## START: Set by rpmautospec ## (rpmautospec version 0.7.3) ## RPMAUTOSPEC: autorelease, autochangelog %define autorelease(e:s:pb:n) %{?-p:0.}%{lua: release_number = 32; base_release_number = tonumber(rpm.expand("%{?-b*}%{!?-b:1}")); print(release_number + base_release_number - 1); }%{?-e:.%{-e*}}%{?-s:.%{-s*}}%{!?-n:%{?dist}} ## END: Set by rpmautospec Name: python-klusta Version: 3.0.16 Release: %autorelease Summary: Spike detection and automatic clustering for spike sorting # Do not include test data in the source RPM because it does not have a known # license. See: # # Please assign a license to the data # https://github.com/kwikteam/phy-data/issues/1 # # We use a global rather than a bcond because this affects the contents of the # source RPM, but we leave in all the boilerplate for testing with data from # the phy-data repository because it can still be done manually in mock builds # outside of Fedora infrastructure, and because it will make it easy to enable # these tests in the future if upstream does assign a proper licenses. %global phy_data 0 License: BSD-3-Clause URL: https://github.com/kwikteam/klusta Source0: %{pypi_source klusta} %if 0%{?phy_data} %global phy_data_url https://github.com/kwikteam/phy-data %global phy_data_commit 804635aa76987a8900f3468cb08acf53139743a1 Source1: %{phy_data_url}/archive/%{phy_data_commit}/phy-data-%{phy_data_commit}.tar.gz %endif # Add missing runtime/install-time dependencies to setup.py # https://github.com/kwikteam/klusta/pull/80 # # Includes: # # Require setuptools, klusta/__init__.py imports pkg_resources # https://github.com/kwikteam/klusta/pull/76 Patch: %{url}/pull/80.patch # Stop using numpy type aliases that were deprecated in 1.20 and later removed # https://github.com/kwikteam/klusta/pull/81 Patch: %{url}/pull/81.patch # Do not pass a float as the num argument to np.linspace # Fixes compatibility of test_apply_filter with recent versions of numpy. # https://github.com/kwikteam/klusta/pull/82 Patch: %{url}/pull/82.patch BuildArch: noarch BuildRequires: python3-devel # For tests: BuildRequires: %{py3_dist pytest} BuildRequires: %{py3_dist responses} BuildRequires: help2man %global common_description %{expand: klusta is an open source package for automatic spike sorting of multielectrode neurophysiological recordings made with probes containing up to a few dozens of sites. klusta implements the following features: • Kwik: An HDF5-based file format that stores the results of a spike sorting session. • Spike detection (also known as SpikeDetekt): an algorithm designed for probes containing tens of channels, based on a flood-fill algorithm in the adjacency graph formed by the recording sites in the probe. • Automatic clustering (also known as Masked KlustaKwik): an automatic clustering algorithm designed for high-dimensional structured datasets.} %description %{common_description} %package -n python3-klusta Summary: %{summary} %description -n python3-klusta %{common_description} %prep %autosetup -n klusta-%{version} -p1 %if 0%{?phy_data} # Mock out a home directory with downloaded data for testing %setup -q -n klusta-%{version} -T -D -b 1 mkdir -p _user_home/.klusta/test_data ln -s '../../../../phy-data-%{phy_data_commit}/test/test-32ch-10s.dat' \ _user_home/.klusta/test_data/ %endif %generate_buildrequires %pyproject_buildrequires %build %pyproject_wheel %install %pyproject_install %pyproject_save_files -l klusta # Do this in %%install to use the generated entry point install -d '%{buildroot}%{_mandir}/man1' %{py3_test_envvars} help2man \ --no-info \ --name='Spikesort a dataset' \ --version-string='%{version}' \ --output='%{buildroot}%{_mandir}/man1/klusta.1' \ '%{buildroot}%{_bindir}/klusta' %check %pyproject_check_import # These tests require python3dist(klustakwik2), not packaged. k="${k-}${k+ and }not test_klustakwik" k="${k-}${k+ and }not test_launch_real" k="${k-}${k+ and }not test_launch_shanks" k="${k-}${k+ and }not test_sparsify_features_masks" %if !0%{?phy_data} # These tests require data from https://github.com/kwikteam/phy-data, either as # an additional source or downloaded from the network. k="${k-}${k+ and }not test_spike_detect_methods[real]" k="${k-}${k+ and }not test_spike_detect_real_data[real]" %endif mkdir -p _empty cd _empty %if 0%{?phy_data} HOME="${PWD}/../_user_home" \ %endif %pytest -v -k "${k-}" %{buildroot}%{python3_sitelib}/klusta %files -n python3-klusta -f %{pyproject_files} %doc README.md %{_bindir}/klusta %{_mandir}/man1/klusta.1* %changelog ## START: Generated by rpmautospec * Mon Dec 16 2024 Benjamin A. Beasley <code@musicinmybrain.net> - 3.0.16-32 - Modernize packaging (fix RHBZ#2319674) - Port to pyproject-rpm-macros - Handle dependencies properly - Generate a man page - Actually run the tests - Patch for compatibility with recent numpy versions * Wed Sep 04 2024 Miroslav Suchý <msuchy@redhat.com> - 3.0.16-30 - convert license to SPDX * Fri Jul 19 2024 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.16-29 - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild * Sat Jun 08 2024 Python Maint <python-maint@redhat.com> - 3.0.16-28 - Rebuilt for Python 3.13 * Sat Jan 27 2024 Maxwell G <maxwell@gtmx.me> - 3.0.16-27 - Remove unused python3-mock test dependency * Fri Jan 26 2024 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.16-26 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Mon Jan 22 2024 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.16-25 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Fri Jul 21 2023 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.16-24 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Wed Jul 12 2023 Python Maint <python-maint@redhat.com> - 3.0.16-23 - Rebuilt for Python 3.12 * Fri Jan 20 2023 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.16-22 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Fri Jul 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.16-21 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Tue Jun 14 2022 Python Maint <python-maint@redhat.com> - 3.0.16-20 - Rebuilt for Python 3.11 * Fri Jan 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.16-19 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Fri Jul 23 2021 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.16-18 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Fri Jun 04 2021 Python Maint <python-maint@redhat.com> - 3.0.16-17 - Rebuilt for Python 3.10 * Wed Jan 27 2021 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.16-16 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Wed Jul 29 2020 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.16-15 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Thu Jun 25 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 3.0.16-14 - Explicitly BR setuptools * Tue May 26 2020 Miro HronÄok <mhroncok@redhat.com> - 3.0.16-13 - Rebuilt for Python 3.9 * Thu Jan 30 2020 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.16-12 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Thu Oct 03 2019 Miro HronÄok <mhroncok@redhat.com> - 3.0.16-11 - Rebuilt for Python 3.8.0rc1 (#1748018) * Mon Aug 19 2019 Miro HronÄok <mhroncok@redhat.com> - 3.0.16-10 - Rebuilt for Python 3.8 * Fri Jul 26 2019 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.16-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Sat Feb 02 2019 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.16-8 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Wed Oct 31 2018 Miro HronÄok <mhroncok@redhat.com> - 3.0.16-7 - Subpackage python2-klusta has been removed See https://fedoraproject.org/wiki/Changes/Mass_Python_2_Package_Removal * Sat Jul 14 2018 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.16-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild * Fri Jun 29 2018 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 3.0.16-5 - Fix build * Tue Jun 19 2018 Miro HronÄok <mhroncok@redhat.com> - 3.0.16-4 - Rebuilt for Python 3.7 * Fri Feb 09 2018 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.16-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild * Tue Jan 09 2018 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 3.0.16-2 - Update based on review comments 1532082 - use py_dist macros * Sun Jan 07 2018 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 3.0.16-1 - Initial build ## END: Generated by rpmautospec