## START: Set by rpmautospec ## (rpmautospec version 0.3.0) %define autorelease(e:s:pb:n) %{?-p:0.}%{lua: release_number = 2; base_release_number = tonumber(rpm.expand("%{?-b*}%{!?-b:1}")); print(release_number + base_release_number - 1); }%{?-e:.%{-e*}}%{?-s:.%{-s*}}%{!?-n:%{?dist}} ## END: Set by rpmautospec # Try to download data, so a few are disabled. # We test these in mock using --with=net_tests --enable-network %bcond_with net_tests %global pypi_name elephant Name: python-elephant Version: 0.12.0 Release: %autorelease Summary: Elephant is a package for analysis of electrophysiology data in Python License: BSD URL: http://neuralensemble.org/elephant Source0: %{pypi_source elephant} # All changes are here # https://github.com/sanjayankur31/elephant/tree/fedora-0.11.1 Patch0: 0001-use-fedora-build-flags.patch # python-pyedflib does not support s390x, so the complete dep tree needs to also exclude it # https://src.fedoraproject.org/rpms/python-pyedflib/blob/rawhide/f/python-pyedflib.spec ExcludeArch: s390x # Includes a modified copy of fim, so we cannot use the system copy of pyfim. # https://github.com/NeuralEnsemble/elephant/issues/471#issuecomment-1098908479 BuildRequires: git-core BuildRequires: gcc-c++ BuildRequires: python3-devel %description Elephant - Electrophysiology Analysis Toolkit Elephant is a package for the analysis of neurophysiology data, based on Neo. %package -n python3-elephant Summary: %{summary} %description -n python3-elephant Elephant - Electrophysiology Analysis Toolkit Elephant is a package for the analysis of neurophysiology data, based on Neo. %prep %autosetup -n elephant-%{version} -S git # Loosen scipy version cap # https://github.com/NeuralEnsemble/elephant/issues/47 sed -i 's/scipy.*/scipy/' requirements/requirements.txt for lib in $(find . -type f -name "*.py"); do sed '1{\@^#!/usr/bin/env python@d}' $lib > $lib.new && touch -r $lib $lib.new && mv $lib.new $lib done # collect all test requirements in one file echo >> requirements/requirements-tests.txt cat requirements/requirements-extras.txt >> requirements/requirements-tests.txt %generate_buildrequires %pyproject_buildrequires -r requirements/requirements-tests.txt %build %pyproject_wheel %install %pyproject_install %pyproject_save_files elephant %check # One test fails generally: reported upstream # https://github.com/NeuralEnsemble/elephant/issues/410 # Fixed upstream (but Fedora dropped armv7hl support in F37) # https://github.com/NeuralEnsemble/elephant/pull/500 #k="not test__UE_surrogate" # fails on aarch64 # reported upstream: https://github.com/NeuralEnsemble/elephant/issues/479 %ifarch %{arm64} k="${k:-}${k:+ and }not test_welch_psd_multidim_input and not test_welch_cohere_multidim_input and not test_multitaper_cohere_perfect_cohere" %endif # fails on ppc64le %ifarch %{power64} k="${k:-}${k:+ and} not test_multitaper_cohere_perfect_cohere" %endif %if %{without net_tests} # Disable tests that download bits k="${k:-}${k:+ and }not test_repr and not test__UE_surrogate and not test_spike_contrast_with_Izhikevich_network_auto and not test_Riehle_et_al_97_UE and not test_multitaper_psd_against_nitime and not test_WPLI_ and not test_victor_purpura_matlab_comparison_" %endif # serial # MPI tests hang in mock and builders, not sure why, so we skip them for the moment %pytest -v -k "${k} and not test_parallel" %files -n python3-elephant -f %{pyproject_files} %license LICENSE.txt elephant/spade_src/LICENSE %changelog * Mon Feb 27 2023 Ankur Sinha (Ankur Sinha Gmail) 0.12.0-2 - fix: deselect failing tests * Mon Feb 27 2023 Ankur Sinha (Ankur Sinha Gmail) 0.12.0-1 - feat: update to 0.12.0 (fixes rhbz#2137931, fixes rhbz#2173307) * Fri Jan 20 2023 Fedora Release Engineering 0.11.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Sun Oct 09 2022 Ankur Sinha (Ankur Sinha Gmail) 0.11.1-3 - feat: exclude s390x * Fri Sep 09 2022 Ankur Sinha (Ankur Sinha Gmail) 0.11.1-2 - chore: add comment about upstream fix * Fri Sep 09 2022 Ankur Sinha (Ankur Sinha Gmail) 0.11.1-1 - feat: update to 0.11.1 * Fri Jul 22 2022 Fedora Release Engineering 0.11.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Mon Jul 04 2022 Python Maint 0.11.0-2 - Rebuilt for Python 3.11 * Thu Apr 21 2022 Ankur Sinha (Ankur Sinha Gmail) 0.11.0-1 - feat: update to 0.11.0 (Fixes rhbz#2070262) * Fri Jan 21 2022 Fedora Release Engineering - 0.10.0-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Fri Jul 23 2021 Fedora Release Engineering - 0.10.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Fri Jun 04 2021 Python Maint - 0.10.0-3 - Rebuilt for Python 3.10 * Fri Mar 12 2021 Ankur Sinha - 0.10.0-2 - Add py_provides macro for F32 * Thu Mar 11 2021 Ankur Sinha - 0.10.0-1 - Update to new release - Enable all non-network dependent tests - File bug for failing tests - Update fim tweak: no longer required in the test file - include statsmodels dependency * Wed Jan 27 2021 Fedora Release Engineering - 0.6.4-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Wed Jul 29 2020 Fedora Release Engineering - 0.6.4-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Tue May 26 2020 Miro Hrončok - 0.6.4-3 - Rebuilt for Python 3.9 * Thu Jan 30 2020 Fedora Release Engineering - 0.6.4-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Mon Dec 23 2019 Luis Bazan - 0.6.4-1 - New upstream version * Mon Aug 19 2019 Miro Hrončok - 0.6.2-5 - Rebuilt for Python 3.8 * Fri Jul 26 2019 Fedora Release Engineering - 0.6.2-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Fri Jun 14 2019 Ankur Sinha - 0.6.2-3 - Use pyfim which is 10 times faster than the python fast_fca according to docs - Patch out bits that try to download fim - Version neo requirements * Fri Jun 14 2019 Ankur Sinha - 0.6.2-2 - Report issues upstream and add links to spec file * Tue Jun 11 2019 Luis Bazan - 0.6.2-2 - Fix comment #11 BZ#1651824 * Fri Jun 07 2019 Luis Bazan - 0.6.2-1 - Initial package.