_64 100% | 57.7 MiB/s | 649.7 KiB | 00m00s [ 55/105] libXext-0:1.3.6-2.fc41.x86_64 100% | 7.6 MiB/s | 39.1 KiB | 00m00s [ 56/105] libXrender-0:0.9.11-7.fc41.x8 100% | 4.5 MiB/s | 27.5 KiB | 00m00s [ 57/105] python3-charset-normalizer-0: 100% | 24.2 MiB/s | 99.3 KiB | 00m00s [ 58/105] libxcb-0:1.17.0-2.fc41.x86_64 100% | 25.4 MiB/s | 234.2 KiB | 00m00s [ 59/105] pixman-0:0.43.4-2.fc41.x86_64 100% | 22.1 MiB/s | 294.1 KiB | 00m00s [ 60/105] lcms2-0:2.16-4.fc41.x86_64 100% | 19.6 MiB/s | 180.3 KiB | 00m00s [ 61/105] libimagequant-0:4.0.3-5.fc41. 100% | 32.7 MiB/s | 301.2 KiB | 00m00s [ 62/105] libjpeg-turbo-0:3.0.4-1.fc42. 100% | 24.8 MiB/s | 228.9 KiB | 00m00s [ 63/105] libraqm-0:0.10.1-1.fc42.x86_6 100% | 3.1 MiB/s | 22.4 KiB | 00m00s [ 64/105] libtiff-0:4.6.0-6.fc42.x86_64 100% | 23.0 MiB/s | 212.0 KiB | 00m00s [ 65/105] libwebp-0:1.4.0-4.fc41.x86_64 100% | 28.5 MiB/s | 292.0 KiB | 00m00s [ 66/105] python3-olefile-0:0.47-5.fc41 100% | 12.1 MiB/s | 74.6 KiB | 00m00s [ 67/105] openjpeg-0:2.5.2-4.fc42.x86_6 100% | 15.2 MiB/s | 186.6 KiB | 00m00s [ 68/105] python3-tkinter-0:3.13.0~rc2- 100% | 34.8 MiB/s | 356.0 KiB | 00m00s [ 69/105] python3-pillow-tk-0:10.4.0-2. 100% | 2.3 MiB/s | 30.3 KiB | 00m00s [ 70/105] python3-matplotlib-data-fonts 100% | 145.3 MiB/s | 2.3 MiB | 00m00s [ 71/105] expat-0:2.6.3-1.fc42.x86_64 100% | 13.9 MiB/s | 114.1 KiB | 00m00s [ 72/105] libxslt-0:1.1.42-2.fc41.x86_6 100% | 18.5 MiB/s | 189.1 KiB | 00m00s [ 73/105] libb2-0:0.98.1-12.fc41.x86_64 100% | 5.0 MiB/s | 25.7 KiB | 00m00s [ 74/105] mpdecimal-0:2.5.1-16.fc41.x86 100% | 14.5 MiB/s | 89.0 KiB | 00m00s [ 75/105] python3-appdirs-0:1.4.4-24.fc 100% | 3.8 MiB/s | 23.4 KiB | 00m00s [ 76/105] libXau-0:1.0.11-7.fc41.x86_64 100% | 5.2 MiB/s | 31.9 KiB | 00m00s [ 77/105] jbigkit-libs-0:2.1-30.fc41.x8 100% | 7.4 MiB/s | 53.3 KiB | 00m00s [ 78/105] python-pip-wheel-0:24.2-2.fc4 100% | 66.8 MiB/s | 1.2 MiB | 00m00s [ 79/105] fribidi-0:1.0.16-1.fc42.x86_6 100% | 7.5 MiB/s | 53.7 KiB | 00m00s [ 80/105] liblerc-0:4.0.0-7.fc41.x86_64 100% | 20.5 MiB/s | 210.3 KiB | 00m00s [ 81/105] libX11-common-0:1.8.10-2.fc42 100% | 23.6 MiB/s | 144.8 KiB | 00m00s [ 82/105] glibc-headers-x86-0:2.40.9000 100% | 77.1 MiB/s | 552.4 KiB | 00m00s [ 83/105] graphite2-0:1.3.14-16.fc41.x8 100% | 9.3 MiB/s | 95.1 KiB | 00m00s [ 84/105] libxcrypt-devel-0:4.4.36-7.fc 100% | 5.6 MiB/s | 28.9 KiB | 00m00s [ 85/105] kernel-headers-0:6.11.0-63.fc 100% | 81.7 MiB/s | 1.5 MiB | 00m00s [ 86/105] gnutls-0:3.8.7-4.fc42.x86_64 100% | 85.5 MiB/s | 1.1 MiB | 00m00s [ 87/105] default-fonts-core-sans-0:4.1 100% | 4.9 MiB/s | 24.9 KiB | 00m00s [ 88/105] xml-common-0:0.6.3-65.fc41.no 100% | 6.1 MiB/s | 31.2 KiB | 00m00s [ 89/105] glib2-0:2.82.1-2.fc42.x86_64 100% | 77.5 MiB/s | 3.0 MiB | 00m00s [ 90/105] abattis-cantarell-vf-fonts-0: 100% | 13.0 MiB/s | 120.2 KiB | 00m00s [ 91/105] google-noto-sans-vf-fonts-0:2 100% | 82.8 MiB/s | 593.9 KiB | 00m00s [ 92/105] tk-1:8.6.14-2.fc41.x86_64 100% | 65.6 MiB/s | 1.6 MiB | 00m00s [ 93/105] tcl-1:8.6.14-2.fc41.x86_64 100% | 32.3 MiB/s | 1.1 MiB | 00m00s [ 94/105] openblas-0:0.3.26-5.fc41.x86_ 100% | 3.4 MiB/s | 38.7 KiB | 00m00s [ 95/105] google-noto-fonts-common-0:20 100% | 1.3 MiB/s | 17.8 KiB | 00m00s [ 96/105] nettle-0:3.10-3.fc41.x86_64 100% | 41.8 MiB/s | 428.5 KiB | 00m00s [ 97/105] openblas-openmp-0:0.3.26-5.fc 100% | 80.4 MiB/s | 5.1 MiB | 00m00s [ 98/105] pyproject-rpm-macros-0:1.15.0 100% | 4.7 MiB/s | 43.4 KiB | 00m00s [ 99/105] libXft-0:2.3.8-7.fc41.x86_64 100% | 6.4 MiB/s | 72.3 KiB | 00m00s [100/105] python-rpm-macros-0:3.13-3.fc 100% | 2.5 MiB/s | 17.7 KiB | 00m00s [101/105] python3-rpm-macros-0:3.13-3.f 100% | 1.5 MiB/s | 12.4 KiB | 00m00s [102/105] python3-rpm-generators-0:14-1 100% | 3.2 MiB/s | 29.3 KiB | 00m00s [103/105] annobin-plugin-gcc-0:12.70-1. 100% | 86.3 MiB/s | 971.7 KiB | 00m00s [104/105] annobin-docs-0:12.70-1.fc42.n 100% | 9.0 MiB/s | 92.0 KiB | 00m00s [105/105] gcc-plugin-annobin-0:14.2.1-4 100% | 4.9 MiB/s | 55.2 KiB | 00m00s -------------------------------------------------------------------------------- [105/105] Total 100% | 189.1 MiB/s | 158.8 MiB | 00m01s Running transaction [ 1/107] Verify package files 100% | 245.0 B/s | 105.0 B | 00m00s [ 2/107] Prepare transaction 100% | 1.4 KiB/s | 105.0 B | 00m00s [ 3/107] Installing fonts-filesystem-1 100% | 0.0 B/s | 788.0 B | 00m00s [ 4/107] Installing python-rpm-macros- 100% | 0.0 B/s | 22.8 KiB | 00m00s [ 5/107] Installing libmpc-0:1.3.1-6.f 100% | 162.3 MiB/s | 166.2 KiB | 00m00s [ 6/107] Installing libgfortran-0:14.2 100% | 508.1 MiB/s | 3.0 MiB | 00m00s [ 7/107] Installing python3-rpm-macros 100% | 0.0 B/s | 6.7 KiB | 00m00s [ 8/107] Installing python3-matplotlib 100% | 416.4 MiB/s | 7.9 MiB | 00m00s [ 9/107] Installing python3-matplotlib 100% | 247.0 MiB/s | 758.7 KiB | 00m00s [ 10/107] Installing tcl-1:8.6.14-2.fc4 100% | 384.2 MiB/s | 4.2 MiB | 00m00s [ 11/107] Installing libwebp-0:1.4.0-4. 100% | 403.7 MiB/s | 826.8 KiB | 00m00s [ 12/107] Installing libjpeg-turbo-0:3. 100% | 386.1 MiB/s | 790.8 KiB | 00m00s [ 13/107] Installing libpng-2:1.6.44-1. 100% | 80.4 MiB/s | 247.0 KiB | 00m00s [ 14/107] Installing tzdata-0:2024a-9.f 100% | 80.9 MiB/s | 1.9 MiB | 00m00s [ 15/107] Installing pyproject-rpm-macr 100% | 108.4 MiB/s | 111.0 KiB | 00m00s [ 16/107] Installing cpp-0:14.2.1-4.fc4 100% | 437.5 MiB/s | 35.0 MiB | 00m00s [ 17/107] Installing dejavu-sans-fonts- 100% | 500.8 MiB/s | 5.5 MiB | 00m00s [ 18/107] Installing abattis-cantarell- 100% | 189.9 MiB/s | 194.4 KiB | 00m00s [ 19/107] Installing annobin-docs-0:12. 100% | 0.0 B/s | 98.8 KiB | 00m00s [ 20/107] Installing nettle-0:3.10-3.fc 100% | 388.7 MiB/s | 796.1 KiB | 00m00s [ 21/107] Installing gnutls-0:3.8.7-4.f 100% | 405.2 MiB/s | 3.2 MiB | 00m00s [ 22/107] Installing glib2-0:2.82.1-2.f 100% | 459.1 MiB/s | 14.7 MiB | 00m00s [ 23/107] Installing google-noto-fonts- 100% | 0.0 B/s | 18.3 KiB | 00m00s [ 24/107] Installing google-noto-sans-v 100% | 416.3 MiB/s | 1.2 MiB | 00m00s [ 25/107] Installing default-fonts-core 100% | 17.8 MiB/s | 18.2 KiB | 00m00s [ 26/107] Installing openblas-0:0.3.26- 100% | 0.0 B/s | 97.8 KiB | 00m00s [ 27/107] Installing openblas-openmp-0: 100% | 635.0 MiB/s | 39.4 MiB | 00m00s [ 28/107] Installing xml-common-0:0.6.3 100% | 39.6 MiB/s | 81.1 KiB | 00m00s [ 29/107] Installing kernel-headers-0:6 100% | 251.7 MiB/s | 6.5 MiB | 00m00s [ 30/107] Installing glibc-headers-x86- 100% | 228.6 MiB/s | 2.3 MiB | 00m00s [ 31/107] Installing libxcrypt-devel-0: 100% | 31.8 MiB/s | 32.6 KiB | 00m00s [ 32/107] Installing glibc-devel-0:2.40 100% | 40.5 MiB/s | 41.5 KiB | 00m00s [ 33/107] Installing graphite2-0:1.3.14 100% | 189.6 MiB/s | 194.1 KiB | 00m00s [ 34/107] Installing harfbuzz-0:10.0.1- 100% | 385.2 MiB/s | 2.7 MiB | 00m00s [ 35/107] Installing freetype-0:2.13.2- 100% | 277.4 MiB/s | 852.3 KiB | 00m00s [ 36/107] Installing fontconfig-0:2.15. 100% | 793.7 KiB/s | 811.1 KiB | 00m01s [ 37/107] Installing libX11-common-0:1. 100% | 169.6 MiB/s | 1.2 MiB | 00m00s [ 38/107] Installing fribidi-0:1.0.16-1 100% | 192.4 MiB/s | 197.0 KiB | 00m00s [ 39/107] Installing libraqm-0:0.10.1-1 100% | 0.0 B/s | 33.8 KiB | 00m00s [ 40/107] Installing liblerc-0:4.0.0-7. 100% | 297.4 MiB/s | 609.0 KiB | 00m00s [ 41/107] Installing jbigkit-libs-0:2.1 100% | 116.8 MiB/s | 119.6 KiB | 00m00s [ 42/107] Installing libtiff-0:4.6.0-6. 100% | 297.0 MiB/s | 608.2 KiB | 00m00s [ 43/107] Installing libXau-0:1.0.11-7. 100% | 0.0 B/s | 68.4 KiB | 00m00s [ 44/107] Installing libxcb-0:1.17.0-2. 100% | 279.1 MiB/s | 1.1 MiB | 00m00s [ 45/107] Installing libX11-0:1.8.10-2. 100% | 428.5 MiB/s | 1.3 MiB | 00m00s [ 46/107] Installing libXrender-0:0.9.1 100% | 0.0 B/s | 51.4 KiB | 00m00s [ 47/107] Installing libXft-0:2.3.8-7.f 100% | 40.5 MiB/s | 166.0 KiB | 00m00s [ 48/107] Installing tk-1:8.6.14-2.fc41 100% | 305.0 MiB/s | 3.7 MiB | 00m00s [ 49/107] Installing libXext-0:1.3.6-2. 100% | 0.0 B/s | 91.3 KiB | 00m00s [ 50/107] Installing python-pip-wheel-0 100% | 620.8 MiB/s | 1.2 MiB | 00m00s [ 51/107] Installing mpdecimal-0:2.5.1- 100% | 201.2 MiB/s | 206.0 KiB | 00m00s [ 52/107] Installing libb2-0:0.98.1-12. 100% | 0.0 B/s | 43.3 KiB | 00m00s [ 53/107] Installing expat-0:2.6.3-1.fc 100% | 71.7 MiB/s | 293.6 KiB | 00m00s [ 54/107] Installing python3-libs-0:3.1 100% | 391.5 MiB/s | 40.7 MiB | 00m00s [ 55/107] Installing python3-0:3.13.0~r 100% | 0.0 B/s | 33.6 KiB | 00m00s [ 56/107] Installing python3-packaging- 100% | 141.0 MiB/s | 433.2 KiB | 00m00s [ 57/107] Installing python3-setuptools 100% | 318.7 MiB/s | 7.3 MiB | 00m00s [ 58/107] Installing python3-idna-0:3.9 100% | 315.5 MiB/s | 646.1 KiB | 00m00s [ 59/107] Installing python3-six-0:1.16 100% | 117.9 MiB/s | 120.7 KiB | 00m00s [ 60/107] Installing python3-tkinter-0: 100% | 395.7 MiB/s | 2.0 MiB | 00m00s [ 61/107] Installing python3-dateutil-1 100% | 290.7 MiB/s | 892.9 KiB | 00m00s [ 62/107] Installing python3-urllib3-0: 100% | 250.4 MiB/s | 1.0 MiB | 00m00s [ 63/107] Installing python3-rpm-genera 100% | 81.0 MiB/s | 82.9 KiB | 00m00s [ 64/107] Installing python3-devel-0:3. 100% | 259.2 MiB/s | 1.8 MiB | 00m00s [ 65/107] Installing python3-platformdi 100% | 170.9 MiB/s | 175.0 KiB | 00m00s [ 66/107] Installing python3-cycler-0:0 100% | 0.0 B/s | 39.8 KiB | 00m00s [ 67/107] Installing python3-kiwisolver 100% | 154.1 MiB/s | 157.8 KiB | 00m00s [ 68/107] Installing python3-pyparsing- 100% | 329.6 MiB/s | 1.0 MiB | 00m00s [ 69/107] Installing python3-brotli-0:1 100% | 272.9 MiB/s | 838.5 KiB | 00m00s [ 70/107] Installing python3-charset-no 100% | 158.5 MiB/s | 324.7 KiB | 00m00s [ 71/107] Installing python3-requests-0 100% | 243.2 MiB/s | 498.0 KiB | 00m00s [ 72/107] Installing python3-pooch-0:1. 100% | 312.7 MiB/s | 640.5 KiB | 00m00s [ 73/107] Installing python3-olefile-0: 100% | 335.6 MiB/s | 343.6 KiB | 00m00s [ 74/107] Installing python3-appdirs-0: 100% | 0.0 B/s | 70.9 KiB | 00m00s [ 75/107] Installing python3-fs-0:2.4.1 100% | 268.3 MiB/s | 1.3 MiB | 00m00s [ 76/107] Installing libxslt-0:1.1.42-2 100% | 237.4 MiB/s | 486.2 KiB | 00m00s [ 77/107] Installing python3-lxml-0:5.3 100% | 382.0 MiB/s | 5.0 MiB | 00m00s [ 78/107] Installing openjpeg-0:2.5.2-4 100% | 437.1 MiB/s | 447.6 KiB | 00m00s [ 79/107] Installing libimagequant-0:4. 100% | 326.3 MiB/s | 668.3 KiB | 00m00s [ 80/107] Installing lcms2-0:2.16-4.fc4 100% | 208.3 MiB/s | 426.5 KiB | 00m00s [ 81/107] Installing python3-pillow-0:1 100% | 339.8 MiB/s | 3.7 MiB | 00m00s [ 82/107] Installing python3-pillow-tk- 100% | 0.0 B/s | 70.1 KiB | 00m00s [ 83/107] Installing pixman-0:0.43.4-2. 100% | 351.2 MiB/s | 719.2 KiB | 00m00s [ 84/107] Installing cairo-0:1.18.0-4.f 100% | 435.9 MiB/s | 1.7 MiB | 00m00s [ 85/107] Installing python3-cairo-0:1. 100% | 242.5 MiB/s | 496.6 KiB | 00m00s [ 86/107] Installing m4-0:1.4.19-10.fc4 100% | 195.1 MiB/s | 599.2 KiB | 00m00s [ 87/107] Installing flex-0:2.6.4-18.fc 100% | 264.1 MiB/s | 811.4 KiB | 00m00s [ 88/107] Installing libquadmath-0:14.2 100% | 319.5 MiB/s | 327.2 KiB | 00m00s [ 89/107] Installing flexiblas-0:3.4.4- 100% | 0.0 B/s | 49.7 KiB | 00m00s [ 90/107] Installing flexiblas-openblas 100% | 0.0 B/s | 44.1 KiB | 00m00s [ 91/107] Installing flexiblas-netlib-0 100% | 410.2 MiB/s | 10.7 MiB | 00m00s [ 92/107] Installing python3-numpy-1:1. 100% | 464.6 MiB/s | 44.1 MiB | 00m00s [ 93/107] Installing python3-numpy-f2py 100% | 218.1 MiB/s | 2.8 MiB | 00m00s [ 94/107] Installing python3-scipy-0:1. 100% | 436.7 MiB/s | 62.9 MiB | 00m00s [ 95/107] Installing python3-fonttools- 100% | 419.9 MiB/s | 18.5 MiB | 00m00s [ 96/107] Installing python3-contourpy- 100% | 267.3 MiB/s | 821.2 KiB | 00m00s [ 97/107] Installing make-1:4.4.1-8.fc4 100% | 300.0 MiB/s | 1.8 MiB | 00m00s [ 98/107] Installing gcc-0:14.2.1-4.fc4 100% | 474.5 MiB/s | 104.4 MiB | 00m00s [ 99/107] Installing libstdc++-devel-0: 100% | 432.1 MiB/s | 15.6 MiB | 00m00s [100/107] Installing libqhull_r-1:8.0.2 100% | 472.9 MiB/s | 484.2 KiB | 00m00s [101/107] Installing python3-matplotlib 100% | 129.5 MiB/s | 265.3 KiB | 00m00s [102/107] Installing python3-matplotlib 100% | 402.5 MiB/s | 21.3 MiB | 00m00s [103/107] Installing gcc-c++-0:14.2.1-4 100% | 438.7 MiB/s | 38.2 MiB | 00m00s [104/107] Installing annobin-plugin-gcc 100% | 80.3 MiB/s | 987.3 KiB | 00m00s [105/107] Installing gcc-plugin-annobin 100% | 4.7 MiB/s | 62.6 KiB | 00m00s [106/107] Installing python3-biopython- 100% | 399.0 MiB/s | 30.3 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [107/107] Installing python3-nose-0:1.3 100% | 8.1 MiB/s | 1.3 MiB | 00m00s Warning: skipped PGP checks for 105 packages from repository: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Finish: build setup for ProDy-2.4.1-7.fc42.src.rpm Start: rpmbuild ProDy-2.4.1-7.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1726444800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.YAvvQF + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + test -d /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/rm -rf /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.fCQZes + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd /builddir/build/BUILD/ProDy-2.4.1-build + rm -rf ProDy-2.4.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ProDy-2.4.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd ProDy-2.4.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/ProDy-change_requires.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find prody/proteins/ccealign -name '*.h' -exec chmod 0644 '{}' ';' + find prody/proteins/ccealign -name '*.cpp' -exec chmod 0644 '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.8N7wXX + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-x86_64-cpython-313 creating build/lib.linux-x86_64-cpython-313/prody copying prody/__init__.py -> build/lib.linux-x86_64-cpython-313/prody creating build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/subset.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/selection.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/select.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/segment.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/residue.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/pointer.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/nbexclusion.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/improper.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/hierview.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/functions.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/flags.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/fields.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/donor.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/dihedral.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/crossterm.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/chain.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/bond.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/atommap.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/atomic.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/atomgroup.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/atom.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/angle.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/acceptor.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/atomic creating build/lib.linux-x86_64-cpython-313/prody/database copying prody/database/uniprot.py -> build/lib.linux-x86_64-cpython-313/prody/database copying prody/database/quartataweb.py -> build/lib.linux-x86_64-cpython-313/prody/database copying prody/database/pfam.py -> build/lib.linux-x86_64-cpython-313/prody/database copying prody/database/goa.py -> build/lib.linux-x86_64-cpython-313/prody/database copying prody/database/dali.py -> build/lib.linux-x86_64-cpython-313/prody/database copying prody/database/cath.py -> build/lib.linux-x86_64-cpython-313/prody/database copying prody/database/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/database creating build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/vmdfile.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/signature.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/sampling.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/rtb.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/plotting.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/perturb.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/pca.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/nmdfile.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/nma.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/modeset.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/mode.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/mechstiff.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/imanm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/heatmapper.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/gnm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/gamma.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/functions.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/exgnm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/exanm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/essa.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/entropy.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/editing.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/compare.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/clustenm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/bildfile.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/bbenm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/anm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/analysis.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/adaptive.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics creating build/lib.linux-x86_64-cpython-313/prody/ensemble copying prody/ensemble/pdbensemble.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble copying prody/ensemble/functions.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble copying prody/ensemble/ensemble.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble copying prody/ensemble/conformation.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble copying prody/ensemble/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble creating build/lib.linux-x86_64-cpython-313/prody/kdtree copying prody/kdtree/kdtree.py -> build/lib.linux-x86_64-cpython-313/prody/kdtree copying prody/kdtree/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/kdtree creating build/lib.linux-x86_64-cpython-313/prody/measure copying prody/measure/transform.py -> build/lib.linux-x86_64-cpython-313/prody/measure copying prody/measure/measure.py -> build/lib.linux-x86_64-cpython-313/prody/measure copying prody/measure/contacts.py -> build/lib.linux-x86_64-cpython-313/prody/measure copying prody/measure/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/measure creating build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/wwpdb.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/waterbridges.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/stride.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/starfile.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/pdbfile.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/pdbclusters.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/localpdb.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/header.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/functions.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/fixer.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/emdfile.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/dssp.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/compare.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/cifheader.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/ciffile.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/blastpdb.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/proteins creating build/lib.linux-x86_64-cpython-313/prody/sequence copying prody/sequence/sequence.py -> build/lib.linux-x86_64-cpython-313/prody/sequence copying prody/sequence/plotting.py -> build/lib.linux-x86_64-cpython-313/prody/sequence copying prody/sequence/msafile.py -> build/lib.linux-x86_64-cpython-313/prody/sequence copying prody/sequence/msa.py -> build/lib.linux-x86_64-cpython-313/prody/sequence copying prody/sequence/analysis.py -> build/lib.linux-x86_64-cpython-313/prody/sequence copying prody/sequence/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/sequence creating build/lib.linux-x86_64-cpython-313/prody/trajectory copying prody/trajectory/trajfile.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory copying prody/trajectory/trajectory.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory copying prody/trajectory/trajbase.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory copying prody/trajectory/psffile.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory copying prody/trajectory/frame.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory copying prody/trajectory/dcdfile.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory copying prody/trajectory/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory creating build/lib.linux-x86_64-cpython-313/prody/chromatin copying prody/chromatin/straw.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin copying prody/chromatin/norm.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin copying prody/chromatin/hic.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin copying prody/chromatin/functions.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin copying prody/chromatin/cluster.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin copying prody/chromatin/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin creating build/lib.linux-x86_64-cpython-313/prody/compounds copying prody/compounds/pdbligands.py -> build/lib.linux-x86_64-cpython-313/prody/compounds copying prody/compounds/functions.py -> build/lib.linux-x86_64-cpython-313/prody/compounds copying prody/compounds/ccd.py -> build/lib.linux-x86_64-cpython-313/prody/compounds copying prody/compounds/bird.py -> build/lib.linux-x86_64-cpython-313/prody/compounds copying prody/compounds/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/compounds creating build/lib.linux-x86_64-cpython-313/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> build/lib.linux-x86_64-cpython-313/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/domain_decomposition creating build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/settings.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/seqtools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/pathtools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/misctools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/logger.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/legacy.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/laptools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/eigtools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/drawtools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/doctools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/checkers.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/catchall.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/TreeConstruction.py -> build/lib.linux-x86_64-cpython-313/prody/utilities creating build/lib.linux-x86_64-cpython-313/prody/apps copying prody/apps/apptools.py -> build/lib.linux-x86_64-cpython-313/prody/apps copying prody/apps/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/apps creating build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_clustenm.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps creating build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps creating build/lib.linux-x86_64-cpython-313/prody/tests copying prody/tests/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests creating build/lib.linux-x86_64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps copying prody/tests/apps/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps creating build/lib.linux-x86_64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_select.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic copying prody/tests/atomic/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic creating build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles creating build/lib.linux-x86_64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics creating build/lib.linux-x86_64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble creating build/lib.linux-x86_64-cpython-313/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-x86_64-cpython-313/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/kdtree creating build/lib.linux-x86_64-cpython-313/prody/tests/measure copying prody/tests/measure/test_transform.py -> build/lib.linux-x86_64-cpython-313/prody/tests/measure copying prody/tests/measure/test_measure.py -> build/lib.linux-x86_64-cpython-313/prody/tests/measure copying prody/tests/measure/test_contacts.py -> build/lib.linux-x86_64-cpython-313/prody/tests/measure copying prody/tests/measure/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/measure creating build/lib.linux-x86_64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_header.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins copying prody/tests/proteins/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins creating build/lib.linux-x86_64-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence copying prody/tests/sequence/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence creating build/lib.linux-x86_64-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> build/lib.linux-x86_64-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-x86_64-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/trajectory creating build/lib.linux-x86_64-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-x86_64-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> build/lib.linux-x86_64-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> build/lib.linux-x86_64-cpython-313/prody/tests/utilities copying prody/tests/utilities/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/utilities creating build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_hex.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_h36.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build/temp.linux-x86_64-cpython-313 creating build/temp.linux-x86_64-cpython-313/prody creating build/temp.linux-x86_64-cpython-313/prody/dynamics gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/dynamics/rtbtools.c -o build/temp.linux-x86_64-cpython-313/prody/dynamics/rtbtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/dynamics/rtbtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/dynamics/rtbtools.cpython-313-x86_64-linux-gnu.so building 'prody.dynamics.smtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/dynamics/smtools.c -o build/temp.linux-x86_64-cpython-313/prody/dynamics/smtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/dynamics/smtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/dynamics/smtools.cpython-313-x86_64-linux-gnu.so building 'prody.sequence.msatools' extension creating build/temp.linux-x86_64-cpython-313/prody/sequence gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/msatools.c -o build/temp.linux-x86_64-cpython-313/prody/sequence/msatools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/sequence/msatools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/sequence/msatools.cpython-313-x86_64-linux-gnu.so building 'prody.sequence.msaio' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/msaio.c -o build/temp.linux-x86_64-cpython-313/prody/sequence/msaio.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/sequence/msaio.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/sequence/msaio.cpython-313-x86_64-linux-gnu.so building 'prody.sequence.seqtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/seqtools.c -o build/temp.linux-x86_64-cpython-313/prody/sequence/seqtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/sequence/seqtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/sequence/seqtools.cpython-313-x86_64-linux-gnu.so building 'prody.kdtree._CKDTree' extension creating build/temp.linux-x86_64-cpython-313/prody/kdtree gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/kdtree/KDTree.c -o build/temp.linux-x86_64-cpython-313/prody/kdtree/KDTree.o gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-x86_64-cpython-313/prody/kdtree/KDTreemodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/kdtree/KDTree.o build/temp.linux-x86_64-cpython-313/prody/kdtree/KDTreemodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/kdtree/_CKDTree.cpython-313-x86_64-linux-gnu.so building 'prody.proteins.ccealign' extension creating build/temp.linux-x86_64-cpython-313/prody/proteins creating build/temp.linux-x86_64-cpython-313/prody/proteins/ccealign gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Iprody/utilities/tnt -I/usr/include/python3.13 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-x86_64-cpython-313/prody/proteins/ccealign/ccealignmodule.o In file included from prody/utilities/tnt/tnt.h:41, from prody/proteins/ccealign/ccealignmodule.h:43, from prody/proteins/ccealign/ccealignmodule.cpp:38: In member function ‘TNT::Array1D::set_(double*, double*, double const&)’, inlined from ‘TNT::Array1D::Array1D(int, double const&)’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest(cePoint*, cePoint*, afp**, int, int, int)’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ~~~^~~ g++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/proteins/ccealign.cpython-313-x86_64-linux-gnu.so In member function ‘set_’, inlined from ‘__ct ’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘__builtin_memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ^ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.IGlXTT + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + '[' /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build + mkdir /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT --prefix /usr running install /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64 creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13 creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-313/prody/tests/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-313/prody/tests/utilities/test_checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-313/prody/tests/utilities/test_misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-313/prody/tests/utilities/test_pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-x86_64-cpython-313/prody/tests/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-x86_64-cpython-313/prody/tests/trajectory/test_dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-x86_64-cpython-313/prody/tests/trajectory/test_frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/test_analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/test_msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/test_msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/test_sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-313/prody/tests/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-313/prody/tests/measure/test_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-313/prody/tests/measure/test_measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-313/prody/tests/measure/test_transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree copying build/lib.linux-x86_64-cpython-313/prody/tests/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree copying build/lib.linux-x86_64-cpython-313/prody/tests/kdtree/test_kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/test_conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/test_ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/test_functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/test_pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/test_editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/test_enms.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/test_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/test_signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/mmcif_6yfy.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/mmcif_6zu5.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot.slx -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot.sth -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/xmlSTI.xml -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/dcd2k39_truncated.dcd -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/anm1ubi_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/exanm2nwl_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pca2k39_cov.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/rtb2gb1_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/rtb2gb1_project.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/anm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/anm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/commute1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/exanm2nwl_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/exanm2nwl_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/gnm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/gnm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/hit1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot_di.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pca2k39_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pca2k39_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1ejg.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1r19_dssp.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1ubi.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1ubi_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb2k39_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb2k39_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb2nwl-opm.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb3hsy.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb3mht.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb3o21.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb3p3w.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb4v8r_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb4v8r_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdbRTER.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_fragment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_examples.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-313/prody/tests/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_coevol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_conserv.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_filter.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_merge.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_occupancy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_rankorder.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_refine.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_search.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/nmaoptions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_align.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_biomol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_blast.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_eda.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_energy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps copying build/lib.linux-x86_64-cpython-313/prody/apps/apptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles/mod_res_map.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles/saxs_water.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-x86_64-cpython-313/prody/utilities/TreeConstruction.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/catchall.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/doctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/drawtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/eigtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/laptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/legacy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/logger.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/seqtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/settings.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition copying build/lib.linux-x86_64-cpython-313/prody/domain_decomposition/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition copying build/lib.linux-x86_64-cpython-313/prody/domain_decomposition/spectrus.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-313/prody/compounds/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-313/prody/compounds/bird.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-313/prody/compounds/ccd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-313/prody/compounds/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-313/prody/compounds/pdbligands.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-313/prody/chromatin/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-313/prody/chromatin/cluster.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-313/prody/chromatin/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-313/prody/chromatin/hic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-313/prody/chromatin/norm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-313/prody/chromatin/straw.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-313/prody/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-313/prody/trajectory/dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-313/prody/trajectory/frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-313/prody/trajectory/psffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-313/prody/trajectory/trajbase.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-313/prody/trajectory/trajectory.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-313/prody/trajectory/trajfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/seqtools.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/msaio.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/msatools.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/ccealign.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/blastpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/cifheader.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/emdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/fixer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/pdbclusters.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/starfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/stride.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/waterbridges.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-313/prody/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-313/prody/measure/contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-313/prody/measure/measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-313/prody/measure/transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree copying build/lib.linux-x86_64-cpython-313/prody/kdtree/_CKDTree.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree copying build/lib.linux-x86_64-cpython-313/prody/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree copying build/lib.linux-x86_64-cpython-313/prody/kdtree/kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-313/prody/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-313/prody/ensemble/conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-313/prody/ensemble/ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-313/prody/ensemble/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-313/prody/ensemble/pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/smtools.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/rtbtools.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/adaptive.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/bbenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/bildfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/entropy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/essa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/exanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/exgnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/gamma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/heatmapper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/imanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/mechstiff.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/mode.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/modeset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/nma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/nmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/perturb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/rtb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/sampling.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/vmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-x86_64-cpython-313/prody/database/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-x86_64-cpython-313/prody/database/cath.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-x86_64-cpython-313/prody/database/dali.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-x86_64-cpython-313/prody/database/goa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-x86_64-cpython-313/prody/database/pfam.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-x86_64-cpython-313/prody/database/quartataweb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-x86_64-cpython-313/prody/database/uniprot.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/acceptor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/angle.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/atom.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/atomgroup.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/bond.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/chain.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/crossterm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/dihedral.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/donor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/fields.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/flags.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/improper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/nbexclusion.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/pointer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/residue.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/segment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/selection.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_header.py to test_header.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_measure.py to test_measure.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_transform.py to test_transform.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_select.py to test_select.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_clustenm.py to prody_clustenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/apptools.py to apptools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/catchall.py to catchall.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/checkers.py to checkers.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/doctools.py to doctools.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/drawtools.py to drawtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/eigtools.py to eigtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/laptools.py to laptools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/legacy.py to legacy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/logger.py to logger.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/misctools.py to misctools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/pathtools.py to pathtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/seqtools.py to seqtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/settings.py to settings.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/bird.py to bird.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/ccd.py to ccd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/pdbligands.py to pdbligands.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/cluster.py to cluster.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/hic.py to hic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/norm.py to norm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/straw.py to straw.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/frame.py to frame.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/psffile.py to psffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/trajbase.py to trajbase.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/trajectory.py to trajectory.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/trajfile.py to trajfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/analysis.py to analysis.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/msa.py to msa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/msafile.py to msafile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/plotting.py to plotting.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/sequence.py to sequence.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/blastpdb.py to blastpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/ciffile.py to ciffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/cifheader.py to cifheader.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/compare.py to compare.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/dssp.py to dssp.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/emdfile.py to emdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/fixer.py to fixer.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/header.py to header.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py to localpdb.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/pdbfile.py to pdbfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/starfile.py to starfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/stride.py to stride.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/waterbridges.py to waterbridges.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/wwpdb.py to wwpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/contacts.py to contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/measure.py to measure.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/transform.py to transform.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree/kdtree.py to kdtree.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/conformation.py to conformation.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/ensemble.py to ensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/adaptive.py to adaptive.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/analysis.py to analysis.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/anm.py to anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/bbenm.py to bbenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/bildfile.py to bildfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/clustenm.py to clustenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/compare.py to compare.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/editing.py to editing.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/entropy.py to entropy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/essa.py to essa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/exanm.py to exanm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/exgnm.py to exgnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/gamma.py to gamma.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/gnm.py to gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/imanm.py to imanm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/mode.py to mode.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/modeset.py to modeset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/nma.py to nma.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/pca.py to pca.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/perturb.py to perturb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/plotting.py to plotting.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/rtb.py to rtb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/sampling.py to sampling.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/signature.py to signature.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/cath.py to cath.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/dali.py to dali.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/goa.py to goa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/pfam.py to pfam.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/quartataweb.py to quartataweb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/uniprot.py to uniprot.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/acceptor.py to acceptor.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/angle.py to angle.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atom.py to atom.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atomgroup.py to atomgroup.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atomic.py to atomic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atommap.py to atommap.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/bond.py to bond.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/chain.py to chain.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/crossterm.py to crossterm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/dihedral.py to dihedral.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/donor.py to donor.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/fields.py to fields.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/flags.py to flags.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/hierview.py to hierview.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/improper.py to improper.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/pointer.py to pointer.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/residue.py to residue.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/segment.py to segment.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/select.py to select.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/selection.py to selection.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/subset.py to subset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/__init__.py to __init__.cpython-313.pyc writing byte-compilation script '/tmp/tmpjvu4oqn7.py' /usr/bin/python3 /tmp/tmpjvu4oqn7.py /usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' removing /tmp/tmpjvu4oqn7.py running install_egg_info running egg_info creating ProDy.egg-info writing ProDy.egg-info/PKG-INFO writing dependency_links to ProDy.egg-info/dependency_links.txt writing entry points to ProDy.egg-info/entry_points.txt writing requirements to ProDy.egg-info/requires.txt writing top-level names to ProDy.egg-info/top_level.txt writing manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'prody/*/*/*.c' warning: no files found matching 'prody/*/*.cpp' warning: no files found matching 'prody/utilities/datafiles/*.txt' adding license file 'LICENSE.rst' writing manifest file 'ProDy.egg-info/SOURCES.txt' Copying ProDy.egg-info to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ProDy-2.4.1-py3.13.egg-info running install_scripts Installing evol script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin Installing prody script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + rm -rfv /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/__pycache__ + mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + rm -f /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody + cd scripts + cp -pr ./prody ./python3.13-prody + cp -pr ./evol ./python3.13-evol + sed -i '1s=^#!/usr/bin/\(python\|env python\)[0-9.]*=#!/usr/bin/python3=' ./prody ./evol ./python3.13-prody ./python3.13-evol + for i in prody-3.13 + touch -r ./python3.13-prody prody-3.13 + install -p prody-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + ln -sf /usr/bin/python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody-3.13 + for i in evol-3.13 + touch -r ./python3.13-evol evol-3.13 + install -p evol-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + ln -sf /usr/bin/python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol-3.13 + cd .. + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.4.1-7.fc42 --unique-debug-suffix -2.4.1-7.fc42.x86_64 --unique-debug-src-base ProDy-2.4.1-7.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1 find-debuginfo: starting Extracting debug info from 7 files DWARF-compressing 7 files sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/ProDy-2.4.1-7.fc42.x86_64 464 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13 Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13 using python3.13 /usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atomic.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/subset.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/select.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/selection.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atomgroup.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/nbexclusion.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/segment.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/flags.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/improper.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/residue.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/hierview.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/pointer.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/functions.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/crossterm.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/fields.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/fields.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/chain.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/donor.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/bond.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/acceptor.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/dihedral.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atom.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atommap.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/angle.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/uniprot.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/quartataweb.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/dali.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/pfam.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/cath.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/goa.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/vmdfile.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/plotting.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/functions.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/sampling.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/perturb.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/rtb.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/signature.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/pca.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/entropy.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/nma.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/functions.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/editing.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/nmdfile.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/modeset.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/exgnm.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/mode.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/compare.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/imanm.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/mechstiff.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/exanm.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/heatmapper.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/bildfile.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/compare.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/gnm.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/bbenm.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/gnm.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/clustenm.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/anm.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/gamma.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/essa.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/anm.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/gamma.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/analysis.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/adaptive.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/analysis.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/__pycache__/pdbensemble.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/__pycache__/functions.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/__pycache__/functions.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/__pycache__/conformation.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/__pycache__/ensemble.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree/__pycache__/kdtree.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree/__pycache__/kdtree.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/__pycache__/transform.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/__pycache__/measure.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/__pycache__/contacts.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/__pycache__/measure.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/wwpdb.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/pdbfile.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/pdbfile.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/waterbridges.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/compare.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/pdbclusters.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/pdbclusters.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/stride.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/compare.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/localpdb.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/stride.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/functions.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/starfile.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/cifheader.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/fixer.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/blastpdb.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/emdfile.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/header.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/blastpdb.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/ciffile.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/dssp.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/dssp.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/__pycache__/sequence.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/__pycache__/plotting.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/__pycache__/msafile.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/__pycache__/msa.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/__pycache__/msa.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__pycache__/trajfile.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/__pycache__/analysis.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__pycache__/trajectory.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__pycache__/trajectory.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__pycache__/trajbase.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__pycache__/frame.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__pycache__/psffile.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__pycache__/dcdfile.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__pycache__/norm.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__pycache__/straw.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__pycache__/cluster.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__pycache__/hic.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__pycache__/hic.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__pycache__/functions.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__pycache__/functions.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/__pycache__/pdbligands.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/__pycache__/functions.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/__pycache__/ccd.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/__pycache__/bird.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/__pycache__/spectrus.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/__pycache__/spectrus.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/seqtools.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/settings.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/logger.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/pathtools.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/logger.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/legacy.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/laptools.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/checkers.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/misctools.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/eigtools.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/catchall.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/doctools.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/drawtools.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/__pycache__/apptools.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/TreeConstruction.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_select.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_gnm.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_contacts.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_pca.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__pycache__/ciffile.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_fetch.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_clustenm.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_energy.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_anm.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_eda.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_catdcd.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_blast.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_align.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/nmaoptions.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_search.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_conserv.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_refine.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_rankorder.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_coevol.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_occupancy.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_merge.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_filter.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_fetch.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__pycache__/test_prody_pca.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__pycache__/test_prody_gnm.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__pycache__/test_prody_examples.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__pycache__/test_prody_catdcd.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__pycache__/test_prody_anm.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__pycache__/test_subset.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__pycache__/test_hierview.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__pycache__/test_fragment.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__pycache__/test_select.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__pycache__/test_atommap.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__pycache__/test_atomic.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles/__pycache__/__init__.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__pycache__/test_signature.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles/__pycache__/__init__.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__pycache__/test_signature.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__pycache__/test_pca.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__pycache__/test_editing.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__pycache__/test_enms.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/test_pdbensemble.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/test_functions.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/test_functions.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/test_conformation.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/test_ensemble.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/__pycache__/test_kdtree.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__pycache__/test_transform.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__pycache__/test_measure.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__pycache__/test_contacts.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_ciffile.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_localpdb.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_pdbfile.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_wwpdb.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_biomol.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_dssp.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_msa.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_sequence.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_msafile.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__pycache__/test_frame.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__pycache__/test_dcdfile.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_misctools.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_checkers.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_pathtools.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_header.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_analysis.cpython-313.opt-1.pyc: rewriting with normalized contents Scanned 89 directories and 714 files, processed 233 inodes, 233 modified (52 replaced + 181 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS/rpm-debuginfo.specpart Processing files: python3-ProDy-2.4.1-7.fc42.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.rcJjj0 + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd ProDy-2.4.1 + DOCDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/README.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.yQIAqd + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd ProDy-2.4.1 + LICENSEDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/LICENSE.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol warning: absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody Provides: ProDy = 0:2.4.1-7.fc42 python-ProDy = 2.4.1-7.fc42 python3-ProDy = 2.4.1-7.fc42 python3-ProDy(x86-64) = 2.4.1-7.fc42 python3.13-ProDy = 2.4.1-7.fc42 python3.13dist(prody) = 2.4.1 python3dist(prody) = 2.4.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.13 python3.13dist(biopython) python3.13dist(numpy) >= 1.10 python3.13dist(pyparsing) python3.13dist(scipy) python3.13dist(setuptools) Obsoletes: python-ProDy < 2.4.1-7.fc42 Processing files: ProDy-debugsource-2.4.1-7.fc42.x86_64 Provides: ProDy-debugsource = 2.4.1-7.fc42 ProDy-debugsource(x86-64) = 2.4.1-7.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-ProDy-debuginfo-2.4.1-7.fc42.x86_64 Provides: debuginfo(build-id) = 2d1c1f89dcf0628fa727b827e0fbd11c42b51b36 debuginfo(build-id) = 8f7af92ddcb163e96ca197c8cbdbc593c708cddf debuginfo(build-id) = ac4d8288d4fab5912bfb69da20ab312d694b97c0 debuginfo(build-id) = cd0bd116a32ec1bf97f7a1925368d5be0122bce3 debuginfo(build-id) = d087776cef480ca2d64be67cf80fc55a496453e3 debuginfo(build-id) = e777103f18220a9df584734424e2a664cd6670b6 debuginfo(build-id) = e8a0a03ab080c3c4445f5dec644f166099ff7239 python-ProDy-debuginfo = 2.4.1-7.fc42 python3-ProDy-debuginfo = 2.4.1-7.fc42 python3-ProDy-debuginfo(x86-64) = 2.4.1-7.fc42 python3.13-ProDy-debuginfo = 2.4.1-7.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: ProDy-debugsource(x86-64) = 2.4.1-7.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT Wrote: /builddir/build/RPMS/ProDy-debugsource-2.4.1-7.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/python3-ProDy-debuginfo-2.4.1-7.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/python3-ProDy-2.4.1-7.fc42.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.oUEbLp + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + test -d /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build + rm -rf /builddir/build/BUILD/ProDy-2.4.1-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody Finish: rpmbuild ProDy-2.4.1-7.fc42.src.rpm Finish: build phase for ProDy-2.4.1-7.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1727769680.503902/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-7.fc42.src.rpm) Config(child) 1 minutes 19 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "ProDy-debugsource", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "x86_64" }, { "name": "python3-ProDy-debuginfo", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "x86_64" }, { "name": "python3-ProDy", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "x86_64" }, { "name": "ProDy", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "src" } ] } RPMResults finished