Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c299' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6118748-fedora-38-ppc64le --chroot fedora-38-ppc64le Version: 0.68 PID: 10269 Logging PID: 10270 Task: {'appstream': False, 'background': True, 'build_id': 6118748, 'buildroot_pkgs': [], 'chroot': 'fedora-38-ppc64le', 'enable_net': False, 'fedora_review': False, 'git_hash': '98000ca21d03cb25d7d6eb9a77e1673d17a0b591', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.10.0/smoldyn', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'smoldyn', 'package_version': '2.67.3-5', 'project_dirname': 'scipy-1.10.0', 'project_name': 'scipy-1.10.0', 'project_owner': 'psimovec', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/scipy-1.10.0/fedora-38-ppc64le/', 'id': 'copr_base', 'name': 'Copr repository'}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/scipy-1.10.0--https://src.fedoraproject.org/user/churchyard', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/churchyard', 'tags': [], 'task_id': '6118748-fedora-38-ppc64le', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.10.0/smoldyn /var/lib/copr-rpmbuild/workspace/workdir-h_k0qzla/smoldyn --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.10.0/smoldyn', '/var/lib/copr-rpmbuild/workspace/workdir-h_k0qzla/smoldyn', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-h_k0qzla/smoldyn'... Running: git checkout 98000ca21d03cb25d7d6eb9a77e1673d17a0b591 -- cmd: ['git', 'checkout', '98000ca21d03cb25d7d6eb9a77e1673d17a0b591', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-h_k0qzla/smoldyn rc: 0 stdout: stderr: Note: switching to '98000ca21d03cb25d7d6eb9a77e1673d17a0b591'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 98000ca automatic import of smoldyn Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-h_k0qzla/smoldyn rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Smoldyn-2.67.3.tar.gz INFO: Calling: curl -H Pragma: -o Smoldyn-2.67.3.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/scipy-1.10.0/smoldyn/Smoldyn-2.67.3.tar.gz/md5/061227e5683e484b0dd465d378e5390b/Smoldyn-2.67.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated 100 92.0M 100 92.0M 0 0 3380k 0 0:00:27 0:00:27 --:--:-- 9299k INFO: Reading stdout from command: md5sum Smoldyn-2.67.3.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-h_k0qzla/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-h_k0qzla/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1687878414.574464 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-h_k0qzla/smoldyn/smoldyn.spec) Config(fedora-38-ppc64le) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-ppc64le-bootstrap-1687878414.574464/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 7.4 MB/s | 1.7 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 17 MB/s | 66 MB 00:03 fedora 16 MB/s | 77 MB 00:04 updates 6.9 MB/s | 23 MB 00:03 Last metadata expiration check: 0:00:01 ago on Tue Jun 27 15:07:58 2023. Dependencies resolved. ========================================================================================================================================= Package Arch Version Repository Size ========================================================================================================================================= Installing: dnf-plugins-core noarch 4.4.1-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38 k python3-dnf noarch 4.16.1-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 564 k Installing dependencies: alternatives ppc64le 1.24-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k audit-libs ppc64le 3.1.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 132 k basesystem noarch 11-17.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.0 k bash ppc64le 5.2.15-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 M bzip2-libs ppc64le 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 777 k systemd-libs ppc64le 253.5-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 692 k tpm2-tss ppc64le 4.0.1-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 628 k tzdata noarch 2023c-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 433 k xz-libs ppc64le 5.4.3-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121 k zchunk-libs ppc64le 1.3.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 57 k zlib ppc64le 1.2.13-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100 k Transaction Summary ========================================================================================================================================= Install 141 Packages Total download size: 61 M Installed size: 291 M Downloading Packages: (1/141): alternatives-1.24-1.fc39.ppc64le.rpm 359 kB/s | 41 kB 00:00 (2/141): basesystem-11-17.fc39.noarch.rpm 61 kB/s | 7.0 kB 00:00 (3/141): bzip2-libs-1.0.8-13.fc38.ppc64le.rpm 2.1 MB/s | 48 kB 00:00 (4/141): audit-libs-3.1.1-1.fc39.ppc64le.rpm 871 kB/s | 132 kB 00:00 (5/141): ca-certificates-2023.2.60-2.fc38.noarc 12 MB/s | 845 kB 00:00 (6/141): coreutils-9.3-1.fc39.ppc64le.rpm 16 MB/s | 1.4 MB 00:00 (7/141): crypto-policies-20230614-1.git5f3458e. 1.4 MB/s | 65 kB 00:00 (8/141): coreutils-common-9.3-1.fc39.ppc64le.rp 20 MB/s | 2.1 MB 00:00 (9/141): bash-5.2.15-3.fc38.ppc64le.rpm 8.2 MB/s | 1.9 MB 00:00 (10/141): curl-8.1.2-1.fc39.ppc64le.rpm 5.6 MB/s | 348 kB 00:00 (11/141): dbus-libs-1.14.8-1.fc39.ppc64le.rpm 7.5 MB/s | 177 kB 00:00 (12/141): cyrus-sasl-lib-2.1.28-10.fc39.ppc64le 15 MB/s | 876 kB 00:00 (13/141): dnf-data-4.16.1-2.fc39.noarch.rpm 1.2 MB/s | 38 kB 00:00 (14/141): dnf-plugins-core-4.4.1-3.fc39.noarch. 1.7 MB/s | 38 kB 00:00 (15/141): elfutils-default-yama-scope-0.189-2.f 643 kB/s | 15 kB 00:00 (16/141): elfutils-libelf-0.189-2.fc39.ppc64le. 8.2 MB/s | 205 kB 00:00 (17/141): fedora-gpg-keys-39-0.1.noarch.rpm 4.7 MB/s | 116 kB 00:00 (18/141): expat-2.5.0-2.fc38.ppc64le.rpm 4.2 MB/s | 117 kB 00:00 (19/141): elfutils-libs-0.189-2.fc39.ppc64le.rp 6.7 MB/s | 295 kB 00:00 (20/141): fedora-release-common-39-0.14.noarch. 615 kB/s | 17 kB 00:00 (21/141): fedora-release-39-0.14.noarch.rpm 208 kB/s | 6.6 kB 00:00 (22/141): fedora-release-identity-basic-39-0.14 298 kB/s | 7.4 kB 00:00 (23/141): fedora-repos-39-0.1.noarch.rpm 428 kB/s | 9.4 kB 00:00 (24/141): fedora-repos-rawhide-39-0.1.noarch.rp 296 kB/s | 9.0 kB 00:00 (25/141): file-libs-5.44-3.fc39.ppc64le.rpm 19 MB/s | 743 kB 00:00 (26/141): filesystem-3.18-4.fc39.ppc64le.rpm 18 MB/s | 1.1 MB 00:00 (27/141): fmt-9.1.0-2.fc38.ppc64le.rpm 3.4 MB/s | 139 kB 00:00 (28/141): findutils-4.9.0-4.fc39.ppc64le.rpm 7.9 MB/s | 530 kB 00:00 (29/141): gdbm-libs-1.23-3.fc38.ppc64le.rpm 2.3 MB/s | 62 kB 00:00 (30/141): gawk-5.2.2-1.fc39.ppc64le.rpm 11 MB/s | 1.1 MB 00:00 (31/141): glib2-2.76.3-1.fc39.ppc64le.rpm 24 MB/s | 2.9 MB 00:00 (32/141): glibc-common-2.37.9000-14.fc39.ppc64l 5.5 MB/s | 348 kB 00:00 (33/141): glibc-minimal-langpack-2.37.9000-14.f 1.8 MB/s | 59 kB 00:00 (34/141): gmp-6.2.1-4.fc38.ppc64le.rpm 11 MB/s | 304 kB 00:00 (35/141): glibc-2.37.9000-14.fc39.ppc64le.rpm 13 MB/s | 2.2 MB 00:00 (36/141): gnupg2-2.4.2-2.fc39.ppc64le.rpm 30 MB/s | 2.8 MB 00:00 (37/141): gpgme-1.20.0-3.fc39.ppc64le.rpm 3.8 MB/s | 233 kB 00:00 (38/141): gnutls-3.8.0-6.fc39.ppc64le.rpm 11 MB/s | 1.1 MB 00:00 (39/141): ima-evm-utils-1.5-1.fc39.ppc64le.rpm 2.1 MB/s | 67 kB 00:00 (40/141): grep-3.11-1.fc39.ppc64le.rpm 7.9 MB/s | 297 kB 00:00 (41/141): json-c-0.16-4.fc38.ppc64le.rpm 1.7 MB/s | 46 kB 00:00 (42/141): keyutils-libs-1.6.1-6.fc38.ppc64le.rp 1.4 MB/s | 32 kB 00:00 (43/141): libacl-2.3.1-7.fc39.ppc64le.rpm 1.2 MB/s | 26 kB 00:00 (44/141): krb5-libs-1.21-1.fc39.ppc64le.rpm 18 MB/s | 846 kB 00:00 (45/141): libarchive-3.6.1-5.fc39.ppc64le.rpm 13 MB/s | 464 kB 00:00 (46/141): libassuan-2.5.6-1.fc39.ppc64le.rpm 2.8 MB/s | 71 kB 00:00 (47/141): libattr-2.5.1-7.fc39.ppc64le.rpm 915 kB/s | 19 kB 00:00 (48/141): libb2-0.98.1-8.fc38.ppc64le.rpm 1.2 MB/s | 25 kB 00:00 (49/141): libblkid-2.39-4.fc39.ppc64le.rpm 4.0 MB/s | 133 kB 00:00 (50/141): libbrotli-1.0.9-11.fc38.ppc64le.rpm 13 MB/s | 344 kB 00:00 (51/141): libcap-2.48-6.fc38.ppc64le.rpm 2.1 MB/s | 72 kB 00:00 (52/141): libcap-ng-0.8.3-5.fc38.ppc64le.rpm 1.5 MB/s | 33 kB 00:00 (53/141): libcom_err-1.47.0-1.fc39.ppc64le.rpm 1.0 MB/s | 26 kB 00:00 (54/141): libcurl-8.1.2-1.fc39.ppc64le.rpm 10 MB/s | 357 kB 00:00 (55/141): libcomps-0.1.19-1.fc39.ppc64le.rpm 2.2 MB/s | 84 kB 00:00 (56/141): libdnf-0.70.1-3.fc39.ppc64le.rpm 18 MB/s | 661 kB 00:00 (57/141): libeconf-0.4.0-5.fc38.ppc64le.rpm 1.1 MB/s | 30 kB 00:00 (58/141): libevent-2.1.12-8.fc38.ppc64le.rpm 7.7 MB/s | 275 kB 00:00 (59/141): libdnf5-5.0.14-1.fc39.ppc64le.rpm 14 MB/s | 874 kB 00:00 (60/141): libffi-3.4.4-2.fc38.ppc64le.rpm 1.0 MB/s | 38 kB 00:00 (61/141): libfsverity-1.4-9.fc38.ppc64le.rpm 671 kB/s | 20 kB 00:00 (62/141): libgcc-13.1.1-4.fc39.ppc64le.rpm 3.7 MB/s | 102 kB 00:00 (63/141): libgomp-13.1.1-4.fc39.ppc64le.rpm 8.4 MB/s | 330 kB 00:00 (64/141): libgcrypt-1.10.2-1.fc39.ppc64le.rpm 12 MB/s | 600 kB 00:00 (65/141): libgpg-error-1.47-1.fc39.ppc64le.rpm 6.0 MB/s | 235 kB 00:00 (66/141): libidn2-2.3.4-2.fc38.ppc64le.rpm 4.3 MB/s | 157 kB 00:00 (67/141): libksba-1.6.4-1.fc39.ppc64le.rpm 5.1 MB/s | 174 kB 00:00 (68/141): libmodulemd-2.15.0-3.fc39.ppc64le.rpm 5.1 MB/s | 232 kB 00:00 (69/141): libmount-2.39-4.fc39.ppc64le.rpm 4.8 MB/s | 176 kB 00:00 (70/141): libnghttp2-1.54.0-1.fc39.ppc64le.rpm 2.4 MB/s | 85 kB 00:00 (71/141): libnsl2-2.0.0-5.fc38.ppc64le.rpm 1.1 MB/s | 32 kB 00:00 (72/141): libpsl-0.21.2-3.fc39.ppc64le.rpm 2.3 MB/s | 64 kB 00:00 (73/141): librepo-1.15.1-2.fc38.ppc64le.rpm 3.7 MB/s | 103 kB 00:00 (74/141): libreport-filesystem-2.17.10-1.fc39.n 611 kB/s | 14 kB 00:00 (75/141): libselinux-3.5-1.fc39.ppc64le.rpm 4.2 MB/s | 100 kB 00:00 (76/141): libsemanage-3.5-2.fc39.ppc64le.rpm 4.7 MB/s | 131 kB 00:00 (77/141): libsepol-3.5-1.fc39.ppc64le.rpm 13 MB/s | 356 kB 00:00 (78/141): libsigsegv-2.14-4.fc38.ppc64le.rpm 1.0 MB/s | 28 kB 00:00 (79/141): libsmartcols-2.39-4.fc39.ppc64le.rpm 2.2 MB/s | 74 kB 00:00 (80/141): libsolv-0.7.24-4.fc39.ppc64le.rpm 14 MB/s | 482 kB 00:00 (81/141): libssh-0.10.5-1.fc39.ppc64le.rpm 8.6 MB/s | 238 kB 00:00 (82/141): libssh-config-0.10.5-1.fc39.noarch.rp 373 kB/s | 9.0 kB 00:00 (83/141): libtasn1-4.19.0-2.fc38.ppc64le.rpm 3.1 MB/s | 80 kB 00:00 (84/141): libtirpc-1.3.3-1.rc1.fc39.ppc64le.rpm 4.4 MB/s | 108 kB 00:00 (85/141): libstdc++-13.1.1-4.fc39.ppc64le.rpm 17 MB/s | 996 kB 00:00 (86/141): libunistring1.0-1.0-1.fc38.ppc64le.rp 16 MB/s | 575 kB 00:00 (87/141): libunistring-1.1-3.fc38.ppc64le.rpm 12 MB/s | 578 kB 00:00 (88/141): libuuid-2.39-4.fc39.ppc64le.rpm 1.1 MB/s | 30 kB 00:00 (89/141): libverto-0.3.2-5.fc38.ppc64le.rpm 839 kB/s | 22 kB 00:00 (90/141): libxcrypt-4.4.35-1.fc39.ppc64le.rpm 4.9 MB/s | 132 kB 00:00 (91/141): libxml2-2.10.4-1.fc39.ppc64le.rpm 21 MB/s | 780 kB 00:00 (92/141): libyaml-0.2.5-9.fc38.ppc64le.rpm 2.3 MB/s | 69 kB 00:00 (93/141): libzstd-1.5.5-1.fc39.ppc64le.rpm 11 MB/s | 336 kB 00:00 (94/141): lua-libs-5.4.4-9.fc39.ppc64le.rpm 5.9 MB/s | 149 kB 00:00 (95/141): lz4-libs-1.9.4-3.fc39.ppc64le.rpm 3.6 MB/s | 85 kB 00:00 (96/141): mpdecimal-2.5.1-6.fc38.ppc64le.rpm 4.4 MB/s | 104 kB 00:00 (97/141): ncurses-base-6.4-4.20230520.fc39.noar 2.8 MB/s | 62 kB 00:00 (98/141): ncurses-libs-6.4-4.20230520.fc39.ppc6 14 MB/s | 378 kB 00:00 (99/141): mpfr-4.1.1-3.fc38.ppc64le.rpm 12 MB/s | 609 kB 00:00 (100/141): nettle-3.9.1-1.fc39.ppc64le.rpm 14 MB/s | 460 kB 00:00 (101/141): npth-1.6-13.fc39.ppc64le.rpm 903 kB/s | 24 kB 00:00 (102/141): p11-kit-0.24.1-6.fc38.ppc64le.rpm 13 MB/s | 353 kB 00:00 (103/141): openldap-2.6.4-2.fc39.ppc64le.rpm 6.5 MB/s | 287 kB 00:00 (104/141): p11-kit-trust-0.24.1-6.fc38.ppc64le. 4.9 MB/s | 148 kB 00:00 (105/141): popt-1.19-2.fc38.ppc64le.rpm 2.9 MB/s | 64 kB 00:00 (106/141): pcre2-syntax-10.42-1.fc38.1.noarch.r 5.2 MB/s | 144 kB 00:00 (107/141): pcre2-10.42-1.fc38.1.ppc64le.rpm 7.6 MB/s | 242 kB 00:00 (108/141): publicsuffix-list-dafsa-20230614-1.f 2.0 MB/s | 57 kB 00:00 (109/141): python-setuptools-wheel-67.7.2-2.fc3 18 MB/s | 661 kB 00:00 (110/141): python-pip-wheel-23.1.2-1.fc39.noarc 25 MB/s | 1.4 MB 00:00 (111/141): python3-3.11.4-1.fc39.ppc64le.rpm 830 kB/s | 28 kB 00:00 (112/141): python3-dateutil-2.8.2-6.fc39.noarch 13 MB/s | 349 kB 00:00 (113/141): python3-dbus-1.3.2-2.fc38.ppc64le.rp 6.5 MB/s | 151 kB 00:00 (114/141): python3-distro-1.8.0-4.fc39.noarch.r 2.0 MB/s | 45 kB 00:00 (115/141): python3-dnf-4.16.1-2.fc39.noarch.rpm 18 MB/s | 564 kB 00:00 (116/141): python3-gpg-1.20.0-3.fc39.ppc64le.rp 9.1 MB/s | 287 kB 00:00 (117/141): python3-dnf-plugins-core-4.4.1-3.fc3 8.0 MB/s | 284 kB 00:00 (118/141): python3-hawkey-0.70.1-3.fc39.ppc64le 4.2 MB/s | 104 kB 00:00 (119/141): python3-libcomps-0.1.19-1.fc39.ppc64 2.2 MB/s | 52 kB 00:00 (120/141): python3-libdnf-0.70.1-3.fc39.ppc64le 16 MB/s | 807 kB 00:00 (121/141): python3-rpm-4.18.91-3.fc39.ppc64le.r 1.4 MB/s | 70 kB 00:00 (122/141): python3-six-1.16.0-9.fc38.noarch.rpm 1.1 MB/s | 42 kB 00:00 (123/141): python3-systemd-235-2.fc38.ppc64le.r 2.9 MB/s | 103 kB 00:00 (124/141): readline-8.2-3.fc38.ppc64le.rpm 5.2 MB/s | 229 kB 00:00 (125/141): python3-libs-3.11.4-1.fc39.ppc64le.r 50 MB/s | 9.4 MB 00:00 (126/141): rpm-4.18.91-3.fc39.ppc64le.rpm 5.7 MB/s | 500 kB 00:00 (127/141): rpm-build-libs-4.18.91-3.fc39.ppc64l 1.5 MB/s | 103 kB 00:00 (128/141): rpm-libs-4.18.91-3.fc39.ppc64le.rpm 11 MB/s | 355 kB 00:00 (129/141): rpm-sign-libs-4.18.91-3.fc39.ppc64le 1.1 MB/s | 26 kB 00:00 (130/141): sed-4.8-12.fc38.ppc64le.rpm 9.4 MB/s | 303 kB 00:00 (131/141): setup-2.14.3-3.fc39.noarch.rpm 4.0 MB/s | 146 kB 00:00 (132/141): rpm-sequoia-1.4.0-3.fc39.ppc64le.rpm 17 MB/s | 1.4 MB 00:00 (133/141): systemd-libs-253.5-6.fc39.ppc64le.rp 18 MB/s | 692 kB 00:00 (134/141): sqlite-libs-3.41.2-3.fc39.ppc64le.rp 12 MB/s | 777 kB 00:00 (135/141): tpm2-tss-4.0.1-3.fc38.ppc64le.rpm 15 MB/s | 628 kB 00:00 (136/141): tzdata-2023c-1.fc39.noarch.rpm 10 MB/s | 433 kB 00:00 (137/141): shadow-utils-4.13-7.fc39.ppc64le.rpm 10 MB/s | 1.2 MB 00:00 (138/141): xz-libs-5.4.3-1.fc39.ppc64le.rpm 3.1 MB/s | 121 kB 00:00 (139/141): zchunk-libs-1.3.1-1.fc39.ppc64le.rpm 1.6 MB/s | 57 kB 00:00 (140/141): zlib-1.2.13-3.fc38.ppc64le.rpm 3.2 MB/s | 100 kB 00:00 (141/141): openssl-libs-3.0.9-1.fc38.ppc64le.rp 4.3 MB/s | 2.3 MB 00:00 -------------------------------------------------------------------------------- Total 22 MB/s | 61 MB 00:02 updates 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-4.fc39.ppc64le 1/1 Preparing : 1/1 Installing : libgcc-13.1.1-4.fc39.ppc64le 1/141 Running scriptlet: libgcc-13.1.1-4.fc39.ppc64le 1/141 Installing : tzdata-2023c-1.fc39.noarch 2/141 Installing : crypto-policies-20230614-1.git5f3458e.fc39.noarc 3/141 Running scriptlet: crypto-policies-20230614-1.git5f3458e.fc39.noarc 3/141 Installing : fedora-release-identity-basic-39-0.14.noarch 4/141 Installing : python-setuptools-wheel-67.7.2-2.fc39.noarch 5/141 Installing : publicsuffix-list-dafsa-20230614-1.fc39.noarch 6/141 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 7/141 Installing : ncurses-base-6.4-4.20230520.fc39.noarch 8/141 Installing : libssh-config-0.10.5-1.fc39.noarch 9/141 Installing : libreport-filesystem-2.17.10-1.fc39.noarch 10/141 Installing : fedora-gpg-keys-39-0.1.noarch 11/141 Installing : fedora-release-39-0.14.noarch 12/141 Installing : fedora-release-common-39-0.14.noarch 13/141 Installing : 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107/141 Verifying : publicsuffix-list-dafsa-20230614-1.fc39.noarch 108/141 Verifying : python-pip-wheel-23.1.2-1.fc39.noarch 109/141 Verifying : python-setuptools-wheel-67.7.2-2.fc39.noarch 110/141 Verifying : python3-3.11.4-1.fc39.ppc64le 111/141 Verifying : python3-dateutil-1:2.8.2-6.fc39.noarch 112/141 Verifying : python3-dbus-1.3.2-2.fc38.ppc64le 113/141 Verifying : python3-distro-1.8.0-4.fc39.noarch 114/141 Verifying : python3-dnf-4.16.1-2.fc39.noarch 115/141 Verifying : python3-dnf-plugins-core-4.4.1-3.fc39.noarch 116/141 Verifying : python3-gpg-1.20.0-3.fc39.ppc64le 117/141 Verifying : python3-hawkey-0.70.1-3.fc39.ppc64le 118/141 Verifying : python3-libcomps-0.1.19-1.fc39.ppc64le 119/141 Verifying : python3-libdnf-0.70.1-3.fc39.ppc64le 120/141 Verifying : python3-libs-3.11.4-1.fc39.ppc64le 121/141 Verifying : python3-rpm-4.18.91-3.fc39.ppc64le 122/141 Verifying : python3-six-1.16.0-9.fc38.noarch 123/141 Verifying : python3-systemd-235-2.fc38.ppc64le 124/141 Verifying : readline-8.2-3.fc38.ppc64le 125/141 Verifying : rpm-4.18.91-3.fc39.ppc64le 126/141 Verifying : rpm-build-libs-4.18.91-3.fc39.ppc64le 127/141 Verifying : rpm-libs-4.18.91-3.fc39.ppc64le 128/141 Verifying : rpm-sequoia-1.4.0-3.fc39.ppc64le 129/141 Verifying : rpm-sign-libs-4.18.91-3.fc39.ppc64le 130/141 Verifying : sed-4.8-12.fc38.ppc64le 131/141 Verifying : setup-2.14.3-3.fc39.noarch 132/141 Verifying : shadow-utils-2:4.13-7.fc39.ppc64le 133/141 Verifying : sqlite-libs-3.41.2-3.fc39.ppc64le 134/141 Verifying : systemd-libs-253.5-6.fc39.ppc64le 135/141 Verifying : tpm2-tss-4.0.1-3.fc38.ppc64le 136/141 Verifying : tzdata-2023c-1.fc39.noarch 137/141 Verifying : xz-libs-5.4.3-1.fc39.ppc64le 138/141 Verifying : zchunk-libs-1.3.1-1.fc39.ppc64le 139/141 Verifying : zlib-1.2.13-3.fc38.ppc64le 140/141 Verifying : openssl-libs-1:3.0.9-1.fc38.ppc64le 141/141 Installed products updated. Installed: alternatives-1.24-1.fc39.ppc64le audit-libs-3.1.1-1.fc39.ppc64le basesystem-11-17.fc39.noarch bash-5.2.15-3.fc38.ppc64le bzip2-libs-1.0.8-13.fc38.ppc64le ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.3-1.fc39.ppc64le coreutils-common-9.3-1.fc39.ppc64le crypto-policies-20230614-1.git5f3458e.fc39.noarch curl-8.1.2-1.fc39.ppc64le cyrus-sasl-lib-2.1.28-10.fc39.ppc64le dbus-libs-1:1.14.8-1.fc39.ppc64le dnf-data-4.16.1-2.fc39.noarch dnf-plugins-core-4.4.1-3.fc39.noarch elfutils-default-yama-scope-0.189-2.fc39.noarch elfutils-libelf-0.189-2.fc39.ppc64le elfutils-libs-0.189-2.fc39.ppc64le expat-2.5.0-2.fc38.ppc64le fedora-gpg-keys-39-0.1.noarch fedora-release-39-0.14.noarch fedora-release-common-39-0.14.noarch fedora-release-identity-basic-39-0.14.noarch fedora-repos-39-0.1.noarch fedora-repos-rawhide-39-0.1.noarch file-libs-5.44-3.fc39.ppc64le filesystem-3.18-4.fc39.ppc64le findutils-1:4.9.0-4.fc39.ppc64le fmt-9.1.0-2.fc38.ppc64le gawk-5.2.2-1.fc39.ppc64le gdbm-libs-1:1.23-3.fc38.ppc64le glib2-2.76.3-1.fc39.ppc64le glibc-2.37.9000-14.fc39.ppc64le glibc-common-2.37.9000-14.fc39.ppc64le glibc-minimal-langpack-2.37.9000-14.fc39.ppc64le gmp-1:6.2.1-4.fc38.ppc64le gnupg2-2.4.2-2.fc39.ppc64le gnutls-3.8.0-6.fc39.ppc64le gpgme-1.20.0-3.fc39.ppc64le grep-3.11-1.fc39.ppc64le ima-evm-utils-1.5-1.fc39.ppc64le json-c-0.16-4.fc38.ppc64le keyutils-libs-1.6.1-6.fc38.ppc64le krb5-libs-1.21-1.fc39.ppc64le libacl-2.3.1-7.fc39.ppc64le libarchive-3.6.1-5.fc39.ppc64le libassuan-2.5.6-1.fc39.ppc64le libattr-2.5.1-7.fc39.ppc64le libb2-0.98.1-8.fc38.ppc64le libblkid-2.39-4.fc39.ppc64le libbrotli-1.0.9-11.fc38.ppc64le libcap-2.48-6.fc38.ppc64le libcap-ng-0.8.3-5.fc38.ppc64le libcom_err-1.47.0-1.fc39.ppc64le libcomps-0.1.19-1.fc39.ppc64le libcurl-8.1.2-1.fc39.ppc64le libdnf-0.70.1-3.fc39.ppc64le libdnf5-5.0.14-1.fc39.ppc64le libeconf-0.4.0-5.fc38.ppc64le libevent-2.1.12-8.fc38.ppc64le libffi-3.4.4-2.fc38.ppc64le libfsverity-1.4-9.fc38.ppc64le libgcc-13.1.1-4.fc39.ppc64le libgcrypt-1.10.2-1.fc39.ppc64le libgomp-13.1.1-4.fc39.ppc64le libgpg-error-1.47-1.fc39.ppc64le libidn2-2.3.4-2.fc38.ppc64le libksba-1.6.4-1.fc39.ppc64le libmodulemd-2.15.0-3.fc39.ppc64le libmount-2.39-4.fc39.ppc64le libnghttp2-1.54.0-1.fc39.ppc64le libnsl2-2.0.0-5.fc38.ppc64le libpsl-0.21.2-3.fc39.ppc64le librepo-1.15.1-2.fc38.ppc64le libreport-filesystem-2.17.10-1.fc39.noarch libselinux-3.5-1.fc39.ppc64le libsemanage-3.5-2.fc39.ppc64le libsepol-3.5-1.fc39.ppc64le libsigsegv-2.14-4.fc38.ppc64le libsmartcols-2.39-4.fc39.ppc64le libsolv-0.7.24-4.fc39.ppc64le libssh-0.10.5-1.fc39.ppc64le libssh-config-0.10.5-1.fc39.noarch libstdc++-13.1.1-4.fc39.ppc64le libtasn1-4.19.0-2.fc38.ppc64le libtirpc-1.3.3-1.rc1.fc39.ppc64le libunistring-1.1-3.fc38.ppc64le libunistring1.0-1.0-1.fc38.ppc64le libuuid-2.39-4.fc39.ppc64le libverto-0.3.2-5.fc38.ppc64le libxcrypt-4.4.35-1.fc39.ppc64le libxml2-2.10.4-1.fc39.ppc64le libyaml-0.2.5-9.fc38.ppc64le libzstd-1.5.5-1.fc39.ppc64le lua-libs-5.4.4-9.fc39.ppc64le lz4-libs-1.9.4-3.fc39.ppc64le mpdecimal-2.5.1-6.fc38.ppc64le mpfr-4.1.1-3.fc38.ppc64le ncurses-base-6.4-4.20230520.fc39.noarch ncurses-libs-6.4-4.20230520.fc39.ppc64le nettle-3.9.1-1.fc39.ppc64le npth-1.6-13.fc39.ppc64le openldap-2.6.4-2.fc39.ppc64le openssl-libs-1:3.0.9-1.fc38.ppc64le p11-kit-0.24.1-6.fc38.ppc64le p11-kit-trust-0.24.1-6.fc38.ppc64le pcre2-10.42-1.fc38.1.ppc64le pcre2-syntax-10.42-1.fc38.1.noarch popt-1.19-2.fc38.ppc64le publicsuffix-list-dafsa-20230614-1.fc39.noarch python-pip-wheel-23.1.2-1.fc39.noarch python-setuptools-wheel-67.7.2-2.fc39.noarch python3-3.11.4-1.fc39.ppc64le python3-dateutil-1:2.8.2-6.fc39.noarch python3-dbus-1.3.2-2.fc38.ppc64le python3-distro-1.8.0-4.fc39.noarch python3-dnf-4.16.1-2.fc39.noarch python3-dnf-plugins-core-4.4.1-3.fc39.noarch python3-gpg-1.20.0-3.fc39.ppc64le python3-hawkey-0.70.1-3.fc39.ppc64le python3-libcomps-0.1.19-1.fc39.ppc64le python3-libdnf-0.70.1-3.fc39.ppc64le python3-libs-3.11.4-1.fc39.ppc64le python3-rpm-4.18.91-3.fc39.ppc64le python3-six-1.16.0-9.fc38.noarch python3-systemd-235-2.fc38.ppc64le readline-8.2-3.fc38.ppc64le rpm-4.18.91-3.fc39.ppc64le rpm-build-libs-4.18.91-3.fc39.ppc64le rpm-libs-4.18.91-3.fc39.ppc64le rpm-sequoia-1.4.0-3.fc39.ppc64le rpm-sign-libs-4.18.91-3.fc39.ppc64le sed-4.8-12.fc38.ppc64le setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-7.fc39.ppc64le sqlite-libs-3.41.2-3.fc39.ppc64le systemd-libs-253.5-6.fc39.ppc64le tpm2-tss-4.0.1-3.fc38.ppc64le tzdata-2023c-1.fc39.noarch xz-libs-5.4.3-1.fc39.ppc64le zchunk-libs-1.3.1-1.fc39.ppc64le zlib-1.2.13-3.fc38.ppc64le Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-ppc64le-1687878414.574464/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 23 kB/s | 2.2 kB 00:00 Copr repository 6.2 MB/s | 1.7 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 29 kB/s | 3.8 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 43 MB/s | 66 MB 00:01 fedora 72 kB/s | 5.1 kB 00:00 updates 91 kB/s | 5.8 kB 00:00 Dependencies resolved. ========================================================================================================================================= Package Arch Version Repository Size ========================================================================================================================================= Installing group/module packages: bash ppc64le 5.2.15-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 M bzip2 ppc64le 1.0.8-13.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53 k coreutils ppc64le 9.3-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 M cpio ppc64le 2.14-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 278 k diffutils ppc64le 3.9-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 397 k fedora-release-common noarch 39-0.14 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17 k findutils ppc64le 1:4.9.0-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 530 k gawk ppc64le 5.2.2-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M glibc-minimal-langpack ppc64le 2.37.9000-14.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 59 k grep ppc64le 3.11-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 297 k gzip ppc64le 1.12-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 163 k info ppc64le 7.0.3-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 200 k patch ppc64le 2.7.6-21.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136 k redhat-rpm-config noarch 255-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 76 k rpm-build ppc64le 4.18.91-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 71 k sed ppc64le 4.8-12.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 303 k shadow-utils ppc64le 2:4.13-7.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M tar ppc64le 2:1.34-8.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 908 k unzip ppc64le 6.0-60.fc38 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 85 k libnsl2 ppc64le 2.0.0-5.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 32 k libpkgconf ppc64le 1.9.4-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43 k libpsl ppc64le 0.21.2-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64 k libpwquality ppc64le 1.4.5-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 111 k librtas ppc64le 2.0.4-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 70 k libselinux ppc64le 3.5-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100 k libsemanage ppc64le 3.5-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 131 k libsepol ppc64le 3.5-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 356 k libsigsegv ppc64le 2.14-4.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 28 k libsmartcols ppc64le 2.39-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 74 k libssh ppc64le 0.10.5-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 238 k libssh-config noarch 0.10.5-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.0 k libstdc++ ppc64le 13.1.1-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 996 k libtasn1 ppc64le 4.19.0-2.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80 k libtirpc ppc64le 1.3.3-1.rc1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 108 k libunistring ppc64le 1.1-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 578 k libunistring1.0 ppc64le 1.0-1.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 575 k libutempter ppc64le 1.2.1-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 26 k libuuid ppc64le 2.39-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30 k libverto ppc64le 0.3.2-5.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22 k libxcrypt ppc64le 4.4.35-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 132 k libxml2 ppc64le 2.10.4-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 780 k libzstd ppc64le 1.5.5-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 336 k lua-libs ppc64le 5.4.4-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149 k lua-srpm-macros noarch 1-8.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.6 k lz4-libs ppc64le 1.9.4-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 85 k mpfr ppc64le 4.1.1-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 609 k ncurses-base noarch 6.4-4.20230520.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 62 k ncurses-libs ppc64le 6.4-4.20230520.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 378 k ocaml-srpm-macros noarch 7-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13 k openblas-srpm-macros noarch 2-13.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.5 k openldap ppc64le 2.6.4-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 287 k openssl-libs ppc64le 1:3.0.9-1.fc38 updates 2.3 M p11-kit ppc64le 0.24.1-6.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 353 k p11-kit-trust ppc64le 0.24.1-6.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 148 k package-notes-srpm-macros noarch 0.5-8.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 k pam ppc64le 1.5.3-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 555 k pam-libs ppc64le 1.5.3-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64 k pcre2 ppc64le 10.42-1.fc38.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 242 k pcre2-syntax noarch 10.42-1.fc38.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144 k perl-srpm-macros noarch 1-48.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.4 k pkgconf ppc64le 1.9.4-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43 k pkgconf-m4 noarch 1.9.4-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14 k pkgconf-pkg-config ppc64le 1.9.4-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.5 k popt ppc64le 1.19-2.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64 k publicsuffix-list-dafsa noarch 20230614-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 57 k pyproject-srpm-macros noarch 1.9.0-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 15 k python-srpm-macros noarch 3.11-10.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 26 k qt5-srpm-macros noarch 5.15.10-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.8 k qt6-srpm-macros noarch 6.5.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.2 k readline ppc64le 8.2-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229 k rpm ppc64le 4.18.91-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500 k rpm-build-libs ppc64le 4.18.91-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103 k rpm-libs ppc64le 4.18.91-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 355 k rpm-sequoia ppc64le 1.4.0-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 M rpmautospec-rpm-macros noarch 0.3.5-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.9 k rust-srpm-macros noarch 24-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 12 k setup noarch 2.14.3-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146 k sqlite-libs ppc64le 3.41.2-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 777 k systemd-libs ppc64le 253.5-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 692 k tzdata noarch 2023c-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 433 k util-linux-core ppc64le 2.39-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 519 k xxhash-libs ppc64le 0.8.1-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k xz-libs ppc64le 5.4.3-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121 k zip ppc64le 3.0-36.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 273 k zlib ppc64le 1.2.13-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100 k zstd ppc64le 1.5.5-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 499 k Installing Groups: Buildsystem building group Transaction Summary ========================================================================================================================================= Install 155 Packages Total size: 57 M Installed size: 329 M Downloading Packages: [SKIPPED] alternatives-1.24-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-10.fc39.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.1.1-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] authselect-1.4.2-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.2-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] basesystem-11-17.fc39.noarch.rpm: Already downloaded [SKIPPED] bash-5.2.15-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] binutils-2.40-9.fc39.ppc64le.rpm: Already downloaded [SKIPPED] binutils-gold-2.40-9.fc39.ppc64le.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-13.fc38.ppc64le.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-13.fc38.ppc64le.rpm: Already downloaded [SKIPPED] ca-certificates-2023.2.60-2.fc38.noarch.rpm: 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elfutils-default-yama-scope-0.189-2.fc39.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.189-2.fc39.ppc64le.rpm: Already downloaded [SKIPPED] elfutils-libs-0.189-2.fc39.ppc64le.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-39-0.1.noarch.rpm: Already downloaded [SKIPPED] fedora-release-39-0.14.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-39-0.14.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-39-0.14.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-39-0.1.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-39-0.1.noarch.rpm: Already downloaded [SKIPPED] file-5.44-3.fc39.ppc64le.rpm: Already downloaded [SKIPPED] file-libs-5.44-3.fc39.ppc64le.rpm: Already downloaded [SKIPPED] filesystem-3.18-4.fc39.ppc64le.rpm: Already downloaded [SKIPPED] findutils-4.9.0-4.fc39.ppc64le.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-11.fc38.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-7.fc38.noarch.rpm: 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kernel-srpm-macros-1.0-19.fc39.noarch.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.1-6.fc38.ppc64le.rpm: Already downloaded [SKIPPED] krb5-libs-1.21-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libacl-2.3.1-7.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libarchive-3.6.1-5.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libattr-2.5.1-7.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libblkid-2.39-4.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libbrotli-1.0.9-11.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libcap-2.48-6.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.3-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libcom_err-1.47.0-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libcurl-8.1.2-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libdb-5.3.28-55.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libeconf-0.4.0-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libevent-2.1.12-8.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libfdisk-2.39-4.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libffi-3.4.4-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libgcc-13.1.1-4.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libgomp-13.1.1-4.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libidn2-2.3.4-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libmount-2.39-4.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libnghttp2-1.54.0-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libnsl2-2.0.0-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libpkgconf-1.9.4-2.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libpsl-0.21.2-3.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libpwquality-1.4.5-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] librtas-2.0.4-2.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libselinux-3.5-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libsemanage-3.5-2.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libsepol-3.5-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libsigsegv-2.14-4.fc38.ppc64le.rpm: 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rpm-build-4.18.91-3.fc39.ppc64le.rpm: Already downloaded [SKIPPED] rpm-build-libs-4.18.91-3.fc39.ppc64le.rpm: Already downloaded [SKIPPED] rpm-libs-4.18.91-3.fc39.ppc64le.rpm: Already downloaded [SKIPPED] rpm-sequoia-1.4.0-3.fc39.ppc64le.rpm: Already downloaded [SKIPPED] rpmautospec-rpm-macros-0.3.5-2.fc39.noarch.rpm: Already downloaded [SKIPPED] rust-srpm-macros-24-2.fc39.noarch.rpm: Already downloaded [SKIPPED] sed-4.8-12.fc38.ppc64le.rpm: Already downloaded [SKIPPED] setup-2.14.3-3.fc39.noarch.rpm: Already downloaded [SKIPPED] shadow-utils-4.13-7.fc39.ppc64le.rpm: Already downloaded [SKIPPED] sqlite-libs-3.41.2-3.fc39.ppc64le.rpm: Already downloaded [SKIPPED] systemd-libs-253.5-6.fc39.ppc64le.rpm: Already downloaded [SKIPPED] tar-1.34-8.fc39.ppc64le.rpm: Already downloaded [SKIPPED] tzdata-2023c-1.fc39.noarch.rpm: Already downloaded [SKIPPED] unzip-6.0-60.fc38.ppc64le.rpm: Already downloaded [SKIPPED] util-linux-2.39-4.fc39.ppc64le.rpm: Already downloaded [SKIPPED] util-linux-core-2.39-4.fc39.ppc64le.rpm: Already downloaded [SKIPPED] which-2.21-39.fc39.ppc64le.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.1-5.fc39.ppc64le.rpm: Already downloaded [SKIPPED] xz-5.4.3-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] xz-libs-5.4.3-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] zip-3.0-36.fc38.ppc64le.rpm: Already downloaded [SKIPPED] zlib-1.2.13-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] zstd-1.5.5-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] gdb-minimal-13.2-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] openssl-libs-3.0.9-1.fc38.ppc64le.rpm: Already downloaded updates 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-4.fc39.ppc64le 1/1 Preparing : 1/1 Installing : libgcc-13.1.1-4.fc39.ppc64le 1/155 Running scriptlet: libgcc-13.1.1-4.fc39.ppc64le 1/155 Installing : crypto-policies-20230614-1.git5f3458e.fc39.noarc 2/155 Running scriptlet: crypto-policies-20230614-1.git5f3458e.fc39.noarc 2/155 Installing : tzdata-2023c-1.fc39.noarch 3/155 Installing : fedora-release-identity-basic-39-0.14.noarch 4/155 Installing : rust-srpm-macros-24-2.fc39.noarch 5/155 Installing : qt6-srpm-macros-6.5.1-1.fc39.noarch 6/155 Installing : qt5-srpm-macros-5.15.10-1.fc39.noarch 7/155 Installing : pyproject-srpm-macros-1.9.0-1.fc39.noarch 8/155 Installing : publicsuffix-list-dafsa-20230614-1.fc39.noarch 9/155 Installing : pkgconf-m4-1.9.4-2.fc39.noarch 10/155 Installing : perl-srpm-macros-1-48.fc38.noarch 11/155 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 12/155 Installing : package-notes-srpm-macros-0.5-8.fc39.noarch 13/155 Installing : 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libselinux-3.5-1.fc39.ppc64le 83/155 Verifying : libsemanage-3.5-2.fc39.ppc64le 84/155 Verifying : libsepol-3.5-1.fc39.ppc64le 85/155 Verifying : libsigsegv-2.14-4.fc38.ppc64le 86/155 Verifying : libsmartcols-2.39-4.fc39.ppc64le 87/155 Verifying : libssh-0.10.5-1.fc39.ppc64le 88/155 Verifying : libssh-config-0.10.5-1.fc39.noarch 89/155 Verifying : libstdc++-13.1.1-4.fc39.ppc64le 90/155 Verifying : libtasn1-4.19.0-2.fc38.ppc64le 91/155 Verifying : libtirpc-1.3.3-1.rc1.fc39.ppc64le 92/155 Verifying : libunistring-1.1-3.fc38.ppc64le 93/155 Verifying : libunistring1.0-1.0-1.fc38.ppc64le 94/155 Verifying : libutempter-1.2.1-9.fc39.ppc64le 95/155 Verifying : libuuid-2.39-4.fc39.ppc64le 96/155 Verifying : libverto-0.3.2-5.fc38.ppc64le 97/155 Verifying : libxcrypt-4.4.35-1.fc39.ppc64le 98/155 Verifying : libxml2-2.10.4-1.fc39.ppc64le 99/155 Verifying : libzstd-1.5.5-1.fc39.ppc64le 100/155 Verifying : lua-libs-5.4.4-9.fc39.ppc64le 101/155 Verifying : lua-srpm-macros-1-8.fc38.noarch 102/155 Verifying : lz4-libs-1.9.4-3.fc39.ppc64le 103/155 Verifying : mpfr-4.1.1-3.fc38.ppc64le 104/155 Verifying : ncurses-base-6.4-4.20230520.fc39.noarch 105/155 Verifying : ncurses-libs-6.4-4.20230520.fc39.ppc64le 106/155 Verifying : ocaml-srpm-macros-7-3.fc38.noarch 107/155 Verifying : openblas-srpm-macros-2-13.fc38.noarch 108/155 Verifying : openldap-2.6.4-2.fc39.ppc64le 109/155 Verifying : p11-kit-0.24.1-6.fc38.ppc64le 110/155 Verifying : p11-kit-trust-0.24.1-6.fc38.ppc64le 111/155 Verifying : package-notes-srpm-macros-0.5-8.fc39.noarch 112/155 Verifying : pam-1.5.3-1.fc39.ppc64le 113/155 Verifying : pam-libs-1.5.3-1.fc39.ppc64le 114/155 Verifying : patch-2.7.6-21.fc39.ppc64le 115/155 Verifying : pcre2-10.42-1.fc38.1.ppc64le 116/155 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 117/155 Verifying : perl-srpm-macros-1-48.fc38.noarch 118/155 Verifying : pkgconf-1.9.4-2.fc39.ppc64le 119/155 Verifying : pkgconf-m4-1.9.4-2.fc39.noarch 120/155 Verifying : pkgconf-pkg-config-1.9.4-2.fc39.ppc64le 121/155 Verifying : popt-1.19-2.fc38.ppc64le 122/155 Verifying : publicsuffix-list-dafsa-20230614-1.fc39.noarch 123/155 Verifying : pyproject-srpm-macros-1.9.0-1.fc39.noarch 124/155 Verifying : python-srpm-macros-3.11-10.fc39.noarch 125/155 Verifying : qt5-srpm-macros-5.15.10-1.fc39.noarch 126/155 Verifying : qt6-srpm-macros-6.5.1-1.fc39.noarch 127/155 Verifying : readline-8.2-3.fc38.ppc64le 128/155 Verifying : redhat-rpm-config-255-1.fc39.noarch 129/155 Verifying : rpm-4.18.91-3.fc39.ppc64le 130/155 Verifying : rpm-build-4.18.91-3.fc39.ppc64le 131/155 Verifying : rpm-build-libs-4.18.91-3.fc39.ppc64le 132/155 Verifying : rpm-libs-4.18.91-3.fc39.ppc64le 133/155 Verifying : rpm-sequoia-1.4.0-3.fc39.ppc64le 134/155 Verifying : rpmautospec-rpm-macros-0.3.5-2.fc39.noarch 135/155 Verifying : rust-srpm-macros-24-2.fc39.noarch 136/155 Verifying : sed-4.8-12.fc38.ppc64le 137/155 Verifying : setup-2.14.3-3.fc39.noarch 138/155 Verifying : shadow-utils-2:4.13-7.fc39.ppc64le 139/155 Verifying : sqlite-libs-3.41.2-3.fc39.ppc64le 140/155 Verifying : systemd-libs-253.5-6.fc39.ppc64le 141/155 Verifying : tar-2:1.34-8.fc39.ppc64le 142/155 Verifying : tzdata-2023c-1.fc39.noarch 143/155 Verifying : unzip-6.0-60.fc38.ppc64le 144/155 Verifying : util-linux-2.39-4.fc39.ppc64le 145/155 Verifying : util-linux-core-2.39-4.fc39.ppc64le 146/155 Verifying : which-2.21-39.fc39.ppc64le 147/155 Verifying : xxhash-libs-0.8.1-5.fc39.ppc64le 148/155 Verifying : xz-5.4.3-1.fc39.ppc64le 149/155 Verifying : xz-libs-5.4.3-1.fc39.ppc64le 150/155 Verifying : zip-3.0-36.fc38.ppc64le 151/155 Verifying : zlib-1.2.13-3.fc38.ppc64le 152/155 Verifying : zstd-1.5.5-1.fc39.ppc64le 153/155 Verifying : gdb-minimal-13.2-1.fc38.ppc64le 154/155 Verifying : openssl-libs-1:3.0.9-1.fc38.ppc64le 155/155 Installed: alternatives-1.24-1.fc39.ppc64le ansible-srpm-macros-1-10.fc39.noarch audit-libs-3.1.1-1.fc39.ppc64le authselect-1.4.2-2.fc38.ppc64le authselect-libs-1.4.2-2.fc38.ppc64le basesystem-11-17.fc39.noarch bash-5.2.15-3.fc38.ppc64le binutils-2.40-9.fc39.ppc64le binutils-gold-2.40-9.fc39.ppc64le bzip2-1.0.8-13.fc38.ppc64le bzip2-libs-1.0.8-13.fc38.ppc64le ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.3-1.fc39.ppc64le coreutils-common-9.3-1.fc39.ppc64le cpio-2.14-2.fc39.ppc64le cracklib-2.9.7-31.fc38.ppc64le crypto-policies-20230614-1.git5f3458e.fc39.noarch curl-8.1.2-1.fc39.ppc64le cyrus-sasl-lib-2.1.28-10.fc39.ppc64le debugedit-5.0-7.fc38.ppc64le diffutils-3.9-4.fc39.ppc64le dwz-0.15-2.fc38.ppc64le ed-1.19-2.fc38.ppc64le efi-srpm-macros-5-8.fc39.noarch elfutils-0.189-2.fc39.ppc64le elfutils-debuginfod-client-0.189-2.fc39.ppc64le elfutils-default-yama-scope-0.189-2.fc39.noarch elfutils-libelf-0.189-2.fc39.ppc64le elfutils-libs-0.189-2.fc39.ppc64le fedora-gpg-keys-39-0.1.noarch fedora-release-39-0.14.noarch fedora-release-common-39-0.14.noarch fedora-release-identity-basic-39-0.14.noarch fedora-repos-39-0.1.noarch fedora-repos-rawhide-39-0.1.noarch file-5.44-3.fc39.ppc64le file-libs-5.44-3.fc39.ppc64le filesystem-3.18-4.fc39.ppc64le findutils-1:4.9.0-4.fc39.ppc64le fonts-srpm-macros-1:2.0.5-11.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.2.2-1.fc39.ppc64le gdb-minimal-13.2-1.fc38.ppc64le gdbm-libs-1:1.23-3.fc38.ppc64le ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37.9000-14.fc39.ppc64le glibc-common-2.37.9000-14.fc39.ppc64le glibc-gconv-extra-2.37.9000-14.fc39.ppc64le glibc-minimal-langpack-2.37.9000-14.fc39.ppc64le gmp-1:6.2.1-4.fc38.ppc64le gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.2.0-3.fc39.noarch grep-3.11-1.fc39.ppc64le gzip-1.12-3.fc38.ppc64le info-7.0.3-2.fc39.ppc64le jansson-2.13.1-6.fc38.ppc64le kernel-srpm-macros-1.0-19.fc39.noarch keyutils-libs-1.6.1-6.fc38.ppc64le krb5-libs-1.21-1.fc39.ppc64le libacl-2.3.1-7.fc39.ppc64le libarchive-3.6.1-5.fc39.ppc64le libattr-2.5.1-7.fc39.ppc64le libblkid-2.39-4.fc39.ppc64le libbrotli-1.0.9-11.fc38.ppc64le libcap-2.48-6.fc38.ppc64le libcap-ng-0.8.3-5.fc38.ppc64le libcom_err-1.47.0-1.fc39.ppc64le libcurl-8.1.2-1.fc39.ppc64le libdb-5.3.28-55.fc38.ppc64le libeconf-0.4.0-5.fc38.ppc64le libevent-2.1.12-8.fc38.ppc64le libfdisk-2.39-4.fc39.ppc64le libffi-3.4.4-2.fc38.ppc64le libgcc-13.1.1-4.fc39.ppc64le libgomp-13.1.1-4.fc39.ppc64le libidn2-2.3.4-2.fc38.ppc64le libmount-2.39-4.fc39.ppc64le libnghttp2-1.54.0-1.fc39.ppc64le libnsl2-2.0.0-5.fc38.ppc64le libpkgconf-1.9.4-2.fc39.ppc64le libpsl-0.21.2-3.fc39.ppc64le libpwquality-1.4.5-3.fc38.ppc64le librtas-2.0.4-2.fc39.ppc64le libselinux-3.5-1.fc39.ppc64le libsemanage-3.5-2.fc39.ppc64le libsepol-3.5-1.fc39.ppc64le libsigsegv-2.14-4.fc38.ppc64le libsmartcols-2.39-4.fc39.ppc64le libssh-0.10.5-1.fc39.ppc64le libssh-config-0.10.5-1.fc39.noarch libstdc++-13.1.1-4.fc39.ppc64le libtasn1-4.19.0-2.fc38.ppc64le libtirpc-1.3.3-1.rc1.fc39.ppc64le libunistring-1.1-3.fc38.ppc64le libunistring1.0-1.0-1.fc38.ppc64le libutempter-1.2.1-9.fc39.ppc64le libuuid-2.39-4.fc39.ppc64le libverto-0.3.2-5.fc38.ppc64le libxcrypt-4.4.35-1.fc39.ppc64le libxml2-2.10.4-1.fc39.ppc64le libzstd-1.5.5-1.fc39.ppc64le lua-libs-5.4.4-9.fc39.ppc64le lua-srpm-macros-1-8.fc38.noarch lz4-libs-1.9.4-3.fc39.ppc64le mpfr-4.1.1-3.fc38.ppc64le ncurses-base-6.4-4.20230520.fc39.noarch ncurses-libs-6.4-4.20230520.fc39.ppc64le ocaml-srpm-macros-7-3.fc38.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.4-2.fc39.ppc64le openssl-libs-1:3.0.9-1.fc38.ppc64le p11-kit-0.24.1-6.fc38.ppc64le p11-kit-trust-0.24.1-6.fc38.ppc64le package-notes-srpm-macros-0.5-8.fc39.noarch pam-1.5.3-1.fc39.ppc64le pam-libs-1.5.3-1.fc39.ppc64le patch-2.7.6-21.fc39.ppc64le pcre2-10.42-1.fc38.1.ppc64le pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-48.fc38.noarch pkgconf-1.9.4-2.fc39.ppc64le pkgconf-m4-1.9.4-2.fc39.noarch pkgconf-pkg-config-1.9.4-2.fc39.ppc64le popt-1.19-2.fc38.ppc64le publicsuffix-list-dafsa-20230614-1.fc39.noarch pyproject-srpm-macros-1.9.0-1.fc39.noarch python-srpm-macros-3.11-10.fc39.noarch qt5-srpm-macros-5.15.10-1.fc39.noarch qt6-srpm-macros-6.5.1-1.fc39.noarch readline-8.2-3.fc38.ppc64le redhat-rpm-config-255-1.fc39.noarch rpm-4.18.91-3.fc39.ppc64le rpm-build-4.18.91-3.fc39.ppc64le rpm-build-libs-4.18.91-3.fc39.ppc64le rpm-libs-4.18.91-3.fc39.ppc64le rpm-sequoia-1.4.0-3.fc39.ppc64le rpmautospec-rpm-macros-0.3.5-2.fc39.noarch rust-srpm-macros-24-2.fc39.noarch sed-4.8-12.fc38.ppc64le setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-7.fc39.ppc64le sqlite-libs-3.41.2-3.fc39.ppc64le systemd-libs-253.5-6.fc39.ppc64le tar-2:1.34-8.fc39.ppc64le tzdata-2023c-1.fc39.noarch unzip-6.0-60.fc38.ppc64le util-linux-2.39-4.fc39.ppc64le util-linux-core-2.39-4.fc39.ppc64le which-2.21-39.fc39.ppc64le xxhash-libs-0.8.1-5.fc39.ppc64le xz-5.4.3-1.fc39.ppc64le xz-libs-5.4.3-1.fc39.ppc64le zip-3.0-36.fc38.ppc64le zlib-1.2.13-3.fc38.ppc64le zstd-1.5.5-1.fc39.ppc64le Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: publicsuffix-list-dafsa-20230614-1.fc39.noarch keyutils-libs-1.6.1-6.fc38.ppc64le libdb-5.3.28-55.fc38.ppc64le diffutils-3.9-4.fc39.ppc64le alternatives-1.24-1.fc39.ppc64le openblas-srpm-macros-2-13.fc38.noarch zlib-1.2.13-3.fc38.ppc64le libcom_err-1.47.0-1.fc39.ppc64le tzdata-2023c-1.fc39.noarch file-libs-5.44-3.fc39.ppc64le qt5-srpm-macros-5.15.10-1.fc39.noarch p11-kit-0.24.1-6.fc38.ppc64le gawk-5.2.2-1.fc39.ppc64le filesystem-3.18-4.fc39.ppc64le elfutils-0.189-2.fc39.ppc64le fonts-srpm-macros-2.0.5-11.fc38.noarch libpwquality-1.4.5-3.fc38.ppc64le rpm-build-4.18.91-3.fc39.ppc64le libpkgconf-1.9.4-2.fc39.ppc64le librtas-2.0.4-2.fc39.ppc64le xz-libs-5.4.3-1.fc39.ppc64le authselect-1.4.2-2.fc38.ppc64le package-notes-srpm-macros-0.5-8.fc39.noarch libffi-3.4.4-2.fc38.ppc64le cyrus-sasl-lib-2.1.28-10.fc39.ppc64le libnsl2-2.0.0-5.fc38.ppc64le libselinux-3.5-1.fc39.ppc64le coreutils-common-9.3-1.fc39.ppc64le libcap-2.48-6.fc38.ppc64le curl-8.1.2-1.fc39.ppc64le xz-5.4.3-1.fc39.ppc64le libbrotli-1.0.9-11.fc38.ppc64le dwz-0.15-2.fc38.ppc64le libgomp-13.1.1-4.fc39.ppc64le libgcc-13.1.1-4.fc39.ppc64le xxhash-libs-0.8.1-5.fc39.ppc64le zstd-1.5.5-1.fc39.ppc64le findutils-4.9.0-4.fc39.ppc64le elfutils-debuginfod-client-0.189-2.fc39.ppc64le sqlite-libs-3.41.2-3.fc39.ppc64le python-srpm-macros-3.11-10.fc39.noarch ansible-srpm-macros-1-10.fc39.noarch rust-srpm-macros-24-2.fc39.noarch fedora-repos-39-0.1.noarch libsigsegv-2.14-4.fc38.ppc64le glibc-minimal-langpack-2.37.9000-14.fc39.ppc64le libevent-2.1.12-8.fc38.ppc64le go-srpm-macros-3.2.0-3.fc39.noarch pcre2-10.42-1.fc38.1.ppc64le gpg-pubkey-eb10b464-6202d9c6 libunistring-1.1-3.fc38.ppc64le libarchive-3.6.1-5.fc39.ppc64le setup-2.14.3-3.fc39.noarch unzip-6.0-60.fc38.ppc64le pam-1.5.3-1.fc39.ppc64le rpm-libs-4.18.91-3.fc39.ppc64le libacl-2.3.1-7.fc39.ppc64le zip-3.0-36.fc38.ppc64le pcre2-syntax-10.42-1.fc38.1.noarch file-5.44-3.fc39.ppc64le util-linux-core-2.39-4.fc39.ppc64le popt-1.19-2.fc38.ppc64le rpm-4.18.91-3.fc39.ppc64le gmp-6.2.1-4.fc38.ppc64le openssl-libs-3.0.9-1.fc38.ppc64le libxcrypt-4.4.35-1.fc39.ppc64le libtirpc-1.3.3-1.rc1.fc39.ppc64le ncurses-libs-6.4-4.20230520.fc39.ppc64le libsepol-3.5-1.fc39.ppc64le lua-srpm-macros-1-8.fc38.noarch fedora-release-common-39-0.14.noarch ghc-srpm-macros-1.6.1-1.fc38.noarch redhat-rpm-config-255-1.fc39.noarch fedora-gpg-keys-39-0.1.noarch libutempter-1.2.1-9.fc39.ppc64le glibc-2.37.9000-14.fc39.ppc64le fpc-srpm-macros-1.3-7.fc38.noarch cracklib-2.9.7-31.fc38.ppc64le readline-8.2-3.fc38.ppc64le gnat-srpm-macros-6-2.fc38.noarch shadow-utils-4.13-7.fc39.ppc64le binutils-gold-2.40-9.fc39.ppc64le grep-3.11-1.fc39.ppc64le libuuid-2.39-4.fc39.ppc64le sed-4.8-12.fc38.ppc64le libattr-2.5.1-7.fc39.ppc64le libsmartcols-2.39-4.fc39.ppc64le basesystem-11-17.fc39.noarch jansson-2.13.1-6.fc38.ppc64le binutils-2.40-9.fc39.ppc64le libnghttp2-1.54.0-1.fc39.ppc64le systemd-libs-253.5-6.fc39.ppc64le pkgconf-m4-1.9.4-2.fc39.noarch qt6-srpm-macros-6.5.1-1.fc39.noarch tar-1.34-8.fc39.ppc64le libeconf-0.4.0-5.fc38.ppc64le libzstd-1.5.5-1.fc39.ppc64le bzip2-libs-1.0.8-13.fc38.ppc64le libssh-0.10.5-1.fc39.ppc64le gzip-1.12-3.fc38.ppc64le libidn2-2.3.4-2.fc38.ppc64le debugedit-5.0-7.fc38.ppc64le util-linux-2.39-4.fc39.ppc64le pam-libs-1.5.3-1.fc39.ppc64le bash-5.2.15-3.fc38.ppc64le mpfr-4.1.1-3.fc38.ppc64le elfutils-libs-0.189-2.fc39.ppc64le gdb-minimal-13.2-1.fc38.ppc64le authselect-libs-1.4.2-2.fc38.ppc64le which-2.21-39.fc39.ppc64le info-7.0.3-2.fc39.ppc64le libxml2-2.10.4-1.fc39.ppc64le p11-kit-trust-0.24.1-6.fc38.ppc64le libcurl-8.1.2-1.fc39.ppc64le gdbm-libs-1.23-3.fc38.ppc64le rpm-sequoia-1.4.0-3.fc39.ppc64le crypto-policies-20230614-1.git5f3458e.fc39.noarch pkgconf-pkg-config-1.9.4-2.fc39.ppc64le pyproject-srpm-macros-1.9.0-1.fc39.noarch ca-certificates-2023.2.60-2.fc38.noarch ncurses-base-6.4-4.20230520.fc39.noarch rpm-build-libs-4.18.91-3.fc39.ppc64le libsemanage-3.5-2.fc39.ppc64le lua-libs-5.4.4-9.fc39.ppc64le elfutils-default-yama-scope-0.189-2.fc39.noarch coreutils-9.3-1.fc39.ppc64le efi-srpm-macros-5-8.fc39.noarch perl-srpm-macros-1-48.fc38.noarch libblkid-2.39-4.fc39.ppc64le glibc-gconv-extra-2.37.9000-14.fc39.ppc64le lz4-libs-1.9.4-3.fc39.ppc64le libverto-0.3.2-5.fc38.ppc64le audit-libs-3.1.1-1.fc39.ppc64le pkgconf-1.9.4-2.fc39.ppc64le openldap-2.6.4-2.fc39.ppc64le libfdisk-2.39-4.fc39.ppc64le libtasn1-4.19.0-2.fc38.ppc64le libcap-ng-0.8.3-5.fc38.ppc64le libstdc++-13.1.1-4.fc39.ppc64le patch-2.7.6-21.fc39.ppc64le ed-1.19-2.fc38.ppc64le cpio-2.14-2.fc39.ppc64le elfutils-libelf-0.189-2.fc39.ppc64le kernel-srpm-macros-1.0-19.fc39.noarch fedora-release-39-0.14.noarch ocaml-srpm-macros-7-3.fc38.noarch krb5-libs-1.21-1.fc39.ppc64le libssh-config-0.10.5-1.fc39.noarch libunistring1.0-1.0-1.fc38.ppc64le bzip2-1.0.8-13.fc38.ppc64le libmount-2.39-4.fc39.ppc64le fedora-release-identity-basic-39-0.14.noarch rpmautospec-rpm-macros-0.3.5-2.fc39.noarch libpsl-0.21.2-3.fc39.ppc64le glibc-common-2.37.9000-14.fc39.ppc64le fedora-repos-rawhide-39-0.1.noarch Start: buildsrpm Start: rpmbuild -bs warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1687824000 Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-5.fc39.src.rpm RPM build warnings: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-38-ppc64le-1687878414.574464/root/var/log/dnf.rpm.log /var/lib/mock/fedora-38-ppc64le-1687878414.574464/root/var/log/dnf.librepo.log /var/lib/mock/fedora-38-ppc64le-1687878414.574464/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-h_k0qzla/smoldyn/smoldyn.spec) Config(child) 2 minutes 31 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/smoldyn-2.67.3-5.fc39.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1687878414.574464 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-5.fc39.src.rpm) Config(fedora-38-ppc64le) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-ppc64le-bootstrap-1687878414.574464/root. INFO: reusing tmpfs at /var/lib/mock/fedora-38-ppc64le-bootstrap-1687878414.574464/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-ppc64le-1687878414.574464/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 28 kB/s | 2.2 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 21 kB/s | 3.8 kB 00:00 fedora 79 kB/s | 5.1 kB 00:00 updates 89 kB/s | 5.8 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for smoldyn-2.67.3-5.fc39.src.rpm Start: build setup for smoldyn-2.67.3-5.fc39.src.rpm warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1687824000 Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-5.fc39.src.rpm RPM build warnings: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 28 kB/s | 2.2 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 39 kB/s | 3.8 kB 00:00 fedora 77 kB/s | 5.1 kB 00:00 updates 79 kB/s | 5.8 kB 00:00 Dependencies resolved. ===================================================================================================================================== Package Arch Version Repository Size 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 45 k Installing dependencies: annobin-docs noarch 12.14-1.fc38 updates 94 k annobin-plugin-gcc ppc64le 12.14-1.fc38 updates 895 k boost ppc64le 1.81.0-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14 k boost-atomic ppc64le 1.81.0-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20 k boost-chrono ppc64le 1.81.0-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 26 k boost-container ppc64le 1.81.0-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 42 k boost-context ppc64le 1.81.0-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17 k boost-contract ppc64le 1.81.0-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 46 k boost-coroutine ppc64le 1.81.0-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k boost-date-time ppc64le 1.81.0-1.fc39 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Transaction Summary ===================================================================================================================================== Install 243 Packages Total size: 203 M Total download size: 122 M Installed size: 930 M Downloading Packages: [SKIPPED] graphite2-1.3.14-11.fc38.ppc64le.rpm: Already downloaded [SKIPPED] python3-contourpy-1.0.7-4.fc39~bootstrap.ppc64le.rpm: Already downloaded [SKIPPED] python3-fonttools-4.40.0-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] python3-matplotlib-3.7.1-4.fc39.ppc64le.rpm: Already downloaded [SKIPPED] python3-matplotlib-data-3.7.1-4.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-matplotlib-data-fonts-3.7.1-4.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-matplotlib-tk-3.7.1-4.fc39.ppc64le.rpm: Already downloaded [SKIPPED] cairo-1.17.8-4.fc39.ppc64le.rpm: Already downloaded [SKIPPED] dejavu-sans-fonts-2.37-20.fc38.noarch.rpm: Already downloaded [SKIPPED] expat-2.5.0-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] flexiblas-3.3.1-3.fc39.ppc64le.rpm: Already downloaded [SKIPPED] flexiblas-netlib-3.3.1-3.fc39.ppc64le.rpm: Already downloaded [SKIPPED] flexiblas-openblas-openmp-3.3.1-3.fc39.ppc64le.rpm: Already downloaded [SKIPPED] fontconfig-2.14.2-3.fc39.ppc64le.rpm: Already downloaded [SKIPPED] fonts-filesystem-2.0.5-11.fc38.noarch.rpm: Already downloaded [SKIPPED] fribidi-1.0.13-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] glib2-2.76.3-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] gnutls-3.8.0-6.fc39.ppc64le.rpm: Already downloaded [SKIPPED] google-noto-fonts-common-20230601-3.fc39.noarch.rpm: Already downloaded [SKIPPED] google-noto-sans-vf-fonts-20230601-3.fc39.noarch.rpm: Already downloaded [SKIPPED] harfbuzz-7.3.0-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] jbigkit-libs-2.1-25.fc38.ppc64le.rpm: Already downloaded [SKIPPED] langpacks-core-font-en-3.0-34.fc39.noarch.rpm: Already downloaded [SKIPPED] lcms2-2.15-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libX11-1.8.6-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libX11-common-1.8.6-1.fc39.noarch.rpm: Already downloaded [SKIPPED] libXau-1.0.11-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libXext-1.3.5-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libXft-2.3.8-2.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libXrender-0.9.11-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libb2-0.98.1-8.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libgfortran-13.1.1-4.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libimagequant-4.0.1-4.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libjpeg-turbo-2.1.4-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libpng-1.6.37-14.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libqhull_r-7.2.1-12.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libquadmath-13.1.1-4.fc39.ppc64le.rpm: Already downloaded [SKIPPED] libraqm-0.8.0-4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libtiff-4.4.0-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libwebp-1.3.0-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libxcb-1.13.1-11.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libxslt-1.1.38-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] mpdecimal-2.5.1-6.fc38.ppc64le.rpm: Already downloaded [SKIPPED] nettle-3.9.1-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] openblas-0.3.21-4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] openblas-openmp-0.3.21-4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] openjpeg2-2.5.0-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] pixman-0.42.2-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] pyproject-rpm-macros-1.9.0-1.fc39.noarch.rpm: Already downloaded [SKIPPED] python-pip-wheel-23.1.2-1.fc39.noarch.rpm: Already downloaded [SKIPPED] python-rpm-macros-3.11-10.fc39.noarch.rpm: Already downloaded [SKIPPED] python-setuptools-wheel-67.7.2-2.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-3.11.4-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] python3-appdirs-1.4.4-8.fc38.noarch.rpm: Already downloaded [SKIPPED] python3-brotli-1.0.9-11.fc38.ppc64le.rpm: Already downloaded [SKIPPED] python3-cairo-1.23.0-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] python3-cycler-0.11.0-7.fc38.noarch.rpm: Already downloaded [SKIPPED] python3-dateutil-2.8.2-6.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-devel-3.11.4-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] python3-fs-2.4.16-2.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-kiwisolver-1.4.4-7.fc38.ppc64le.rpm: Already downloaded [SKIPPED] python3-libs-3.11.4-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] python3-lxml-4.9.2-5.fc39.ppc64le.rpm: Already downloaded [SKIPPED] python3-munkres-1.1.2-14.fc38.noarch.rpm: Already downloaded [SKIPPED] python3-numpy-1.24.3-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] python3-numpy-f2py-1.24.3-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] python3-olefile-0.46-19.fc38.noarch.rpm: Already downloaded [SKIPPED] python3-packaging-23.1-1.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-pillow-9.5.0-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] python3-pillow-tk-9.5.0-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] python3-pyparsing-3.0.9-7.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-rpm-generators-14-6.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-rpm-macros-3.11-10.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-scipy-1.10.1-2.fc39.ppc64le.rpm: Already downloaded [SKIPPED] python3-setuptools-67.7.2-2.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-six-1.16.0-9.fc38.noarch.rpm: Already downloaded [SKIPPED] python3-tkinter-3.11.4-1.fc39.ppc64le.rpm: Already downloaded [SKIPPED] tcl-8.6.12-4.fc39.ppc64le.rpm: Already downloaded [SKIPPED] tk-8.6.12-4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] xml-common-0.6.3-60.fc38.noarch.rpm: Already downloaded [SKIPPED] freetype-2.13.0-2.fc38.ppc64le.rpm: Already downloaded (82/243): pybind11-devel-2.10.4-3.fc39.ppc64le. 1.5 MB/s | 165 kB 00:00 (83/243): 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perl-mro-1.26-497.fc39.ppc64le.rpm 709 kB/s | 30 kB 00:00 (224/243): perl-overload-1.35-497.fc39.noarch.r 1.0 MB/s | 47 kB 00:00 (225/243): perl-overloading-0.02-497.fc39.noarc 289 kB/s | 14 kB 00:00 (226/243): perl-parent-0.241-1.fc39.noarch.rpm 290 kB/s | 14 kB 00:00 (227/243): perl-podlators-5.01-2.fc38.noarch.rp 2.4 MB/s | 121 kB 00:00 (228/243): perl-vars-1.05-497.fc39.noarch.rpm 196 kB/s | 14 kB 00:00 (229/243): perl-libs-5.36.1-497.fc39.ppc64le.rp 7.9 MB/s | 2.2 MB 00:00 (230/243): python3-flaky-3.7.0-10.fc38.noarch.r 449 kB/s | 40 kB 00:00 (231/243): python3-wheel-0.40.0-1.fc39.noarch.r 2.0 MB/s | 150 kB 00:00 (232/243): vim-filesystem-9.0.1649-1.fc39.noarc 303 kB/s | 18 kB 00:00 (233/243): rhash-1.4.3-2.fc38.ppc64le.rpm 2.1 MB/s | 206 kB 00:00 (234/243): xkbcomp-1.4.6-5.fc38.ppc64le.rpm 1.3 MB/s | 107 kB 00:00 (235/243): xorg-x11-proto-devel-2023.2-1.fc39.n 2.2 MB/s | 262 kB 00:00 (236/243): xorg-x11-server-Xvfb-1.20.14-23.fc39 8.1 MB/s | 1.0 MB 00:00 (237/243): xorg-x11-server-common-1.20.14-23.fc 508 kB/s | 35 kB 00:00 (238/243): xkeyboard-config-2.39-1.fc39.noarch. 3.8 MB/s | 907 kB 00:00 (239/243): xorg-x11-xauth-1.1.2-3.fc38.ppc64le. 670 kB/s | 39 kB 00:00 (240/243): zlib-devel-1.2.13-3.fc38.ppc64le.rpm 1.2 MB/s | 45 kB 00:00 (241/243): emacs-filesystem-28.2-7.fc38.noarch. 109 kB/s | 7.9 kB 00:00 (242/243): annobin-docs-12.14-1.fc38.noarch.rpm 966 kB/s | 94 kB 00:00 (243/243): annobin-plugin-gcc-12.14-1.fc38.ppc6 4.4 MB/s | 895 kB 00:00 -------------------------------------------------------------------------------- Total 21 MB/s | 122 MB 00:05 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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perl-File-Temp-1:0.231.100-490.fc38.noarch 160/243 Verifying : perl-File-stat-1.12-497.fc39.noarch 161/243 Verifying : perl-Getopt-Long-1:2.54-2.fc38.noarch 162/243 Verifying : perl-Getopt-Std-1.13-497.fc39.noarch 163/243 Verifying : perl-HTTP-Tiny-0.086-1.fc39.noarch 164/243 Verifying : perl-IO-1.50-497.fc39.ppc64le 165/243 Verifying : perl-IPC-Open3-1.22-497.fc39.noarch 166/243 Verifying : perl-MIME-Base64-3.16-490.fc38.ppc64le 167/243 Verifying : perl-POSIX-2.03-497.fc39.ppc64le 168/243 Verifying : perl-PathTools-3.89-1.fc39.ppc64le 169/243 Verifying : perl-Pod-Escapes-1:1.07-490.fc38.noarch 170/243 Verifying : perl-Pod-Perldoc-3.28.01-491.fc38.noarch 171/243 Verifying : perl-Pod-Simple-1:3.45-2.fc39.noarch 172/243 Verifying : perl-Pod-Usage-4:2.03-4.fc38.noarch 173/243 Verifying : perl-Scalar-List-Utils-5:1.63-491.fc39.ppc64le 174/243 Verifying : perl-SelectSaver-1.02-497.fc39.noarch 175/243 Verifying : perl-Socket-4:2.037-1.fc39.ppc64le 176/243 Verifying : perl-Storable-1:3.32-1.fc39.ppc64le 177/243 Verifying : perl-Symbol-1.09-497.fc39.noarch 178/243 Verifying : perl-Term-ANSIColor-5.01-491.fc38.noarch 179/243 Verifying : perl-Term-Cap-1.18-1.fc39.noarch 180/243 Verifying : perl-Text-ParseWords-3.31-490.fc38.noarch 181/243 Verifying : perl-Text-Tabs+Wrap-2023.0511-1.fc39.noarch 182/243 Verifying : perl-Time-Local-2:1.350-1.fc39.noarch 183/243 Verifying : perl-constant-1.33-492.fc39.noarch 184/243 Verifying : perl-if-0.61.000-497.fc39.noarch 185/243 Verifying : perl-interpreter-4:5.36.1-497.fc39.ppc64le 186/243 Verifying : perl-libs-4:5.36.1-497.fc39.ppc64le 187/243 Verifying : perl-locale-1.10-497.fc39.noarch 188/243 Verifying : perl-macros-4:5.36.1-497.fc39.noarch 189/243 Verifying : perl-mro-1.26-497.fc39.ppc64le 190/243 Verifying : perl-overload-1.35-497.fc39.noarch 191/243 Verifying : perl-overloading-0.02-497.fc39.noarch 192/243 Verifying : perl-parent-1:0.241-1.fc39.noarch 193/243 Verifying : perl-podlators-1:5.01-2.fc38.noarch 194/243 Verifying : perl-vars-1.05-497.fc39.noarch 195/243 Verifying : pixman-0.42.2-1.fc39.ppc64le 196/243 Verifying : pyproject-rpm-macros-1.9.0-1.fc39.noarch 197/243 Verifying : python-pip-wheel-23.1.2-1.fc39.noarch 198/243 Verifying : python-rpm-macros-3.11-10.fc39.noarch 199/243 Verifying : python-setuptools-wheel-67.7.2-2.fc39.noarch 200/243 Verifying : python3-3.11.4-1.fc39.ppc64le 201/243 Verifying : python3-appdirs-1.4.4-8.fc38.noarch 202/243 Verifying : python3-brotli-1.0.9-11.fc38.ppc64le 203/243 Verifying : python3-cairo-1.23.0-2.fc38.ppc64le 204/243 Verifying : python3-cycler-0.11.0-7.fc38.noarch 205/243 Verifying : python3-dateutil-1:2.8.2-6.fc39.noarch 206/243 Verifying : python3-devel-3.11.4-1.fc39.ppc64le 207/243 Verifying : python3-flaky-3.7.0-10.fc38.noarch 208/243 Verifying : python3-fs-2.4.16-2.fc39.noarch 209/243 Verifying : python3-kiwisolver-1.4.4-7.fc38.ppc64le 210/243 Verifying : python3-libs-3.11.4-1.fc39.ppc64le 211/243 Verifying : python3-lxml-4.9.2-5.fc39.ppc64le 212/243 Verifying : python3-munkres-1.1.2-14.fc38.noarch 213/243 Verifying : python3-numpy-1:1.24.3-1.fc39.ppc64le 214/243 Verifying : python3-numpy-f2py-1:1.24.3-1.fc39.ppc64le 215/243 Verifying : python3-olefile-0.46-19.fc38.noarch 216/243 Verifying : python3-packaging-23.1-1.fc39.noarch 217/243 Verifying : python3-pillow-9.5.0-1.fc39.ppc64le 218/243 Verifying : python3-pillow-tk-9.5.0-1.fc39.ppc64le 219/243 Verifying : python3-pyparsing-3.0.9-7.fc39.noarch 220/243 Verifying : python3-rpm-generators-14-6.fc39.noarch 221/243 Verifying : python3-rpm-macros-3.11-10.fc39.noarch 222/243 Verifying : python3-scipy-1.10.1-2.fc39.ppc64le 223/243 Verifying : python3-setuptools-67.7.2-2.fc39.noarch 224/243 Verifying : python3-six-1.16.0-9.fc38.noarch 225/243 Verifying : python3-tkinter-3.11.4-1.fc39.ppc64le 226/243 Verifying : python3-wheel-1:0.40.0-1.fc39.noarch 227/243 Verifying : rhash-1.4.3-2.fc38.ppc64le 228/243 Verifying : tcl-1:8.6.12-4.fc39.ppc64le 229/243 Verifying : tk-1:8.6.12-4.fc38.ppc64le 230/243 Verifying : vim-filesystem-2:9.0.1649-1.fc39.noarch 231/243 Verifying : xkbcomp-1.4.6-5.fc38.ppc64le 232/243 Verifying : xkeyboard-config-2.39-1.fc39.noarch 233/243 Verifying : xml-common-0.6.3-60.fc38.noarch 234/243 Verifying : xorg-x11-proto-devel-2023.2-1.fc39.noarch 235/243 Verifying : xorg-x11-server-Xvfb-1.20.14-23.fc39.ppc64le 236/243 Verifying : xorg-x11-server-common-1.20.14-23.fc39.ppc64le 237/243 Verifying : xorg-x11-xauth-1:1.1.2-3.fc38.ppc64le 238/243 Verifying : zlib-devel-1.2.13-3.fc38.ppc64le 239/243 Verifying : freetype-2.13.0-2.fc38.ppc64le 240/243 Verifying : annobin-docs-12.14-1.fc38.noarch 241/243 Verifying : annobin-plugin-gcc-12.14-1.fc38.ppc64le 242/243 Verifying : emacs-filesystem-1:28.2-7.fc38.noarch 243/243 Installed: annobin-docs-12.14-1.fc38.noarch annobin-plugin-gcc-12.14-1.fc38.ppc64le boost-1.81.0-1.fc39.ppc64le boost-atomic-1.81.0-1.fc39.ppc64le boost-chrono-1.81.0-1.fc39.ppc64le boost-container-1.81.0-1.fc39.ppc64le boost-context-1.81.0-1.fc39.ppc64le boost-contract-1.81.0-1.fc39.ppc64le boost-coroutine-1.81.0-1.fc39.ppc64le boost-date-time-1.81.0-1.fc39.ppc64le boost-devel-1.81.0-1.fc39.ppc64le boost-fiber-1.81.0-1.fc39.ppc64le boost-filesystem-1.81.0-1.fc39.ppc64le boost-graph-1.81.0-1.fc39.ppc64le boost-iostreams-1.81.0-1.fc39.ppc64le boost-json-1.81.0-1.fc39.ppc64le boost-locale-1.81.0-1.fc39.ppc64le boost-log-1.81.0-1.fc39.ppc64le boost-math-1.81.0-1.fc39.ppc64le boost-nowide-1.81.0-1.fc39.ppc64le boost-numpy3-1.81.0-1.fc39.ppc64le boost-program-options-1.81.0-1.fc39.ppc64le boost-python3-1.81.0-1.fc39.ppc64le boost-random-1.81.0-1.fc39.ppc64le boost-regex-1.81.0-1.fc39.ppc64le boost-serialization-1.81.0-1.fc39.ppc64le boost-stacktrace-1.81.0-1.fc39.ppc64le boost-system-1.81.0-1.fc39.ppc64le boost-test-1.81.0-1.fc39.ppc64le boost-thread-1.81.0-1.fc39.ppc64le boost-timer-1.81.0-1.fc39.ppc64le boost-type_erasure-1.81.0-1.fc39.ppc64le boost-wave-1.81.0-1.fc39.ppc64le cairo-1.17.8-4.fc39.ppc64le cmake-3.27.0~rc3-1.fc39.ppc64le cmake-data-3.27.0~rc3-1.fc39.noarch cmake-filesystem-3.27.0~rc3-1.fc39.ppc64le cmake-rpm-macros-3.27.0~rc3-1.fc39.noarch cpp-13.1.1-4.fc39.ppc64le dejavu-sans-fonts-2.37-20.fc38.noarch emacs-filesystem-1:28.2-7.fc38.noarch expat-2.5.0-2.fc38.ppc64le flexiblas-3.3.1-3.fc39.ppc64le flexiblas-netlib-3.3.1-3.fc39.ppc64le flexiblas-openblas-openmp-3.3.1-3.fc39.ppc64le fontconfig-2.14.2-3.fc39.ppc64le fonts-filesystem-1:2.0.5-11.fc38.noarch freeglut-3.4.0-3.fc39.ppc64le freeglut-devel-3.4.0-3.fc39.ppc64le freetype-2.13.0-2.fc38.ppc64le fribidi-1.0.13-1.fc39.ppc64le gc-8.2.2-3.fc38.ppc64le gcc-13.1.1-4.fc39.ppc64le gcc-c++-13.1.1-4.fc39.ppc64le gcc-plugin-annobin-13.1.1-4.fc39.ppc64le gl-manpages-1.1-26.20190306.fc38.noarch glib2-2.76.3-1.fc39.ppc64le glibc-devel-2.37.9000-14.fc39.ppc64le gnutls-3.8.0-6.fc39.ppc64le google-noto-fonts-common-20230601-3.fc39.noarch google-noto-sans-vf-fonts-20230601-3.fc39.noarch graphite2-1.3.14-11.fc38.ppc64le groff-base-1.22.4-11.fc38.ppc64le guile22-2.2.7-8.fc39.ppc64le harfbuzz-7.3.0-1.fc39.ppc64le jbigkit-libs-2.1-25.fc38.ppc64le jsoncpp-1.9.5-4.fc38.ppc64le kernel-headers-6.4.0-1.fc39.ppc64le langpacks-core-font-en-3.0-34.fc39.noarch lcms2-2.15-1.fc39.ppc64le libICE-1.0.10-10.fc38.ppc64le libICE-devel-1.0.10-10.fc38.ppc64le libSM-1.2.3-12.fc38.ppc64le libSM-devel-1.2.3-12.fc38.ppc64le libX11-1.8.6-1.fc39.ppc64le libX11-common-1.8.6-1.fc39.noarch libX11-devel-1.8.6-1.fc39.ppc64le libX11-xcb-1.8.6-1.fc39.ppc64le libXau-1.0.11-2.fc38.ppc64le libXau-devel-1.0.11-2.fc38.ppc64le libXdmcp-1.1.3-10.fc38.ppc64le libXext-1.3.5-2.fc38.ppc64le libXext-devel-1.3.5-2.fc38.ppc64le libXfixes-6.0.0-5.fc38.ppc64le libXfixes-devel-6.0.0-5.fc38.ppc64le libXfont2-2.0.3-14.fc38.ppc64le libXft-2.3.8-2.fc39.ppc64le libXi-1.8.1-1.fc39.ppc64le libXi-devel-1.8.1-1.fc39.ppc64le libXmu-1.1.4-2.fc38.ppc64le libXmu-devel-1.1.4-2.fc38.ppc64le libXrender-0.9.11-2.fc38.ppc64le libXt-1.2.1-4.fc38.ppc64le libXt-devel-1.2.1-4.fc38.ppc64le libXxf86vm-1.1.5-2.fc38.ppc64le libasan-13.1.1-4.fc39.ppc64le libatomic-13.1.1-4.fc39.ppc64le libb2-0.98.1-8.fc38.ppc64le libdrm-2.4.114-2.fc38.ppc64le libdrm-devel-2.4.114-2.fc38.ppc64le libfontenc-1.1.6-2.fc38.ppc64le libgfortran-13.1.1-4.fc39.ppc64le libglvnd-1:1.6.0-2.fc38.ppc64le libglvnd-core-devel-1:1.6.0-2.fc38.ppc64le libglvnd-devel-1:1.6.0-2.fc38.ppc64le libglvnd-egl-1:1.6.0-2.fc38.ppc64le libglvnd-gles-1:1.6.0-2.fc38.ppc64le libglvnd-glx-1:1.6.0-2.fc38.ppc64le libglvnd-opengl-1:1.6.0-2.fc38.ppc64le libicu-72.1-2.fc38.ppc64le libicu-devel-72.1-2.fc38.ppc64le libimagequant-4.0.1-4.fc39.ppc64le libjpeg-turbo-2.1.4-2.fc38.ppc64le libmpc-1.3.1-2.fc38.ppc64le libpng-2:1.6.37-14.fc38.ppc64le libqhull_r-1:7.2.1-12.fc38.ppc64le libquadmath-13.1.1-4.fc39.ppc64le libraqm-0.8.0-4.fc38.ppc64le libstdc++-devel-13.1.1-4.fc39.ppc64le libtiff-4.4.0-5.fc38.ppc64le libtiff-devel-4.4.0-5.fc38.ppc64le libtool-ltdl-2.4.7-6.fc38.ppc64le libubsan-13.1.1-4.fc39.ppc64le libuv-1:1.45.0-2.fc39.ppc64le libwayland-client-1.22.0-1.fc39.ppc64le libwayland-server-1.22.0-1.fc39.ppc64le libwebp-1.3.0-2.fc38.ppc64le libxcb-1.13.1-11.fc38.ppc64le libxcb-devel-1.13.1-11.fc38.ppc64le libxcrypt-devel-4.4.35-1.fc39.ppc64le libxkbfile-1.1.1-2.fc38.ppc64le libxshmfence-1.3-12.fc38.ppc64le libxslt-1.1.38-1.fc39.ppc64le make-1:4.4.1-1.fc39.ppc64le mesa-libEGL-23.1.2-1.fc39.ppc64le mesa-libGL-23.1.2-1.fc39.ppc64le mesa-libGL-devel-23.1.2-1.fc39.ppc64le mesa-libGLU-9.0.1-8.fc38.ppc64le mesa-libGLU-devel-9.0.1-8.fc38.ppc64le mesa-libgbm-23.1.2-1.fc39.ppc64le mesa-libglapi-23.1.2-1.fc39.ppc64le mpdecimal-2.5.1-6.fc38.ppc64le ncurses-6.4-4.20230520.fc39.ppc64le nettle-3.9.1-1.fc39.ppc64le openblas-0.3.21-4.fc38.ppc64le openblas-openmp-0.3.21-4.fc38.ppc64le openjpeg2-2.5.0-3.fc38.ppc64le perl-Carp-1.54-1.fc39.noarch perl-Class-Struct-0.66-497.fc39.noarch perl-DynaLoader-1.52-497.fc39.ppc64le perl-Encode-4:3.19-493.fc38.ppc64le perl-Errno-1.36-497.fc39.ppc64le perl-Exporter-5.77-490.fc38.noarch perl-Fcntl-1.15-497.fc39.ppc64le perl-File-Basename-2.85-497.fc39.noarch perl-File-Path-2.18-490.fc38.noarch perl-File-Temp-1:0.231.100-490.fc38.noarch perl-File-stat-1.12-497.fc39.noarch perl-Getopt-Long-1:2.54-2.fc38.noarch perl-Getopt-Std-1.13-497.fc39.noarch perl-HTTP-Tiny-0.086-1.fc39.noarch perl-IO-1.50-497.fc39.ppc64le perl-IPC-Open3-1.22-497.fc39.noarch perl-MIME-Base64-3.16-490.fc38.ppc64le perl-POSIX-2.03-497.fc39.ppc64le perl-PathTools-3.89-1.fc39.ppc64le perl-Pod-Escapes-1:1.07-490.fc38.noarch perl-Pod-Perldoc-3.28.01-491.fc38.noarch perl-Pod-Simple-1:3.45-2.fc39.noarch perl-Pod-Usage-4:2.03-4.fc38.noarch perl-Scalar-List-Utils-5:1.63-491.fc39.ppc64le perl-SelectSaver-1.02-497.fc39.noarch perl-Socket-4:2.037-1.fc39.ppc64le perl-Storable-1:3.32-1.fc39.ppc64le perl-Symbol-1.09-497.fc39.noarch perl-Term-ANSIColor-5.01-491.fc38.noarch perl-Term-Cap-1.18-1.fc39.noarch perl-Text-ParseWords-3.31-490.fc38.noarch perl-Text-Tabs+Wrap-2023.0511-1.fc39.noarch perl-Time-Local-2:1.350-1.fc39.noarch perl-constant-1.33-492.fc39.noarch perl-if-0.61.000-497.fc39.noarch perl-interpreter-4:5.36.1-497.fc39.ppc64le perl-libs-4:5.36.1-497.fc39.ppc64le perl-locale-1.10-497.fc39.noarch perl-macros-4:5.36.1-497.fc39.noarch perl-mro-1.26-497.fc39.ppc64le perl-overload-1.35-497.fc39.noarch perl-overloading-0.02-497.fc39.noarch perl-parent-1:0.241-1.fc39.noarch perl-podlators-1:5.01-2.fc38.noarch perl-vars-1.05-497.fc39.noarch pixman-0.42.2-1.fc39.ppc64le pybind11-devel-2.10.4-3.fc39.ppc64le pyproject-rpm-macros-1.9.0-1.fc39.noarch python-pip-wheel-23.1.2-1.fc39.noarch python-rpm-macros-3.11-10.fc39.noarch python-setuptools-wheel-67.7.2-2.fc39.noarch python3-3.11.4-1.fc39.ppc64le python3-appdirs-1.4.4-8.fc38.noarch python3-brotli-1.0.9-11.fc38.ppc64le python3-cairo-1.23.0-2.fc38.ppc64le python3-contourpy-1.0.7-4.fc39~bootstrap.ppc64le python3-cycler-0.11.0-7.fc38.noarch python3-dateutil-1:2.8.2-6.fc39.noarch python3-devel-3.11.4-1.fc39.ppc64le python3-flaky-3.7.0-10.fc38.noarch python3-fonttools-4.40.0-1.fc39.ppc64le python3-fs-2.4.16-2.fc39.noarch python3-kiwisolver-1.4.4-7.fc38.ppc64le python3-libs-3.11.4-1.fc39.ppc64le python3-lxml-4.9.2-5.fc39.ppc64le python3-matplotlib-3.7.1-4.fc39.ppc64le python3-matplotlib-data-3.7.1-4.fc39.noarch python3-matplotlib-data-fonts-3.7.1-4.fc39.noarch python3-matplotlib-tk-3.7.1-4.fc39.ppc64le python3-munkres-1.1.2-14.fc38.noarch python3-numpy-1:1.24.3-1.fc39.ppc64le python3-numpy-f2py-1:1.24.3-1.fc39.ppc64le python3-olefile-0.46-19.fc38.noarch python3-packaging-23.1-1.fc39.noarch python3-pillow-9.5.0-1.fc39.ppc64le python3-pillow-tk-9.5.0-1.fc39.ppc64le python3-pyparsing-3.0.9-7.fc39.noarch python3-rpm-generators-14-6.fc39.noarch python3-rpm-macros-3.11-10.fc39.noarch python3-scipy-1.10.1-2.fc39.ppc64le python3-setuptools-67.7.2-2.fc39.noarch python3-six-1.16.0-9.fc38.noarch python3-tkinter-3.11.4-1.fc39.ppc64le python3-wheel-1:0.40.0-1.fc39.noarch rhash-1.4.3-2.fc38.ppc64le tcl-1:8.6.12-4.fc39.ppc64le tk-1:8.6.12-4.fc38.ppc64le vim-filesystem-2:9.0.1649-1.fc39.noarch xkbcomp-1.4.6-5.fc38.ppc64le xkeyboard-config-2.39-1.fc39.noarch xml-common-0.6.3-60.fc38.noarch xorg-x11-proto-devel-2023.2-1.fc39.noarch xorg-x11-server-Xvfb-1.20.14-23.fc39.ppc64le xorg-x11-server-common-1.20.14-23.fc39.ppc64le xorg-x11-xauth-1:1.1.2-3.fc38.ppc64le zlib-devel-1.2.13-3.fc38.ppc64le Complete! Finish: build setup for smoldyn-2.67.3-5.fc39.src.rpm Start: rpmbuild smoldyn-2.67.3-5.fc39.src.rpm warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1687824000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.BWj0AN + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Smoldyn-2.67.3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Smoldyn-2.67.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd Smoldyn-2.67.3 + /usr/bin/mkdir -p SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (smoldyn-fix_libpaths.patch):' Patch #0 (smoldyn-fix_libpaths.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_libpaths --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 253 (offset 44 lines). Hunk #2 succeeded at 269 (offset 44 lines). Hunk #3 succeeded at 433 (offset 44 lines). Hunk #4 succeeded at 510 (offset 47 lines). Patch #1 (smoldyn-freeglut.patch): + echo 'Patch #1 (smoldyn-freeglut.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .freeglut --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 365 (offset 39 lines). Patch #2 (smoldyn-create_soname.patch): + echo 'Patch #2 (smoldyn-create_soname.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .create_soname --fuzz=0 patching file CMakeLists.txt Hunk #2 succeeded at 517 (offset 47 lines). Patch #3 (smoldyn-avoid_automatic_wheel.patch): + echo 'Patch #3 (smoldyn-avoid_automatic_wheel.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .avoid_automatic_wheel --fuzz=0 patching file source/python/CMakeLists.txt Hunk #1 succeeded at 20 (offset -3 lines). Patch #4 (smoldyn-bug121.patch): + echo 'Patch #4 (smoldyn-bug121.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug121 --fuzz=0 patching file tests/test_api.py Patch #5 (smoldyn-bug123.patch): + echo 'Patch #5 (smoldyn-bug123.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug123 --fuzz=0 patching file tests/test_api.py + rm -rf source/MSVClibs + rm -rf source/pybind11 + rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake + rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen + rm -rf source/NextSubVolume/boost_include + rm -f 'source/vtk/*' + find . -type f -name '*.h' -exec chmod 0644 '{}' ';' + find . -type f -name '*.c' -exec chmod 0644 '{}' ';' + find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';' + sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt + cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt + cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt + find -name '*.pyc' -delete + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.XbMPYD + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -B build -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DSMOLDYN_VERSION:STRING=2.67.3 -DSMOLDYN_VERSION_MAJOR:STRING=2 -DOPTION_TARGET_LIBSMOLDYN:BOOL=ON -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=ON -DPYBIND11_FINDPYTHON:BOOL=ON -Dpybind11_DIR:PATH=/usr/share/cmake/pybind11 -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -DOPTION_EXAMPLES:BOOL=OFF -DOPTION_DOCS:BOOL=OFF -- The CXX compiler identification is GNU 13.1.1 -- The C compiler identification is GNU 13.1.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Smoldyn version is set to: '2.67.3' -- Compiling for Smoldyn: ON -- Compiling for Libsmoldyn: ON -- Option to compile Smoldyn for VCell: OFF -- Option to cross-compile for Windows using MinGW: OFF -- Option to include NextSubvolume: ON -- Option to include VTK: OFF -- Option to compile with static libraries: OFF -- Option to include OpenGL support: ON -- Option to include LibTiff: ON -- Option to include Zlib: ON -- Option to incude Python module: ON -- Option to run Libsmoldyn examples: OFF -- Option to build documentation: OFF -- Performing Test C_FLAG_EXISTS -- Performing Test C_FLAG_EXISTS - Success -- Performing Test CXX_FLAG_EXISTS -- Performing Test CXX_FLAG_EXISTS - Success -- [COMPILER] Adding -Wno-unused-parameter -- Build type: Release -- Compiling on a Linux computer -- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' -- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl' -- Found OpenGL: /usr/lib64/libOpenGL.so -- OpenGL found: '/usr/include', '/usr/lib64/libGL.so;/usr/lib64/libGLU.so' -- Found GLUT: /usr/lib64/libglut.so -- Found TIFF: /usr/lib64/libtiff.so (found version "4.4.0") -- Found Libtiff: '/usr/include', '/usr/lib64/libtiff.so' -- Found Zlib: '/usr/include', '/usr/lib64/libz.so' -- Boost headers found: '/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include' -- Found Python3: /usr/bin/python3.11 (found version "3.11.4") found components: Interpreter Development Development.Module Development.Embed -- Found pybind11: /usr/include (found version "2.10.4") -- [TEST] Found 15 test scripts -- Configuring done (2.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/Smoldyn-2.67.3/build + /usr/bin/make -O -j5 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 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'/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 2%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o -MF CMakeFiles/nsv.dir/Species.cpp.o.d -o CMakeFiles/nsv.dir/Species.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 3%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o -MF CMakeFiles/nsv.dir/ReactionEquation.cpp.o.d -o CMakeFiles/nsv.dir/ReactionEquation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/ReactionEquation.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 8%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o -MF CMakeFiles/nsv.dir/Io.cpp.o.d -o CMakeFiles/nsv.dir/Io.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Io.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 2%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o -MF CMakeFiles/nsv.dir/StructuredGrid.cpp.o.d -o CMakeFiles/nsv.dir/StructuredGrid.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/StructuredGrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 9%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o -MF CMakeFiles/nsv.dir/Geometry.cpp.o.d -o CMakeFiles/nsv.dir/Geometry.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Geometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 12%] Building C object source/libSteve/CMakeFiles/Steve.dir/List.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/List.c.o -MF CMakeFiles/Steve.dir/List.c.o.d -o CMakeFiles/Steve.dir/List.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/List.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 6%] Building C object source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -MF CMakeFiles/nsv.dir/Kairos.cpp.o.d -o CMakeFiles/nsv.dir/Kairos.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Kairos.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 13%] Building C object source/libSteve/CMakeFiles/Steve.dir/math2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/math2.c.o -MF CMakeFiles/Steve.dir/math2.c.o.d -o CMakeFiles/Steve.dir/math2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/math2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 16%] Building C object source/libSteve/CMakeFiles/Steve.dir/parse.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/parse.c.o -MF CMakeFiles/Steve.dir/parse.c.o.d -o CMakeFiles/Steve.dir/parse.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/parse.c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/parse.c: In function 'Parse_ReadLine': /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/parse.c:371:60: warning: comparison is always true due to limited range of data type [-Wtype-limits] 371 | while((ch=fgetc(pfp->fptr))!=EOF && ch!='\n' && ch!='\r'); | ^~ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 17%] Building C object source/libSteve/CMakeFiles/Steve.dir/queue.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/queue.c.o -MF CMakeFiles/Steve.dir/queue.c.o.d -o CMakeFiles/Steve.dir/queue.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/queue.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 14%] Building C object source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o -MF CMakeFiles/Steve.dir/opengl2.c.o.d -o CMakeFiles/Steve.dir/opengl2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/opengl2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 19%] Building C object source/libSteve/CMakeFiles/Steve.dir/random2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/random2.c.o -MF CMakeFiles/Steve.dir/random2.c.o.d -o CMakeFiles/Steve.dir/random2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 19%] Building C object source/libSteve/CMakeFiles/Steve.dir/Rn.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Rn.c.o -MF CMakeFiles/Steve.dir/Rn.c.o.d -o CMakeFiles/Steve.dir/Rn.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Rn.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 6%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -MF CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o.d -o CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 20%] Building C object source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o -MF CMakeFiles/Steve.dir/RnSort.c.o.d -o CMakeFiles/Steve.dir/RnSort.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/RnSort.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 22%] Building C object source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o -MF CMakeFiles/Steve.dir/rxnparam.c.o.d -o CMakeFiles/Steve.dir/rxnparam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/rxnparam.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 24%] Building C object source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o -MF CMakeFiles/Steve.dir/Sphere.c.o.d -o CMakeFiles/Steve.dir/Sphere.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Sphere.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 23%] Building C object source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o -MF CMakeFiles/Steve.dir/SimCommand.c.o.d -o CMakeFiles/Steve.dir/SimCommand.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SimCommand.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 27%] Building C object source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o -MF CMakeFiles/Steve.dir/SurfaceParam.c.o.d -o CMakeFiles/Steve.dir/SurfaceParam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SurfaceParam.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Building C object source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o -MF CMakeFiles/Steve.dir/SFMT/SFMT.c.o.d -o CMakeFiles/Steve.dir/SFMT/SFMT.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 28%] Building C object source/libSteve/CMakeFiles/Steve.dir/Zn.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Zn.c.o -MF CMakeFiles/Steve.dir/Zn.c.o.d -o CMakeFiles/Steve.dir/Zn.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Zn.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 11%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o -MF CMakeFiles/nsv.dir/nsvc.cpp.o.d -o CMakeFiles/nsv.dir/nsvc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/nsvc.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target nsv make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 25%] Building C object source/libSteve/CMakeFiles/Steve.dir/string2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/string2.c.o -MF CMakeFiles/Steve.dir/string2.c.o.d -o CMakeFiles/Steve.dir/string2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/string2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target Steve make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 32%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 33%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 30%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 35%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 37%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 38%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 40%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 41%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 39%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 46%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 48%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 34%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 45%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 50%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 49%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolreact.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 43%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 54%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 44%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 55%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 51%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 56%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o /usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 59%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 60%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 61%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 66%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 62%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 53%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsurface.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 67%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 71%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 64%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 65%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 75%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 76%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 72%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -MF 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 82%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 83%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -c 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-fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 80%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsurface.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 81%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsurface.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 87%] Linking CXX static library libsmoldyn_static.a /usr/bin/cmake -P CMakeFiles/smoldyn_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsmoldyn_static.a CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib libsmoldyn_static.a make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 87%] Built target smoldyn_static make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 79%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp:27: /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes] /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes] make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 86%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp:15: /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes] /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes] make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 88%] Linking CXX static library lib_pysmoldyn.a cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -P CMakeFiles/_pysmoldyn.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_pysmoldyn.dir/link.txt --verbose=1 /usr/bin/ar qc lib_pysmoldyn.a CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o ../libSteve/CMakeFiles/Steve.dir/Geometry.c.o ../libSteve/CMakeFiles/Steve.dir/List.c.o ../libSteve/CMakeFiles/Steve.dir/math2.c.o ../libSteve/CMakeFiles/Steve.dir/opengl2.c.o ../libSteve/CMakeFiles/Steve.dir/parse.c.o ../libSteve/CMakeFiles/Steve.dir/queue.c.o ../libSteve/CMakeFiles/Steve.dir/random2.c.o ../libSteve/CMakeFiles/Steve.dir/Rn.c.o ../libSteve/CMakeFiles/Steve.dir/RnSort.c.o ../libSteve/CMakeFiles/Steve.dir/rxnparam.c.o ../libSteve/CMakeFiles/Steve.dir/SimCommand.c.o ../libSteve/CMakeFiles/Steve.dir/Sphere.c.o ../libSteve/CMakeFiles/Steve.dir/string2.c.o ../libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o ../libSteve/CMakeFiles/Steve.dir/Zn.c.o ../libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o ../NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib lib_pysmoldyn.a make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 88%] Built target _pysmoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 70%] Linking CXX shared library libsmoldyn_shared.so /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--dependency-file,CMakeFiles/smoldyn_shared.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsmoldyn_shared.so.2 -o libsmoldyn_shared.so.2.67.3 CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so /usr/bin/cmake -E cmake_symlink_library libsmoldyn_shared.so.2.67.3 libsmoldyn_shared.so.2 libsmoldyn_shared.so /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv' 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 93%] Built target smoldyn_shared make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 95%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -MF CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o.d -o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 96%] Linking CXX executable smoldyn /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/smoldyn.dir/link.d CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn libsmoldyn_shared.so.2.67.3 /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 96%] Built target smoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -MD -MT source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -MF CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o.d -o CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/CallbackFunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -MD -MT source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o -MF CMakeFiles/_smoldyn.dir/Command.cpp.o.d -o CMakeFiles/_smoldyn.dir/Command.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Command.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 92%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -MD -MT source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o -MF CMakeFiles/_smoldyn.dir/Simulation.cpp.o.d -o CMakeFiles/_smoldyn.dir/Simulation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Simulation.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/module.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -MD -MT source/python/CMakeFiles/_smoldyn.dir/module.cpp.o -MF CMakeFiles/_smoldyn.dir/module.cpp.o.d -o CMakeFiles/_smoldyn.dir/module.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/module.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Linking CXX shared module /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-powerpc64le-linux-gnu.so cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--dependency-file,CMakeFiles/_smoldyn.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-powerpc64le-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o lib_pysmoldyn.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/strip /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-powerpc64le-linux-gnu.so /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1044:16: warning: type 'struct simstruct' violates the C++ One Definition Rule [-Wodr] 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a different type is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1104:19: note: the first difference of corresponding definitions is field 'callbacks' 1104 | CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback. | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a type with different number of fields is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv' 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Built target _smoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target copy_python_tree make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.11 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build running bdist_wheel running build running build_py creating build creating build/lib.linux-ppc64le-cpython-311 creating build/lib.linux-ppc64le-cpython-311/smoldyn copying smoldyn/__init__.py -> build/lib.linux-ppc64le-cpython-311/smoldyn copying smoldyn/__main__.py -> build/lib.linux-ppc64le-cpython-311/smoldyn copying smoldyn/smoldyn.py -> build/lib.linux-ppc64le-cpython-311/smoldyn copying smoldyn/types.py -> build/lib.linux-ppc64le-cpython-311/smoldyn copying smoldyn/utils.py -> build/lib.linux-ppc64le-cpython-311/smoldyn creating build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/__init__.py -> build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/__main__.py -> build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/_version.py -> build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/combine.py -> build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/data_model.py -> build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/utils.py -> build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators copying smoldyn/_smoldyn.cpython-311-powerpc64le-linux-gnu.so -> build/lib.linux-ppc64le-cpython-311/smoldyn running build_ext installing to build/bdist.linux-ppc64le/wheel running install running install_lib creating build/bdist.linux-ppc64le creating build/bdist.linux-ppc64le/wheel creating build/bdist.linux-ppc64le/wheel/smoldyn copying build/lib.linux-ppc64le-cpython-311/smoldyn/_smoldyn.cpython-311-powerpc64le-linux-gnu.so -> build/bdist.linux-ppc64le/wheel/smoldyn creating build/bdist.linux-ppc64le/wheel/smoldyn/biosimulators copying build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators/utils.py -> build/bdist.linux-ppc64le/wheel/smoldyn/biosimulators copying build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators/data_model.py -> build/bdist.linux-ppc64le/wheel/smoldyn/biosimulators copying build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators/combine.py -> build/bdist.linux-ppc64le/wheel/smoldyn/biosimulators copying build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators/_version.py -> build/bdist.linux-ppc64le/wheel/smoldyn/biosimulators copying build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators/__main__.py -> build/bdist.linux-ppc64le/wheel/smoldyn/biosimulators copying build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators/__init__.py -> build/bdist.linux-ppc64le/wheel/smoldyn/biosimulators copying build/lib.linux-ppc64le-cpython-311/smoldyn/utils.py -> build/bdist.linux-ppc64le/wheel/smoldyn copying build/lib.linux-ppc64le-cpython-311/smoldyn/types.py -> build/bdist.linux-ppc64le/wheel/smoldyn copying build/lib.linux-ppc64le-cpython-311/smoldyn/smoldyn.py -> build/bdist.linux-ppc64le/wheel/smoldyn copying build/lib.linux-ppc64le-cpython-311/smoldyn/__main__.py -> build/bdist.linux-ppc64le/wheel/smoldyn copying build/lib.linux-ppc64le-cpython-311/smoldyn/__init__.py -> build/bdist.linux-ppc64le/wheel/smoldyn running install_egg_info running egg_info creating smoldyn.egg-info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt writing manifest file 'smoldyn.egg-info/SOURCES.txt' reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-ppc64le/wheel/smoldyn-2.67.3-py3.11.egg-info running install_scripts creating build/bdist.linux-ppc64le/wheel/smoldyn-2.67.3.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp311-cp311-linux_ppc64le.whl' and adding 'build/bdist.linux-ppc64le/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-311-powerpc64le-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.67.3.dist-info/METADATA' adding 'smoldyn-2.67.3.dist-info/WHEEL' adding 'smoldyn-2.67.3.dist-info/top_level.txt' adding 'smoldyn-2.67.3.dist-info/RECORD' removing build/bdist.linux-ppc64le/wheel make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer, pypa/build or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target wheel make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.bPnNEO + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le '!=' / ']' + rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le ++ dirname /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/NextSubVolume/CMakeFiles/nsv.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 9%] Built target nsv /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/libSteve/CMakeFiles/Steve.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target Steve /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn_static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 49%] Built target smoldyn_static /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Built target smoldyn_shared /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 70%] Linking CXX executable smoldyn /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/smoldyn.dir/link.d CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn libsmoldyn_shared.so.2.67.3 /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 71%] Built target smoldyn /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/python/CMakeFiles/_pysmoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Built target _pysmoldyn /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 92%] Linking CXX shared module /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-powerpc64le-linux-gnu.so cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--dependency-file,CMakeFiles/_smoldyn.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-powerpc64le-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o lib_pysmoldyn.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1044:16: warning: type 'struct simstruct' violates the C++ One Definition Rule [-Wodr] 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a different type is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1104:19: note: the first difference of corresponding definitions is field 'callbacks' 1104 | CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback. | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a type with different number of fields is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv' 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/strip /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-powerpc64le-linux-gnu.so make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Built target _smoldyn /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Built target copy_python_tree /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.11 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build running bdist_wheel running build running build_py copying smoldyn/__init__.py -> build/lib.linux-ppc64le-cpython-311/smoldyn copying smoldyn/__main__.py -> build/lib.linux-ppc64le-cpython-311/smoldyn copying smoldyn/smoldyn.py -> build/lib.linux-ppc64le-cpython-311/smoldyn copying smoldyn/types.py -> build/lib.linux-ppc64le-cpython-311/smoldyn copying smoldyn/utils.py -> build/lib.linux-ppc64le-cpython-311/smoldyn copying smoldyn/biosimulators/__init__.py -> build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/__main__.py -> build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/_version.py -> build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/combine.py -> build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/data_model.py -> build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/utils.py -> build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators copying smoldyn/_smoldyn.cpython-311-powerpc64le-linux-gnu.so -> build/lib.linux-ppc64le-cpython-311/smoldyn running build_ext /usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer, pypa/build or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() installing to build/bdist.linux-ppc64le/wheel running install running install_lib creating build/bdist.linux-ppc64le/wheel creating build/bdist.linux-ppc64le/wheel/smoldyn copying build/lib.linux-ppc64le-cpython-311/smoldyn/_smoldyn.cpython-311-powerpc64le-linux-gnu.so -> build/bdist.linux-ppc64le/wheel/smoldyn copying build/lib.linux-ppc64le-cpython-311/smoldyn/utils.py -> build/bdist.linux-ppc64le/wheel/smoldyn copying build/lib.linux-ppc64le-cpython-311/smoldyn/types.py -> build/bdist.linux-ppc64le/wheel/smoldyn copying build/lib.linux-ppc64le-cpython-311/smoldyn/smoldyn.py -> build/bdist.linux-ppc64le/wheel/smoldyn copying build/lib.linux-ppc64le-cpython-311/smoldyn/__main__.py -> build/bdist.linux-ppc64le/wheel/smoldyn copying build/lib.linux-ppc64le-cpython-311/smoldyn/__init__.py -> build/bdist.linux-ppc64le/wheel/smoldyn creating build/bdist.linux-ppc64le/wheel/smoldyn/biosimulators copying build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators/utils.py -> build/bdist.linux-ppc64le/wheel/smoldyn/biosimulators copying build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators/data_model.py -> build/bdist.linux-ppc64le/wheel/smoldyn/biosimulators copying build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators/combine.py -> build/bdist.linux-ppc64le/wheel/smoldyn/biosimulators copying build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators/_version.py -> build/bdist.linux-ppc64le/wheel/smoldyn/biosimulators copying build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators/__main__.py -> build/bdist.linux-ppc64le/wheel/smoldyn/biosimulators copying build/lib.linux-ppc64le-cpython-311/smoldyn/biosimulators/__init__.py -> build/bdist.linux-ppc64le/wheel/smoldyn/biosimulators running install_egg_info running egg_info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-ppc64le/wheel/smoldyn-2.67.3-py3.11.egg-info running install_scripts creating build/bdist.linux-ppc64le/wheel/smoldyn-2.67.3.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp311-cp311-linux_ppc64le.whl' and adding 'build/bdist.linux-ppc64le/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-311-powerpc64le-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.67.3.dist-info/METADATA' adding 'smoldyn-2.67.3.dist-info/WHEEL' adding 'smoldyn-2.67.3.dist-info/top_level.txt' adding 'smoldyn-2.67.3.dist-info/RECORD' removing build/bdist.linux-ppc64le/wheel make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target wheel make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/bin/smoldyn -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/lib64/libsmoldyn_shared.so.2.67.3 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/lib64/libsmoldyn_shared.so.2 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/lib64/libsmoldyn_shared.so -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/lib64/libsmoldyn_static.a -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/include/smoldyn/libsmoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/include/smoldyn/smoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/include/smoldyn/smoldynconfigure.h make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' ~/build/BUILD/Smoldyn-2.67.3/build/py ~/build/BUILD/Smoldyn-2.67.3 + pushd build/py + mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/lib64/python3.11/site-packages + cp -a smoldyn smoldyn.egg-info /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/lib64/python3.11/site-packages/ ~/build/BUILD/Smoldyn-2.67.3 + popd + /usr/bin/find-debuginfo -j5 --strict-build-id -m -i --build-id-seed 2.67.3-5.fc39 --unique-debug-suffix -2.67.3-5.fc39.ppc64le --unique-debug-src-base smoldyn-2.67.3-5.fc39.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/Smoldyn-2.67.3 extracting debug info from /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/lib64/libsmoldyn_shared.so.2.67.3 extracting debug info from /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/bin/smoldyn /usr/bin/gdb.minimal /usr/bin/gdb.minimal original debug info size: 5440kB, size after compression: 5056kB /usr/bin/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. 3516 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j5 Bytecompiling .py files below /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/lib64/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.SoUXCb + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + cd build + export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/lib64 + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/lib64 + export PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/lib64/python3.11/site-packages + PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/lib64/python3.11/site-packages + xvfb-run ctest -j1 -VV -R 'test_api|test_sanity|test_biosimulator' --output-on-failure --debug /builddir/build/BUILD/cmake-3.27.0-rc3/Source/cmCTest.cxx:424 Here: 424 /builddir/build/BUILD/cmake-3.27.0-rc3/Source/cmCTest.cxx:709 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.27.0-rc3/Source/cmCTest.cxx:436 Here: 436 /builddir/build/BUILD/cmake-3.27.0-rc3/Source/cmCTest.cxx:3036 * Read custom CTest configuration directory: /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/cmake-3.27.0-rc3/Source/cmCTest.cxx:3041 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.cmake /builddir/build/BUILD/cmake-3.27.0-rc3/Source/cmCTest.cxx:3061 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.ctest /builddir/build/BUILD/cmake-3.27.0-rc3/Source/cmCTest.cxx:709 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:408 Test project /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:1783 Constructing a list of tests /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_actions /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_api /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_biosimulators /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_concurrent_simulation /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_connect_func /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_connect_var /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_data_in_array /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_data_outputfile /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_getters /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_issue_118 /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_libsmoldyn /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_multiple_iterations /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_prd_placement /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_sanity /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_sim_from_file /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:1834 Done constructing a list of tests /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:984 Updating test list for fixtures /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:1207 Added 0 tests to meet fixture requirements /builddir/build/BUILD/cmake-3.27.0-rc3/Source/cmCTest.cxx:309 Current_Time: Jun 27 15:12 UTC /builddir/build/BUILD/cmake-3.27.0-rc3/Source/cmCTest.cxx:309 Current_Time: Jun 27 15:12 UTC /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestMultiProcessHandler.cxx:1414 Checking test dependency graph... /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestMultiProcessHandler.cxx:1443 Checking test dependency graph end /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 2 /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:526 Start 2: test_api /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:687 2: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_api.py" /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:695 2: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:703 2: Environment variables: /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:708 2: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:708 2: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.0-rc3/Source/cmCTest.cxx:309 Current_Time: Jun 27 15:12 UTC /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:804 2: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:983 1/3 Test #2: test_api ......................... /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:986 Testing test_api ... /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.32 sec /builddir/build/BUILD/cmake-3.27.0-rc3/Source/cmCTest.cxx:309 Current_Time: Jun 27 15:12 UTC /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 3 /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:526 Start 3: test_biosimulators /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:687 3: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_biosimulators.py" /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:695 3: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:703 3: Environment variables: /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:708 3: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:708 3: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.0-rc3/Source/cmCTest.cxx:309 Current_Time: Jun 27 15:12 UTC /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:804 3: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:39 3: ssssssssssssssssssssssss /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:39 3: ---------------------------------------------------------------------- /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:39 3: Ran 24 tests in 0.000s /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:39 3: /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:39 3: OK (skipped=24) /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:983 2/3 Test #3: test_biosimulators ............... /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:986 Testing test_biosimulators ... /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.35 sec /builddir/build/BUILD/cmake-3.27.0-rc3/Source/cmCTest.cxx:309 Current_Time: Jun 27 15:12 UTC /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 14 /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:526 Start 14: test_sanity /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:687 14: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_sanity.py" /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:695 14: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:703 14: Environment variables: /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:708 14: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:708 14: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.0-rc3/Source/cmCTest.cxx:309 Current_Time: Jun 27 15:12 UTC /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:804 14: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:39 14: Using smoldyn from /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn/__init__.py /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:39 14: test_newcursim /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:39 14: /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:39 14: Testing test_get_err /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:39 14: (, '') /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:983 3/3 Test #14: test_sanity ...................... /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:986 Testing test_sanity ... /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.29 sec /builddir/build/BUILD/cmake-3.27.0-rc3/Source/cmCTest.cxx:309 Current_Time: Jun 27 15:12 UTC /builddir/build/BUILD/cmake-3.27.0-rc3/Source/cmCTest.cxx:309 Current_Time: Jun 27 15:12 UTC /builddir/build/BUILD/cmake-3.27.0-rc3/Source/cmCTest.cxx:309 Current_Time: Jun 27 15:12 UTC /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:447 The following tests passed: /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:452 test_api /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:452 test_biosimulators /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:452 test_sanity /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:613 100% tests passed, 0 tests failed out of 3 /builddir/build/BUILD/cmake-3.27.0-rc3/Source/CTest/cmCTestTestHandler.cxx:629 Total Test time (real) = 0.96 sec + RPM_EC=0 ++ jobs -p + exit 0 Processing files: smoldyn-2.67.3-5.fc39.ppc64le Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.54Qob0 + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/Using-Smoldyn-with-SED-ML-COMBINE-BioSimulators.md /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/README.md /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.67.3-5.fc39 smoldyn(ppc-64) = 2.67.3-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libsmoldyn_shared.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) rtld(GNU_HASH) Processing files: smoldyn-doc-2.67.3-5.fc39.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.wLnPEz + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/BioNetGen /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/CMakeLists.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/Doxyfile.in /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/README.md /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/SmolCrowd /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/SmolEmulate /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/Smoldyn /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/_static /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/build_doxygen /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/conf.py /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/doxygen /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/examples /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/index.rst /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/libSteve /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/python /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/requirements.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/tikz /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/user /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/wrl2smol /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/doc/smoldyn-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: smoldyn-doc = 2.67.3-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-libs-2.67.3-5.fc39.ppc64le Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.kitvXS + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/licenses/smoldyn-libs + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/licenses/smoldyn-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsmoldyn_shared.so.2()(64bit) smoldyn-libs = 2.67.3-5.fc39 smoldyn-libs(ppc-64) = 2.67.3-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: glibc >= 2.37.9000-14 libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) rtld(GNU_HASH) Processing files: smoldyn-libs-devel-2.67.3-5.fc39.ppc64le Provides: smoldyn-libs-devel = 2.67.3-5.fc39 smoldyn-libs-devel(ppc-64) = 2.67.3-5.fc39 smoldyn-libs-static = 0:2.67.3-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsmoldyn_shared.so.2()(64bit) Processing files: python3-smoldyn-2.67.3-5.fc39.ppc64le Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.l7AEbt + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/licenses/python3-smoldyn + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le/usr/share/licenses/python3-smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-smoldyn = 2.67.3-5.fc39 python3-smoldyn = 2.67.3-5.fc39 python3-smoldyn(ppc-64) = 2.67.3-5.fc39 python3.11-smoldyn = 2.67.3-5.fc39 python3.11dist(smoldyn) = 2.67.3 python3dist(smoldyn) = 2.67.3 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: glibc >= 2.37.9000-14 libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) python(abi) = 3.11 rtld(GNU_HASH) Obsoletes: python-smoldyn < 2.67.3-5.fc39 Processing files: smoldyn-debugsource-2.67.3-5.fc39.ppc64le Provides: smoldyn-debugsource = 2.67.3-5.fc39 smoldyn-debugsource(ppc-64) = 2.67.3-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-debuginfo-2.67.3-5.fc39.ppc64le Provides: debuginfo(build-id) = fb1c6d6630385cd60521858fec6a7c500b646420 smoldyn-debuginfo = 2.67.3-5.fc39 smoldyn-debuginfo(ppc-64) = 2.67.3-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(ppc-64) = 2.67.3-5.fc39 Processing files: smoldyn-libs-debuginfo-2.67.3-5.fc39.ppc64le Provides: debuginfo(build-id) = 056664515e708bc04493580ce718f25fe5b704fb libsmoldyn_shared.so.2.67.3-2.67.3-5.fc39.ppc64le.debug()(64bit) smoldyn-libs-debuginfo = 2.67.3-5.fc39 smoldyn-libs-debuginfo(ppc-64) = 2.67.3-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(ppc-64) = 2.67.3-5.fc39 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le Wrote: /builddir/build/RPMS/smoldyn-libs-2.67.3-5.fc39.ppc64le.rpm Wrote: /builddir/build/RPMS/python3-smoldyn-2.67.3-5.fc39.ppc64le.rpm Wrote: /builddir/build/RPMS/smoldyn-2.67.3-5.fc39.ppc64le.rpm Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.67.3-5.fc39.ppc64le.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-devel-2.67.3-5.fc39.ppc64le.rpm Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.67.3-5.fc39.ppc64le.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-debuginfo-2.67.3-5.fc39.ppc64le.rpm Wrote: /builddir/build/RPMS/smoldyn-doc-2.67.3-5.fc39.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.6eOGoY + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + /usr/bin/rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-5.fc39.ppc64le + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Gt6xGG + umask 022 + cd /builddir/build/BUILD + rm -rf Smoldyn-2.67.3 Smoldyn-2.67.3.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Finish: rpmbuild smoldyn-2.67.3-5.fc39.src.rpm Finish: build phase for smoldyn-2.67.3-5.fc39.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-38-ppc64le-1687878414.574464/root/var/log/dnf.rpm.log /var/lib/mock/fedora-38-ppc64le-1687878414.574464/root/var/log/dnf.librepo.log /var/lib/mock/fedora-38-ppc64le-1687878414.574464/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-5.fc39.src.rpm) Config(child) 2 minutes 47 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool