Warning: Permanently added '3.230.167.114' (ED25519) to the list of known hosts. 100 25.9M 100 25.9M 0 0 432M 0 --:--:-- --:--:-- --:--:-- 433M INFO: Reading stdout from command: md5sum ProDy-2.4.1.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-s8sn4yvn/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-s8sn4yvn/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725633659.778062 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-s8sn4yvn/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-s8sn4yvn/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725633659.778062 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-s8sn4yvn/ProDy/ProDy.spec) Config(fedora-41-i686) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-i686-bootstrap-1725633659.778062/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:41 INFO: Pulling image: registry.fedoraproject.org/fedora:41 INFO: Copy content of container registry.fedoraproject.org/fedora:41 to /var/lib/mock/fedora-41-i686-bootstrap-1725633659.778062/root INFO: Checking that registry.fedoraproject.org/fedora:41 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:41 with podman image mount INFO: image registry.fedoraproject.org/fedora:41 as /var/lib/containers/storage/overlay/f90a96f734823c955512bea1f3375745a611876676ecdcedd9d21240640f1467/merged INFO: umounting image registry.fedoraproject.org/fedora:41 (/var/lib/containers/storage/overlay/f90a96f734823c955512bea1f3375745a611876676ecdcedd9d21240640f1467/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-i686-1725633659.778062/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-6.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.5.0-2.fc41.x86_64 dnf5-plugins-5.2.5.0-2.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: local 100% | 91.6 MiB/s | 12.6 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 135.7 MiB/s | 12.8 MiB | 00m00s Copr repository 100% | 9.0 MiB/s | 296.2 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash i686 5.2.32-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.3 MiB bzip2 i686 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 93.9 KiB coreutils i686 9.5-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.7 MiB cpio i686 2.15-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB diffutils i686 3.10-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB fedora-release noarch 42-0.3 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B findutils i686 1:4.10.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 MiB gawk i686 5.3.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB glibc-minimal-langpack i686 2.40.9000-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B grep i686 3.11-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB gzip i686 1.13-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 388.1 KiB info i686 7.1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 360.4 KiB patch i686 2.7.6-25.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 298.0 KiB redhat-rpm-config noarch 294-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 186.4 KiB rpm-build i686 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 178.1 KiB sed i686 4.9-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 860.6 KiB shadow-utils i686 2:4.15.1-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.0 MiB tar i686 2:1.35-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB unzip i686 6.0-64.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 396.3 KiB util-linux i686 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.5 MiB which i686 2.21-42.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.9 KiB xz i686 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB Installing dependencies: add-determinism i686 0.3.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB alternatives i686 1.30-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 65.5 KiB ansible-srpm-macros noarch 1-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.7 KiB audit-libs i686 4.0.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 341.8 KiB authselect i686 1.5.0-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 160.6 KiB authselect-libs i686 1.5.0-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 821.4 KiB basesystem noarch 11-21.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B binutils i686 2.43.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 25.4 MiB build-reproducibility-srpm-macros noarch 0.3.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 735.0 B bzip2-libs i686 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 76.0 KiB ca-certificates noarch 2024.2.68_v8.0.302-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB coreutils-common i686 9.5-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.2 MiB cracklib i686 2.9.11-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235.8 KiB crypto-policies noarch 20240828-1.git5f66e81.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.9 KiB curl i686 8.9.1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 799.4 KiB cyrus-sasl-lib i686 2.1.28-27.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB debugedit i686 5.0-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.9 KiB dwz i686 0.15-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 328.9 KiB ed i686 1.20.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 141.7 KiB efi-srpm-macros noarch 5-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils i686 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB elfutils-debuginfod-client i686 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55.3 KiB elfutils-default-yama-scope noarch 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf i686 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB elfutils-libs i686 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 700.8 KiB fedora-gpg-keys noarch 42-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 126.4 KiB fedora-release-common noarch 42-0.3 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.4 KiB fedora-release-identity-basic noarch 42-0.3 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0 B fedora-repos noarch 42-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 KiB fedora-repos-rawhide noarch 42-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 KiB file i686 5.45-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 94.5 KiB file-libs i686 5.45-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.9 MiB filesystem i686 3.18-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.0 B fonts-srpm-macros noarch 1:2.0.5-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55.8 KiB forge-srpm-macros noarch 0.3.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.0 KiB fpc-srpm-macros noarch 1.3-13.fc41 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-56.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf i686 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 87.0 KiB pkgconf-m4 noarch 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB pkgconf-pkg-config i686 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 979.0 B popt i686 1.19-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.0 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.14.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.7.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline i686 8.2-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 465.5 KiB rpm i686 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB rpm-build-libs i686 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.4 KiB rpm-libs i686 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 764.8 KiB rpm-sequoia i686 1.7.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB rust-srpm-macros noarch 26.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs i686 3.46.1-1.fc41 local 1.5 MiB systemd-libs i686 256.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB util-linux-core i686 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB xxhash-libs i686 0.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 115.9 KiB xz-libs i686 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229.8 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip i686 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 707.1 KiB zlib-ng-compat i686 2.1.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.4 KiB zstd i686 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB Installing groups: build Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation 177 MiB will be used (install 177 MiB, remove 0 B). [ 1/153] bzip2-0:1.0.8-19.fc41.i686 100% | 1.8 MiB/s | 52.8 KiB | 00m00s [ 2/153] coreutils-0:9.5-9.fc42.i686 100% | 37.6 MiB/s | 1.2 MiB | 00m00s [ 3/153] diffutils-0:3.10-8.fc41.i686 100% | 65.6 MiB/s | 403.3 KiB | 00m00s [ 4/153] fedora-release-0:42-0.3.noarc 100% | 3.0 MiB/s | 12.2 KiB | 00m00s [ 5/153] findutils-1:4.10.0-4.fc41.i68 100% | 89.7 MiB/s | 551.1 KiB | 00m00s [ 6/153] cpio-0:2.15-2.fc41.i686 100% | 12.9 MiB/s | 290.8 KiB | 00m00s [ 7/153] gawk-0:5.3.0-4.fc41.i686 100% | 130.8 MiB/s | 1.0 MiB | 00m00s [ 8/153] glibc-minimal-langpack-0:2.40 100% | 10.7 MiB/s | 120.9 KiB | 00m00s [ 9/153] grep-0:3.11-9.fc41.i686 100% | 48.1 MiB/s | 295.5 KiB | 00m00s [ 10/153] info-0:7.1-3.fc41.i686 100% | 36.3 MiB/s | 186.0 KiB | 00m00s [ 11/153] gzip-0:1.13-2.fc41.i686 100% | 14.4 MiB/s | 162.6 KiB | 00m00s [ 12/153] patch-0:2.7.6-25.fc41.i686 100% | 27.8 MiB/s | 142.2 KiB | 00m00s [ 13/153] bash-0:5.2.32-2.fc42.i686 100% | 23.2 MiB/s | 1.8 MiB | 00m00s [ 14/153] redhat-rpm-config-0:294-1.fc4 100% | 10.5 MiB/s | 75.5 KiB | 00m00s [ 15/153] rpm-build-0:4.19.93-1.fc42.i6 100% | 12.4 MiB/s | 76.5 KiB | 00m00s [ 16/153] sed-0:4.9-3.fc41.i686 100% | 50.7 MiB/s | 311.4 KiB | 00m00s [ 17/153] unzip-0:6.0-64.fc41.i686 100% | 29.4 MiB/s | 180.7 KiB | 00m00s [ 18/153] util-linux-0:2.40.2-8.fc42.i6 100% | 115.8 MiB/s | 1.2 MiB | 00m00s [ 19/153] shadow-utils-2:4.15.1-9.fc41. 100% | 60.0 MiB/s | 1.3 MiB | 00m00s [ 20/153] which-0:2.21-42.fc41.i686 100% | 8.1 MiB/s | 41.5 KiB | 00m00s [ 21/153] tar-2:1.35-4.fc41.i686 100% | 29.2 MiB/s | 866.7 KiB | 00m00s [ 22/153] xz-1:5.6.2-2.fc41.i686 100% | 50.2 MiB/s | 462.9 KiB | 00m00s [ 23/153] fedora-release-common-0:42-0. 100% | 4.5 MiB/s | 23.0 KiB | 00m00s [ 24/153] glibc-common-0:2.40.9000-1.fc 100% | 50.4 MiB/s | 413.2 KiB | 00m00s [ 25/153] rpm-0:4.19.93-1.fc42.i686 100% | 73.0 MiB/s | 523.5 KiB | 00m00s [ 26/153] coreutils-common-0:9.5-9.fc42 100% | 74.9 MiB/s | 2.1 MiB | 00m00s [ 27/153] libblkid-0:2.40.2-8.fc42.i686 100% | 19.2 MiB/s | 137.5 KiB | 00m00s [ 28/153] libfdisk-0:2.40.2-8.fc42.i686 100% | 24.6 MiB/s | 176.0 KiB | 00m00s [ 29/153] libmount-0:2.40.2-8.fc42.i686 100% | 26.6 MiB/s | 163.3 KiB | 00m00s [ 30/153] libsmartcols-0:2.40.2-8.fc42. 100% | 16.8 MiB/s | 86.2 KiB | 00m00s [ 31/153] glibc-0:2.40.9000-1.fc42.i686 100% | 53.3 MiB/s | 2.0 MiB | 00m00s [ 32/153] libuuid-0:2.40.2-8.fc42.i686 100% | 7.5 MiB/s | 30.6 KiB | 00m00s [ 33/153] fedora-repos-0:42-0.1.noarch 100% | 2.2 MiB/s | 9.2 KiB | 00m00s [ 34/153] util-linux-core-0:2.40.2-8.fc 100% | 52.3 MiB/s | 535.7 KiB | 00m00s [ 35/153] fedora-gpg-keys-0:42-0.1.noar 100% | 20.1 MiB/s | 123.3 KiB | 00m00s [ 36/153] fedora-repos-rawhide-0:42-0.1 100% | 2.1 MiB/s | 8.7 KiB | 00m00s [ 37/153] rpm-build-libs-0:4.19.93-1.fc 100% | 20.6 MiB/s | 105.5 KiB | 00m00s [ 38/153] rpm-libs-0:4.19.93-1.fc42.i68 100% | 47.5 MiB/s | 340.1 KiB | 00m00s [ 39/153] glibc-gconv-extra-0:2.40.9000 100% | 72.8 MiB/s | 1.7 MiB | 00m00s [ 40/153] xz-libs-1:5.6.2-2.fc41.i686 100% | 24.0 MiB/s | 122.7 KiB | 00m00s [ 41/153] libselinux-0:3.7-5.fc41.i686 100% | 18.0 MiB/s | 92.4 KiB | 00m00s [ 42/153] libxcrypt-0:4.4.36-7.fc41.i68 100% | 23.6 MiB/s | 120.6 KiB | 00m00s [ 43/153] ncurses-libs-0:6.5-2.20240629 100% | 49.6 MiB/s | 355.3 KiB | 00m00s [ 44/153] audit-libs-0:4.0.2-1.fc41.i68 100% | 25.2 MiB/s | 129.0 KiB | 00m00s [ 45/153] systemd-libs-0:256.5-1.fc42.i 100% | 68.6 MiB/s | 772.8 KiB | 00m00s [ 46/153] authselect-libs-0:1.5.0-7.fc4 100% | 40.5 MiB/s | 207.5 KiB | 00m00s [ 47/153] libcap-ng-0:0.8.5-3.fc41.i686 100% | 6.5 MiB/s | 33.2 KiB | 00m00s [ 48/153] pam-0:1.6.1-6.fc42.i686 100% | 74.2 MiB/s | 531.9 KiB | 00m00s [ 49/153] pam-libs-0:1.6.1-6.fc42.i686 100% | 9.7 MiB/s | 59.6 KiB | 00m00s [ 50/153] readline-0:8.2-11.fc42.i686 100% | 42.8 MiB/s | 219.0 KiB | 00m00s [ 51/153] zlib-ng-compat-0:2.1.7-2.fc41 100% | 20.0 MiB/s | 82.1 KiB | 00m00s [ 52/153] bzip2-libs-0:1.0.8-19.fc41.i6 100% | 10.1 MiB/s | 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756.0 KiB | 00m00s [ 66/153] elfutils-libs-0:0.191-8.fc41. 100% | 47.4 MiB/s | 290.9 KiB | 00m00s [ 67/153] libgomp-0:14.2.1-1.fc42.i686 100% | 49.6 MiB/s | 355.4 KiB | 00m00s [ 68/153] file-libs-0:5.45-7.fc41.i686 100% | 75.3 MiB/s | 770.6 KiB | 00m00s [ 69/153] debugedit-0:5.0-17.fc41.i686 100% | 15.8 MiB/s | 81.1 KiB | 00m00s [ 70/153] elfutils-0:0.191-8.fc41.i686 100% | 61.0 MiB/s | 561.9 KiB | 00m00s [ 71/153] file-0:5.45-7.fc41.i686 100% | 9.6 MiB/s | 49.1 KiB | 00m00s [ 72/153] pkgconf-pkg-config-0:2.3.0-1. 100% | 2.4 MiB/s | 10.0 KiB | 00m00s [ 73/153] binutils-0:2.43.1-1.fc42.i686 100% | 219.8 MiB/s | 5.9 MiB | 00m00s [ 74/153] libarchive-0:3.7.4-3.fc41.i68 100% | 36.7 MiB/s | 451.3 KiB | 00m00s [ 75/153] pkgconf-0:2.3.0-1.fc42.i686 100% | 4.9 MiB/s | 45.5 KiB | 00m00s [ 76/153] pkgconf-m4-0:2.3.0-1.fc42.noa 100% | 3.5 MiB/s | 14.3 KiB | 00m00s [ 77/153] libpkgconf-0:2.3.0-1.fc42.i68 100% | 8.1 MiB/s | 41.7 KiB | 00m00s [ 78/153] zstd-0:1.5.6-2.fc41.i686 100% | 55.6 MiB/s | 455.8 KiB | 00m00s [ 79/153] ansible-srpm-macros-0:1-16.fc 100% | 3.4 MiB/s | 20.8 KiB | 00m00s [ 80/153] curl-0:8.9.1-3.fc42.i686 100% | 39.2 MiB/s | 321.4 KiB | 00m00s [ 81/153] build-reproducibility-srpm-ma 100% | 2.6 MiB/s | 10.6 KiB | 00m00s [ 82/153] dwz-0:0.15-7.fc41.i686 100% | 28.5 MiB/s | 145.9 KiB | 00m00s [ 83/153] efi-srpm-macros-0:5-12.fc41.n 100% | 4.4 MiB/s | 22.4 KiB | 00m00s [ 84/153] fonts-srpm-macros-1:2.0.5-17. 100% | 6.6 MiB/s | 27.0 KiB | 00m00s [ 85/153] forge-srpm-macros-0:0.3.2-1.f 100% | 4.8 MiB/s | 19.7 KiB | 00m00s [ 86/153] fpc-srpm-macros-0:1.3-13.fc41 100% | 1.6 MiB/s | 8.0 KiB | 00m00s [ 87/153] ghc-srpm-macros-0:1.9.1-2.fc4 100% | 2.2 MiB/s | 9.1 KiB | 00m00s [ 88/153] gnat-srpm-macros-0:6-6.fc41.n 100% | 2.2 MiB/s | 9.0 KiB | 00m00s [ 89/153] go-srpm-macros-0:3.6.0-3.fc41 100% | 5.5 MiB/s | 28.0 KiB | 00m00s [ 90/153] kernel-srpm-macros-0:1.0-24.f 100% | 2.4 MiB/s | 9.9 KiB | 00m00s [ 91/153] lua-srpm-macros-0:1-14.fc41.n 100% | 2.2 MiB/s | 8.9 KiB | 00m00s [ 92/153] ocaml-srpm-macros-0:10-3.fc41 100% | 2.2 MiB/s | 9.2 KiB | 00m00s [ 93/153] package-notes-srpm-macros-0:0 100% | 2.4 MiB/s | 9.8 KiB | 00m00s [ 94/153] openblas-srpm-macros-0:2-18.f 100% | 1.9 MiB/s | 7.7 KiB | 00m00s [ 95/153] perl-srpm-macros-0:1-56.fc41. 100% | 2.1 MiB/s | 8.5 KiB | 00m00s [ 96/153] pyproject-srpm-macros-0:1.14. 100% | 3.3 MiB/s | 13.4 KiB | 00m00s [ 97/153] python-srpm-macros-0:3.13-3.f 100% | 5.8 MiB/s | 23.7 KiB | 00m00s [ 98/153] qt5-srpm-macros-0:5.15.15-1.f 100% | 2.2 MiB/s | 8.9 KiB | 00m00s [ 99/153] rust-srpm-macros-0:26.3-3.fc4 100% | 3.9 MiB/s | 12.1 KiB | 00m00s [100/153] qt6-srpm-macros-0:6.7.2-3.fc4 100% | 2.2 MiB/s | 9.1 KiB | 00m00s [101/153] zig-srpm-macros-0:1-3.fc41.no 100% | 2.0 MiB/s | 8.1 KiB | 00m00s [102/153] ed-0:1.20.2-2.fc41.i686 100% | 15.9 MiB/s | 81.2 KiB | 00m00s [103/153] zip-0:3.0-41.fc41.i686 100% | 52.2 MiB/s | 267.5 KiB | 00m00s [104/153] authselect-0:1.5.0-7.fc41.i68 100% | 23.2 MiB/s | 142.3 KiB | 00m00s 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00m00s [118/153] pcre2-0:10.44-1.fc41.1.i686 100% | 39.1 MiB/s | 240.0 KiB | 00m00s [119/153] lz4-libs-0:1.10.0-1.fc41.i686 100% | 17.9 MiB/s | 73.5 KiB | 00m00s [120/153] keyutils-libs-0:1.6.3-4.fc41. 100% | 7.8 MiB/s | 32.0 KiB | 00m00s [121/153] libxml2-0:2.12.8-2.fc41.i686 100% | 101.9 MiB/s | 730.6 KiB | 00m00s [122/153] libverto-0:0.3.2-9.fc41.i686 100% | 5.2 MiB/s | 21.2 KiB | 00m00s [123/153] basesystem-0:11-21.fc41.noarc 100% | 1.4 MiB/s | 7.4 KiB | 00m00s [124/153] gmp-1:6.3.0-2.fc41.i686 100% | 43.4 MiB/s | 311.3 KiB | 00m00s [125/153] mpfr-0:4.2.1-5.fc41.i686 100% | 53.7 MiB/s | 385.0 KiB | 00m00s [126/153] filesystem-0:3.18-23.fc41.i68 100% | 89.1 MiB/s | 1.1 MiB | 00m00s [127/153] fedora-release-identity-basic 100% | 2.5 MiB/s | 13.0 KiB | 00m00s [128/153] elfutils-debuginfod-client-0: 100% | 9.2 MiB/s | 37.6 KiB | 00m00s [129/153] elfutils-default-yama-scope-0 100% | 2.0 MiB/s | 12.3 KiB | 00m00s [130/153] p11-kit-0:0.25.5-3.fc41.i686 100% | 58.8 MiB/s | 481.9 KiB | 00m00s [131/153] libstdc++-0:14.2.1-1.fc42.i68 100% | 84.8 MiB/s | 954.8 KiB | 00m00s [132/153] p11-kit-trust-0:0.25.5-3.fc41 100% | 15.0 MiB/s | 137.8 KiB | 00m00s [133/153] alternatives-0:1.30-1.fc41.i6 100% | 8.4 MiB/s | 42.8 KiB | 00m00s [134/153] jansson-0:2.13.1-10.fc41.i686 100% | 9.0 MiB/s | 45.9 KiB | 00m00s [135/153] add-determinism-0:0.3.6-1.fc4 100% | 106.0 MiB/s | 868.7 KiB | 00m00s [136/153] pcre2-syntax-0:10.44-1.fc41.1 100% | 36.6 MiB/s | 149.9 KiB | 00m00s [137/153] libtasn1-0:4.19.0-9.fc41.i686 100% | 14.7 MiB/s | 75.3 KiB | 00m00s [138/153] libffi-0:3.4.6-3.fc42.i686 100% | 9.3 MiB/s | 38.0 KiB | 00m00s [139/153] xxhash-libs-0:0.8.2-3.fc41.i6 100% | 9.1 MiB/s | 46.8 KiB | 00m00s [140/153] libcurl-0:8.9.1-3.fc42.i686 100% | 38.1 MiB/s | 389.7 KiB | 00m00s [141/153] libbrotli-0:1.1.0-5.fc41.i686 100% | 47.3 MiB/s | 339.4 KiB | 00m00s [142/153] gdb-minimal-0:15.1-1.fc41.i68 100% | 196.6 MiB/s | 4.7 MiB | 00m00s [143/153] libnghttp2-0:1.63.0-1.fc42.i6 100% | 8.9 MiB/s | 82.3 KiB | 00m00s [144/153] libidn2-0:2.3.7-2.fc41.i686 100% | 10.0 MiB/s | 113.0 KiB | 00m00s [145/153] libssh-config-0:0.11.1-1.fc42 100% | 2.3 MiB/s | 9.4 KiB | 00m00s [146/153] libpsl-0:0.21.5-4.fc41.i686 100% | 12.6 MiB/s | 64.7 KiB | 00m00s [147/153] libssh-0:0.11.1-1.fc42.i686 100% | 48.8 MiB/s | 250.0 KiB | 00m00s [148/153] openldap-0:2.6.8-5.fc41.i686 100% | 53.2 MiB/s | 272.3 KiB | 00m00s [149/153] libevent-0:2.1.12-14.fc41.i68 100% | 45.1 MiB/s | 277.0 KiB | 00m00s [150/153] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 105.0 MiB/s | 860.0 KiB | 00m00s [151/153] libtool-ltdl-0:2.4.7-12.fc41. 100% | 9.2 MiB/s | 37.7 KiB | 00m00s [152/153] libunistring-0:1.1-8.fc41.i68 100% | 77.2 MiB/s | 553.3 KiB | 00m00s [153/153] publicsuffix-list-dafsa-0:202 100% | 9.5 MiB/s | 58.3 KiB | 00m00s -------------------------------------------------------------------------------- [153/153] Total 100% | 122.3 MiB/s | 53.4 MiB | 00m00s Running transaction [ 1/155] Verify package files 100% | 974.0 B/s | 153.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.i686 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-23.fc41.i686 [ 2/155] Prepare transaction 100% | 4.7 KiB/s | 153.0 B | 00m00s [ 3/155] Installing publicsuffix-list- 100% | 0.0 B/s | 68.3 KiB | 00m00s [ 4/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/155] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB | 00m00s [ 6/155] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 7/155] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 8/155] Installing fedora-gpg-keys-0: 100% | 56.1 MiB/s | 172.2 KiB | 00m00s [ 9/155] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/155] Installing fedora-release-com 100% | 0.0 B/s | 23.7 KiB | 00m00s [ 11/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/155] Installing setup-0:2.15.0-5.f 100% | 70.9 MiB/s | 726.1 KiB | 00m00s >>> Running post-install scriptlet: setup-0:2.15.0-5.fc41.noarch >>> Stop post-install scriptlet: setup-0:2.15.0-5.fc41.noarch [ 13/155] Installing filesystem-0:3.18- 100% | 3.9 MiB/s | 212.0 KiB | 00m00s [ 14/155] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 15/155] Installing ncurses-base-0:6.5 100% | 114.5 MiB/s | 351.7 KiB | 00m00s [ 16/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [ 17/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [ 18/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 19/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [ 20/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [ 21/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [ 22/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [ 23/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [ 24/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [ 25/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 26/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [ 27/155] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [ 28/155] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 29/155] Installing coreutils-common-0 100% | 466.3 MiB/s | 11.2 MiB | 00m00s [ 30/155] Installing libgcc-0:14.2.1-1. 100% | 296.2 MiB/s | 303.4 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.2.1-1.fc42.i686 >>> Stop post-install scriptlet: libgcc-0:14.2.1-1.fc42.i686 [ 31/155] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 32/155] Installing ncurses-libs-0:6.5 100% | 238.7 MiB/s | 977.6 KiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.40.9000-1.fc42.i686 >>> Stop pre-install scriptlet: glibc-0:2.40.9000-1.fc42.i686 warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 33/155] Installing glibc-0:2.40.9000- 100% | 240.4 MiB/s | 5.5 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.40.9000-1.fc42.i686 >>> Stop post-install scriptlet: glibc-0:2.40.9000-1.fc42.i686 [ 34/155] Installing bash-0:5.2.32-2.fc 100% | 461.2 MiB/s | 8.3 MiB | 00m00s >>> Running post-install scriptlet: bash-0:5.2.32-2.fc42.i686 >>> Stop post-install scriptlet: bash-0:5.2.32-2.fc42.i686 [ 35/155] Installing glibc-common-0:2.4 100% | 209.0 MiB/s | 1.0 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 36/155] Installing glibc-gconv-extra- 100% | 269.1 MiB/s | 7.8 MiB | 00m00s >>> Running post-install scriptlet: glibc-gconv-extra-0:2.40.9000-1.fc42.i686 >>> Stop post-install scriptlet: glibc-gconv-extra-0:2.40.9000-1.fc42.i686 [ 37/155] Installing zlib-ng-compat-0:2 100% | 146.7 MiB/s | 150.2 KiB | 00m00s [ 38/155] Installing xz-libs-1:5.6.2-2. 100% | 225.4 MiB/s | 230.9 KiB | 00m00s [ 39/155] Installing bzip2-libs-0:1.0.8 100% | 0.0 B/s | 77.1 KiB | 00m00s [ 40/155] Installing libuuid-0:2.40.2-8 100% | 0.0 B/s | 41.8 KiB | 00m00s [ 41/155] Installing readline-0:8.2-11. 100% | 456.7 MiB/s | 467.6 KiB | 00m00s [ 42/155] Installing popt-0:1.19-7.fc41 100% | 69.6 MiB/s | 142.6 KiB | 00m00s [ 43/155] Installing libblkid-0:2.40.2- 100% | 279.9 MiB/s | 286.6 KiB | 00m00s [ 44/155] Installing libxcrypt-0:4.4.36 100% | 274.3 MiB/s | 280.9 KiB | 00m00s [ 45/155] Installing libattr-0:2.5.2-4. 100% | 0.0 B/s | 24.7 KiB | 00m00s [ 46/155] Installing libacl-0:2.3.2-2.f 100% | 0.0 B/s | 40.1 KiB | 00m00s [ 47/155] Installing libzstd-0:1.5.6-2. 100% | 355.7 MiB/s | 728.4 KiB | 00m00s [ 48/155] Installing elfutils-libelf-0: 100% | 392.2 MiB/s | 1.2 MiB | 00m00s [ 49/155] Installing gmp-1:6.3.0-2.fc41 100% | 361.7 MiB/s | 740.7 KiB | 00m00s [ 50/155] Installing libstdc++-0:14.2.1 100% | 401.1 MiB/s | 2.8 MiB | 00m00s [ 51/155] Installing libeconf-0:0.6.2-3 100% | 0.0 B/s | 62.9 KiB | 00m00s [ 52/155] Installing gdbm-libs-1:1.23-7 100% | 20.6 MiB/s | 126.3 KiB | 00m00s >>> Running pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42. >>> Stop pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.noa [ 53/155] Installing crypto-policies-0: 100% | 39.8 MiB/s | 163.2 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42 >>> Stop post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.no [ 54/155] Installing mpfr-0:4.2.1-5.fc4 100% | 315.2 MiB/s | 968.2 KiB | 00m00s [ 55/155] Installing gawk-0:5.3.0-4.fc4 100% | 346.3 MiB/s | 1.7 MiB | 00m00s [ 56/155] Installing dwz-0:0.15-7.fc41. 100% | 322.5 MiB/s | 330.3 KiB | 00m00s [ 57/155] Installing unzip-0:6.0-64.fc4 100% | 390.4 MiB/s | 399.8 KiB | 00m00s [ 58/155] Installing file-libs-0:5.45-7 100% | 710.4 MiB/s | 9.9 MiB | 00m00s [ 59/155] Installing file-0:5.45-7.fc41 100% | 0.0 B/s | 96.0 KiB | 00m00s [ 60/155] Installing libsmartcols-0:2.4 100% | 180.5 MiB/s | 184.8 KiB | 00m00s [ 61/155] Installing libcap-ng-0:0.8.5- 100% | 0.0 B/s | 69.5 KiB | 00m00s [ 62/155] Installing audit-libs-0:4.0.2 100% | 335.9 MiB/s | 343.9 KiB | 00m00s [ 63/155] Installing pam-libs-0:1.6.1-6 100% | 131.8 MiB/s | 134.9 KiB | 00m00s [ 64/155] Installing libcap-0:2.70-4.fc 100% | 205.1 MiB/s | 210.0 KiB | 00m00s [ 65/155] Installing systemd-libs-0:256 100% | 404.2 MiB/s | 2.0 MiB | 00m00s [ 66/155] Installing lua-libs-0:5.4.6-6 100% | 302.5 MiB/s | 309.8 KiB | 00m00s [ 67/155] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 59.6 KiB | 00m00s [ 68/155] Installing libsepol-0:3.7-2.f 100% | 426.9 MiB/s | 874.4 KiB | 00m00s [ 69/155] Installing pcre2-0:10.44-1.fc 100% | 323.0 MiB/s | 661.5 KiB | 00m00s [ 70/155] Installing libselinux-0:3.7-5 100% | 189.0 MiB/s | 193.5 KiB | 00m00s [ 71/155] Installing sed-0:4.9-3.fc41.i 100% | 282.8 MiB/s | 868.8 KiB | 00m00s [ 72/155] Installing grep-0:3.11-9.fc41 100% | 251.6 MiB/s | 1.0 MiB | 00m00s [ 73/155] Installing findutils-1:4.10.0 100% | 375.9 MiB/s | 1.9 MiB | 00m00s [ 74/155] Installing xz-1:5.6.2-2.fc41. 100% | 301.8 MiB/s | 1.2 MiB | 00m00s [ 75/155] Installing libmount-0:2.40.2- 100% | 378.9 MiB/s | 388.0 KiB | 00m00s [ 76/155] Installing lz4-libs-0:1.10.0- 100% | 142.4 MiB/s | 145.9 KiB | 00m00s [ 77/155] Installing alternatives-0:1.3 100% | 65.4 MiB/s | 67.0 KiB | 00m00s [ 78/155] Installing libtasn1-0:4.19.0- 100% | 176.6 MiB/s | 180.8 KiB | 00m00s [ 79/155] Installing libunistring-0:1.1 100% | 433.5 MiB/s | 1.7 MiB | 00m00s [ 80/155] Installing elfutils-default-y 100% | 510.7 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.noar [ 81/155] Installing elfutils-libs-0:0. 100% | 343.1 MiB/s | 702.6 KiB | 00m00s [ 82/155] Installing libidn2-0:2.3.7-2. 100% | 161.3 MiB/s | 330.3 KiB | 00m00s [ 83/155] Installing libpsl-0:0.21.5-4. 100% | 0.0 B/s | 76.9 KiB | 00m00s [ 84/155] Installing zstd-0:1.5.6-2.fc4 100% | 390.9 MiB/s | 1.6 MiB | 00m00s [ 85/155] Installing util-linux-core-0: 100% | 289.3 MiB/s | 1.4 MiB | 00m00s [ 86/155] Installing tar-2:1.35-4.fc41. 100% | 428.5 MiB/s | 3.0 MiB | 00m00s [ 87/155] Installing libsemanage-0:3.7- 100% | 149.3 MiB/s | 305.9 KiB | 00m00s [ 88/155] Installing shadow-utils-2:4.1 100% | 291.3 MiB/s | 4.1 MiB | 00m00s [ 89/155] Installing zip-0:3.0-41.fc41. 100% | 347.1 MiB/s | 711.0 KiB | 00m00s [ 90/155] Installing gdbm-1:1.23-7.fc41 100% | 222.0 MiB/s | 454.7 KiB | 00m00s [ 91/155] Installing cyrus-sasl-lib-0:2 100% | 413.4 MiB/s | 2.5 MiB | 00m00s [ 92/155] Installing libfdisk-0:2.40.2- 100% | 401.8 MiB/s | 411.5 KiB | 00m00s [ 93/155] Installing bzip2-0:1.0.8-19.f 100% | 96.1 MiB/s | 98.4 KiB | 00m00s [ 94/155] Installing libxml2-0:2.12.8-2 100% | 452.7 MiB/s | 1.8 MiB | 00m00s [ 95/155] Installing sqlite-libs-0:3.46 100% | 375.0 MiB/s | 1.5 MiB | 00m00s [ 96/155] Installing add-determinism-0: 100% | 414.3 MiB/s | 2.1 MiB | 00m00s [ 97/155] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 98/155] Installing ed-0:1.20.2-2.fc41 100% | 140.6 MiB/s | 144.0 KiB | 00m00s [ 99/155] Installing patch-0:2.7.6-25.f 100% | 292.5 MiB/s | 299.5 KiB | 00m00s [100/155] Installing cpio-0:2.15-2.fc41 100% | 368.5 MiB/s | 1.1 MiB | 00m00s [101/155] Installing diffutils-0:3.10-8 100% | 319.0 MiB/s | 1.6 MiB | 00m00s [102/155] Installing libgomp-0:14.2.1-1 100% | 511.6 MiB/s | 523.9 KiB | 00m00s [103/155] Installing libpkgconf-0:2.3.0 100% | 0.0 B/s | 81.8 KiB | 00m00s [104/155] Installing pkgconf-0:2.3.0-1. 100% | 87.4 MiB/s | 89.5 KiB | 00m00s [105/155] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [106/155] Installing keyutils-libs-0:1. 100% | 0.0 B/s | 59.1 KiB | 00m00s [107/155] Installing libverto-0:0.3.2-9 100% | 0.0 B/s | 30.6 KiB | 00m00s [108/155] Installing jansson-0:2.13.1-1 100% | 0.0 B/s | 89.0 KiB | 00m00s [109/155] Installing libffi-0:3.4.6-3.f 100% | 0.0 B/s | 82.9 KiB | 00m00s [110/155] Installing p11-kit-0:0.25.5-3 100% | 333.2 MiB/s | 2.3 MiB | 00m00s [111/155] Installing p11-kit-trust-0:0. 100% | 59.1 MiB/s | 363.2 KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.i686 >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.i686 [112/155] Installing openssl-libs-1:3.2 100% | 391.6 MiB/s | 6.3 MiB | 00m00s [113/155] Installing coreutils-0:9.5-9. 100% | 317.0 MiB/s | 5.7 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n >>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar [114/155] Installing ca-certificates-0: 100% | 2.7 MiB/s | 2.4 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41. >>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noa [115/155] Installing krb5-libs-0:1.21.3 100% | 292.1 MiB/s | 2.3 MiB | 00m00s [116/155] Installing libarchive-0:3.7.4 100% | 324.3 MiB/s | 996.4 KiB | 00m00s [117/155] Installing libtirpc-0:1.3.5-0 100% | 210.6 MiB/s | 215.6 KiB | 00m00s [118/155] Installing gzip-0:1.13-2.fc41 100% | 192.2 MiB/s | 393.6 KiB | 00m00s [119/155] Installing authselect-libs-0: 100% | 204.2 MiB/s | 836.4 KiB | 00m00s [120/155] Installing cracklib-0:2.9.11- 100% | 80.4 MiB/s | 247.1 KiB | 00m00s [121/155] Installing libpwquality-0:1.4 100% | 137.7 MiB/s | 423.0 KiB | 00m00s [122/155] Installing libnsl2-0:2.0.1-2. 100% | 56.9 MiB/s | 58.3 KiB | 00m00s [123/155] Installing pam-0:1.6.1-6.fc42 100% | 164.5 MiB/s | 1.8 MiB | 00m00s [124/155] Installing libssh-0:0.11.1-1. 100% | 299.6 MiB/s | 613.7 KiB | 00m00s [125/155] Installing rpm-sequoia-0:1.7. 100% | 375.1 MiB/s | 2.6 MiB | 00m00s [126/155] Installing rpm-libs-0:4.19.93 100% | 374.2 MiB/s | 766.4 KiB | 00m00s [127/155] Installing rpm-build-libs-0:4 100% | 205.3 MiB/s | 210.2 KiB | 00m00s [128/155] Installing libevent-0:2.1.12- 100% | 466.7 MiB/s | 955.9 KiB | 00m00s [129/155] Installing xxhash-libs-0:0.8. 100% | 0.0 B/s | 117.3 KiB | 00m00s [130/155] Installing libbrotli-0:1.1.0- 100% | 420.8 MiB/s | 861.8 KiB | 00m00s [131/155] Installing libnghttp2-0:1.63. 100% | 170.5 MiB/s | 174.6 KiB | 00m00s [132/155] Installing libtool-ltdl-0:2.4 100% | 0.0 B/s | 70.6 KiB | 00m00s [133/155] Installing openldap-0:2.6.8-5 100% | 332.7 MiB/s | 681.5 KiB | 00m00s [134/155] Installing libcurl-0:8.9.1-3. 100% | 413.7 MiB/s | 847.2 KiB | 00m00s [135/155] Installing elfutils-debuginfo 100% | 55.9 MiB/s | 57.3 KiB | 00m00s [136/155] Installing binutils-0:2.43.1- 100% | 423.9 MiB/s | 25.4 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.43.1-1.fc42.i686 >>> Stop post-install scriptlet: binutils-0:2.43.1-1.fc42.i686 [137/155] Installing elfutils-0:0.191-8 100% | 423.4 MiB/s | 2.5 MiB | 00m00s [138/155] Installing gdb-minimal-0:15.1 100% | 438.6 MiB/s | 13.6 MiB | 00m00s [139/155] Installing debugedit-0:5.0-17 100% | 191.0 MiB/s | 195.6 KiB | 00m00s [140/155] Installing curl-0:8.9.1-3.fc4 100% | 78.3 MiB/s | 801.9 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.93-1.fc42.i686 >>> Stop pre-install scriptlet: rpm-0:4.19.93-1.fc42.i686 [141/155] Installing rpm-0:4.19.93-1.fc 100% | 206.7 MiB/s | 2.5 MiB | 00m00s [142/155] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.2 KiB | 00m00s [143/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [144/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.4 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 0.0 B/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 188.4 MiB/s | 192.9 KiB | 00m00s [150/155] Installing rpm-build-0:4.19.9 100% | 91.2 MiB/s | 186.8 KiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 187.1 MiB/s | 3.6 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-8.fc42.i686 >>> Stop post-install scriptlet: util-linux-0:2.40.2-8.fc42.i686 [153/155] Installing authselect-0:1.5.0 100% | 80.6 MiB/s | 165.0 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 79.2 MiB/s | 81.1 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [155/155] Installing info-0:7.1-3.fc41. 100% | 329.5 KiB/s | 360.8 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.i686 >>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.i686 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.i686 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.i686 >>> Running post-transaction scriptlet: rpm-0:4.19.93-1.fc42.i686 >>> Stop post-transaction scriptlet: rpm-0:4.19.93-1.fc42.i686 >>> Running trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.i686 >>> Stop trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.i686 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.i686 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.i686 Complete! Warning: skipped PGP checks for 153 packages from repositories: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch, local Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.i686 alternatives-1.30-1.fc41.i686 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.i686 authselect-1.5.0-7.fc41.i686 authselect-libs-1.5.0-7.fc41.i686 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.i686 binutils-2.43.1-1.fc42.i686 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.i686 bzip2-libs-1.0.8-19.fc41.i686 ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch coreutils-9.5-9.fc42.i686 coreutils-common-9.5-9.fc42.i686 cpio-2.15-2.fc41.i686 cracklib-2.9.11-6.fc41.i686 crypto-policies-20240828-1.git5f66e81.fc42.noarch curl-8.9.1-3.fc42.i686 cyrus-sasl-lib-2.1.28-27.fc41.i686 debugedit-5.0-17.fc41.i686 diffutils-3.10-8.fc41.i686 dwz-0.15-7.fc41.i686 ed-1.20.2-2.fc41.i686 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.i686 elfutils-debuginfod-client-0.191-8.fc41.i686 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.i686 elfutils-libs-0.191-8.fc41.i686 fedora-gpg-keys-42-0.1.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.1.noarch fedora-repos-rawhide-42-0.1.noarch file-5.45-7.fc41.i686 file-libs-5.45-7.fc41.i686 filesystem-3.18-23.fc41.i686 findutils-4.10.0-4.fc41.i686 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.i686 gdb-minimal-15.1-1.fc41.i686 gdbm-1.23-7.fc41.i686 gdbm-libs-1.23-7.fc41.i686 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40.9000-1.fc42.i686 glibc-common-2.40.9000-1.fc42.i686 glibc-gconv-extra-2.40.9000-1.fc42.i686 glibc-minimal-langpack-2.40.9000-1.fc42.i686 gmp-6.3.0-2.fc41.i686 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch grep-3.11-9.fc41.i686 gzip-1.13-2.fc41.i686 info-7.1-3.fc41.i686 jansson-2.13.1-10.fc41.i686 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.i686 krb5-libs-1.21.3-2.fc41.i686 libacl-2.3.2-2.fc41.i686 libarchive-3.7.4-3.fc41.i686 libattr-2.5.2-4.fc41.i686 libblkid-2.40.2-8.fc42.i686 libbrotli-1.1.0-5.fc41.i686 libcap-2.70-4.fc41.i686 libcap-ng-0.8.5-3.fc41.i686 libcom_err-1.47.1-3.fc41.i686 libcurl-8.9.1-3.fc42.i686 libeconf-0.6.2-3.fc41.i686 libevent-2.1.12-14.fc41.i686 libfdisk-2.40.2-8.fc42.i686 libffi-3.4.6-3.fc42.i686 libgcc-14.2.1-1.fc42.i686 libgomp-14.2.1-1.fc42.i686 libidn2-2.3.7-2.fc41.i686 libmount-2.40.2-8.fc42.i686 libnghttp2-1.63.0-1.fc42.i686 libnsl2-2.0.1-2.fc41.i686 libpkgconf-2.3.0-1.fc42.i686 libpsl-0.21.5-4.fc41.i686 libpwquality-1.4.5-11.fc41.i686 libselinux-3.7-5.fc41.i686 libsemanage-3.7-2.fc41.i686 libsepol-3.7-2.fc41.i686 libsmartcols-2.40.2-8.fc42.i686 libssh-0.11.1-1.fc42.i686 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-1.fc42.i686 libtasn1-4.19.0-9.fc41.i686 libtirpc-1.3.5-0.fc41.i686 libtool-ltdl-2.4.7-12.fc41.i686 libunistring-1.1-8.fc41.i686 libuuid-2.40.2-8.fc42.i686 libverto-0.3.2-9.fc41.i686 libxcrypt-4.4.36-7.fc41.i686 libxml2-2.12.8-2.fc41.i686 libzstd-1.5.6-2.fc41.i686 lua-libs-5.4.6-6.fc41.i686 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.i686 mpfr-4.2.1-5.fc41.i686 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.i686 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.i686 openssl-libs-3.2.2-5.fc41.i686 p11-kit-0.25.5-3.fc41.i686 p11-kit-trust-0.25.5-3.fc41.i686 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc42.i686 pam-libs-1.6.1-6.fc42.i686 patch-2.7.6-25.fc41.i686 pcre2-10.44-1.fc41.1.i686 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.i686 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.i686 popt-1.19-7.fc41.i686 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.14.0-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.i686 redhat-rpm-config-294-1.fc42.noarch rpm-4.19.93-1.fc42.i686 rpm-build-4.19.93-1.fc42.i686 rpm-build-libs-4.19.93-1.fc42.i686 rpm-libs-4.19.93-1.fc42.i686 rpm-sequoia-1.7.0-2.fc41.i686 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.i686 setup-2.15.0-5.fc41.noarch shadow-utils-4.15.1-9.fc41.i686 sqlite-libs-3.46.1-1.fc41.i686 systemd-libs-256.5-1.fc42.i686 tar-1.35-4.fc41.i686 unzip-6.0-64.fc41.i686 util-linux-2.40.2-8.fc42.i686 util-linux-core-2.40.2-8.fc42.i686 which-2.21-42.fc41.i686 xxhash-libs-0.8.2-3.fc41.i686 xz-5.6.2-2.fc41.i686 xz-libs-5.6.2-2.fc41.i686 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.i686 zlib-ng-compat-2.1.7-2.fc41.i686 zstd-1.5.6-2.fc41.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1725580800 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-7.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-41-i686-1725633659.778062/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-i686-1725633659.778062/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-s8sn4yvn/ProDy/ProDy.spec) Config(child) 0 minutes 18 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-7.fc42.src.rpm) Config(fedora-41-i686) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-i686-bootstrap-1725633659.778062/root. INFO: reusing tmpfs at /var/lib/mock/fedora-41-i686-bootstrap-1725633659.778062/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-i686-1725633659.778062/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-6.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.5.0-2.fc41.x86_64 dnf5-plugins-5.2.5.0-2.fc41.x86_64 Finish: chroot init Start: build phase for ProDy-2.4.1-7.fc42.src.rpm Start: build setup for ProDy-2.4.1-7.fc42.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1725580800 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-7.fc42.src.rpm Updating and loading repositories: Copr repository 100% | 102.1 KiB/s | 1.5 KiB | 00m00s local 100% | 218.4 KiB/s | 3.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 182.2 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: gcc i686 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101.7 MiB gcc-c++ i686 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38.9 MiB python3-biopython i686 1.84-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30.0 MiB python3-devel i686 3.13.0~rc1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB python3-matplotlib i686 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21.1 MiB python3-nose noarch 1.3.7-59.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB python3-numpy i686 1:1.26.4-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36.6 MiB python3-scipy i686 1.11.3-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64.6 MiB python3-setuptools noarch 69.2.0-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 MiB python3-urllib3 noarch 1.26.19-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.7 KiB annobin-docs noarch 12.70-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 97.7 KiB annobin-plugin-gcc i686 12.70-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 984.6 KiB cairo i686 1.18.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB cpp i686 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.6 MiB default-fonts-core-sans noarch 4.1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.9 KiB dejavu-sans-fonts noarch 2.37-24.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.5 MiB expat i686 2.6.3-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 294.0 KiB flex i686 2.6.4-18.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 787.3 KiB flexiblas i686 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 48.5 KiB flexiblas-netlib i686 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.5 MiB flexiblas-openblas-openmp i686 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30.6 KiB fontconfig i686 2.15.0-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 779.2 KiB fonts-filesystem noarch 1:2.0.5-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B freetype i686 2.13.2-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 858.5 KiB fribidi i686 1.0.15-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 366.4 KiB gcc-plugin-annobin i686 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 59.8 KiB glib2 i686 2.82.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 15.1 MiB glibc-devel i686 2.40.9000-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 31.7 KiB glibc-headers-x86 noarch 2.40.9000-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB gnutls i686 3.8.7-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.4 MiB google-noto-fonts-common noarch 20240901-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17.5 KiB google-noto-sans-vf-fonts noarch 20240901-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB graphite2 i686 1.3.14-16.fc41 copr_base 194.5 KiB harfbuzz i686 9.0.0-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.7 MiB jbigkit-libs i686 2.1-30.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.2 KiB kernel-headers i686 6.11.0-0.rc6.49.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.4 MiB lcms2 i686 2.16-4.fc41 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.9 MiB libimagequant i686 4.0.3-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 678.2 KiB libjpeg-turbo i686 3.0.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 840.9 KiB liblerc i686 4.0.0-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 646.9 KiB libmpc i686 1.3.1-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 168.0 KiB libpng i686 2:1.6.40-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 257.2 KiB libqhull_r i686 1:8.0.2-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 514.8 KiB libquadmath i686 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 513.2 KiB libraqm i686 0.8.0-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 23.9 KiB libstdc++-devel i686 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.9 MiB libtiff i686 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB python3-platformdirs noarch 4.2.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 168.6 KiB python3-pooch noarch 1.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 625.5 KiB python3-pyparsing noarch 3.1.2-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB python3-requests noarch 2.32.3-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 485.9 KiB python3-rpm-generators noarch 14-11.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.4 KiB python3-six noarch 1.16.0-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 118.3 KiB python3-tkinter i686 3.13.0~rc1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB tcl i686 1:8.6.14-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.3 MiB tk i686 1:8.6.14-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.7 MiB tzdata noarch 2024a-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB xml-common noarch 0.6.3-65.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB Transaction Summary: Installing: 108 packages Total size of inbound packages is 159 MiB. Need to download 159 MiB. After this operation 552 MiB will be used (install 552 MiB, remove 0 B). [ 1/108] python3-biopython-0:1.84-3.fc 100% | 125.8 MiB/s | 11.6 MiB | 00m00s [ 2/108] python3-devel-0:3.13.0~rc1-3. 100% | 24.9 MiB/s | 356.5 KiB | 00m00s [ 3/108] python3-matplotlib-0:3.9.1-2. 100% | 107.8 MiB/s | 4.5 MiB | 00m00s [ 4/108] python3-nose-0:1.3.7-59.fc41. 100% | 26.6 MiB/s | 327.2 KiB | 00m00s [ 5/108] gcc-0:14.2.1-1.fc42.i686 100% | 186.0 MiB/s | 36.8 MiB | 00m00s [ 6/108] gcc-c++-0:14.2.1-1.fc42.i686 100% | 60.9 MiB/s | 14.3 MiB | 00m00s [ 7/108] python3-numpy-1:1.26.4-8.fc41 100% | 86.9 MiB/s | 6.9 MiB | 00m00s [ 8/108] python3-urllib3-0:1.26.19-2.f 100% | 16.9 MiB/s | 259.0 KiB | 00m00s [ 9/108] python3-setuptools-0:69.2.0-8 100% | 58.0 MiB/s | 1.4 MiB | 00m00s [ 10/108] python3-scipy-0:1.11.3-15.fc4 100% | 152.0 MiB/s | 16.1 MiB | 00m00s [ 11/108] python3-0:3.13.0~rc1-3.fc42.i 100% | 2.4 MiB/s | 27.3 KiB | 00m00s [ 12/108] libstdc++-devel-0:14.2.1-1.fc 100% | 32.9 MiB/s | 2.6 MiB | 00m00s [ 13/108] cpp-0:14.2.1-1.fc42.i686 100% | 120.1 MiB/s | 12.0 MiB | 00m00s [ 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100% | 30.4 MiB/s | 2.9 MiB | 00m00s [ 40/108] libb2-0:0.98.1-12.fc41.i686 100% | 4.0 MiB/s | 28.8 KiB | 00m00s [ 41/108] mpdecimal-0:2.5.1-16.fc41.i68 100% | 17.9 MiB/s | 91.9 KiB | 00m00s [ 42/108] expat-0:2.6.3-1.fc42.i686 100% | 11.6 MiB/s | 118.5 KiB | 00m00s [ 43/108] pyproject-rpm-macros-0:1.14.0 100% | 6.9 MiB/s | 42.6 KiB | 00m00s [ 44/108] tzdata-0:2024a-9.fc41.noarch 100% | 52.6 MiB/s | 430.6 KiB | 00m00s [ 45/108] python-pip-wheel-0:24.2-1.fc4 100% | 100.1 MiB/s | 1.2 MiB | 00m00s [ 46/108] python-rpm-macros-0:3.13-3.fc 100% | 3.5 MiB/s | 17.7 KiB | 00m00s [ 47/108] python3-rpm-macros-0:3.13-3.f 100% | 3.0 MiB/s | 12.4 KiB | 00m00s [ 48/108] python3-rpm-generators-0:14-1 100% | 4.8 MiB/s | 29.3 KiB | 00m00s [ 49/108] python3-six-0:1.16.0-23.fc41. 100% | 8.1 MiB/s | 41.2 KiB | 00m00s [ 50/108] cairo-0:1.18.0-4.fc41.i686 100% | 67.2 MiB/s | 757.2 KiB | 00m00s [ 51/108] flex-0:2.6.4-18.fc41.i686 100% | 21.4 MiB/s | 284.9 KiB | 00m00s [ 52/108] kernel-headers-0:6.11.0-0.rc6 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100% | 30.5 MiB/s | 250.2 KiB | 00m00s [ 66/108] fonts-filesystem-1:2.0.5-17.f 100% | 2.1 MiB/s | 8.5 KiB | 00m00s [ 67/108] m4-0:1.4.19-10.fc41.i686 100% | 22.8 MiB/s | 303.4 KiB | 00m00s [ 68/108] fontconfig-0:2.15.0-8.fc41.i6 100% | 23.5 MiB/s | 265.0 KiB | 00m00s [ 69/108] libX11-0:1.8.10-2.fc42.i686 100% | 59.8 MiB/s | 673.8 KiB | 00m00s [ 70/108] libX11-common-0:1.8.10-2.fc42 100% | 28.3 MiB/s | 144.8 KiB | 00m00s [ 71/108] libXext-0:1.3.6-2.fc41.i686 100% | 4.6 MiB/s | 42.2 KiB | 00m00s [ 72/108] libXrender-0:0.9.11-7.fc41.i6 100% | 4.1 MiB/s | 29.3 KiB | 00m00s [ 73/108] libxcb-0:1.17.0-2.fc41.i686 100% | 30.8 MiB/s | 252.7 KiB | 00m00s [ 74/108] pixman-0:0.43.4-2.fc41.i686 100% | 37.1 MiB/s | 304.1 KiB | 00m00s [ 75/108] python3-brotli-0:1.1.0-5.fc41 100% | 33.4 MiB/s | 342.0 KiB | 00m00s [ 76/108] python3-fs-0:2.4.16-9.fc41.no 100% | 30.4 MiB/s | 280.1 KiB | 00m00s [ 77/108] python3-lxml-0:5.3.0-1.fc42.i 100% | 90.6 MiB/s | 1.4 MiB | 00m00s [ 78/108] tcl-1:8.6.14-2.fc41.i686 100% | 66.3 MiB/s | 1.1 MiB | 00m00s [ 79/108] tk-1:8.6.14-2.fc41.i686 100% | 90.2 MiB/s | 1.6 MiB | 00m00s [ 80/108] python3-charset-normalizer-0: 100% | 10.8 MiB/s | 99.3 KiB | 00m00s [ 81/108] lcms2-0:2.16-4.fc41.i686 100% | 21.4 MiB/s | 197.6 KiB | 00m00s [ 82/108] libimagequant-0:4.0.3-5.fc41. 100% | 31.5 MiB/s | 322.1 KiB | 00m00s [ 83/108] libjpeg-turbo-0:3.0.2-3.fc41. 100% | 31.4 MiB/s | 257.2 KiB | 00m00s [ 84/108] libraqm-0:0.8.0-8.fc41.i686 100% | 2.5 MiB/s | 20.3 KiB | 00m00s [ 85/108] libtiff-0:4.6.0-6.fc42.i686 100% | 22.6 MiB/s | 231.0 KiB | 00m00s [ 86/108] libwebp-0:1.4.0-4.fc41.i686 100% | 22.6 MiB/s | 300.6 KiB | 00m00s [ 87/108] openjpeg-0:2.5.2-4.fc42.i686 100% | 21.9 MiB/s | 202.2 KiB | 00m00s [ 88/108] python3-olefile-0:0.47-5.fc41 100% | 10.4 MiB/s | 74.6 KiB | 00m00s [ 89/108] python3-pillow-tk-0:10.4.0-2. 100% | 4.3 MiB/s | 30.7 KiB | 00m00s [ 90/108] libxslt-0:1.1.42-2.fc41.i686 100% | 19.7 MiB/s | 201.3 KiB | 00m00s [ 91/108] python3-appdirs-0:1.4.4-24.fc 100% | 2.9 MiB/s | 23.4 KiB | 00m00s [ 92/108] libXau-0:1.0.11-7.fc41.i686 100% | 4.5 MiB/s | 32.4 KiB | 00m00s [ 93/108] python3-matplotlib-data-fonts 100% | 101.1 MiB/s | 2.3 MiB | 00m00s [ 94/108] jbigkit-libs-0:2.1-30.fc41.i6 100% | 4.4 MiB/s | 53.7 KiB | 00m00s [ 95/108] liblerc-0:4.0.0-7.fc41.i686 100% | 19.4 MiB/s | 218.5 KiB | 00m00s [ 96/108] graphite2-0:1.3.14-16.fc41.i6 100% | 15.8 MiB/s | 97.2 KiB | 00m00s [ 97/108] fribidi-0:1.0.15-2.fc41.i686 100% | 8.3 MiB/s | 92.9 KiB | 00m00s [ 98/108] default-fonts-core-sans-0:4.1 100% | 3.5 MiB/s | 24.9 KiB | 00m00s [ 99/108] gnutls-0:3.8.7-2.fc42.i686 100% | 79.5 MiB/s | 1.1 MiB | 00m00s [100/108] xml-common-0:0.6.3-65.fc41.no 100% | 6.1 MiB/s | 31.2 KiB | 00m00s [101/108] glib2-0:2.82.0-1.fc42.i686 100% | 156.4 MiB/s | 3.1 MiB | 00m00s [102/108] abattis-cantarell-vf-fonts-0: 100% | 16.8 MiB/s | 120.2 KiB | 00m00s [103/108] google-noto-sans-vf-fonts-0:2 100% | 72.5 MiB/s | 593.9 KiB | 00m00s [104/108] google-noto-fonts-common-0:20 100% | 3.5 MiB/s | 17.8 KiB | 00m00s [105/108] libXft-0:2.3.8-7.fc41.i686 100% | 8.9 MiB/s | 73.3 KiB | 00m00s [106/108] openblas-0:0.3.26-5.fc41.i686 100% | 4.7 MiB/s | 38.7 KiB | 00m00s [107/108] nettle-0:3.10-3.fc41.i686 100% | 61.7 MiB/s | 442.4 KiB | 00m00s [108/108] openblas-openmp-0:0.3.26-5.fc 100% | 121.2 MiB/s | 4.0 MiB | 00m00s -------------------------------------------------------------------------------- [108/108] Total 100% | 207.9 MiB/s | 159.0 MiB | 00m01s Running transaction [ 1/110] Verify package files 100% | 250.0 B/s | 108.0 B | 00m00s [ 2/110] Prepare transaction 100% | 1.5 KiB/s | 108.0 B | 00m00s [ 3/110] Installing fonts-filesystem-1 100% | 0.0 B/s | 788.0 B | 00m00s [ 4/110] Installing python-rpm-macros- 100% | 0.0 B/s | 22.8 KiB | 00m00s [ 5/110] Installing python3-rpm-macros 100% | 0.0 B/s | 6.7 KiB | 00m00s [ 6/110] Installing python3-matplotlib 100% | 416.4 MiB/s | 7.9 MiB | 00m00s [ 7/110] Installing python3-matplotlib 100% | 148.2 MiB/s | 758.7 KiB | 00m00s [ 8/110] Installing tzdata-0:2024a-9.f 100% | 77.6 MiB/s | 1.9 MiB | 00m00s [ 9/110] Installing pyproject-rpm-macr 100% | 0.0 B/s | 107.7 KiB | 00m00s [ 10/110] Installing dejavu-sans-fonts- 100% | 459.1 MiB/s | 5.5 MiB | 00m00s [ 11/110] Installing abattis-cantarell- 100% | 189.9 MiB/s | 194.4 KiB | 00m00s [ 12/110] Installing openblas-0:0.3.26- 100% | 0.0 B/s | 97.8 KiB | 00m00s [ 13/110] Installing google-noto-fonts- 100% | 0.0 B/s | 18.3 KiB | 00m00s [ 14/110] Installing google-noto-sans-v 100% | 416.3 MiB/s | 1.2 MiB | 00m00s [ 15/110] Installing default-fonts-core 100% | 3.6 MiB/s | 18.2 KiB | 00m00s >>> Running pre-install scriptlet: xml-common-0:0.6.3-65.fc41.noarch >>> Stop pre-install scriptlet: xml-common-0:0.6.3-65.fc41.noarch [ 16/110] Installing xml-common-0:0.6.3 100% | 79.2 MiB/s | 81.1 KiB | 00m00s [ 17/110] Installing libX11-common-0:1. 100% | 169.6 MiB/s | 1.2 MiB | 00m00s [ 18/110] Installing annobin-docs-0:12. 100% | 96.5 MiB/s | 98.8 KiB | 00m00s [ 19/110] Installing kernel-headers-0:6 100% | 242.4 MiB/s | 6.5 MiB | 00m00s [ 20/110] Installing python-pip-wheel-0 100% | 413.9 MiB/s | 1.2 MiB | 00m00s [ 21/110] Installing glibc-headers-x86- 100% | 228.6 MiB/s | 2.3 MiB | 00m00s [ 22/110] Installing libxcrypt-devel-0: 100% | 31.8 MiB/s | 32.6 KiB | 00m00s [ 23/110] Installing glibc-devel-0:2.40 100% | 17.2 MiB/s | 35.2 KiB | 00m00s [ 24/110] Installing libstdc++-devel-0: 100% | 429.7 MiB/s | 15.0 MiB | 00m00s [ 25/110] Installing libmpc-0:1.3.1-6.f 100% | 165.6 MiB/s | 169.6 KiB | 00m00s [ 26/110] Installing libgfortran-0:14.2 100% | 490.5 MiB/s | 2.9 MiB | 00m00s [ 27/110] Installing libwebp-0:1.4.0-4. 100% | 283.7 MiB/s | 871.5 KiB | 00m00s [ 28/110] Installing libjpeg-turbo-0:3. 100% | 411.4 MiB/s | 842.6 KiB | 00m00s [ 29/110] Installing tcl-1:8.6.14-2.fc4 100% | 363.6 MiB/s | 4.4 MiB | 00m00s [ 30/110] Installing libpng-2:1.6.40-4. 100% | 252.4 MiB/s | 258.5 KiB | 00m00s [ 31/110] Installing openblas-openmp-0: 100% | 592.9 MiB/s | 22.5 MiB | 00m00s [ 32/110] Installing cpp-0:14.2.1-1.fc4 100% | 445.0 MiB/s | 35.6 MiB | 00m00s [ 33/110] Installing nettle-0:3.10-3.fc 100% | 387.8 MiB/s | 794.3 KiB | 00m00s [ 34/110] Installing gnutls-0:3.8.7-2.f 100% | 425.7 MiB/s | 3.4 MiB | 00m00s [ 35/110] Installing glib2-0:2.82.0-1.f 100% | 444.9 MiB/s | 15.1 MiB | 00m00s [ 36/110] Installing graphite2-0:1.3.14 100% | 192.0 MiB/s | 196.6 KiB | 00m00s [ 37/110] Installing harfbuzz-0:9.0.0-3 100% | 392.8 MiB/s | 2.7 MiB | 00m00s [ 38/110] Installing freetype-0:2.13.2- 100% | 280.0 MiB/s | 860.2 KiB | 00m00s [ 39/110] Installing fontconfig-0:2.15. 100% | 780.4 KiB/s | 798.3 KiB | 00m01s >>> Running post-install scriptlet: fontconfig-0:2.15.0-8.fc41.i686 >>> Stop post-install scriptlet: fontconfig-0:2.15.0-8.fc41.i686 [ 40/110] Installing fribidi-0:1.0.15-2 100% | 180.1 MiB/s | 368.9 KiB | 00m00s [ 41/110] Installing libraqm-0:0.8.0-8. 100% | 0.0 B/s | 25.0 KiB | 00m00s [ 42/110] Installing liblerc-0:4.0.0-7. 100% | 316.6 MiB/s | 648.4 KiB | 00m00s [ 43/110] Installing jbigkit-libs-0:2.1 100% | 111.5 MiB/s | 114.2 KiB | 00m00s [ 44/110] Installing libtiff-0:4.6.0-6. 100% | 315.9 MiB/s | 647.0 KiB | 00m00s [ 45/110] Installing libXau-0:1.0.11-7. 100% | 0.0 B/s | 63.7 KiB | 00m00s [ 46/110] Installing libxcb-0:1.17.0-2. 100% | 276.3 MiB/s | 1.1 MiB | 00m00s [ 47/110] Installing libX11-0:1.8.10-2. 100% | 447.4 MiB/s | 1.3 MiB | 00m00s [ 48/110] Installing libXrender-0:0.9.1 100% | 0.0 B/s | 54.6 KiB | 00m00s [ 49/110] Installing libXft-0:2.3.8-7.f 100% | 33.0 MiB/s | 169.1 KiB | 00m00s >>> Running pre-install scriptlet: tk-1:8.6.14-2.fc41.i686 >>> Stop pre-install scriptlet: tk-1:8.6.14-2.fc41.i686 [ 50/110] Installing tk-1:8.6.14-2.fc41 100% | 310.7 MiB/s | 3.7 MiB | 00m00s [ 51/110] Installing libXext-0:1.3.6-2. 100% | 0.0 B/s | 98.2 KiB | 00m00s [ 52/110] Installing libxslt-0:1.1.42-2 100% | 250.0 MiB/s | 512.0 KiB | 00m00s [ 53/110] Installing openjpeg-0:2.5.2-4 100% | 232.0 MiB/s | 475.0 KiB | 00m00s [ 54/110] Installing libimagequant-0:4. 100% | 331.9 MiB/s | 679.8 KiB | 00m00s [ 55/110] Installing lcms2-0:2.16-4.fc4 100% | 453.9 MiB/s | 464.8 KiB | 00m00s [ 56/110] Installing pixman-0:0.43.4-2. 100% | 366.6 MiB/s | 750.8 KiB | 00m00s [ 57/110] Installing cairo-0:1.18.0-4.f 100% | 367.5 MiB/s | 1.8 MiB | 00m00s [ 58/110] Installing m4-0:1.4.19-10.fc4 100% | 196.1 MiB/s | 602.5 KiB | 00m00s [ 59/110] Installing flex-0:2.6.4-18.fc 100% | 258.2 MiB/s | 793.3 KiB | 00m00s [ 60/110] Installing libquadmath-0:14.2 100% | 502.3 MiB/s | 514.4 KiB | 00m00s [ 61/110] Installing flexiblas-0:3.4.4- 100% | 0.0 B/s | 49.7 KiB | 00m00s [ 62/110] Installing flexiblas-openblas 100% | 0.0 B/s | 31.5 KiB | 00m00s [ 63/110] Installing flexiblas-netlib-0 100% | 442.2 MiB/s | 11.5 MiB | 00m00s [ 64/110] Installing make-1:4.4.1-8.fc4 100% | 363.3 MiB/s | 1.8 MiB | 00m00s [ 65/110] Installing libubsan-0:14.2.1- 100% | 530.7 MiB/s | 543.4 KiB | 00m00s [ 66/110] Installing libatomic-0:14.2.1 100% | 0.0 B/s | 28.3 KiB | 00m00s [ 67/110] Installing libasan-0:14.2.1-1 100% | 426.9 MiB/s | 1.7 MiB | 00m00s [ 68/110] Installing gcc-0:14.2.1-1.fc4 100% | 460.5 MiB/s | 101.8 MiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch [ 69/110] Installing mpdecimal-0:2.5.1- 100% | 200.4 MiB/s | 205.2 KiB | 00m00s [ 70/110] Installing libb2-0:0.98.1-12. 100% | 53.2 MiB/s | 54.5 KiB | 00m00s [ 71/110] Installing expat-0:2.6.3-1.fc 100% | 72.3 MiB/s | 296.1 KiB | 00m00s [ 72/110] Installing python3-libs-0:3.1 100% | 381.1 MiB/s | 40.4 MiB | 00m00s [ 73/110] Installing python3-0:3.13.0~r 100% | 0.0 B/s | 32.7 KiB | 00m00s [ 74/110] Installing python3-packaging- 100% | 105.8 MiB/s | 433.2 KiB | 00m00s [ 75/110] Installing python3-setuptools 100% | 305.4 MiB/s | 7.3 MiB | 00m00s [ 76/110] Installing python3-idna-0:3.8 100% | 294.3 MiB/s | 602.7 KiB | 00m00s [ 77/110] Installing python3-six-0:1.16 100% | 117.9 MiB/s | 120.7 KiB | 00m00s [ 78/110] Installing python3-dateutil-1 100% | 290.7 MiB/s | 892.9 KiB | 00m00s [ 79/110] Installing python3-urllib3-0: 100% | 250.7 MiB/s | 1.0 MiB | 00m00s [ 80/110] Installing python3-rpm-genera 100% | 81.0 MiB/s | 82.9 KiB | 00m00s [ 81/110] Installing python3-devel-0:3. 100% | 258.7 MiB/s | 1.8 MiB | 00m00s [ 82/110] Installing python3-platformdi 100% | 170.9 MiB/s | 175.0 KiB | 00m00s [ 83/110] Installing python3-cycler-0:0 100% | 0.0 B/s | 39.8 KiB | 00m00s [ 84/110] Installing python3-pyparsing- 100% | 329.6 MiB/s | 1.0 MiB | 00m00s [ 85/110] Installing python3-charset-no 100% | 158.5 MiB/s | 324.7 KiB | 00m00s [ 86/110] Installing python3-requests-0 100% | 243.2 MiB/s | 498.0 KiB | 00m00s [ 87/110] Installing python3-pooch-0:1. 100% | 312.7 MiB/s | 640.5 KiB | 00m00s [ 88/110] Installing python3-olefile-0: 100% | 335.6 MiB/s | 343.6 KiB | 00m00s [ 89/110] Installing python3-appdirs-0: 100% | 34.6 MiB/s | 70.9 KiB | 00m00s [ 90/110] Installing python3-numpy-1:1. 100% | 433.9 MiB/s | 36.9 MiB | 00m00s [ 91/110] Installing python3-pillow-0:1 100% | 311.4 MiB/s | 3.7 MiB | 00m00s [ 92/110] Installing python3-tkinter-0: 100% | 396.2 MiB/s | 2.0 MiB | 00m00s [ 93/110] Installing python3-numpy-f2py 100% | 226.6 MiB/s | 2.0 MiB | 00m00s [ 94/110] Installing python3-fs-0:2.4.1 100% | 191.7 MiB/s | 1.3 MiB | 00m00s [ 95/110] Installing python3-scipy-0:1. 100% | 435.7 MiB/s | 64.9 MiB | 00m00s [ 96/110] Installing python3-pillow-tk- 100% | 67.6 MiB/s | 69.2 KiB | 00m00s [ 97/110] Installing python3-contourpy- 100% | 200.2 MiB/s | 819.9 KiB | 00m00s [ 98/110] Installing python3-cairo-0:1. 100% | 239.3 MiB/s | 490.0 KiB | 00m00s [ 99/110] Installing python3-kiwisolver 100% | 159.9 MiB/s | 163.8 KiB | 00m00s [100/110] Installing python3-brotli-0:1 100% | 281.7 MiB/s | 865.3 KiB | 00m00s [101/110] Installing python3-lxml-0:5.3 100% | 346.6 MiB/s | 5.2 MiB | 00m00s [102/110] Installing python3-fonttools- 100% | 419.5 MiB/s | 18.5 MiB | 00m00s [103/110] Installing libqhull_r-1:8.0.2 100% | 503.5 MiB/s | 515.6 KiB | 00m00s [104/110] Installing python3-nose-0:1.3 100% | 255.5 MiB/s | 1.3 MiB | 00m00s [105/110] Installing python3-matplotlib 100% | 123.2 MiB/s | 252.3 KiB | 00m00s [106/110] Installing python3-matplotlib 100% | 387.8 MiB/s | 21.3 MiB | 00m00s [107/110] Installing python3-biopython- 100% | 415.3 MiB/s | 30.3 MiB | 00m00s [108/110] Installing gcc-c++-0:14.2.1-1 100% | 432.1 MiB/s | 38.9 MiB | 00m00s [109/110] Installing gcc-plugin-annobin 100% | 5.5 MiB/s | 61.4 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [110/110] Installing annobin-plugin-gcc 100% | 5.3 MiB/s | 986.3 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.i686 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.i686 >>> Running trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.i686 >>> Stop trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.i686 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.i686 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.i686 >>> Running trigger-install scriptlet: glib2-0:2.82.0-1.fc42.i686 >>> Stop trigger-install scriptlet: glib2-0:2.82.0-1.fc42.i686 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.i686 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.i686 Complete! Warning: skipped PGP checks for 108 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: build setup for ProDy-2.4.1-7.fc42.src.rpm Start: rpmbuild ProDy-2.4.1-7.fc42.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1725580800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.MTXhiV + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + test -d /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/rm -rf /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.eZYI1o + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd /builddir/build/BUILD/ProDy-2.4.1-build + rm -rf ProDy-2.4.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ProDy-2.4.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd ProDy-2.4.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/ProDy-change_requires.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find prody/proteins/ccealign -name '*.h' -exec chmod 0644 '{}' ';' + find prody/proteins/ccealign -name '*.cpp' -exec chmod 0644 '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.uiigRb + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-i686-cpython-313 creating build/lib.linux-i686-cpython-313/prody copying prody/__init__.py -> build/lib.linux-i686-cpython-313/prody creating build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/subset.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/selection.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/select.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/segment.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/residue.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/pointer.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/nbexclusion.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/improper.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/hierview.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/functions.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/flags.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/fields.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/donor.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/dihedral.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/crossterm.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/chain.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/bond.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/atommap.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/atomic.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/atomgroup.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/atom.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/angle.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/acceptor.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/__init__.py -> build/lib.linux-i686-cpython-313/prody/atomic creating build/lib.linux-i686-cpython-313/prody/database copying prody/database/uniprot.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/quartataweb.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/pfam.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/goa.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/dali.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/cath.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/__init__.py -> build/lib.linux-i686-cpython-313/prody/database creating build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/vmdfile.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/signature.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/sampling.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/rtb.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/plotting.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/perturb.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/pca.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/nmdfile.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/nma.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/modeset.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/mode.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/mechstiff.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/imanm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/heatmapper.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/gnm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/gamma.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/functions.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/exgnm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/exanm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/essa.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/entropy.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/editing.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/compare.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/clustenm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/bildfile.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/bbenm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/anm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/analysis.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/adaptive.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/__init__.py -> build/lib.linux-i686-cpython-313/prody/dynamics creating build/lib.linux-i686-cpython-313/prody/ensemble copying prody/ensemble/pdbensemble.py -> build/lib.linux-i686-cpython-313/prody/ensemble copying prody/ensemble/functions.py -> build/lib.linux-i686-cpython-313/prody/ensemble copying prody/ensemble/ensemble.py -> build/lib.linux-i686-cpython-313/prody/ensemble copying prody/ensemble/conformation.py -> build/lib.linux-i686-cpython-313/prody/ensemble copying prody/ensemble/__init__.py -> build/lib.linux-i686-cpython-313/prody/ensemble creating build/lib.linux-i686-cpython-313/prody/kdtree copying prody/kdtree/kdtree.py -> build/lib.linux-i686-cpython-313/prody/kdtree copying prody/kdtree/__init__.py -> build/lib.linux-i686-cpython-313/prody/kdtree creating build/lib.linux-i686-cpython-313/prody/measure copying prody/measure/transform.py -> build/lib.linux-i686-cpython-313/prody/measure copying prody/measure/measure.py -> build/lib.linux-i686-cpython-313/prody/measure copying prody/measure/contacts.py -> build/lib.linux-i686-cpython-313/prody/measure copying prody/measure/__init__.py -> build/lib.linux-i686-cpython-313/prody/measure creating build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/wwpdb.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/waterbridges.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/stride.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/starfile.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/pdbfile.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/pdbclusters.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/localpdb.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/header.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/functions.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/fixer.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/emdfile.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/dssp.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/compare.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/cifheader.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/ciffile.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/blastpdb.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/__init__.py -> build/lib.linux-i686-cpython-313/prody/proteins creating build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/sequence.py -> build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/plotting.py -> build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/msafile.py -> build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/msa.py -> build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/analysis.py -> build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/__init__.py -> build/lib.linux-i686-cpython-313/prody/sequence creating build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/trajfile.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/trajectory.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/trajbase.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/psffile.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/frame.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/dcdfile.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/__init__.py -> build/lib.linux-i686-cpython-313/prody/trajectory creating build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/straw.py -> build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/norm.py -> build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/hic.py -> build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/functions.py -> build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/cluster.py -> build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/__init__.py -> build/lib.linux-i686-cpython-313/prody/chromatin creating build/lib.linux-i686-cpython-313/prody/compounds copying prody/compounds/pdbligands.py -> build/lib.linux-i686-cpython-313/prody/compounds copying prody/compounds/functions.py -> build/lib.linux-i686-cpython-313/prody/compounds copying prody/compounds/ccd.py -> build/lib.linux-i686-cpython-313/prody/compounds copying prody/compounds/bird.py -> build/lib.linux-i686-cpython-313/prody/compounds copying prody/compounds/__init__.py -> build/lib.linux-i686-cpython-313/prody/compounds creating build/lib.linux-i686-cpython-313/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> build/lib.linux-i686-cpython-313/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> build/lib.linux-i686-cpython-313/prody/domain_decomposition creating build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/settings.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/seqtools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/pathtools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/misctools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/logger.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/legacy.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/laptools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/eigtools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/drawtools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/doctools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/checkers.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/catchall.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/__init__.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/TreeConstruction.py -> build/lib.linux-i686-cpython-313/prody/utilities creating build/lib.linux-i686-cpython-313/prody/apps copying prody/apps/apptools.py -> build/lib.linux-i686-cpython-313/prody/apps copying prody/apps/__init__.py -> build/lib.linux-i686-cpython-313/prody/apps creating build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_clustenm.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps creating build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps creating build/lib.linux-i686-cpython-313/prody/tests copying prody/tests/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests creating build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/apps creating build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_select.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic creating build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/datafiles creating build/lib.linux-i686-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> build/lib.linux-i686-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> build/lib.linux-i686-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> build/lib.linux-i686-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> build/lib.linux-i686-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/dynamics creating build/lib.linux-i686-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-i686-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> build/lib.linux-i686-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-i686-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-i686-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/ensemble creating build/lib.linux-i686-cpython-313/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-i686-cpython-313/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/kdtree creating build/lib.linux-i686-cpython-313/prody/tests/measure copying prody/tests/measure/test_transform.py -> build/lib.linux-i686-cpython-313/prody/tests/measure copying prody/tests/measure/test_measure.py -> build/lib.linux-i686-cpython-313/prody/tests/measure copying prody/tests/measure/test_contacts.py -> build/lib.linux-i686-cpython-313/prody/tests/measure copying prody/tests/measure/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/measure creating build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_header.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins creating build/lib.linux-i686-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> build/lib.linux-i686-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> build/lib.linux-i686-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> build/lib.linux-i686-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> build/lib.linux-i686-cpython-313/prody/tests/sequence copying prody/tests/sequence/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/sequence creating build/lib.linux-i686-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> build/lib.linux-i686-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-i686-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/trajectory creating build/lib.linux-i686-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-i686-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> build/lib.linux-i686-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> build/lib.linux-i686-cpython-313/prody/tests/utilities copying prody/tests/utilities/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/utilities creating build/lib.linux-i686-cpython-313/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> build/lib.linux-i686-cpython-313/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> build/lib.linux-i686-cpython-313/prody/utilities/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_hex.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_h36.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> build/lib.linux-i686-cpython-313/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build/temp.linux-i686-cpython-313 creating build/temp.linux-i686-cpython-313/prody creating build/temp.linux-i686-cpython-313/prody/dynamics gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/dynamics/rtbtools.c -o build/temp.linux-i686-cpython-313/prody/dynamics/rtbtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/dynamics/rtbtools.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/dynamics/rtbtools.cpython-313-i386-linux-gnu.so building 'prody.dynamics.smtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/dynamics/smtools.c -o build/temp.linux-i686-cpython-313/prody/dynamics/smtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/dynamics/smtools.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/dynamics/smtools.cpython-313-i386-linux-gnu.so building 'prody.sequence.msatools' extension creating build/temp.linux-i686-cpython-313/prody/sequence gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/msatools.c -o build/temp.linux-i686-cpython-313/prody/sequence/msatools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/sequence/msatools.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/sequence/msatools.cpython-313-i386-linux-gnu.so building 'prody.sequence.msaio' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/msaio.c -o build/temp.linux-i686-cpython-313/prody/sequence/msaio.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/sequence/msaio.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/sequence/msaio.cpython-313-i386-linux-gnu.so building 'prody.sequence.seqtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/seqtools.c -o build/temp.linux-i686-cpython-313/prody/sequence/seqtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/sequence/seqtools.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/sequence/seqtools.cpython-313-i386-linux-gnu.so building 'prody.kdtree._CKDTree' extension creating build/temp.linux-i686-cpython-313/prody/kdtree gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/kdtree/KDTree.c -o build/temp.linux-i686-cpython-313/prody/kdtree/KDTree.o gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-i686-cpython-313/prody/kdtree/KDTreemodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/kdtree/KDTree.o build/temp.linux-i686-cpython-313/prody/kdtree/KDTreemodule.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/kdtree/_CKDTree.cpython-313-i386-linux-gnu.so building 'prody.proteins.ccealign' extension creating build/temp.linux-i686-cpython-313/prody/proteins creating build/temp.linux-i686-cpython-313/prody/proteins/ccealign gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Iprody/utilities/tnt -I/usr/include/python3.13 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-i686-cpython-313/prody/proteins/ccealign/ccealignmodule.o g++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/proteins/ccealign.cpython-313-i386-linux-gnu.so + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.QNGgvP + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + '[' /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build + mkdir /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT --prefix /usr running install /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13 creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-i686-cpython-313/prody/tests/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-i686-cpython-313/prody/tests/utilities/test_checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-i686-cpython-313/prody/tests/utilities/test_misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-i686-cpython-313/prody/tests/utilities/test_pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-i686-cpython-313/prody/tests/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-i686-cpython-313/prody/tests/trajectory/test_dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-i686-cpython-313/prody/tests/trajectory/test_frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-313/prody/tests/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-313/prody/tests/sequence/test_analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-313/prody/tests/sequence/test_msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-313/prody/tests/sequence/test_msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-313/prody/tests/sequence/test_sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure copying build/lib.linux-i686-cpython-313/prody/tests/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure copying build/lib.linux-i686-cpython-313/prody/tests/measure/test_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure copying build/lib.linux-i686-cpython-313/prody/tests/measure/test_measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure copying build/lib.linux-i686-cpython-313/prody/tests/measure/test_transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/kdtree copying build/lib.linux-i686-cpython-313/prody/tests/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/kdtree copying build/lib.linux-i686-cpython-313/prody/tests/kdtree/test_kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/kdtree creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-313/prody/tests/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-313/prody/tests/ensemble/test_conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-313/prody/tests/ensemble/test_ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-313/prody/tests/ensemble/test_functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-313/prody/tests/ensemble/test_pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-313/prody/tests/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-313/prody/tests/dynamics/test_editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-313/prody/tests/dynamics/test_enms.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-313/prody/tests/dynamics/test_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-313/prody/tests/dynamics/test_signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/mmcif_6yfy.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/mmcif_6zu5.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_Cys_knot.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_Cys_knot.slx -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_Cys_knot.sth -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/xmlSTI.xml -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/dcd2k39_truncated.dcd -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/anm1ubi_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/exanm2nwl_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pca2k39_cov.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/rtb2gb1_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/rtb2gb1_project.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/anm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/anm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/commute1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/exanm2nwl_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/exanm2nwl_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/gnm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/gnm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/hit1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_Cys_knot_di.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pca2k39_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pca2k39_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1ejg.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1r19_dssp.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1ubi.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1ubi_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb2k39_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb2k39_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb2nwl-opm.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb3hsy.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb3mht.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb3o21.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb3p3w.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb4v8r_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb4v8r_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdbRTER.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_fragment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/test_prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/test_prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/test_prody_examples.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/test_prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/test_prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_coevol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_conserv.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_filter.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_merge.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_occupancy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_rankorder.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_refine.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_search.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/nmaoptions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_align.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_biomol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_blast.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_eda.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_energy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps copying build/lib.linux-i686-cpython-313/prody/apps/apptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-i686-cpython-313/prody/utilities/datafiles/mod_res_map.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-i686-cpython-313/prody/utilities/datafiles/saxs_water.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-i686-cpython-313/prody/utilities/TreeConstruction.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/catchall.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/doctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/drawtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/eigtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/laptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/legacy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/logger.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/seqtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/settings.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/domain_decomposition copying build/lib.linux-i686-cpython-313/prody/domain_decomposition/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/domain_decomposition copying build/lib.linux-i686-cpython-313/prody/domain_decomposition/spectrus.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/domain_decomposition creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds copying build/lib.linux-i686-cpython-313/prody/compounds/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds copying build/lib.linux-i686-cpython-313/prody/compounds/bird.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds copying build/lib.linux-i686-cpython-313/prody/compounds/ccd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds copying build/lib.linux-i686-cpython-313/prody/compounds/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds copying build/lib.linux-i686-cpython-313/prody/compounds/pdbligands.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/cluster.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/hic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/norm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/straw.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/psffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/trajbase.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/trajectory.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/trajfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/seqtools.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/msaio.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/msatools.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/ccealign.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/blastpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/cifheader.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/emdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/fixer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/pdbclusters.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/starfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/stride.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/waterbridges.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure copying build/lib.linux-i686-cpython-313/prody/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure copying build/lib.linux-i686-cpython-313/prody/measure/contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure copying build/lib.linux-i686-cpython-313/prody/measure/measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure copying build/lib.linux-i686-cpython-313/prody/measure/transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree copying build/lib.linux-i686-cpython-313/prody/kdtree/_CKDTree.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree copying build/lib.linux-i686-cpython-313/prody/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree copying build/lib.linux-i686-cpython-313/prody/kdtree/kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-313/prody/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-313/prody/ensemble/conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-313/prody/ensemble/ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-313/prody/ensemble/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-313/prody/ensemble/pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/smtools.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/rtbtools.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/adaptive.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/bbenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/bildfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/entropy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/essa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/exanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/exgnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/gamma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/heatmapper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/imanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/mechstiff.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/mode.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/modeset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/nma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/nmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/perturb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/rtb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/sampling.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/vmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/cath.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/dali.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/goa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/pfam.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/quartataweb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/uniprot.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/acceptor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/angle.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/atom.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/atomgroup.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/bond.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/chain.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/crossterm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/dihedral.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/donor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/fields.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/flags.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/improper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/nbexclusion.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/pointer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/residue.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/segment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/selection.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_header.py to test_header.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure/test_measure.py to test_measure.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure/test_transform.py to test_transform.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/kdtree/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_select.py to test_select.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_clustenm.py to prody_clustenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/apptools.py to apptools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/catchall.py to catchall.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/checkers.py to checkers.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/doctools.py to doctools.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/drawtools.py to drawtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/eigtools.py to eigtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/laptools.py to laptools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/legacy.py to legacy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/logger.py to logger.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/misctools.py to misctools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/pathtools.py to pathtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/seqtools.py to seqtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/settings.py to settings.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/domain_decomposition/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds/bird.py to bird.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds/ccd.py to ccd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds/pdbligands.py to pdbligands.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/cluster.py to cluster.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/hic.py to hic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/norm.py to norm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/straw.py to straw.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/frame.py to frame.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/psffile.py to psffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/trajbase.py to trajbase.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/trajectory.py to trajectory.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/trajfile.py to trajfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/analysis.py to analysis.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/msa.py to msa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/msafile.py to msafile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/plotting.py to plotting.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/sequence.py to sequence.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/blastpdb.py to blastpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/ciffile.py to ciffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/cifheader.py to cifheader.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/compare.py to compare.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/dssp.py to dssp.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/emdfile.py to emdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/fixer.py to fixer.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/header.py to header.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/localpdb.py to localpdb.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/pdbfile.py to pdbfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/starfile.py to starfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/stride.py to stride.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/waterbridges.py to waterbridges.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/wwpdb.py to wwpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure/contacts.py to contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure/measure.py to measure.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure/transform.py to transform.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree/kdtree.py to kdtree.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble/conformation.py to conformation.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble/ensemble.py to ensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/adaptive.py to adaptive.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/analysis.py to analysis.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/anm.py to anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/bbenm.py to bbenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/bildfile.py to bildfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/clustenm.py to clustenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/compare.py to compare.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/editing.py to editing.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/entropy.py to entropy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/essa.py to essa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/exanm.py to exanm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/exgnm.py to exgnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/gamma.py to gamma.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/gnm.py to gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/imanm.py to imanm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/mode.py to mode.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/modeset.py to modeset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/nma.py to nma.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/pca.py to pca.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/perturb.py to perturb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/plotting.py to plotting.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/rtb.py to rtb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/sampling.py to sampling.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/signature.py to signature.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/cath.py to cath.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/dali.py to dali.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/goa.py to goa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/pfam.py to pfam.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/quartataweb.py to quartataweb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/uniprot.py to uniprot.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/acceptor.py to acceptor.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/angle.py to angle.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/atom.py to atom.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/atomgroup.py to atomgroup.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/atomic.py to atomic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/atommap.py to atommap.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/bond.py to bond.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/chain.py to chain.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/crossterm.py to crossterm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/dihedral.py to dihedral.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/donor.py to donor.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/fields.py to fields.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/flags.py to flags.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/hierview.py to hierview.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/improper.py to improper.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/pointer.py to pointer.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/residue.py to residue.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/segment.py to segment.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/select.py to select.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/selection.py to selection.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/subset.py to subset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/__init__.py to __init__.cpython-313.pyc writing byte-compilation script '/tmp/tmp6uwth21l.py' /usr/bin/python3 /tmp/tmp6uwth21l.py /usr/lib/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' removing /tmp/tmp6uwth21l.py running install_egg_info running egg_info creating ProDy.egg-info writing ProDy.egg-info/PKG-INFO writing dependency_links to ProDy.egg-info/dependency_links.txt writing entry points to ProDy.egg-info/entry_points.txt writing requirements to ProDy.egg-info/requires.txt writing top-level names to ProDy.egg-info/top_level.txt writing manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'prody/*/*/*.c' warning: no files found matching 'prody/*/*.cpp' warning: no files found matching 'prody/utilities/datafiles/*.txt' adding license file 'LICENSE.rst' writing manifest file 'ProDy.egg-info/SOURCES.txt' Copying ProDy.egg-info to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/ProDy-2.4.1-py3.13.egg-info running install_scripts Installing evol script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin Installing prody script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + rm -rfv /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/__pycache__ + mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + rm -f /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody + cd scripts + cp -pr ./prody ./python3.13-prody + cp -pr ./evol ./python3.13-evol + sed -i '1s=^#!/usr/bin/\(python\|env python\)[0-9.]*=#!/usr/bin/python3=' ./prody ./evol ./python3.13-prody ./python3.13-evol + for i in prody-3.13 + touch -r ./python3.13-prody prody-3.13 + install -p prody-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + ln -sf /usr/bin/python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody-3.13 + for i in evol-3.13 + touch -r ./python3.13-evol evol-3.13 + install -p evol-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + ln -sf /usr/bin/python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol-3.13 + cd .. + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.4.1-7.fc42 --unique-debug-suffix -2.4.1-7.fc42.i386 --unique-debug-src-base ProDy-2.4.1-7.fc42.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1 find-debuginfo: starting Extracting debug info from 7 files DWARF-compressing 7 files sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/ProDy-2.4.1-7.fc42.i386 464 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/debug/usr/lib/python3.13 using python3.13 Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13 using python3.13 /usr/lib/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/atomic.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/select.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/subset.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/selection.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/atomgroup.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/segment.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/flags.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/nbexclusion.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/residue.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/improper.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/pointer.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/hierview.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/crossterm.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/functions.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/fields.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/fields.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/chain.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/donor.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/bond.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/dihedral.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/acceptor.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/atommap.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/atom.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/angle.cpython-313.opt-1.pyc: rewriting with normalized contents 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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities/__pycache__/test_pathtools.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities/__pycache__/test_misctools.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities/__pycache__/test_checkers.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence/__pycache__/test_analysis.cpython-313.opt-1.pyc: rewriting with normalized contents Scanned 88 directories and 714 files, processed 233 inodes, 233 modified (52 replaced + 181 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS/rpm-debuginfo.specpart Processing files: python3-ProDy-2.4.1-7.fc42.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.p9Osvg + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd ProDy-2.4.1 + DOCDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/README.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Uz2hia + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd ProDy-2.4.1 + LICENSEDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/LICENSE.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol warning: absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody Provides: ProDy = 0:2.4.1-7.fc42 python-ProDy = 2.4.1-7.fc42 python3-ProDy = 2.4.1-7.fc42 python3-ProDy(x86-32) = 2.4.1-7.fc42 python3.13-ProDy = 2.4.1-7.fc42 python3.13dist(prody) = 2.4.1 python3dist(prody) = 2.4.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.13 python3.13dist(biopython) python3.13dist(numpy) >= 1.10 python3.13dist(pyparsing) python3.13dist(scipy) python3.13dist(setuptools) Obsoletes: python-ProDy < 2.4.1-7.fc42 Processing files: ProDy-debugsource-2.4.1-7.fc42.i686 Provides: ProDy-debugsource = 2.4.1-7.fc42 ProDy-debugsource(x86-32) = 2.4.1-7.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-ProDy-debuginfo-2.4.1-7.fc42.i686 Provides: debuginfo(build-id) = 0dda2ccb3c43200cae52b2bfe949dee36494f739 debuginfo(build-id) = 1d9d8d031b0b088bb4d1af339798ce5384a2e1ba debuginfo(build-id) = 8d77b4b0785ce6bafe3853e0205615b8ba2077ca debuginfo(build-id) = 9b3f5147093c1ca0b2edb0f57da0867d72d4e95f debuginfo(build-id) = baafcab32d6090480146a49a9d22b3950bae73f0 debuginfo(build-id) = e52bd0e8ec316be1538ecbef2bf4be647a68f1c7 debuginfo(build-id) = e59ec605fa1357ea893bac087b42a435d82ba1e6 python-ProDy-debuginfo = 2.4.1-7.fc42 python3-ProDy-debuginfo = 2.4.1-7.fc42 python3-ProDy-debuginfo(x86-32) = 2.4.1-7.fc42 python3.13-ProDy-debuginfo = 2.4.1-7.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: ProDy-debugsource(x86-32) = 2.4.1-7.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT Wrote: /builddir/build/RPMS/ProDy-debugsource-2.4.1-7.fc42.i686.rpm Wrote: /builddir/build/RPMS/python3-ProDy-debuginfo-2.4.1-7.fc42.i686.rpm Wrote: /builddir/build/RPMS/python3-ProDy-2.4.1-7.fc42.i686.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.ckmrsN + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + test -d /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build + rm -rf /builddir/build/BUILD/ProDy-2.4.1-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody Finish: rpmbuild ProDy-2.4.1-7.fc42.src.rpm Finish: build phase for ProDy-2.4.1-7.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-i686-1725633659.778062/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-7.fc42.src.rpm) Config(child) 1 minutes 25 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "ProDy-debugsource", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "i686" }, { "name": "python3-ProDy-debuginfo", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "i686" }, { "name": "ProDy", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "src" }, { "name": "python3-ProDy", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "i686" } ] } RPMResults finished