Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c114' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6866239-fedora-rawhide-i386 --chroot fedora-rawhide-i386 Version: 0.70 PID: 6197 Logging PID: 6198 Task: {'appstream': False, 'background': True, 'build_id': 6866239, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-i386', 'enable_net': False, 'fedora_review': False, 'git_hash': 'b4a714875196287f06ff731f4a85b6b8bc2a47d9', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.10.0/snakemake', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'snakemake', 'package_version': '7.32.4-3', 'project_dirname': 'scipy-1.10.0', 'project_name': 'scipy-1.10.0', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/scipy-1.10.0/fedora-rawhide-i386/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/scipy-1.10.0--https://src.fedoraproject.org/user/music', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/music', 'tags': [], 'task_id': '6866239-fedora-rawhide-i386', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.10.0/snakemake /var/lib/copr-rpmbuild/workspace/workdir-nzzuisfo/snakemake --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.10.0/snakemake', '/var/lib/copr-rpmbuild/workspace/workdir-nzzuisfo/snakemake', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-nzzuisfo/snakemake'... Running: git checkout b4a714875196287f06ff731f4a85b6b8bc2a47d9 -- cmd: ['git', 'checkout', 'b4a714875196287f06ff731f4a85b6b8bc2a47d9', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-nzzuisfo/snakemake rc: 0 stdout: stderr: Note: switching to 'b4a714875196287f06ff731f4a85b6b8bc2a47d9'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at b4a7148 automatic import of snakemake Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-nzzuisfo/snakemake rc: 0 stdout: /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading snakemake-7.32.4.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o snakemake-7.32.4.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/scipy-1.10.0/snakemake/snakemake-7.32.4.tar.gz/md5/2d7cd0faf40a8ca3c6e47f214536d1c9/snakemake-7.32.4.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 8677k 100 8677k 0 0 48.1M 0 --:--:-- --:--:-- --:--:-- 48.4M INFO: Reading stdout from command: md5sum snakemake-7.32.4.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-nzzuisfo/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-nzzuisfo/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1704460365.205171 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.4 starting (python version = 3.11.3, NVR = mock-5.4-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-nzzuisfo/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-nzzuisfo/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1704460365.205171 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-nzzuisfo/snakemake/snakemake.spec) Config(fedora-rawhide-i686) Start: clean chroot Finish: clean chroot Mock Version: 5.4 INFO: Mock Version: 5.4 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1704460365.205171/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-i686-bootstrap-1704460365.205171/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/c069b2feab839a2711b6a9fdd2d87873fa2700a4173b6f4506bb0003ffe7e5d2/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/c069b2feab839a2711b6a9fdd2d87873fa2700a4173b6f4506bb0003ffe7e5d2/merged) with podman image umount INFO: Using 'dnf' instead of 'dnf5' for bootstrap chroot INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf5 tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 7.2 MB/s | 1.4 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 77 MB/s | 71 MB 00:00 local 65 MB/s | 71 MB 00:01 Dependencies resolved. ========================================================================================================== Package Arch Version Repository Size ========================================================================================================== Installing: dnf5 x86_64 5.1.10-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 523 k dnf5-plugins x86_64 5.1.10-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 328 k Installing dependencies: fmt x86_64 10.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 129 k libdnf5 x86_64 5.1.10-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 925 k libdnf5-cli x86_64 5.1.10-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 216 k sdbus-cpp x86_64 1.4.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 109 k Transaction Summary ========================================================================================================== Install 6 Packages Total download size: 2.2 M Installed size: 6.1 M Downloading Packages: (1/6): fmt-10.1.1-1.fc40.x86_64.rpm 1.7 MB/s | 129 kB 00:00 (2/6): dnf5-5.1.10-2.fc40.x86_64.rpm 4.9 MB/s | 523 kB 00:00 (3/6): dnf5-plugins-5.1.10-2.fc40.x86_64.rpm 3.0 MB/s | 328 kB 00:00 (4/6): libdnf5-5.1.10-2.fc40.x86_64.rpm 23 MB/s | 925 kB 00:00 (5/6): libdnf5-cli-5.1.10-2.fc40.x86_64.rpm 10 MB/s | 216 kB 00:00 (6/6): sdbus-cpp-1.4.0-1.fc40.x86_64.rpm 5.1 MB/s | 109 kB 00:00 -------------------------------------------------------------------------------- Total 17 MB/s | 2.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : fmt-10.1.1-1.fc40.x86_64 1/6 Installing : libdnf5-5.1.10-2.fc40.x86_64 2/6 Installing : libdnf5-cli-5.1.10-2.fc40.x86_64 3/6 Installing : dnf5-5.1.10-2.fc40.x86_64 4/6 Installing : sdbus-cpp-1.4.0-1.fc40.x86_64 5/6 Installing : dnf5-plugins-5.1.10-2.fc40.x86_64 6/6 Running scriptlet: dnf5-plugins-5.1.10-2.fc40.x86_64 6/6 Installed: dnf5-5.1.10-2.fc40.x86_64 dnf5-plugins-5.1.10-2.fc40.x86_64 fmt-10.1.1-1.fc40.x86_64 libdnf5-5.1.10-2.fc40.x86_64 libdnf5-cli-5.1.10-2.fc40.x86_64 sdbus-cpp-1.4.0-1.fc40.x86_64 Complete! INFO: Switching package manager from dnf to the dnf5 (direct choice) Finish(bootstrap): installing dnf5 tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1704460365.205171/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1-2.fc40.x86_64 rpm-sequoia-1.5.0-2.fc40.x86_64 python3-dnf-4.18.2-1.fc40.noarch yum-4.18.2-1.fc40.noarch dnf5-5.1.10-2.fc40.x86_64 dnf5-plugins-5.1.10-2.fc40.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: local 100% | 50.2 MiB/s | 15.0 MiB | 00m00s Copr repository 100% | 2.4 MiB/s | 307.2 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 50.7 MiB/s | 15.0 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash i686 5.2.21-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.3 MiB bzip2 i686 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 93.9 KiB coreutils i686 9.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.6 MiB cpio i686 2.14-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB diffutils i686 3.10-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB fedora-release noarch 40-0.26 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B findutils i686 1:4.9.0-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB gawk i686 5.2.2-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB glibc-minimal-langpack i686 2.38.9000-30.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B grep i686 3.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB gzip i686 1.12-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 375.1 KiB info i686 7.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 372.4 KiB patch i686 2.7.6-22.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 281.9 KiB redhat-rpm-config noarch 274-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 180.6 KiB rpm-build i686 4.19.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 154.6 KiB sed i686 4.8-14.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 797.1 KiB shadow-utils i686 2:4.14.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.9 MiB tar i686 2:1.35-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB unzip i686 6.0-62.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 396.1 KiB util-linux i686 2.39.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.4 MiB which i686 2.21-40.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.8 KiB xz i686 5.4.5-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB Installing dependencies: alternatives i686 1.25-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 57.5 KiB ansible-srpm-macros noarch 1-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.5 KiB audit-libs i686 3.1.2-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 321.8 KiB authselect i686 1.4.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 163.6 KiB authselect-libs i686 1.4.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 994.5 KiB basesystem noarch 11-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B binutils i686 2.41-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 24.8 MiB binutils-gold i686 2.41-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB bzip2-libs i686 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 75.9 KiB ca-certificates noarch 2023.2.62_v7.0.401-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB coreutils-common i686 9.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.4 MiB cracklib i686 2.9.11-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 239.7 KiB crypto-policies noarch 20231204-1.git1e3a2e4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.3 KiB curl i686 8.5.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 805.6 KiB cyrus-sasl-lib i686 2.1.28-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB debugedit i686 5.0-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.7 KiB dwz i686 0.15-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 304.9 KiB ed i686 1.19-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 139.1 KiB efi-srpm-macros noarch 5-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils i686 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB elfutils-debuginfod-client i686 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 59.2 KiB elfutils-default-yama-scope noarch 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf i686 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB elfutils-libs i686 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 708.7 KiB fedora-gpg-keys noarch 40-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 123.2 KiB fedora-release-common noarch 40-0.26 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.0 KiB fedora-release-identity-basic noarch 40-0.26 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0 B fedora-repos noarch 40-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 KiB fedora-repos-rawhide noarch 40-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 KiB file i686 5.45-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 94.5 KiB file-libs i686 5.45-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.9 MiB filesystem i686 3.18-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.0 B fonts-srpm-macros noarch 1:2.0.5-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55.3 KiB forge-srpm-macros noarch 0.2.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.4 KiB fpc-srpm-macros noarch 1.3-8.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0 B 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ocaml-srpm-macros noarch 9-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB openblas-srpm-macros noarch 2-14.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 104.0 B openldap i686 2.6.6-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 682.8 KiB openssl-libs i686 1:3.1.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.0 MiB p11-kit i686 0.25.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB p11-kit-trust i686 0.25.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 385.8 KiB package-notes-srpm-macros noarch 0.5-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam i686 1.5.3-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB pam-libs i686 1.5.3-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 128.7 KiB pcre2 i686 10.42-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 636.1 KiB pcre2-syntax noarch 10.42-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235.1 KiB perl-srpm-macros noarch 1-51.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf i686 1.9.5-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.3 KiB pkgconf-m4 noarch 1.9.5-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13.9 KiB pkgconf-pkg-config i686 1.9.5-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 979.0 B popt i686 1.19-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 135.9 KiB publicsuffix-list-dafsa noarch 20230812-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 66.7 KiB pyproject-srpm-macros noarch 1.11.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 KiB python-srpm-macros noarch 3.12-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 50.1 KiB qt5-srpm-macros noarch 5.15.12-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492.0 B qt6-srpm-macros noarch 6.6.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline i686 8.2-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 465.5 KiB rpm i686 4.19.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.9 MiB rpm-build-libs i686 4.19.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.2 KiB rpm-libs i686 4.19.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 792.8 KiB rpm-sequoia i686 1.5.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB rust-srpm-macros noarch 25.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.1 KiB setup noarch 2.14.5-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.4 KiB sqlite-libs i686 3.44.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB systemd-libs i686 255.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB util-linux-core i686 2.39.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB xxhash-libs i686 0.8.2-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 119.8 KiB xz-libs i686 5.4.5-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229.2 KiB zig-srpm-macros noarch 1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip i686 3.0-39.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 711.1 KiB zlib-ng-compat i686 2.1.5-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.3 KiB zstd i686 1.5.5-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB Installing groups: build Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation 175 MiB will be used (install 175 MiB, remove 0 B). [ 1/153] bash-0:5.2.21-2.fc40.i686 100% | 17.0 MiB/s | 1.8 MiB | 00m00s [ 2/153] cpio-0:2.14-5.fc40.i686 100% | 11.8 MiB/s | 277.7 KiB | 00m00s [ 3/153] bzip2-0:1.0.8-16.fc39.i686 100% | 354.7 KiB/s | 52.9 KiB | 00m00s [ 4/153] diffutils-0:3.10-3.fc39.i686 100% | 17.5 MiB/s | 393.7 KiB | 00m00s [ 5/153] fedora-release-0:40-0.26.noar 100% | 609.2 KiB/s | 9.7 KiB | 00m00s [ 6/153] findutils-1:4.9.0-6.fc40.i686 100% | 13.4 MiB/s | 492.3 KiB | 00m00s [ 7/153] glibc-minimal-langpack-0:2.38 100% | 4.6 MiB/s | 89.0 KiB | 00m00s [ 8/153] grep-0:3.11-5.fc40.i686 100% | 15.1 MiB/s | 293.7 KiB | 00m00s [ 9/153] gzip-0:1.12-6.fc39.i686 100% | 8.6 MiB/s | 157.6 KiB | 00m00s [ 10/153] info-0:7.1-1.fc40.i686 100% | 9.6 MiB/s | 186.6 KiB | 00m00s [ 11/153] coreutils-0:9.4-1.fc40.i686 100% | 4.3 MiB/s | 1.2 MiB | 00m00s [ 12/153] patch-0:2.7.6-22.fc39.i686 100% | 7.5 MiB/s | 137.9 KiB | 00m00s [ 13/153] redhat-rpm-config-0:274-1.fc4 100% | 2.4 MiB/s | 73.9 KiB | 00m00s [ 14/153] rpm-build-0:4.19.1-2.fc40.i68 100% | 2.4 MiB/s | 71.9 KiB | 00m00s [ 15/153] sed-0:4.8-14.fc39.i686 100% | 15.4 MiB/s | 299.9 KiB | 00m00s [ 16/153] gawk-0:5.2.2-2.fc39.i686 100% | 5.8 MiB/s | 1.0 MiB | 00m00s [ 17/153] shadow-utils-2:4.14.0-2.fc40. 100% | 28.6 MiB/s | 1.2 MiB | 00m00s [ 18/153] unzip-0:6.0-62.fc39.i686 100% | 3.7 MiB/s | 179.6 KiB | 00m00s [ 19/153] util-linux-0:2.39.3-1.fc40.i6 100% | 30.9 MiB/s | 1.1 MiB | 00m00s [ 20/153] tar-2:1.35-2.fc40.i686 100% | 10.7 MiB/s | 864.3 KiB | 00m00s [ 21/153] which-0:2.21-40.fc39.i686 100% | 2.4 MiB/s | 41.9 KiB | 00m00s [ 22/153] xz-libs-0:5.4.5-1.fc40.i686 100% | 6.4 MiB/s | 118.2 KiB | 00m00s [ 23/153] xz-0:5.4.5-1.fc40.i686 100% | 13.4 MiB/s | 534.7 KiB | 00m00s [ 24/153] audit-libs-0:3.1.2-5.fc40.i68 100% | 6.8 MiB/s | 124.7 KiB | 00m00s [ 25/153] libblkid-0:2.39.3-1.fc40.i686 100% | 5.0 MiB/s | 127.5 KiB | 00m00s [ 26/153] authselect-libs-0:1.4.3-1.fc4 100% | 5.4 MiB/s | 237.3 KiB | 00m00s [ 27/153] libcap-ng-0:0.8.4-2.fc40.i686 100% | 1.9 MiB/s | 33.1 KiB | 00m00s [ 28/153] glibc-0:2.38.9000-30.fc40.i68 100% | 20.8 MiB/s | 2.0 MiB | 00m00s [ 29/153] libmount-0:2.39.3-1.fc40.i686 100% | 8.3 MiB/s | 161.7 KiB | 00m00s [ 30/153] libsmartcols-0:2.39.3-1.fc40. 100% | 3.7 MiB/s | 69.0 KiB | 00m00s [ 31/153] libselinux-0:3.6-2.fc40.i686 100% | 1.9 MiB/s | 92.8 KiB | 00m00s [ 32/153] libfdisk-0:2.39.3-1.fc40.i686 100% | 2.6 MiB/s | 175.4 KiB | 00m00s [ 33/153] libutempter-0:1.2.1-10.fc39.i 100% | 983.6 KiB/s | 26.6 KiB | 00m00s [ 34/153] libuuid-0:2.39.3-1.fc40.i686 100% | 1.7 MiB/s | 29.2 KiB | 00m00s [ 35/153] pam-0:1.5.3-9.fc40.i686 100% | 23.4 MiB/s | 526.6 KiB | 00m00s [ 36/153] pam-libs-0:1.5.3-9.fc40.i686 100% | 2.2 MiB/s | 59.8 KiB | 00m00s [ 37/153] ncurses-libs-0:6.4-8.20231001 100% | 7.0 MiB/s | 359.0 KiB | 00m00s [ 38/153] readline-0:8.2-4.fc39.i686 100% | 10.7 MiB/s | 218.2 KiB | 00m00s [ 39/153] util-linux-core-0:2.39.3-1.fc 100% | 21.5 MiB/s | 505.6 KiB | 00m00s [ 40/153] zlib-ng-compat-0:2.1.5-1.fc40 100% | 4.0 MiB/s | 81.2 KiB | 00m00s [ 41/153] systemd-libs-0:255.1-1.fc40.i 100% | 15.8 MiB/s | 743.9 KiB | 00m00s [ 42/153] bzip2-libs-0:1.0.8-16.fc39.i6 100% | 2.4 MiB/s | 41.5 KiB | 00m00s [ 43/153] libacl-0:2.3.1-11.fc40.i686 100% | 1.2 MiB/s | 25.3 KiB | 00m00s [ 44/153] libcap-0:2.69-1.fc40.i686 100% | 4.8 MiB/s | 84.0 KiB | 00m00s [ 45/153] libgcc-0:13.2.1-6.fc40.i686 100% | 5.9 MiB/s | 121.4 KiB | 00m00s [ 46/153] libzstd-0:1.5.5-4.fc39.i686 100% | 12.9 MiB/s | 289.9 KiB | 00m00s [ 47/153] lz4-libs-0:1.9.4-4.fc39.i686 100% | 3.8 MiB/s | 70.1 KiB | 00m00s [ 48/153] libattr-0:2.5.1-9.fc40.i686 100% | 906.2 KiB/s | 18.1 KiB | 00m00s [ 49/153] libeconf-0:0.5.2-1.fc40.i686 100% | 2.0 MiB/s | 32.0 KiB | 00m00s [ 50/153] libsemanage-0:3.6-1.fc40.i686 100% | 5.8 MiB/s | 125.2 KiB | 00m00s [ 51/153] libxcrypt-0:4.4.36-3.fc40.i68 100% | 7.0 MiB/s | 121.9 KiB | 00m00s [ 52/153] setup-0:2.14.5-1.fc40.noarch 100% | 6.9 MiB/s | 148.1 KiB | 00m00s [ 53/153] debugedit-0:5.0-12.fc40.i686 100% | 3.0 MiB/s | 80.0 KiB | 00m00s [ 54/153] elfutils-0:0.190-4.fc40.i686 100% | 16.3 MiB/s | 568.0 KiB | 00m00s [ 55/153] elfutils-libelf-0:0.190-4.fc4 100% | 7.8 MiB/s | 200.9 KiB | 00m00s [ 56/153] file-0:5.45-1.fc40.i686 100% | 2.5 MiB/s | 49.2 KiB | 00m00s [ 57/153] pkgconf-pkg-config-0:1.9.5-2. 100% | 481.0 KiB/s | 9.6 KiB | 00m00s [ 58/153] binutils-0:2.41-20.fc40.i686 100% | 64.7 MiB/s | 5.9 MiB | 00m00s [ 59/153] popt-0:1.19-3.fc39.i686 100% | 2.4 MiB/s | 61.6 KiB | 00m00s [ 60/153] rpm-0:4.19.1-2.fc40.i686 100% | 15.5 MiB/s | 506.5 KiB | 00m00s [ 61/153] rpm-build-libs-0:4.19.1-2.fc4 100% | 5.9 MiB/s | 102.0 KiB | 00m00s [ 62/153] rpm-libs-0:4.19.1-2.fc40.i686 100% | 11.1 MiB/s | 341.0 KiB | 00m00s [ 63/153] zstd-0:1.5.5-4.fc39.i686 100% | 17.6 MiB/s | 451.2 KiB | 00m00s [ 64/153] libarchive-0:3.7.2-1.fc40.i68 100% | 16.3 MiB/s | 449.7 KiB | 00m00s [ 65/153] ansible-srpm-macros-0:1-11.fc 100% | 1.2 MiB/s | 20.7 KiB | 00m00s [ 66/153] dwz-0:0.15-3.fc39.i686 100% | 6.8 MiB/s | 138.6 KiB | 00m00s [ 67/153] efi-srpm-macros-0:5-9.fc39.no 100% | 1.3 MiB/s | 22.2 KiB | 00m00s [ 68/153] fonts-srpm-macros-1:2.0.5-12. 100% | 1.4 MiB/s | 26.5 KiB | 00m00s [ 69/153] forge-srpm-macros-0:0.2.0-1.f 100% | 1.1 MiB/s | 18.5 KiB | 00m00s [ 70/153] glibc-gconv-extra-0:2.38.9000 100% | 24.4 MiB/s | 1.7 MiB | 00m00s [ 71/153] fpc-srpm-macros-0:1.3-8.fc39. 100% | 461.0 KiB/s | 7.4 KiB | 00m00s [ 72/153] ghc-srpm-macros-0:1.6.1-3.fc4 100% | 449.5 KiB/s | 8.1 KiB | 00m00s [ 73/153] gnat-srpm-macros-0:6-3.fc39.n 100% | 490.2 KiB/s | 8.8 KiB | 00m00s [ 74/153] go-srpm-macros-0:3.3.1-1.fc40 100% | 1.5 MiB/s | 27.7 KiB | 00m00s [ 75/153] kernel-srpm-macros-0:1.0-20.f 100% | 655.2 KiB/s | 10.5 KiB | 00m00s [ 76/153] lua-srpm-macros-0:1-9.fc39.no 100% | 431.0 KiB/s | 8.6 KiB | 00m00s [ 77/153] ocaml-srpm-macros-0:9-1.fc40. 100% | 529.5 KiB/s | 9.0 KiB | 00m00s [ 78/153] openblas-srpm-macros-0:2-14.f 100% | 397.3 KiB/s | 7.5 KiB | 00m00s [ 79/153] package-notes-srpm-macros-0:0 100% | 698.9 KiB/s | 11.2 KiB | 00m00s [ 80/153] perl-srpm-macros-0:1-51.fc39. 100% | 421.5 KiB/s | 8.0 KiB | 00m00s [ 81/153] pyproject-srpm-macros-0:1.11. 100% | 867.7 KiB/s | 14.8 KiB | 00m00s [ 82/153] qt5-srpm-macros-0:5.15.12-1.f 100% | 466.9 KiB/s | 8.4 KiB | 00m00s [ 83/153] python-srpm-macros-0:3.12-5.f 100% | 1.0 MiB/s | 24.9 KiB | 00m00s [ 84/153] qt6-srpm-macros-0:6.6.1-3.fc4 100% | 463.1 KiB/s | 8.8 KiB | 00m00s [ 85/153] rust-srpm-macros-0:25.2-2.fc4 100% | 763.3 KiB/s | 13.0 KiB | 00m00s [ 86/153] zig-srpm-macros-0:1-1.fc40.no 100% | 419.8 KiB/s | 8.0 KiB | 00m00s [ 87/153] zip-0:3.0-39.fc40.i686 100% | 13.0 MiB/s | 267.2 KiB | 00m00s [ 88/153] pkgconf-0:1.9.5-2.fc39.i686 100% | 2.6 MiB/s | 42.7 KiB | 00m00s [ 89/153] pkgconf-m4-0:1.9.5-2.fc39.noa 100% | 730.5 KiB/s | 13.9 KiB | 00m00s [ 90/153] libpkgconf-0:1.9.5-2.fc39.i68 100% | 2.4 MiB/s | 41.1 KiB | 00m00s [ 91/153] ed-0:1.19-4.fc39.i686 100% | 3.8 MiB/s | 78.0 KiB | 00m00s [ 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[105/153] pcre2-0:10.42-2.fc40.i686 100% | 10.3 MiB/s | 231.0 KiB | 00m00s [106/153] cracklib-0:2.9.11-2.fc39.i686 100% | 4.0 MiB/s | 82.9 KiB | 00m00s [107/153] libverto-0:0.3.2-6.fc39.i686 100% | 1.1 MiB/s | 21.0 KiB | 00m00s [108/153] keyutils-libs-0:1.6.3-1.fc40. 100% | 1.6 MiB/s | 31.8 KiB | 00m00s [109/153] libxml2-0:2.12.3-1.fc40.i686 100% | 28.5 MiB/s | 729.4 KiB | 00m00s [110/153] glibc-common-0:2.38.9000-30.f 100% | 18.5 MiB/s | 378.1 KiB | 00m00s [111/153] basesystem-0:11-18.fc39.noarc 100% | 360.2 KiB/s | 7.2 KiB | 00m00s [112/153] filesystem-0:3.18-6.fc39.i686 100% | 27.4 MiB/s | 1.1 MiB | 00m00s [113/153] libsigsegv-0:2.14-5.fc39.i686 100% | 1.3 MiB/s | 27.2 KiB | 00m00s [114/153] gmp-1:6.2.1-5.fc39.i686 100% | 13.0 MiB/s | 305.5 KiB | 00m00s [115/153] mpfr-0:4.2.1-1.fc40.i686 100% | 18.6 MiB/s | 380.1 KiB | 00m00s [116/153] fedora-release-common-0:40-0. 100% | 963.4 KiB/s | 20.2 KiB | 00m00s [117/153] file-libs-0:5.45-1.fc40.i686 100% | 23.5 MiB/s | 770.0 KiB | 00m00s [118/153] elfutils-libs-0:0.190-4.fc40. 100% | 14.9 MiB/s | 289.7 KiB | 00m00s [119/153] libstdc++-0:13.2.1-6.fc40.i68 100% | 23.9 MiB/s | 930.6 KiB | 00m00s [120/153] coreutils-common-0:9.4-1.fc40 100% | 40.8 MiB/s | 2.1 MiB | 00m00s [121/153] p11-kit-trust-0:0.25.3-1.fc40 100% | 6.2 MiB/s | 139.9 KiB | 00m00s [122/153] p11-kit-0:0.25.3-1.fc40.i686 100% | 10.2 MiB/s | 489.7 KiB | 00m00s [123/153] alternatives-0:1.25-1.fc39.i6 100% | 2.4 MiB/s | 39.1 KiB | 00m00s [124/153] elfutils-debuginfod-client-0: 100% | 2.0 MiB/s | 38.1 KiB | 00m00s [125/153] jansson-0:2.13.1-7.fc39.i686 100% | 2.6 MiB/s | 45.8 KiB | 00m00s [126/153] lua-libs-0:5.4.6-3.fc39.i686 100% | 6.9 MiB/s | 149.4 KiB | 00m00s [127/153] binutils-gold-0:2.41-20.fc40. 100% | 19.6 MiB/s | 882.2 KiB | 00m00s [128/153] rpm-sequoia-0:1.5.0-2.fc40.i6 100% | 26.4 MiB/s | 945.4 KiB | 00m00s [129/153] libgomp-0:13.2.1-6.fc40.i686 100% | 11.7 MiB/s | 324.4 KiB | 00m00s [130/153] sqlite-libs-0:3.44.2-1.fc40.i 100% | 20.4 MiB/s | 732.9 KiB | 00m00s [131/153] pcre2-syntax-0:10.42-2.fc40.n 100% | 7.8 MiB/s | 143.1 KiB | 00m00s [132/153] libtasn1-0:4.19.0-3.fc39.i686 100% | 3.6 MiB/s | 74.7 KiB | 00m00s [133/153] libffi-0:3.4.4-5.fc40.i686 100% | 2.0 MiB/s | 37.3 KiB | 00m00s [134/153] fedora-release-identity-basic 100% | 658.4 KiB/s | 10.5 KiB | 00m00s [135/153] fedora-repos-0:40-0.2.noarch 100% | 492.0 KiB/s | 9.3 KiB | 00m00s [136/153] elfutils-default-yama-scope-0 100% | 755.1 KiB/s | 12.8 KiB | 00m00s [137/153] fedora-gpg-keys-0:40-0.2.noar 100% | 6.9 MiB/s | 119.4 KiB | 00m00s [138/153] fedora-repos-rawhide-0:40-0.2 100% | 469.6 KiB/s | 8.9 KiB | 00m00s [139/153] curl-0:8.5.0-1.fc40.i686 100% | 15.9 MiB/s | 375.2 KiB | 00m00s [140/153] xxhash-libs-0:0.8.2-1.fc39.i6 100% | 2.5 MiB/s | 49.4 KiB | 00m00s [141/153] libcurl-0:8.5.0-1.fc40.i686 100% | 15.1 MiB/s | 372.1 KiB | 00m00s [142/153] libbrotli-0:1.1.0-1.fc40.i686 100% | 13.3 MiB/s | 340.0 KiB | 00m00s [143/153] libidn2-0:2.3.4-3.fc39.i686 100% | 6.4 MiB/s | 111.3 KiB | 00m00s [144/153] libnghttp2-0:1.58.0-1.fc40.i6 100% | 3.1 MiB/s | 82.1 KiB | 00m00s [145/153] libpsl-0:0.21.2-4.fc39.i686 100% | 3.1 MiB/s | 63.5 KiB | 00m00s [146/153] libssh-0:0.10.6-2.fc40.i686 100% | 11.7 MiB/s | 227.1 KiB | 00m00s [147/153] openldap-0:2.6.6-1.fc39.i686 100% | 12.7 MiB/s | 273.2 KiB | 00m00s [148/153] gdb-minimal-0:14.1-1.fc40.i68 100% | 34.2 MiB/s | 4.6 MiB | 00m00s [149/153] libevent-0:2.1.12-9.fc39.i686 100% | 12.3 MiB/s | 276.7 KiB | 00m00s [150/153] cyrus-sasl-lib-0:2.1.28-11.fc 100% | 23.9 MiB/s | 856.9 KiB | 00m00s [151/153] libssh-config-0:0.10.6-2.fc40 100% | 504.1 KiB/s | 9.1 KiB | 00m00s [152/153] libunistring-0:1.1-5.fc40.i68 100% | 22.4 MiB/s | 551.2 KiB | 00m00s [153/153] publicsuffix-list-dafsa-0:202 100% | 2.5 MiB/s | 57.4 KiB | 00m00s -------------------------------------------------------------------------------- [153/153] Total 100% | 33.2 MiB/s | 52.6 MiB | 00m02s Running transaction [ 1/155] Verify package files 100% | 813.0 B/s | 153.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-6.fc39.i686 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-6.fc39.i686 [ 2/155] Prepare transaction 100% | 2.8 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:13.2.1-6. 100% | 124.6 MiB/s | 255.1 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:13.2.1-6.fc40.i686 >>> Stop post-install scriptlet: libgcc-0:13.2.1-6.fc40.i686 [ 4/155] Installing crypto-policies-0: 100% | 25.3 MiB/s | 181.7 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20231204-1.git1e3a2e4.fc40 >>> Stop post-install scriptlet: crypto-policies-0:20231204-1.git1e3a2e4.fc40.no [ 5/155] Installing fedora-release-ide 100% | 929.7 KiB/s | 952.0 B | 00m00s [ 6/155] Installing fedora-gpg-keys-0: 100% | 32.7 MiB/s | 167.6 KiB | 00m00s [ 7/155] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 8/155] Installing fedora-repos-0:40- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 9/155] Installing fedora-release-com 100% | 22.6 MiB/s | 23.1 KiB | 00m00s [ 10/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 11/155] Installing setup-0:2.14.5-1.f 100% | 54.5 MiB/s | 725.8 KiB | 00m00s >>> Running post-install scriptlet: setup-0:2.14.5-1.fc40.noarch >>> Stop post-install scriptlet: setup-0:2.14.5-1.fc40.noarch [ 12/155] Installing filesystem-0:3.18- 100% | 2.3 MiB/s | 211.9 KiB | 00m00s [ 13/155] Installing basesystem-0:11-18 100% | 0.0 B/s | 124.0 B | 00m00s [ 14/155] Installing publicsuffix-list- 100% | 65.8 MiB/s | 67.4 KiB | 00m00s [ 15/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 16/155] Installing pcre2-syntax-0:10. 100% | 232.0 MiB/s | 237.6 KiB | 00m00s [ 17/155] Installing coreutils-common-0 100% | 309.8 MiB/s | 11.5 MiB | 00m00s [ 18/155] Installing ncurses-base-0:6.4 100% | 57.0 MiB/s | 350.1 KiB | 00m00s [ 19/155] Installing pkgconf-m4-0:1.9.5 100% | 0.0 B/s | 14.3 KiB | 00m00s [ 20/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.8 KiB | 00m00s [ 21/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [ 22/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 768.0 B | 00m00s [ 23/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [ 24/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [ 25/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 384.0 B | 00m00s [ 26/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [ 27/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [ 28/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [ 29/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 648.0 B | 00m00s [ 30/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [ 31/155] Installing ansible-srpm-macro 100% | 35.3 MiB/s | 36.1 KiB | 00m00s [ 32/155] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 33/155] Installing ncurses-libs-0:6.4 100% | 197.9 MiB/s | 1.0 MiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.38.9000-30.fc40.i686 >>> Stop pre-install scriptlet: glibc-0:2.38.9000-30.fc40.i686 [ 34/155] Installing glibc-0:2.38.9000- 100% | 195.8 MiB/s | 5.5 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.38.9000-30.fc40.i686 >>> Stop post-install scriptlet: glibc-0:2.38.9000-30.fc40.i686 [ 35/155] Installing bash-0:5.2.21-2.fc 100% | 332.2 MiB/s | 8.3 MiB | 00m00s >>> Running post-install scriptlet: bash-0:5.2.21-2.fc40.i686 >>> Stop post-install scriptlet: bash-0:5.2.21-2.fc40.i686 [ 36/155] Installing glibc-common-0:2.3 100% | 145.1 MiB/s | 1.0 MiB | 00m00s [ 37/155] Installing glibc-gconv-extra- 100% | 179.3 MiB/s | 7.7 MiB | 00m00s >>> Running post-install scriptlet: glibc-gconv-extra-0:2.38.9000-30.fc40.i686 >>> Stop post-install scriptlet: glibc-gconv-extra-0:2.38.9000-30.fc40.i686 [ 38/155] Installing zlib-ng-compat-0:2 100% | 146.6 MiB/s | 150.2 KiB | 00m00s [ 39/155] Installing xz-libs-0:5.4.5-1. 100% | 224.9 MiB/s | 230.3 KiB | 00m00s [ 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00m00s [ 78/155] Installing libtasn1-0:4.19.0- 100% | 176.5 MiB/s | 180.7 KiB | 00m00s [ 79/155] Installing libunistring-0:1.1 100% | 290.3 MiB/s | 1.7 MiB | 00m00s [ 80/155] Installing elfutils-default-y 100% | 408.6 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.190-4.fc40.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.190-4.fc40.noar [ 81/155] Installing libidn2-0:2.3.4-3. 100% | 79.2 MiB/s | 324.3 KiB | 00m00s [ 82/155] Installing libpsl-0:0.21.2-4. 100% | 75.1 MiB/s | 76.9 KiB | 00m00s [ 83/155] Installing util-linux-core-0: 100% | 163.0 MiB/s | 1.3 MiB | 00m00s [ 84/155] Installing tar-2:1.35-2.fc40. 100% | 250.3 MiB/s | 3.0 MiB | 00m00s [ 85/155] Installing libsemanage-0:3.6- 100% | 151.3 MiB/s | 309.8 KiB | 00m00s [ 86/155] Installing shadow-utils-2:4.1 100% | 110.7 MiB/s | 4.0 MiB | 00m00s >>> Running pre-install scriptlet: libutempter-0:1.2.1-10.fc39.i686 >>> Stop pre-install scriptlet: libutempter-0:1.2.1-10.fc39.i686 [ 87/155] Installing libutempter-0:1.2. 100% | 28.4 MiB/s | 58.1 KiB | 00m00s [ 88/155] Installing zip-0:3.0-39.fc40. 100% | 232.7 MiB/s | 714.8 KiB | 00m00s [ 89/155] Installing gdbm-1:1.23-4.fc39 100% | 151.9 MiB/s | 466.6 KiB | 00m00s [ 90/155] Installing cyrus-sasl-lib-0:2 100% | 276.9 MiB/s | 2.5 MiB | 00m00s [ 91/155] Installing zstd-0:1.5.5-4.fc3 100% | 306.2 MiB/s | 1.5 MiB | 00m00s [ 92/155] Installing libfdisk-0:2.39.3- 100% | 202.7 MiB/s | 415.2 KiB | 00m00s [ 93/155] Installing bzip2-0:1.0.8-16.f 100% | 48.1 MiB/s | 98.4 KiB | 00m00s [ 94/155] Installing libxml2-0:2.12.3-1 100% | 262.9 MiB/s | 1.8 MiB | 00m00s [ 95/155] Installing sqlite-libs-0:3.44 100% | 290.4 MiB/s | 1.5 MiB | 00m00s [ 96/155] Installing ed-0:1.19-4.fc39.i 100% | 138.1 MiB/s | 141.4 KiB | 00m00s [ 97/155] Installing patch-0:2.7.6-22.f 100% | 138.4 MiB/s | 283.4 KiB | 00m00s [ 98/155] Installing cpio-0:2.14-5.fc40 100% | 206.5 MiB/s | 1.0 MiB | 00m00s [ 99/155] Installing diffutils-0:3.10-3 100% | 226.1 MiB/s | 1.6 MiB | 00m00s [100/155] Installing libpkgconf-0:1.9.5 100% | 79.9 MiB/s | 81.8 KiB | 00m00s [101/155] Installing pkgconf-0:1.9.5-2. 100% | 78.9 MiB/s | 80.8 KiB | 00m00s [102/155] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [103/155] Installing keyutils-libs-0:1. 100% | 57.6 MiB/s | 59.0 KiB | 00m00s [104/155] Installing libverto-0:0.3.2-6 100% | 29.8 MiB/s | 30.5 KiB | 00m00s [105/155] Installing libsigsegv-0:2.14- 100% | 48.9 MiB/s | 50.1 KiB | 00m00s [106/155] Installing gawk-0:5.2.2-2.fc3 100% | 217.0 MiB/s | 1.7 MiB | 00m00s [107/155] Installing libgomp-0:13.2.1-6 100% | 237.4 MiB/s | 486.3 KiB | 00m00s [108/155] Installing libffi-0:3.4.4-5.f 100% | 76.3 MiB/s | 78.1 KiB | 00m00s [109/155] Installing p11-kit-0:0.25.3-1 100% | 202.0 MiB/s | 2.4 MiB | 00m00s [110/155] Installing p11-kit-trust-0:0. 100% | 47.3 MiB/s | 387.5 KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.3-1.fc40.i686 >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.3-1.fc40.i686 [111/155] Installing openssl-libs-1:3.1 100% | 299.1 MiB/s | 6.0 MiB | 00m00s [112/155] Installing coreutils-0:9.4-1. 100% | 215.8 MiB/s | 5.6 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.n >>> Stop pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.noar [113/155] Installing ca-certificates-0: 100% | 2.0 MiB/s | 2.3 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40. >>> Stop post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.noa [114/155] Installing krb5-libs-0:1.21.2 100% | 215.9 MiB/s | 2.4 MiB | 00m00s [115/155] Installing libtirpc-0:1.3.4-1 100% | 210.7 MiB/s | 215.7 KiB | 00m00s [116/155] Installing gzip-0:1.12-6.fc39 100% | 123.9 MiB/s | 380.6 KiB | 00m00s >>> Running pre-install scriptlet: authselect-libs-0:1.4.3-1.fc40.i686 >>> Stop pre-install scriptlet: authselect-libs-0:1.4.3-1.fc40.i686 [117/155] Installing authselect-libs-0: 100% | 140.8 MiB/s | 1.0 MiB | 00m00s [118/155] Installing authselect-0:1.4.3 100% | 54.7 MiB/s | 168.0 KiB | 00m00s [119/155] Installing cracklib-0:2.9.11- 100% | 49.0 MiB/s | 251.0 KiB | 00m00s [120/155] Installing libpwquality-0:1.4 100% | 82.6 MiB/s | 422.8 KiB | 00m00s [121/155] Installing libnsl2-0:2.0.0-6. 100% | 60.8 MiB/s | 62.2 KiB | 00m00s [122/155] Installing pam-0:1.5.3-9.fc40 100% | 101.8 MiB/s | 1.7 MiB | 00m00s [123/155] Installing libssh-0:0.10.6-2. 100% | 276.0 MiB/s | 565.3 KiB | 00m00s [124/155] Installing libarchive-0:3.7.2 100% | 244.2 MiB/s | 1.0 MiB | 00m00s [125/155] Installing rpm-sequoia-0:1.5. 100% | 316.1 MiB/s | 2.5 MiB | 00m00s [126/155] Installing rpm-libs-0:4.19.1- 100% | 258.6 MiB/s | 794.4 KiB | 00m00s [127/155] Installing libevent-0:2.1.12- 100% | 238.2 MiB/s | 975.7 KiB | 00m00s [128/155] Installing openldap-0:2.6.6-1 100% | 167.6 MiB/s | 686.5 KiB | 00m00s [129/155] Installing xxhash-libs-0:0.8. 100% | 118.4 MiB/s | 121.2 KiB | 00m00s [130/155] Installing libbrotli-0:1.1.0- 100% | 279.2 MiB/s | 857.8 KiB | 00m00s [131/155] Installing libnghttp2-0:1.58. 100% | 170.5 MiB/s | 174.6 KiB | 00m00s [132/155] Installing libcurl-0:8.5.0-1. 100% | 264.9 MiB/s | 813.8 KiB | 00m00s [133/155] Installing elfutils-debuginfo 100% | 59.8 MiB/s | 61.2 KiB | 00m00s [134/155] Installing elfutils-libs-0:0. 100% | 231.3 MiB/s | 710.5 KiB | 00m00s [135/155] Installing binutils-gold-0:2. 100% | 168.9 MiB/s | 2.2 MiB | 00m00s >>> Running post-install scriptlet: binutils-gold-0:2.41-20.fc40.i686 >>> Stop post-install scriptlet: binutils-gold-0:2.41-20.fc40.i686 [136/155] Installing binutils-0:2.41-20 100% | 330.5 MiB/s | 24.8 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.41-20.fc40.i686 >>> Stop post-install scriptlet: binutils-0:2.41-20.fc40.i686 [137/155] Installing elfutils-0:0.190-4 100% | 291.3 MiB/s | 2.6 MiB | 00m00s [138/155] Installing gdb-minimal-0:14.1 100% | 342.1 MiB/s | 13.3 MiB | 00m00s [139/155] Installing debugedit-0:5.0-12 100% | 190.8 MiB/s | 195.4 KiB | 00m00s [140/155] Installing rpm-build-libs-0:4 100% | 205.1 MiB/s | 210.0 KiB | 00m00s [141/155] Installing curl-0:8.5.0-1.fc4 100% | 65.8 MiB/s | 807.9 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.1-2.fc40.i686 >>> Stop pre-install scriptlet: rpm-0:4.19.1-2.fc40.i686 [142/155] Installing rpm-0:4.19.1-2.fc4 100% | 119.4 MiB/s | 2.4 MiB | 00m00s [143/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [144/155] Installing lua-srpm-macros-0: 100% | 1.8 MiB/s | 1.9 KiB | 00m00s [145/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [146/155] Installing fonts-srpm-macros- 100% | 55.1 MiB/s | 56.5 KiB | 00m00s [147/155] Installing forge-srpm-macros- 100% | 37.7 MiB/s | 38.6 KiB | 00m00s [148/155] Installing go-srpm-macros-0:3 100% | 60.2 MiB/s | 61.6 KiB | 00m00s [149/155] Installing python-srpm-macros 100% | 50.1 MiB/s | 51.3 KiB | 00m00s [150/155] Installing redhat-rpm-config- 100% | 91.2 MiB/s | 186.8 KiB | 00m00s [151/155] Installing rpm-build-0:4.19.1 100% | 53.0 MiB/s | 162.8 KiB | 00m00s [152/155] Installing pyproject-srpm-mac 100% | 2.0 MiB/s | 2.1 KiB | 00m00s [153/155] Installing util-linux-0:2.39. 100% | 163.4 MiB/s | 3.4 MiB | 00m00s [154/155] Installing which-0:2.21-40.fc 100% | 79.1 MiB/s | 81.0 KiB | 00m00s [155/155] Installing info-0:7.1-1.fc40. 100% | 264.4 KiB/s | 372.8 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-6.fc39.i686 >>> Stop post-transaction scriptlet: filesystem-0:3.18-6.fc39.i686 >>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.f >>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40 >>> Running post-transaction scriptlet: authselect-libs-0:1.4.3-1.fc40.i686 >>> Stop post-transaction scriptlet: authselect-libs-0:1.4.3-1.fc40.i686 >>> Running post-transaction scriptlet: rpm-0:4.19.1-2.fc40.i686 >>> Stop post-transaction scriptlet: rpm-0:4.19.1-2.fc40.i686 >>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-30.fc40.i686 >>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-30.fc40.i686 >>> Running trigger-install scriptlet: info-0:7.1-1.fc40.i686 >>> Stop trigger-install scriptlet: info-0:7.1-1.fc40.i686 Warning: skipped PGP checks for 153 package(s). Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.i686 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.i686 authselect-1.4.3-1.fc40.i686 authselect-libs-1.4.3-1.fc40.i686 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.i686 binutils-2.41-20.fc40.i686 binutils-gold-2.41-20.fc40.i686 bzip2-1.0.8-16.fc39.i686 bzip2-libs-1.0.8-16.fc39.i686 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.i686 coreutils-common-9.4-1.fc40.i686 cpio-2.14-5.fc40.i686 cracklib-2.9.11-2.fc39.i686 crypto-policies-20231204-1.git1e3a2e4.fc40.noarch curl-8.5.0-1.fc40.i686 cyrus-sasl-lib-2.1.28-11.fc39.i686 debugedit-5.0-12.fc40.i686 diffutils-3.10-3.fc39.i686 dwz-0.15-3.fc39.i686 ed-1.19-4.fc39.i686 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.i686 elfutils-debuginfod-client-0.190-4.fc40.i686 elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.i686 elfutils-libs-0.190-4.fc40.i686 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.26.noarch fedora-release-common-40-0.26.noarch fedora-release-identity-basic-40-0.26.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.i686 file-libs-5.45-1.fc40.i686 filesystem-3.18-6.fc39.i686 findutils-4.9.0-6.fc40.i686 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.i686 gdb-minimal-14.1-1.fc40.i686 gdbm-1.23-4.fc39.i686 gdbm-libs-1.23-4.fc39.i686 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-30.fc40.i686 glibc-common-2.38.9000-30.fc40.i686 glibc-gconv-extra-2.38.9000-30.fc40.i686 glibc-minimal-langpack-2.38.9000-30.fc40.i686 gmp-6.2.1-5.fc39.i686 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch grep-3.11-5.fc40.i686 gzip-1.12-6.fc39.i686 info-7.1-1.fc40.i686 jansson-2.13.1-7.fc39.i686 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc40.i686 krb5-libs-1.21.2-2.fc40.i686 libacl-2.3.1-11.fc40.i686 libarchive-3.7.2-1.fc40.i686 libattr-2.5.1-9.fc40.i686 libblkid-2.39.3-1.fc40.i686 libbrotli-1.1.0-1.fc40.i686 libcap-2.69-1.fc40.i686 libcap-ng-0.8.4-2.fc40.i686 libcom_err-1.47.0-2.fc39.i686 libcurl-8.5.0-1.fc40.i686 libeconf-0.5.2-1.fc40.i686 libevent-2.1.12-9.fc39.i686 libfdisk-2.39.3-1.fc40.i686 libffi-3.4.4-5.fc40.i686 libgcc-13.2.1-6.fc40.i686 libgomp-13.2.1-6.fc40.i686 libidn2-2.3.4-3.fc39.i686 libmount-2.39.3-1.fc40.i686 libnghttp2-1.58.0-1.fc40.i686 libnsl2-2.0.0-6.fc39.i686 libpkgconf-1.9.5-2.fc39.i686 libpsl-0.21.2-4.fc39.i686 libpwquality-1.4.5-6.fc39.i686 libselinux-3.6-2.fc40.i686 libsemanage-3.6-1.fc40.i686 libsepol-3.6-1.fc40.i686 libsigsegv-2.14-5.fc39.i686 libsmartcols-2.39.3-1.fc40.i686 libssh-0.10.6-2.fc40.i686 libssh-config-0.10.6-2.fc40.noarch libstdc++-13.2.1-6.fc40.i686 libtasn1-4.19.0-3.fc39.i686 libtirpc-1.3.4-1.rc1.fc40.i686 libunistring-1.1-5.fc40.i686 libutempter-1.2.1-10.fc39.i686 libuuid-2.39.3-1.fc40.i686 libverto-0.3.2-6.fc39.i686 libxcrypt-4.4.36-3.fc40.i686 libxml2-2.12.3-1.fc40.i686 libzstd-1.5.5-4.fc39.i686 lua-libs-5.4.6-3.fc39.i686 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.i686 mpfr-4.2.1-1.fc40.i686 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.i686 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.i686 openssl-libs-3.1.4-1.fc40.i686 p11-kit-0.25.3-1.fc40.i686 p11-kit-trust-0.25.3-1.fc40.i686 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-9.fc40.i686 pam-libs-1.5.3-9.fc40.i686 patch-2.7.6-22.fc39.i686 pcre2-10.42-2.fc40.i686 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.i686 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.i686 popt-1.19-3.fc39.i686 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.11.0-1.fc40.noarch python-srpm-macros-3.12-5.fc40.noarch qt5-srpm-macros-5.15.12-1.fc40.noarch qt6-srpm-macros-6.6.1-3.fc40.noarch readline-8.2-4.fc39.i686 redhat-rpm-config-274-1.fc40.noarch rpm-4.19.1-2.fc40.i686 rpm-build-4.19.1-2.fc40.i686 rpm-build-libs-4.19.1-2.fc40.i686 rpm-libs-4.19.1-2.fc40.i686 rpm-sequoia-1.5.0-2.fc40.i686 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.i686 setup-2.14.5-1.fc40.noarch shadow-utils-4.14.0-2.fc40.i686 sqlite-libs-3.44.2-1.fc40.i686 systemd-libs-255.1-1.fc40.i686 tar-1.35-2.fc40.i686 unzip-6.0-62.fc39.i686 util-linux-2.39.3-1.fc40.i686 util-linux-core-2.39.3-1.fc40.i686 which-2.21-40.fc39.i686 xxhash-libs-0.8.2-1.fc39.i686 xz-5.4.5-1.fc40.i686 xz-libs-5.4.5-1.fc40.i686 zig-srpm-macros-1-1.fc40.noarch zip-3.0-39.fc40.i686 zlib-ng-compat-2.1.5-1.fc40.i686 zstd-1.5.5-4.fc39.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1704412800 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1704460365.205171/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-nzzuisfo/snakemake/snakemake.spec) Config(child) 1 minutes 7 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/snakemake-7.32.4-3.fc40.src.rpm) Config(fedora-rawhide-i686) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1704460365.205171/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1704460365.205171/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1704460365.205171/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1-2.fc40.x86_64 rpm-sequoia-1.5.0-2.fc40.x86_64 python3-dnf-4.18.2-1.fc40.noarch yum-4.18.2-1.fc40.noarch dnf5-5.1.10-2.fc40.x86_64 dnf5-plugins-5.1.10-2.fc40.x86_64 Finish: chroot init Start: build phase for snakemake-7.32.4-3.fc40.src.rpm Start: build setup for snakemake-7.32.4-3.fc40.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1704412800 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.src.rpm Updating and loading repositories: local 100% | 94.7 KiB/s | 3.8 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 67.6 KiB/s | 4.1 KiB | 00m00s Copr repository 100% | 33.1 KiB/s | 2.2 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: help2man noarch 1.49.3-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 415.6 KiB latexmk noarch 4.82-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 931.7 KiB librsvg2-tools i686 2.57.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.1 MiB make i686 1:4.4.1-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB python3-boto3 noarch 1.34.12-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB python3-configargparse noarch 1.7-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 240.0 KiB python3-devel i686 3.12.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB python3-pandas i686 1.5.3-7.fc39~bootstrap http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.8 MiB python3-pytest noarch 7.4.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 15.0 MiB 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texlive-symbol noarch 11:svn61719-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.3 KiB texlive-tabulary noarch 11:svn34368.0.10-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22.3 KiB texlive-tex i686 11:svn66186-77.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 391.9 KiB texlive-tex-gyre noarch 11:svn65956-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 24.2 MiB texlive-tex-gyre-math noarch 11:svn41264-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.7 MiB texlive-tex-ini-files noarch 11:svn40533-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.1 KiB texlive-texlive-common-doc noarch 11:svn54176-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 265.5 KiB texlive-texlive-en noarch 11:svn66572-77.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.9 MiB texlive-texlive-msg-translations noarch 11:svn66593-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB texlive-texlive-scripts noarch 11:svn66584-77.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 337.2 KiB texlive-texlive.infra noarch 11:svn66512-77.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB texlive-times noarch 11:svn61719-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 992.2 KiB texlive-tipa noarch 11:svn29349.1.3-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.7 MiB texlive-titlesec noarch 11:svn59845-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 97.8 KiB texlive-tools noarch 11:svn64892-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 403.2 KiB texlive-txfonts noarch 11:svn15878.0-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB texlive-ucharcat noarch 11:svn38907-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.2 KiB texlive-ucs noarch 11:svn64114-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB texlive-underscore noarch 11:svn18261.0-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.3 KiB texlive-unicode-data noarch 11:svn64423-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.1 MiB texlive-unicode-math noarch 11:svn61719-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 517.2 KiB texlive-uniquecounter noarch 11:svn53162-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 312.0 KiB texlive-upquote noarch 11:svn26059.v1.3-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 15.1 KiB texlive-url noarch 11:svn32528.3.4-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21.4 KiB texlive-utopia noarch 11:svn15878.0-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 540.6 KiB texlive-varwidth noarch 11:svn24104.0.92-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.5 KiB texlive-wasy noarch 11:svn53533-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 137.7 KiB texlive-wasy-type1 noarch 11:svn53534-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 332.4 KiB texlive-wasysym noarch 11:svn54080-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 23.9 KiB texlive-wrapfig noarch 11:svn61719-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 34.5 KiB texlive-xcolor noarch 11:svn63563-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 79.3 KiB texlive-xdvi i686 11:svn62387-77.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 794.6 KiB texlive-xetexconfig noarch 11:svn45845-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 305.0 B texlive-xifthen noarch 11:svn38929-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB texlive-xkeyval noarch 11:svn63616-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 69.3 KiB texlive-xpatch noarch 11:svn54563-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 26.8 KiB texlive-xstring noarch 11:svn65551-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 56.1 KiB texlive-xunicode noarch 11:svn30466.0.981-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 219.6 KiB texlive-zapfchan noarch 11:svn61719-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 178.1 KiB texlive-zapfding noarch 11:svn61719-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 79.5 KiB texlive-zref noarch 11:svn62977-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 816.8 KiB tzdata noarch 2023d-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB urw-base35-bookman-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-c059-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-d050000l-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 84.3 KiB urw-base35-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.3 KiB urw-base35-fonts-common noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.4 KiB urw-base35-gothic-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB urw-base35-nimbus-roman-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-nimbus-sans-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB urw-base35-p052-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44.2 KiB urw-base35-z003-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 390.8 KiB xdg-utils noarch 1.2.0~git20231511.21fb316-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 327.5 KiB xml-common noarch 0.6.3-62.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB xpdf-libs i686 1:4.04-10.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB xprop i686 1.2.5-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 52.9 KiB zziplib i686 0.13.72-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229.6 KiB Transaction Summary: Installing: 668 packages Total size of inbound packages is 373 MiB. Need to download 373 MiB. After this operation 1 GiB will be used (install 1 GiB, remove 0 B). [ 1/668] help2man-0:1.49.3-3.fc39.noar 100% | 2.3 MiB/s | 217.0 KiB | 00m00s [ 2/668] latexmk-0:4.82-1.fc40.noarch 100% | 13.3 MiB/s | 421.0 KiB | 00m00s [ 3/668] librsvg2-tools-0:2.57.1-1.fc4 100% | 12.4 MiB/s | 1.9 MiB | 00m00s [ 4/668] make-1:4.4.1-2.fc39.i686 100% | 20.5 MiB/s | 588.9 KiB | 00m00s [ 5/668] python3-devel-0:3.12.1-2.fc40 100% | 12.7 MiB/s | 273.9 KiB | 00m00s [ 6/668] texlive-xindy-11:svn65958-77. 100% | 9.0 MiB/s | 1.6 MiB | 00m00s [ 7/668] python3-sphinx-latex-1:7.2.6- 100% | 481.6 KiB/s | 10.6 KiB | 00m00s [ 8/668] python3-boto3-0:1.34.12-1.fc4 100% | 12.2 MiB/s | 337.6 KiB | 00m00s [ 9/668] python3-configargparse-0:1.7- 100% | 1.8 MiB/s | 52.2 KiB | 00m00s [ 10/668] python3-requests-mock-0:1.10. 100% | 1.1 MiB/s | 52.7 KiB | 00m00s [ 11/668] python3-pytest-0:7.4.3-1.fc40 100% | 32.2 MiB/s | 1.8 MiB | 00m00s [ 12/668] vim-filesystem-2:9.0.2190-1.f 100% | 885.7 KiB/s | 17.7 KiB | 00m00s [ 13/668] python3-pandas-0:1.5.3-7.fc39 100% | 55.8 MiB/s | 7.1 MiB | 00m00s [ 14/668] texlive-xetex-11:svn66203-77. 100% | 17.5 MiB/s | 1.2 MiB | 00m00s [ 15/668] perl-English-0:1.11-503.fc40. 100% | 769.2 KiB/s | 13.8 KiB | 00m00s [ 16/668] perl-Env-0:1.06-500.fc39.noar 100% | 926.1 KiB/s | 19.4 KiB | 00m00s [ 17/668] perl-File-Basename-0:2.86-503 100% | 757.4 KiB/s | 17.4 KiB | 00m00s [ 18/668] perl-File-Temp-1:0.231.100-50 100% | 2.9 MiB/s | 58.9 KiB | 00m00s [ 19/668] perl-Getopt-Long-1:2.57-1.fc4 100% | 3.2 MiB/s | 63.2 KiB | 00m00s [ 20/668] perl-POSIX-0:2.13-503.fc40.i6 100% | 4.7 MiB/s | 100.9 KiB | 00m00s [ 21/668] perl-PathTools-0:3.89-500.fc3 100% | 3.9 MiB/s | 83.2 KiB | 00m00s [ 22/668] perl-interpreter-4:5.38.2-503 100% | 3.3 MiB/s | 72.0 KiB | 00m00s [ 23/668] perl-libs-4:5.38.2-503.fc40.i 100% | 27.0 MiB/s | 2.3 MiB | 00m00s [ 24/668] clisp-0:2.49.93-35.20230718gi 100% | 29.3 MiB/s | 6.1 MiB | 00m00s [ 25/668] texlive-base-11:20230311-77.f 100% | 31.8 MiB/s | 2.6 MiB | 00m00s [ 26/668] fontconfig-0:2.15.0-1.fc40.i6 100% | 10.3 MiB/s | 264.6 KiB | 00m00s [ 27/668] texlive-kpathsea-11:svn66209- 100% | 25.2 MiB/s | 1.1 MiB | 00m00s [ 28/668] freetype-0:2.13.1-2.fc39.i686 100% | 14.1 MiB/s | 419.5 KiB | 00m00s [ 29/668] graphite2-0:1.3.14-13.fc40.i6 100% | 4.7 MiB/s | 96.2 KiB | 00m00s [ 30/668] libpaper-1:2.1.1-1.fc39.i686 100% | 1.3 MiB/s | 27.4 KiB | 00m00s [ 31/668] harfbuzz-0:8.3.0-2.fc40.i686 100% | 26.2 MiB/s | 1.0 MiB | 00m00s [ 32/668] libpng-2:1.6.40-1.fc40.i686 100% | 6.2 MiB/s | 126.7 KiB | 00m00s [ 33/668] teckit-0:2.5.12-1.fc40.i686 100% | 8.1 MiB/s | 390.2 KiB | 00m00s [ 34/668] texlive-atbegshi-11:svn53051- 100% | 12.8 MiB/s | 407.5 KiB | 00m00s [ 35/668] texlive-atveryend-11:svn53108 100% | 15.6 MiB/s | 383.9 KiB | 00m00s [ 36/668] texlive-babel-11:svn65823-70. 100% | 7.3 MiB/s | 359.7 KiB | 00m00s [ 37/668] texlive-cm-11:svn57963-70.fc4 100% | 7.2 MiB/s | 287.3 KiB | 00m00s [ 38/668] texlive-etex-11:svn66203-70.f 100% | 1.3 MiB/s | 27.1 KiB | 00m00s [ 39/668] texlive-everyshi-11:svn57001- 100% | 6.2 MiB/s | 145.8 KiB | 00m00s [ 40/668] texlive-firstaid-11:svn64892- 100% | 10.7 MiB/s | 273.6 KiB | 00m00s [ 41/668] libicu-0:73.2-3.fc40.i686 100% | 46.2 MiB/s | 10.7 MiB | 00m00s [ 42/668] texlive-graphics-def-11:svn64 100% | 1.1 MiB/s | 27.1 KiB | 00m00s [ 43/668] texlive-hyphen-base-11:svn664 100% | 1.4 MiB/s | 32.5 KiB | 00m00s [ 44/668] texlive-dvipdfmx-11:svn66203- 100% | 22.4 MiB/s | 3.0 MiB | 00m00s [ 45/668] texlive-l3kernel-11:svn66094- 100% | 9.1 MiB/s | 196.3 KiB | 00m00s [ 46/668] texlive-l3backend-11:svn65573 100% | 20.3 MiB/s | 895.9 KiB | 00m00s [ 47/668] texlive-l3packages-11:svn6572 100% | 1.3 MiB/s | 39.4 KiB | 00m00s [ 48/668] texlive-latex-fonts-11:svn288 100% | 1.6 MiB/s | 39.1 KiB | 00m00s [ 49/668] texlive-lib-11:20230311-77.fc 100% | 17.7 MiB/s | 525.2 KiB | 00m00s [ 50/668] texlive-plain-11:svn57963-70. 100% | 1.9 MiB/s | 42.3 KiB | 00m00s [ 51/668] texlive-tex-ini-files-11:svn4 100% | 744.7 KiB/s | 14.1 KiB | 00m00s [ 52/668] texlive-unicode-data-11:svn64 100% | 15.5 MiB/s | 365.3 KiB | 00m00s [ 53/668] texlive-xetexconfig-11:svn458 100% | 413.7 KiB/s | 9.9 KiB | 00m00s [ 54/668] texlive-amsmath-11:svn63514-7 100% | 1.9 MiB/s | 45.3 KiB | 00m00s [ 55/668] texlive-alphalph-11:svn53087- 100% | 14.0 MiB/s | 359.5 KiB | 00m00s [ 56/668] texlive-booktabs-11:svn53402- 100% | 825.1 KiB/s | 16.5 KiB | 00m00s [ 57/668] texlive-colortbl-11:svn64015- 100% | 819.1 KiB/s | 16.4 KiB | 00m00s [ 58/668] texlive-csquotes-11:svn64389- 100% | 1.7 MiB/s | 34.4 KiB | 00m00s [ 59/668] texlive-amsfonts-11:svn61937- 100% | 37.9 MiB/s | 3.6 MiB | 00m00s [ 60/668] texlive-enumitem-11:svn51423- 100% | 1.2 MiB/s | 26.3 KiB | 00m00s [ 61/668] texlive-fancyvrb-11:svn65585- 100% | 1.0 MiB/s | 25.2 KiB | 00m00s [ 62/668] texlive-hologo-11:svn61719-70 100% | 15.4 MiB/s | 585.2 KiB | 00m00s [ 63/668] texlive-hypdoc-11:svn65678-70 100% | 11.6 MiB/s | 333.8 KiB | 00m00s [ 64/668] texlive-psnfss-11:svn54694-70 100% | 1.2 MiB/s | 40.6 KiB | 00m00s [ 65/668] texlive-tools-11:svn64892-70. 100% | 1.4 MiB/s | 65.1 KiB | 00m00s [ 66/668] texlive-underscore-11:svn1826 100% | 459.0 KiB/s | 17.4 KiB | 00m00s [ 67/668] texlive-texlive-scripts-11:sv 100% | 2.7 MiB/s | 111.8 KiB | 00m00s [ 68/668] texlive-epstopdf-pkg-11:svn53 100% | 8.2 MiB/s | 362.9 KiB | 00m00s [ 69/668] texlive-pstricks-11:svn65346- 100% | 3.0 MiB/s | 110.0 KiB | 00m00s [ 70/668] texlive-epstopdf-11:svn66461- 100% | 853.3 KiB/s | 29.9 KiB | 00m00s [ 71/668] texlive-glyphlist-11:svn54074 100% | 996.5 KiB/s | 37.9 KiB | 00m00s [ 72/668] texlive-etoolbox-11:svn56554- 100% | 678.5 KiB/s | 24.4 KiB | 00m00s [ 73/668] expat-0:2.5.0-3.fc39.i686 100% | 2.9 MiB/s | 114.5 KiB | 00m00s [ 74/668] python3-sphinx-1:7.2.6-4.fc40 100% | 27.6 MiB/s | 2.5 MiB | 00m00s [ 75/668] texlive-lm-11:svn65956-70.fc4 100% | 23.1 MiB/s | 11.8 MiB | 00m01s [ 76/668] texlive-amscls-11:svn55378-70 100% | 12.0 MiB/s | 1.1 MiB | 00m00s [ 77/668] texlive-anyfontsize-11:svn170 100% | 430.5 KiB/s | 15.1 KiB | 00m00s [ 78/668] 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00m00s [283/668] texlive-ltxcmds-11:svn56421-7 100% | 11.5 MiB/s | 398.7 KiB | 00m00s [284/668] texlive-pdftexcmds-11:svn5577 100% | 13.6 MiB/s | 389.6 KiB | 00m00s [285/668] texlive-pdfescape-11:svn53082 100% | 10.1 MiB/s | 351.6 KiB | 00m00s [286/668] texlive-refcount-11:svn53164- 100% | 12.1 MiB/s | 333.7 KiB | 00m00s [287/668] texlive-rerunfilecheck-11:svn 100% | 9.2 MiB/s | 339.4 KiB | 00m00s [288/668] texlive-graphics-cfg-11:svn41 100% | 567.9 KiB/s | 11.4 KiB | 00m00s [289/668] texlive-stringenc-11:svn52982 100% | 16.1 MiB/s | 693.1 KiB | 00m00s [290/668] texlive-euenc-11:svn19795.0.1 100% | 948.3 KiB/s | 20.9 KiB | 00m00s [291/668] texlive-kastrup-11:svn15878.0 100% | 543.6 KiB/s | 11.4 KiB | 00m00s [292/668] texlive-luaotfload-11:svn6461 100% | 29.7 MiB/s | 1.2 MiB | 00m00s [293/668] texlive-xunicode-11:svn30466. 100% | 1.4 MiB/s | 42.9 KiB | 00m00s [294/668] texlive-currfile-11:svn64673- 100% | 564.4 KiB/s | 19.8 KiB | 00m00s [295/668] texlive-pgf-11:svn65553-70.fc 100% | 21.0 MiB/s | 816.0 KiB | 00m00s [296/668] potrace-0:1.16-10.fc39.i686 100% | 2.9 MiB/s | 121.3 KiB | 00m00s [297/668] gd-0:2.3.3-12.fc39.i686 100% | 5.7 MiB/s | 145.2 KiB | 00m00s [298/668] texlive-ae-11:svn15878.1.4-70 100% | 2.7 MiB/s | 95.2 KiB | 00m00s [299/668] texlive-babel-english-11:svn4 100% | 880.9 KiB/s | 19.4 KiB | 00m00s [300/668] texlive-bigintcalc-11:svn5317 100% | 8.4 MiB/s | 464.6 KiB | 00m00s [301/668] texlive-carlisle-11:svn59577- 100% | 712.5 KiB/s | 22.1 KiB | 00m00s [302/668] texlive-collection-basic-11:s 100% | 487.2 KiB/s | 10.2 KiB | 00m00s [303/668] texlive-fix2col-11:svn38770-7 100% | 693.5 KiB/s | 15.3 KiB | 00m00s [304/668] texlive-grfext-11:svn53024-70 100% | 7.5 MiB/s | 316.1 KiB | 00m00s [305/668] mupdf-0:1.23.7-3.fc40.i686 100% | 31.5 MiB/s | 11.8 MiB | 00m00s [306/668] texlive-hopatch-11:svn65491-7 100% | 4.7 MiB/s | 327.2 KiB | 00m00s [307/668] texlive-ltxmisc-11:svn21927.0 100% | 1.3 MiB/s | 26.6 KiB | 00m00s [308/668] texlive-mfnfss-11:svn46036-70 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texlive-eurosym-11:svn17265.1 100% | 1.5 MiB/s | 150.1 KiB | 00m00s [322/668] texlive-lm-math-11:svn36915.1 100% | 5.0 MiB/s | 446.3 KiB | 00m00s [323/668] texlive-mflogo-font-11:svn545 100% | 1.2 MiB/s | 30.4 KiB | 00m00s [324/668] texlive-ncntrsbk-11:svn61719- 100% | 11.0 MiB/s | 338.5 KiB | 00m00s [325/668] texlive-manfnt-font-11:svn457 100% | 1.0 MiB/s | 35.6 KiB | 00m00s [326/668] texlive-rsfs-11:svn15878.0-70 100% | 2.8 MiB/s | 68.1 KiB | 00m00s [327/668] texlive-pxfonts-11:svn15878.0 100% | 13.0 MiB/s | 494.2 KiB | 00m00s [328/668] texlive-tex-gyre-math-11:svn4 100% | 33.4 MiB/s | 1.4 MiB | 00m00s [329/668] texlive-txfonts-11:svn15878.0 100% | 21.4 MiB/s | 765.4 KiB | 00m00s [330/668] texlive-wasy-11:svn53533-70.f 100% | 1.7 MiB/s | 38.2 KiB | 00m00s [331/668] texlive-tipa-11:svn29349.1.3- 100% | 30.8 MiB/s | 2.8 MiB | 00m00s [332/668] texlive-wasysym-11:svn54080-7 100% | 839.1 KiB/s | 16.8 KiB | 00m00s [333/668] texlive-wasy-type1-11:svn5353 100% | 6.3 MiB/s | 266.5 KiB | 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texlive-xifthen-11:svn38929-7 100% | 794.9 KiB/s | 15.1 KiB | 00m00s [360/668] biber-0:2.19-3.fc39.noarch 100% | 10.5 MiB/s | 280.4 KiB | 00m00s [361/668] texlive-logreq-11:svn53003-70 100% | 954.7 KiB/s | 19.1 KiB | 00m00s [362/668] texlive-xstring-11:svn65551-7 100% | 1.2 MiB/s | 24.3 KiB | 00m00s [363/668] texlive-xpatch-11:svn54563-70 100% | 791.3 KiB/s | 17.4 KiB | 00m00s [364/668] texlive-zref-11:svn62977-70.f 100% | 11.3 MiB/s | 681.5 KiB | 00m00s [365/668] mpdecimal-0:2.5.1-7.fc39.i686 100% | 4.4 MiB/s | 91.1 KiB | 00m00s [366/668] libb2-0:0.98.1-9.fc39.i686 100% | 1.3 MiB/s | 28.4 KiB | 00m00s [367/668] perl-Symbol-0:1.09-503.fc40.n 100% | 803.1 KiB/s | 14.5 KiB | 00m00s [368/668] perl-meta-notation-0:5.38.2-5 100% | 391.3 KiB/s | 11.0 KiB | 00m00s [369/668] perl-mro-0:1.28-503.fc40.i686 100% | 1.6 MiB/s | 29.7 KiB | 00m00s [370/668] perl-overloading-0:0.02-503.f 100% | 731.3 KiB/s | 13.2 KiB | 00m00s [371/668] perl-Pod-Perldoc-0:3.28.01-50 100% | 4.1 MiB/s | 80.1 KiB | 00m00s 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00m00s [216/670] Installing perl-sigtrap-0:1.1 100% | 0.0 B/s | 11.4 KiB | 00m00s [217/670] Installing perl-Business-ISSN 100% | 21.5 MiB/s | 22.1 KiB | 00m00s [218/670] Installing perl-Class-Accesso 100% | 41.8 MiB/s | 42.8 KiB | 00m00s [219/670] Installing perl-File-Slurper- 100% | 29.3 MiB/s | 30.0 KiB | 00m00s [220/670] Installing perl-IO-String-0:1 100% | 0.0 B/s | 17.7 KiB | 00m00s [221/670] Installing perl-IPC-Run3-0:0. 100% | 60.6 MiB/s | 62.1 KiB | 00m00s [222/670] Installing perl-Regexp-Common 100% | 153.5 MiB/s | 471.5 KiB | 00m00s [223/670] Installing perl-Text-CSV-0:2. 100% | 340.7 MiB/s | 348.9 KiB | 00m00s [224/670] Installing perl-Text-Roman-0: 100% | 33.8 MiB/s | 34.6 KiB | 00m00s [225/670] Installing perl-XML-Writer-0: 100% | 67.0 MiB/s | 68.6 KiB | 00m00s [226/670] Installing perl-NTLM-0:1.09-3 100% | 31.9 MiB/s | 32.6 KiB | 00m00s [227/670] Installing perl-WWW-RobotRule 100% | 25.2 MiB/s | 25.8 KiB | 00m00s [228/670] Installing perl-MIME-Charset- 100% | 104.7 MiB/s | 107.2 KiB | 00m00s [229/670] Installing perl-Mail-Sender-1 100% | 158.6 MiB/s | 162.4 KiB | 00m00s [230/670] Installing perl-List-UtilsBy- 100% | 55.8 MiB/s | 57.1 KiB | 00m00s [231/670] Installing perl-List-AllUtils 100% | 66.3 MiB/s | 135.9 KiB | 00m00s [232/670] Installing perl-Convert-ASN1- 100% | 169.3 MiB/s | 173.3 KiB | 00m00s [233/670] Installing perl-ExtUtils-MM-U 100% | 0.0 B/s | 3.6 KiB | 00m00s [234/670] Installing perl-IO-HTML-0:1.0 100% | 45.6 MiB/s | 46.7 KiB | 00m00s [235/670] Installing perl-HTML-Tagset-0 100% | 0.0 B/s | 19.4 KiB | 00m00s [236/670] Installing perl-Class-Singlet 100% | 40.4 MiB/s | 41.3 KiB | 00m00s [237/670] Installing perl-File-Compare- 100% | 0.0 B/s | 6.0 KiB | 00m00s [238/670] Installing perl-Tie-Cycle-0:1 100% | 22.7 MiB/s | 23.2 KiB | 00m00s [239/670] Installing perl-Business-ISMN 100% | 36.6 MiB/s | 37.5 KiB | 00m00s [240/670] Installing perl-IPC-System-Si 100% | 71.7 MiB/s | 73.4 KiB | 00m00s [241/670] Installing perl-Tie-RefHash-0 100% | 34.9 MiB/s | 35.7 KiB | 00m00s [242/670] Installing perl-autodie-0:2.3 100% | 106.8 MiB/s | 218.8 KiB | 00m00s [243/670] Installing perl-deprecate-0:0 100% | 0.0 B/s | 6.9 KiB | 00m00s [244/670] Installing perl-Package-Gener 100% | 30.7 MiB/s | 31.5 KiB | 00m00s [245/670] Installing perl-MRO-Compat-0: 100% | 43.8 MiB/s | 44.8 KiB | 00m00s [246/670] Installing perl-Class-Method- 100% | 53.5 MiB/s | 109.5 KiB | 00m00s [247/670] Installing perl-Role-Tiny-0:2 100% | 61.9 MiB/s | 63.4 KiB | 00m00s [248/670] Installing perl-Math-Complex- 100% | 83.8 MiB/s | 85.8 KiB | 00m00s [249/670] Installing perl-Math-BigInt-1 100% | 311.5 MiB/s | 956.8 KiB | 00m00s [250/670] Installing perl-JSON-0:4.10-3 100% | 266.4 MiB/s | 272.7 KiB | 00m00s [251/670] Installing perl-Net-SMTP-SSL- 100% | 5.2 MiB/s | 5.3 KiB | 00m00s [252/670] Installing perl-MailTools-0:2 100% | 103.6 MiB/s | 212.1 KiB | 00m00s [253/670] Installing perl-Email-Date-Fo 100% | 25.3 MiB/s | 26.0 KiB | 00m00s [254/670] Installing perl-MIME-Types-0: 100% | 176.7 MiB/s | 180.9 KiB | 00m00s [255/670] Installing perl-MIME-Lite-0:3 100% | 243.0 MiB/s | 248.8 KiB | 00m00s [256/670] Installing perl-I18N-LangTags 100% | 81.6 MiB/s | 83.6 KiB | 00m00s [257/670] Installing perl-Locale-Makete 100% | 169.7 MiB/s | 173.8 KiB | 00m00s [258/670] Installing perl-Locale-Makete 100% | 0.0 B/s | 13.5 KiB | 00m00s [259/670] Installing perl-Params-Check- 100% | 27.9 MiB/s | 28.5 KiB | 00m00s [260/670] Installing perl-Number-Compar 100% | 0.0 B/s | 5.4 KiB | 00m00s [261/670] Installing perl-Text-Glob-0:0 100% | 9.0 MiB/s | 9.2 KiB | 00m00s [262/670] Installing perl-File-Find-Rul 100% | 43.2 MiB/s | 44.2 KiB | 00m00s [263/670] Installing perl-Class-Data-In 100% | 0.0 B/s | 7.0 KiB | 00m00s [264/670] Installing perl-Exception-Cla 100% | 92.3 MiB/s | 94.5 KiB | 00m00s [265/670] Installing perl-Class-Inspect 100% | 57.8 MiB/s | 59.2 KiB | 00m00s [266/670] Installing perl-DynaLoader-Fu 100% | 20.2 MiB/s | 20.7 KiB | 00m00s [267/670] Installing perl-Unicode-Norma 100% | 190.3 MiB/s | 389.7 KiB | 00m00s [268/670] Installing perl-version-8:0.9 100% | 63.8 MiB/s | 130.7 KiB | 00m00s [269/670] Installing perl-Time-HiRes-4: 100% | 118.2 MiB/s | 121.1 KiB | 00m00s [270/670] Installing perl-Compress-Raw- 100% | 169.6 MiB/s | 173.7 KiB | 00m00s [271/670] Installing perl-Sys-Hostname- 100% | 20.1 MiB/s | 20.6 KiB | 00m00s [272/670] Installing perl-Params-Util-0 100% | 29.5 MiB/s | 60.4 KiB | 00m00s [273/670] Installing perl-I18N-Langinfo 100% | 25.6 MiB/s | 26.2 KiB | 00m00s [274/670] Installing perl-Encode-Locale 100% | 0.0 B/s | 20.0 KiB | 00m00s [275/670] Installing perl-Clone-0:0.46- 100% | 32.6 MiB/s | 33.4 KiB | 00m00s [276/670] Installing perl-Data-Compare- 100% | 56.6 MiB/s | 58.0 KiB | 00m00s [277/670] Installing perl-Data-OptList- 100% | 50.9 MiB/s | 52.1 KiB | 00m00s [278/670] Installing perl-Sub-Exporter- 100% | 98.5 MiB/s | 201.7 KiB | 00m00s [279/670] Installing perl-Sub-Exporter- 100% | 28.2 MiB/s | 28.8 KiB | 00m00s [280/670] Installing perl-Devel-GlobalD 100% | 18.5 MiB/s | 19.0 KiB | 00m00s [281/670] Installing perl-File-ShareDir 100% | 57.8 MiB/s | 59.1 KiB | 00m00s [282/670] Installing perl-Data-Uniqid-0 100% | 5.6 MiB/s | 5.8 KiB | 00m00s [283/670] Installing perl-Mail-Sendmail 100% | 64.9 MiB/s | 66.5 KiB | 00m00s [284/670] Installing perl-Module-CoreLi 100% | 553.8 MiB/s | 1.1 MiB | 00m00s [285/670] Installing perl-Module-Metada 100% | 67.3 MiB/s | 68.9 KiB | 00m00s [286/670] Installing perl-Module-Load-C 100% | 0.0 B/s | 29.9 KiB | 00m00s [287/670] Installing perl-IPC-Cmd-2:1.0 100% | 83.8 MiB/s | 85.8 KiB | 00m00s [288/670] Installing perl-Unicode-UCD-0 100% | 200.2 MiB/s | 205.0 KiB | 00m00s [289/670] Installing perl-Text-BibTeX-0 100% | 127.6 MiB/s | 522.7 KiB | 00m00s [290/670] Installing perl-Unicode-Colla 100% | 305.7 MiB/s | 4.3 MiB | 00m00s [291/670] Installing perl-Devel-CallChe 100% | 37.6 MiB/s | 38.5 KiB | 00m00s [292/670] Installing perl-Params-Classi 100% | 51.4 MiB/s | 52.6 KiB | 00m00s [293/670] Installing perl-DateTime-Time 100% | 28.9 MiB/s | 29.6 KiB | 00m00s [294/670] Installing perl-DateTime-Time 100% | 25.2 MiB/s | 25.8 KiB | 00m00s [295/670] Installing perl-Text-Soundex- 100% | 51.1 MiB/s | 52.3 KiB | 00m00s [296/670] Installing perl-Unicode-LineB 100% | 89.0 MiB/s | 273.5 KiB | 00m00s [297/670] Installing perl-Params-Valida 100% | 77.9 MiB/s | 159.5 KiB | 00m00s [298/670] Installing perl-Sort-Key-0:1. 100% | 82.5 MiB/s | 84.5 KiB | 00m00s [299/670] Installing perl-autovivificat 100% | 61.4 MiB/s | 62.9 KiB | 00m00s [300/670] Installing perl-IPC-SysV-0:2. 100% | 41.0 MiB/s | 83.9 KiB | 00m00s [301/670] Installing perl-Sys-Syslog-0: 100% | 94.0 MiB/s | 96.2 KiB | 00m00s [302/670] Installing perl-Compress-Raw- 100% | 68.7 MiB/s | 70.4 KiB | 00m00s [303/670] Installing perl-IO-Compress-0 100% | 173.2 MiB/s | 886.6 KiB | 00m00s [304/670] Installing perl-HTTP-Message- 100% | 107.0 MiB/s | 219.2 KiB | 00m00s [305/670] Installing perl-HTTP-Negotiat 100% | 0.0 B/s | 28.6 KiB | 00m00s [306/670] Installing perl-Net-HTTP-0:6. 100% | 75.2 MiB/s | 77.1 KiB | 00m00s [307/670] Installing perl-HTTP-Cookies- 100% | 73.8 MiB/s | 75.6 KiB | 00m00s [308/670] Installing perl-HTML-Parser-0 100% | 95.2 MiB/s | 292.4 KiB | 00m00s [309/670] Installing perl-LWP-Protocol- 100% | 29.6 MiB/s | 30.3 KiB | 00m00s [310/670] Installing perl-libwww-perl-0 100% | 128.9 MiB/s | 528.1 KiB | 00m00s [311/670] Installing perl-XML-SAX-0:1.0 100% | 2.0 MiB/s | 125.7 KiB | 00m00s >>> Running post-install scriptlet: perl-XML-SAX-0:1.02-13.fc39.noarch >>> Stop post-install scriptlet: perl-XML-SAX-0:1.02-13.fc39.noarch [312/670] Installing perl-LDAP-1:0.68-1 100% | 133.9 MiB/s | 960.1 KiB | 00m00s [313/670] Installing perltidy-0:2023091 100% | 339.5 MiB/s | 3.4 MiB | 00m00s [314/670] Installing perl-XML-LibXML-1: 100% | 8.6 MiB/s | 993.3 KiB | 00m00s >>> Running trigger-install scriptlet: perl-XML-LibXML-1:2.0209-3.fc40.i686 >>> Stop trigger-install scriptlet: perl-XML-LibXML-1:2.0209-3.fc40.i686 [315/670] Installing perl-XML-Parser-0: 100% | 130.2 MiB/s | 666.6 KiB | 00m00s [316/670] Installing perl-XML-LibXML-Si 100% | 51.0 MiB/s | 52.2 KiB | 00m00s [317/670] Installing perl-XML-LibXSLT-0 100% | 70.9 MiB/s | 145.3 KiB | 00m00s [318/670] Installing perl-Sub-Identify- 100% | 34.8 MiB/s | 35.6 KiB | 00m00s [319/670] Installing perl-Filter-2:1.64 100% | 55.7 MiB/s | 171.2 KiB | 00m00s [320/670] Installing perl-encoding-4:3. 100% | 146.5 MiB/s | 150.0 KiB | 00m00s [321/670] Installing perl-open-0:1.13-5 100% | 0.0 B/s | 11.7 KiB | 00m00s [322/670] Installing perl-XML-XPath-0:1 100% | 68.2 MiB/s | 209.5 KiB | 00m00s [323/670] Installing texlive-epstopdf-1 100% | 39.6 MiB/s | 40.6 KiB | 00m00s [324/670] Installing texlive-epstopdf-p 100% | 378.9 MiB/s | 388.0 KiB | 00m00s [325/670] Installing texlive-cm-11:svn5 100% | 143.9 MiB/s | 1.0 MiB | 00m00s [326/670] Installing texlive-etex-11:sv 100% | 41.7 MiB/s | 42.7 KiB | 00m00s [327/670] Installing texlive-hyphen-bas 100% | 64.3 MiB/s | 65.9 KiB | 00m00s [328/670] Installing texlive-plain-11:s 100% | 111.1 MiB/s | 113.8 KiB | 00m00s [329/670] Installing texlive-tex-ini-fi 100% | 9.9 MiB/s | 10.1 KiB | 00m00s [330/670] Installing texlive-unicode-da 100% | 438.7 MiB/s | 3.1 MiB | 00m00s [331/670] Installing texlive-graphics-d 100% | 97.5 MiB/s | 99.9 KiB | 00m00s [332/670] Installing texlive-hyph-utf8- 100% | 74.8 MiB/s | 76.6 KiB | 00m00s [333/670] Installing texlive-knuth-lib- 100% | 51.9 MiB/s | 106.3 KiB | 00m00s [334/670] Installing texlive-gsftopk-11 100% | 46.6 MiB/s | 47.7 KiB | 00m00s [335/670] Installing texlive-luatex-11: 100% | 370.5 MiB/s | 9.6 MiB | 00m00s [336/670] Installing texlive-texlive.in 100% | 251.7 MiB/s | 1.0 MiB | 00m00s [337/670] Installing texlive-texlive-sc 100% | 113.6 MiB/s | 349.1 KiB | 00m00s [338/670] Installing texlive-kpathsea-1 100% | 344.9 MiB/s | 2.1 MiB | 00m00s [339/670] Installing texlive-iftex-11:s 100% | 29.6 MiB/s | 30.3 KiB | 00m00s [340/670] Installing texlive-amsmath-11 100% | 262.4 MiB/s | 268.7 KiB | 00m00s [341/670] Installing texlive-kvoptions- 100% | 269.3 MiB/s | 551.6 KiB | 00m00s [342/670] Installing texlive-url-11:svn 100% | 0.0 B/s | 22.1 KiB | 00m00s [343/670] Installing texlive-ltxcmds-11 100% | 415.6 MiB/s | 425.5 KiB | 00m00s [344/670] Installing texlive-atbegshi-1 100% | 434.6 MiB/s | 445.1 KiB | 00m00s [345/670] Installing texlive-atveryend- 100% | 200.8 MiB/s | 411.2 KiB | 00m00s [346/670] Installing texlive-babel-11:s 100% | 47.3 MiB/s | 2.2 MiB | 00m00s [347/670] Installing texlive-etex-pkg-1 100% | 0.0 B/s | 19.0 KiB | 00m00s [348/670] Installing texlive-etoolbox-1 100% | 66.1 MiB/s | 67.7 KiB | 00m00s [349/670] Installing texlive-pdftexcmds 100% | 415.6 MiB/s | 425.6 KiB | 00m00s [350/670] Installing texlive-latex-font 100% | 40.4 MiB/s | 124.2 KiB | 00m00s [351/670] Installing texlive-lm-11:svn6 100% | 407.6 MiB/s | 39.5 MiB | 00m00s [352/670] Installing texlive-amsfonts-1 100% | 232.4 MiB/s | 6.0 MiB | 00m00s [353/670] Installing texlive-auxhook-11 100% | 296.1 MiB/s | 303.2 KiB | 00m00s [354/670] Installing texlive-etexcmds-1 100% | 314.7 MiB/s | 322.3 KiB | 00m00s [355/670] Installing texlive-l3backend- 100% | 553.5 MiB/s | 1.1 MiB | 00m00s [356/670] Installing texlive-booktabs-1 100% | 0.0 B/s | 19.0 KiB | 00m00s [357/670] Installing texlive-hypdoc-11: 100% | 351.1 MiB/s | 359.5 KiB | 00m00s [358/670] Installing texlive-fancyhdr-1 100% | 31.9 MiB/s | 32.7 KiB | 00m00s [359/670] Installing texlive-footmisc-1 100% | 64.1 MiB/s | 65.6 KiB | 00m00s [360/670] Installing texlive-multido-11 100% | 19.2 MiB/s | 19.6 KiB | 00m00s [361/670] Installing texlive-palatino-1 100% | 140.1 MiB/s | 1.1 MiB | 00m00s [362/670] Installing texlive-zapfding-1 100% | 80.8 MiB/s | 82.7 KiB | 00m00s [363/670] Installing texlive-marvosym-1 100% | 91.9 MiB/s | 188.3 KiB | 00m00s [364/670] Installing texlive-infwarerr- 100% | 300.3 MiB/s | 307.5 KiB | 00m00s [365/670] Installing texlive-intcalc-11 100% | 461.7 MiB/s | 472.8 KiB | 00m00s [366/670] Installing texlive-kvsetkeys- 100% | 418.8 MiB/s | 428.8 KiB | 00m00s [367/670] Installing texlive-letltxmacr 100% | 305.3 MiB/s | 312.6 KiB | 00m00s [368/670] Installing texlive-pdfescape- 100% | 368.3 MiB/s | 377.2 KiB | 00m00s [369/670] Installing texlive-graphics-c 100% | 0.0 B/s | 3.9 KiB | 00m00s [370/670] Installing texlive-graphics-1 100% | 31.4 MiB/s | 128.7 KiB | 00m00s [371/670] Installing texlive-tools-11:s 100% | 201.0 MiB/s | 411.7 KiB | 00m00s [372/670] Installing texlive-xkeyval-11 100% | 69.9 MiB/s | 71.6 KiB | 00m00s [373/670] Installing texlive-geometry-1 100% | 49.1 MiB/s | 50.2 KiB | 00m00s [374/670] Installing texlive-colortbl-1 100% | 0.0 B/s | 21.8 KiB | 00m00s [375/670] Installing texlive-bigintcalc 100% | 504.7 MiB/s | 516.8 KiB | 00m00s [376/670] Installing texlive-natbib-11: 100% | 131.1 MiB/s | 134.2 KiB | 00m00s [377/670] Installing texlive-uniquecoun 100% | 306.1 MiB/s | 313.5 KiB | 00m00s [378/670] Installing texlive-fp-11:svn4 100% | 124.9 MiB/s | 127.9 KiB | 00m00s [379/670] Installing texlive-rerunfilec 100% | 354.8 MiB/s | 363.3 KiB | 00m00s [380/670] Installing texlive-bitset-11: 100% | 324.0 MiB/s | 663.5 KiB | 00m00s [381/670] Installing texlive-caption-11 100% | 297.1 MiB/s | 912.6 KiB | 00m00s [382/670] Installing texlive-carlisle-1 100% | 32.0 MiB/s | 32.8 KiB | 00m00s [383/670] Installing texlive-csquotes-1 100% | 110.6 MiB/s | 113.3 KiB | 00m00s [384/670] Installing texlive-sauerj-11: 100% | 27.9 MiB/s | 28.6 KiB | 00m00s [385/670] Installing texlive-catchfile- 100% | 312.5 MiB/s | 320.0 KiB | 00m00s [386/670] Installing texlive-ifplatform 100% | 0.0 B/s | 13.5 KiB | 00m00s [387/670] Installing texlive-babelbib-1 100% | 256.3 MiB/s | 787.2 KiB | 00m00s [388/670] Installing texlive-firstaid-1 100% | 291.8 MiB/s | 298.8 KiB | 00m00s [389/670] Installing texlive-hologo-11: 100% | 650.5 MiB/s | 666.1 KiB | 00m00s [390/670] Installing texlive-glyphlist- 100% | 0.0 B/s | 91.1 KiB | 00m00s [391/670] Installing texlive-ctablestac 100% | 0.0 B/s | 20.9 KiB | 00m00s [392/670] Installing texlive-luatexbase 100% | 14.7 MiB/s | 15.1 KiB | 00m00s [393/670] Installing texlive-titlesec-1 100% | 96.6 MiB/s | 98.9 KiB | 00m00s [394/670] Installing texlive-paralist-1 100% | 0.0 B/s | 24.1 KiB | 00m00s [395/670] Installing texlive-ragged2e-1 100% | 716.1 MiB/s | 733.3 KiB | 00m00s [396/670] Installing texlive-setspace-1 100% | 21.9 MiB/s | 22.4 KiB | 00m00s [397/670] Installing texlive-avantgar-1 100% | 155.2 MiB/s | 1.2 MiB | 00m00s [398/670] Installing texlive-bookman-11 100% | 154.2 MiB/s | 1.2 MiB | 00m00s [399/670] Installing texlive-charter-11 100% | 135.1 MiB/s | 415.0 KiB | 00m00s [400/670] Installing texlive-courier-11 100% | 152.5 MiB/s | 937.1 KiB | 00m00s [401/670] Installing texlive-helvetic-1 100% | 166.2 MiB/s | 1.8 MiB | 00m00s [402/670] Installing texlive-symbol-11: 100% | 40.0 MiB/s | 82.0 KiB | 00m00s [403/670] Installing texlive-times-11:s 100% | 142.6 MiB/s | 1.0 MiB | 00m00s [404/670] Installing texlive-utopia-11: 100% | 179.5 MiB/s | 551.4 KiB | 00m00s [405/670] Installing texlive-fpl-11:svn 100% | 317.9 MiB/s | 651.2 KiB | 00m00s [406/670] Installing texlive-mathpazo-1 100% | 57.0 MiB/s | 116.7 KiB | 00m00s [407/670] Installing texlive-psnfss-11: 100% | 38.9 MiB/s | 119.5 KiB | 00m00s [408/670] Installing texlive-latexconfi 100% | 0.0 B/s | 9.8 KiB | 00m00s [409/670] Installing texlive-bookmark-1 100% | 279.4 MiB/s | 572.2 KiB | 00m00s [410/670] Installing texlive-gettitlest 100% | 332.2 MiB/s | 340.1 KiB | 00m00s [411/670] Installing texlive-hycolor-11 100% | 403.5 MiB/s | 413.1 KiB | 00m00s [412/670] Installing texlive-kvdefineke 100% | 308.1 MiB/s | 315.5 KiB | 00m00s [413/670] Installing texlive-refcount-1 100% | 341.0 MiB/s | 349.2 KiB | 00m00s [414/670] Installing texlive-stringenc- 100% | 351.4 MiB/s | 1.1 MiB | 00m00s [415/670] Installing texlive-grfext-11: 100% | 321.3 MiB/s | 329.1 KiB | 00m00s [416/670] Installing texlive-lm-math-11 100% | 239.9 MiB/s | 736.9 KiB | 00m00s [417/670] Installing texlive-wasy-11:sv 100% | 138.7 MiB/s | 142.1 KiB | 00m00s [418/670] Installing texlive-lua-alt-ge 100% | 0.0 B/s | 4.3 KiB | 00m00s [419/670] Installing texlive-modes-11:s 100% | 382.8 MiB/s | 391.9 KiB | 00m00s [420/670] Installing texlive-placeins-1 100% | 5.2 MiB/s | 5.4 KiB | 00m00s [421/670] Installing texlive-zref-11:sv 100% | 401.4 MiB/s | 822.0 KiB | 00m00s [422/670] Installing texlive-wasy-type1 100% | 164.4 MiB/s | 336.7 KiB | 00m00s [423/670] Installing texlive-auto-pst-p 100% | 0.0 B/s | 15.6 KiB | 00m00s [424/670] Installing texlive-subfig-11: 100% | 0.0 B/s | 37.5 KiB | 00m00s [425/670] Installing texlive-euro-11:sv 100% | 0.0 B/s | 15.9 KiB | 00m00s [426/670] Installing texlive-breakurl-1 100% | 0.0 B/s | 17.9 KiB | 00m00s [427/670] Installing texlive-tabulary-1 100% | 0.0 B/s | 23.1 KiB | 00m00s [428/670] Installing texlive-fncychap-1 100% | 0.0 B/s | 38.4 KiB | 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Installing texlive-varwidth-1 100% | 0.0 B/s | 20.3 KiB | 00m00s [494/670] Installing texlive-dehyph-11: 100% | 235.5 MiB/s | 241.2 KiB | 00m00s [495/670] Installing texlive-grffile-11 100% | 371.8 MiB/s | 380.7 KiB | 00m00s [496/670] Installing texlive-index-11:s 100% | 60.7 MiB/s | 62.1 KiB | 00m00s [497/670] Installing texlive-parallel-1 100% | 0.0 B/s | 23.3 KiB | 00m00s [498/670] Installing texlive-pdfcol-11: 100% | 338.7 MiB/s | 346.8 KiB | 00m00s [499/670] Installing texlive-lua-uni-al 100% | 128.2 MiB/s | 131.3 KiB | 00m00s [500/670] Installing texlive-lualibs-11 100% | 251.2 MiB/s | 771.6 KiB | 00m00s [501/670] Installing texlive-luaotfload 100% | 456.6 MiB/s | 8.2 MiB | 00m00s [502/670] Installing texlive-beton-11:s 100% | 0.0 B/s | 12.5 KiB | 00m00s [503/670] Installing texlive-euler-11:s 100% | 0.0 B/s | 21.4 KiB | 00m00s [504/670] Installing texlive-float-11:s 100% | 0.0 B/s | 16.2 KiB | 00m00s [505/670] Installing texlive-ucharcat-1 100% | 0.0 B/s | 10.9 KiB | 00m00s 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potrace-0:1.16-10. 100% | 122.2 MiB/s | 250.2 KiB | 00m00s [570/670] Installing pixman-0:0.42.2-2. 100% | 244.3 MiB/s | 750.6 KiB | 00m00s [571/670] Installing cairo-0:1.18.0-1.f 100% | 306.8 MiB/s | 1.8 MiB | 00m00s [572/670] Installing harfbuzz-0:8.3.0-2 100% | 291.1 MiB/s | 2.6 MiB | 00m00s [573/670] Installing freetype-0:2.13.1- 100% | 211.9 MiB/s | 868.0 KiB | 00m00s [574/670] Installing fontconfig-0:2.15. 100% | 630.8 KiB/s | 785.4 KiB | 00m01s >>> Running post-install scriptlet: fontconfig-0:2.15.0-1.fc40.i686 >>> Stop post-install scriptlet: fontconfig-0:2.15.0-1.fc40.i686 [575/670] Installing cairo-gobject-0:1. 100% | 17.2 MiB/s | 35.3 KiB | 00m00s [576/670] Installing libgs-0:10.02.1-4. 100% | 431.4 MiB/s | 22.9 MiB | 00m00s [577/670] Installing ghostscript-tools- 100% | 0.0 B/s | 3.4 KiB | 00m00s [578/670] Installing ghostscript-tools- 100% | 4.9 MiB/s | 5.1 KiB | 00m00s [579/670] Installing ghostscript-0:10.0 100% | 37.5 MiB/s | 38.4 KiB | 00m00s [580/670] Installing texlive-pdftex-11: 100% | 274.3 MiB/s | 4.7 MiB | 00m00s [581/670] Installing texlive-l3packages 100% | 129.6 MiB/s | 265.5 KiB | 00m00s [582/670] Installing texlive-bera-11:sv 100% | 85.9 MiB/s | 791.2 KiB | 00m00s [583/670] Installing texlive-cm-super-1 100% | 525.3 MiB/s | 65.1 MiB | 00m00s [584/670] Installing texlive-xunicode-1 100% | 215.2 MiB/s | 220.3 KiB | 00m00s [585/670] Installing texlive-tipa-11:sv 100% | 316.0 MiB/s | 3.8 MiB | 00m00s [586/670] Installing texlive-xifthen-11 100% | 0.0 B/s | 15.2 KiB | 00m00s [587/670] Installing texlive-algorithms 100% | 38.2 MiB/s | 39.1 KiB | 00m00s [588/670] Installing texlive-latex-11:s 100% | 575.5 MiB/s | 40.3 MiB | 00m00s [589/670] Installing texlive-fontspec-1 100% | 322.8 MiB/s | 330.6 KiB | 00m00s [590/670] Installing texlive-xpatch-11: 100% | 26.9 MiB/s | 27.5 KiB | 00m00s [591/670] Installing texlive-l3kernel-1 100% | 340.6 MiB/s | 1.4 MiB | 00m00s [592/670] Installing texlive-currfile-1 100% | 34.1 MiB/s | 35.0 KiB | 00m00s 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Installing texlive-xindy-11:s 100% | 165.7 MiB/s | 4.1 MiB | 00m00s [670/670] Installing librsvg2-tools-0:2 100% | 140.1 KiB/s | 5.1 MiB | 00m37s >>> Running post-transaction scriptlet: texlive-base-11:20230311-77.fc39.i686 >>> Stop post-transaction scriptlet: texlive-base-11:20230311-77.fc39.i686 >>> Running post-transaction scriptlet: urw-base35-bookman-fonts-0:20200910-18.f >>> Stop post-transaction scriptlet: urw-base35-bookman-fonts-0:20200910-18.fc39 >>> Running post-transaction scriptlet: urw-base35-c059-fonts-0:20200910-18.fc39 >>> Stop post-transaction scriptlet: urw-base35-c059-fonts-0:20200910-18.fc39.no >>> Running post-transaction scriptlet: urw-base35-d050000l-fonts-0:20200910-18. >>> Stop post-transaction scriptlet: urw-base35-d050000l-fonts-0:20200910-18.fc3 >>> Running post-transaction scriptlet: urw-base35-gothic-fonts-0:20200910-18.fc >>> Stop post-transaction scriptlet: urw-base35-gothic-fonts-0:20200910-18.fc39. >>> Running post-transaction scriptlet: 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Finish: build setup for snakemake-7.32.4-3.fc40.src.rpm Start: rpmbuild snakemake-7.32.4-3.fc40.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1704412800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.b3HmNR + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf snakemake-7.32.4 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.32.4.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd snakemake-7.32.4 + rm -rf /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP . recursedown('.') recursedown('./.github') 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./tests/test_kubernetes.py: no change ./tests/test_linting.py: no change ./tests/test_persistence.py: no change ./tests/test_schema.py: no change ./tests/test_script.py: no change ./tests/test_slurm.py: no change ./tests/test_tes.py: no change ./tests/test_tibanna.py: no change ./tests/testapi.py: no change ./tests/tests.py: no change ./tests/test14/qsub.py: updating ./tests/test_benchmark/script.py: updating ./tests/test_conda_python_3_7_script/test_script.py: no change ./tests/test_conda_python_script/test_script.py: no change ./tests/test_filegraph/scripts/vis.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_a.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_all.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_b.py: no change ./tests/test_get_log_both/wrapper.py: no change ./tests/test_get_log_complex/wrapper.py: no change ./tests/test_get_log_none/wrapper.py: no change ./tests/test_get_log_stderr/wrapper.py: no change ./tests/test_get_log_stdout/wrapper.py: no change ./tests/test_github_issue1158/qsub.py: updating ./tests/test_github_issue627/job.py: updating ./tests/test_github_issue_14/local_script.py: no change ./tests/test_github_issue_14/pythonTest.py: updating ./tests/test_handover/script.py: no change ./tests/test_issue1046/my_wrapper/wrapper.py: no change ./tests/test_issue916/local_script.py: no change ./tests/test_issue916/pythonTest.py: updating ./tests/test_job_properties/qsub.py: updating ./tests/test_local_import/bar.py: no change ./tests/test_local_import/foo/__init__.py: no change ./tests/test_paramspace/scripts/simulate.py: no change ./tests/test_paramspace_single_wildcard/scripts/simulate.py: no change ./tests/test_prebuilt_conda_script/test.py: no change ./tests/test_prebuilt_conda_script/dummy_package/src/dummy/__init__.py: no change ./tests/test_prebuilt_conda_script/dummy_package/src/dummy/dummy.py: no change ./tests/test_report_display_code/test.py: no change ./tests/test_restartable_job_cmd_exit_1/qsub.py: updating ./tests/test_restartable_job_qsub_exit_1/qsub.py: updating ./tests/test_script/scripts/test.py: no change ./tests/test_script_py/scripts/test.py: no change ./tests/test_singularity/script.py: no change ./tests/test_singularity_module/script.py: no change ./tests/test_static_remote/S3MockedForStaticTest.py: no change ./tests/test_static_remote/__init__.py: no change ./tests/test_string_resources/qsub.py: updating ./tests/test_tibanna/cleanup.py: no change ./tests/test_tibanna/scripts/step2.py: no change 'misc/nano/README.md' -> 'README-nano.md' 'misc/vim/README.md' -> 'README-vim.md' Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.ClcbZO recursedown('./tests/test_symlink_temp/expected-results') recursedown('./tests/test_symlink_time_handling') recursedown('./tests/test_symlink_time_handling/expected-results') recursedown('./tests/test_temp') recursedown('./tests/test_temp/expected-results') recursedown('./tests/test_temp_expand') recursedown('./tests/test_temp_expand/expected-results') recursedown('./tests/test_template_engine') recursedown('./tests/test_template_engine/expected-results') recursedown('./tests/test_tes') recursedown('./tests/test_tes/expected-results') recursedown('./tests/test_threads') recursedown('./tests/test_threads/expected-results') recursedown('./tests/test_threads0') recursedown('./tests/test_threads0/expected-results') recursedown('./tests/test_tibanna') recursedown('./tests/test_tibanna/expected-results') recursedown('./tests/test_tibanna/scripts') recursedown('./tests/test_tmpdir') recursedown('./tests/test_tmpdir/expected-results') recursedown('./tests/test_touch') recursedown('./tests/test_touch/expected-results') recursedown('./tests/test_touch_pipeline_with_temp_dir') recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results') recursedown('./tests/test_touch_remote_prefix') recursedown('./tests/test_touch_remote_prefix/expected-results') recursedown('./tests/test_touch_with_directories') recursedown('./tests/test_touch_with_directories/expected-results') recursedown('./tests/test_unpack_dict') recursedown('./tests/test_unpack_dict/expected-results') recursedown('./tests/test_unpack_list') recursedown('./tests/test_unpack_list/expected-results') recursedown('./tests/test_until') recursedown('./tests/test_until/expected-results') recursedown('./tests/test_update_config') recursedown('./tests/test_update_config/expected-results') recursedown('./tests/test_url_include') recursedown('./tests/test_url_include/expected-results') recursedown('./tests/test_use_rule_same_module') recursedown('./tests/test_use_rule_same_module/expected-results') recursedown('./tests/test_validate') recursedown('./tests/test_validate/expected-results') recursedown('./tests/test_wildcard_count_ambiguity') recursedown('./tests/test_wildcard_count_ambiguity/expected-results') recursedown('./tests/test_wildcard_keyword') recursedown('./tests/test_wildcard_keyword/expected-results') recursedown('./tests/test_workflow_profile') recursedown('./tests/test_workflow_profile/dummy-general-profile') recursedown('./tests/test_workflow_profile/expected-results') recursedown('./tests/test_workflow_profile/workflow') recursedown('./tests/test_workflow_profile/workflow/profiles') recursedown('./tests/test_workflow_profile/workflow/profiles/default') recursedown('./tests/test_wrapper') recursedown('./tests/test_wrapper/expected-results') recursedown('./tests/test_xrootd') recursedown('./tests/test_yaml_config') recursedown('./tests/test_yaml_config/expected-results') + sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py + sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py + sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt + echo 'latex_engine = '\''xelatex'\''' + for editor in nano vim + cp -vp misc/nano/README.md README-nano.md + for editor in nano vim + cp -vp misc/vim/README.md README-vim.md + RPM_EC=0 ++ jobs -p + exit 0 + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement not satisfied: sphinx-argparse Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement not satisfied: sphinx_rtd_theme Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement not satisfied: myst-parser Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement not satisfied: appdirs Exiting dependency generation pass: all requirements files + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: local 100% | 97.2 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 58.2 KiB/s | 2.2 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 79.3 KiB/s | 4.1 KiB | 00m00s Repositories loaded. Package "librsvg2-tools-2.57.1-1.fc40.i686" is already installed. Package "texlive-xindy-11:svn65958-77.fc39.i686" is already installed. Package "help2man-1.49.3-3.fc39.noarch" is already installed. Package "latexmk-4.82-1.fc40.noarch" is already installed. Package "make-1:4.4.1-2.fc39.i686" is already installed. Package "pyproject-rpm-macros-1.11.0-1.fc40.noarch" is already installed. Package "python3-devel-3.12.1-2.fc40.i686" is already installed. Package "python3-sphinx-latex-1:7.2.6-4.fc40.noarch" is already installed. Package "python3-boto3-1.34.12-1.fc40.noarch" is already installed. Package "python3-configargparse-1.7-1.fc40.noarch" is already installed. Package "python3-docutils-0.20.1-1.fc40.noarch" is already installed. Package "python3-packaging-23.2-2.fc40.noarch" is already installed. Package "python3-pandas-1.5.3-7.fc39~bootstrap.i686" is already installed. Package "python3-pytest-7.4.3-1.fc40.noarch" is already installed. Package "python3-requests-mock-1.10.0-5.fc39.noarch" is already installed. Package "python3-sphinx-1:7.2.6-4.fc40.noarch" is already installed. Package "texlive-xetex-11:svn66203-77.fc39.i686" is already installed. Package "vim-filesystem-2:9.0.2190-1.fc40.noarch" is already installed. Package Arch Version Repository Size Installing: python3-appdirs noarch 1.4.4-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 68.9 KiB python3-myst-parser noarch 2.0.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 707.2 KiB python3-pip noarch 23.3.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.2 MiB python3-sphinx-argparse noarch 0.4.0-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 110.1 KiB python3-sphinx_rtd_theme noarch 2.0.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 317.9 KiB Installing dependencies: fontawesome4-fonts noarch 1:4.7.0-19.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 296.6 KiB google-roboto-slab-fonts noarch 1.100263-0.21.20150923git.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 699.2 KiB lato-fonts noarch 2.015-17.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.3 MiB libyaml i686 0.2.5-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 130.0 KiB python3-markdown-it-py noarch 3.0.0-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 496.2 KiB python3-mdit-py-plugins noarch 0.4.0-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 281.9 KiB python3-mdurl noarch 0.1.2-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.8 KiB python3-pyyaml i686 6.0.1-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 800.3 KiB python3-sphinxcontrib-jquery noarch 4.1-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 381.8 KiB Transaction Summary: Installing: 14 packages Total size of inbound packages is 7 MiB. Need to download 7 MiB. After this operation 30 MiB will be used (install 30 MiB, remove 0 B). [ 1/14] python3-appdirs-0:1.4.4-11.fc39 100% | 305.8 KiB/s | 22.9 KiB | 00m00s [ 2/14] python3-myst-parser-0:2.0.0-3.f 100% | 1.8 MiB/s | 184.5 KiB | 00m00s [ 3/14] python3-sphinx-argparse-0:0.4.0 100% | 1.4 MiB/s | 38.9 KiB | 00m00s [ 4/14] python3-pip-0:23.3.1-2.fc40.noa 100% | 24.2 MiB/s | 2.9 MiB | 00m00s [ 5/14] python3-sphinx_rtd_theme-0:2.0. 100% | 2.4 MiB/s | 73.7 KiB | 00m00s [ 6/14] fontawesome4-fonts-1:4.7.0-19.f 100% | 6.2 MiB/s | 204.2 KiB | 00m00s [ 7/14] google-roboto-slab-fonts-0:1.10 100% | 12.3 MiB/s | 238.8 KiB | 00m00s [ 8/14] python3-sphinxcontrib-jquery-0: 100% | 3.8 MiB/s | 113.4 KiB | 00m00s [ 9/14] python3-markdown-it-py-0:3.0.0- 100% | 5.7 MiB/s | 164.5 KiB | 00m00s [10/14] python3-mdit-py-plugins-0:0.4.0 100% | 5.5 MiB/s | 100.5 KiB | 00m00s [11/14] python3-pyyaml-0:6.0.1-11.fc39. 100% | 9.7 MiB/s | 219.5 KiB | 00m00s [12/14] python3-mdurl-0:0.1.2-4.fc39.no 100% | 1.2 MiB/s | 25.7 KiB | 00m00s [13/14] libyaml-0:0.2.5-12.fc39.i686 100% | 3.0 MiB/s | 61.5 KiB | 00m00s [14/14] lato-fonts-0:2.015-17.fc39.noar 100% | 35.3 MiB/s | 3.1 MiB | 00m00s -------------------------------------------------------------------------------- [14/14] Total 100% | 33.3 MiB/s | 7.4 MiB | 00m00s Running transaction [ 1/16] Verify package files 100% | 560.0 B/s | 14.0 B | 00m00s [ 2/16] Prepare transaction 100% | 189.0 B/s | 14.0 B | 00m00s [ 3/16] Installing python3-mdurl-0:0.1. 100% | 22.5 MiB/s | 46.1 KiB | 00m00s [ 4/16] Installing python3-markdown-it- 100% | 75.4 MiB/s | 540.1 KiB | 00m00s [ 5/16] Installing python3-mdit-py-plug 100% | 43.3 MiB/s | 310.4 KiB | 00m00s [ 6/16] Installing python3-sphinxcontri 100% | 188.0 MiB/s | 385.0 KiB | 00m00s [ 7/16] Installing lato-fonts-0:2.015-1 100% | 323.8 MiB/s | 11.3 MiB | 00m00s [ 8/16] Installing google-roboto-slab-f 100% | 228.2 MiB/s | 701.0 KiB | 00m00s [ 9/16] Installing fontawesome4-fonts-1 100% | 145.4 MiB/s | 297.8 KiB | 00m00s [10/16] Installing python3-sphinx_rtd_t 100% | 47.2 MiB/s | 338.4 KiB | 00m00s [11/16] Installing python3-sphinx-argpa 100% | 27.9 MiB/s | 114.2 KiB | 00m00s [12/16] Installing python3-pip-0:23.3.1 100% | 170.7 MiB/s | 14.5 MiB | 00m00s [13/16] Installing python3-appdirs-0:1. 100% | 69.4 MiB/s | 71.1 KiB | 00m00s [14/16] Installing libyaml-0:0.2.5-12.f 100% | 128.3 MiB/s | 131.4 KiB | 00m00s [15/16] Installing python3-pyyaml-0:6.0 100% | 159.0 MiB/s | 813.9 KiB | 00m00s [16/16] Installing python3-myst-parser- 100% | 7.0 MiB/s | 728.1 KiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-30.fc40.i686 >>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-30.fc40.i686 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-1.fc40.i686 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-1.fc40.i686 Warning: skipped PGP checks for 14 package(s). Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1704412800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.wFHfie + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement satisfied: sphinx-argparse (installed: sphinx-argparse 0.4.0) Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement satisfied: sphinx_rtd_theme (installed: sphinx_rtd_theme 2.0.0) Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement satisfied: myst-parser (installed: myst-parser 2.0.0) Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info creating snakemake.egg-info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt writing manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement not satisfied: wheel Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: local 100% | 90.2 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 28.3 KiB/s | 2.2 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 69.8 KiB/s | 4.1 KiB | 00m00s Repositories loaded. Package "librsvg2-tools-2.57.1-1.fc40.i686" is already installed. Package "texlive-xindy-11:svn65958-77.fc39.i686" is already installed. Package "help2man-1.49.3-3.fc39.noarch" is already installed. Package "latexmk-4.82-1.fc40.noarch" is already installed. Package "make-1:4.4.1-2.fc39.i686" is already installed. Package "pyproject-rpm-macros-1.11.0-1.fc40.noarch" is already installed. Package "python3-devel-3.12.1-2.fc40.i686" is already installed. Package "python3-sphinx-latex-1:7.2.6-4.fc40.noarch" is already installed. Package "python3-appdirs-1.4.4-11.fc39.noarch" is already installed. Package "python3-boto3-1.34.12-1.fc40.noarch" is already installed. Package "python3-configargparse-1.7-1.fc40.noarch" is already installed. Package "python3-docutils-0.20.1-1.fc40.noarch" is already installed. Package "python3-myst-parser-2.0.0-3.fc40.noarch" is already installed. Package "python3-packaging-23.2-2.fc40.noarch" is already installed. Package "python3-pandas-1.5.3-7.fc39~bootstrap.i686" is already installed. Package "python3-pip-23.3.1-2.fc40.noarch" is already installed. Package "python3-pytest-7.4.3-1.fc40.noarch" is already installed. Package "python3-requests-mock-1.10.0-5.fc39.noarch" is already installed. Package "python3-setuptools-68.2.2-1.fc40.noarch" is already installed. Package "python3-sphinx-1:7.2.6-4.fc40.noarch" is already installed. Package "python3-sphinx-argparse-0.4.0-4.fc39.noarch" is already installed. Package "python3-sphinx_rtd_theme-2.0.0-1.fc40.noarch" is already installed. Package "texlive-xetex-11:svn66203-77.fc39.i686" is already installed. Package "vim-filesystem-2:9.0.2190-1.fc40.noarch" is already installed. Package Arch Version Repository Size Installing: python3-wheel noarch 1:0.41.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 507.1 KiB Transaction Summary: Installing: 1 packages Total size of inbound packages is 148 KiB. Need to download 148 KiB. After this operation 507 KiB will be used (install 507 KiB, remove 0 B). [1/1] python3-wheel-1:0.41.2-1.fc40.noa 100% | 1.6 MiB/s | 147.5 KiB | 00m00s -------------------------------------------------------------------------------- [1/1] Total 100% | 1.6 MiB/s | 147.5 KiB | 00m00s Running transaction [1/3] Verify package files 100% | 0.0 B/s | 1.0 B | 00m00s [2/3] Prepare transaction 100% | 32.0 B/s | 1.0 B | 00m00s [3/3] Installing python3-wheel-1:0.41.2 100% | 8.2 MiB/s | 526.1 KiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-30.fc40.i686 >>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-30.fc40.i686 Warning: skipped PGP checks for 1 package(s). Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1704412800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.GnqJOw + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement satisfied: sphinx-argparse (installed: sphinx-argparse 0.4.0) Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement satisfied: sphinx_rtd_theme (installed: sphinx_rtd_theme 2.0.0) Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement satisfied: myst-parser (installed: myst-parser 2.0.0) Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-7.32.4/snakemake-7.32.4.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: connection-pool >=0.0.3 Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: datrie Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: gitpython Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: humanfriendly Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.2) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: jsonschema Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: nbformat Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: psutil Handling pulp >=2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pulp >=2.0 Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests (installed: requests 2.28.2) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: reretry Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: smart-open >=3.0 Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: stopit Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: tabulate Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: throttler Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: toposort >=1.10 Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: wrapt Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: yte <2.0,>=1.5.1 Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-storage-blob ; extra == 'azure' Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-batch ; extra == 'azure' Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-core ; extra == 'azure' Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-identity ; extra == 'azure' Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-mgmt-batch ; extra == 'azure' Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: google-api-python-client ; extra == 'google-cloud' Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: google-cloud-storage ; extra == 'google-cloud' Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: google-crc32c ; extra == 'google-cloud' Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: oauth2client ; extra == 'google-cloud' Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: slacker ; extra == 'messaging' Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires + rm -rfv snakemake-7.32.4.dist-info/ removed 'snakemake-7.32.4.dist-info/AUTHORS.rst' removed 'snakemake-7.32.4.dist-info/LICENSE.md' removed 'snakemake-7.32.4.dist-info/METADATA' removed 'snakemake-7.32.4.dist-info/entry_points.txt' removed 'snakemake-7.32.4.dist-info/top_level.txt' removed directory 'snakemake-7.32.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: local 100% | 88.1 KiB/s | 3.8 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 71.1 KiB/s | 4.1 KiB | 00m00s Copr repository 100% | 27.3 KiB/s | 2.2 KiB | 00m00s Repositories loaded. Package "librsvg2-tools-2.57.1-1.fc40.i686" is already installed. Package "texlive-xindy-11:svn65958-77.fc39.i686" is already installed. Package "help2man-1.49.3-3.fc39.noarch" is already installed. Package "latexmk-4.82-1.fc40.noarch" is already installed. Package "make-1:4.4.1-2.fc39.i686" is already installed. Package "pyproject-rpm-macros-1.11.0-1.fc40.noarch" is already installed. Package "python3-devel-3.12.1-2.fc40.i686" is already installed. Package "python3-sphinx-latex-1:7.2.6-4.fc40.noarch" is already installed. Package "python3-appdirs-1.4.4-11.fc39.noarch" is already installed. Package "python3-boto3-1.34.12-1.fc40.noarch" is already installed. Package "python3-configargparse-1.7-1.fc40.noarch" is already installed. Package "python3-docutils-0.20.1-1.fc40.noarch" is already installed. Package "python3-myst-parser-2.0.0-3.fc40.noarch" is already installed. Package "python3-packaging-23.2-2.fc40.noarch" is already installed. 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 479.9 KiB Transaction Summary: Installing: 90 packages Total size of inbound packages is 27 MiB. Need to download 27 MiB. After this operation 191 MiB will be used (install 191 MiB, remove 0 B). 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python3-googleapis-common-proto 100% | 8.5 MiB/s | 182.4 KiB | 00m00s [53/90] python3-grpcio-status-0:1.48.4- 100% | 779.1 KiB/s | 21.8 KiB | 00m00s [54/90] python3-grpcio-0:1.48.4-30.fc40 100% | 45.4 MiB/s | 2.5 MiB | 00m00s [55/90] python3-protobuf-0:3.19.6-6.fc3 100% | 11.7 MiB/s | 396.9 KiB | 00m00s [56/90] python3-google-auth-httplib2-0: 100% | 1.0 MiB/s | 20.7 KiB | 00m00s [57/90] python3-zombie-imp-0:0.0.2-3.fc 100% | 1.7 MiB/s | 28.9 KiB | 00m00s [58/90] python3-pycparser-0:2.20-12.fc4 100% | 7.1 MiB/s | 146.3 KiB | 00m00s [59/90] python3-uritemplate-0:4.1.1-6.f 100% | 1.6 MiB/s | 34.8 KiB | 00m00s [60/90] python3-msrest-0:0.7.1-8.202210 100% | 7.4 MiB/s | 136.9 KiB | 00m00s [61/90] python3-azure-common-1:1.1.28-6 100% | 1.3 MiB/s | 32.8 KiB | 00m00s [62/90] python3-cryptography-0:41.0.5-2 100% | 35.7 MiB/s | 1.3 MiB | 00m00s [63/90] python3-azure-mgmt-core-1:1.3.2 100% | 1.3 MiB/s | 38.6 KiB | 00m00s [64/90] python3-msal-0:1.26.0-2.fc40.no 100% | 7.9 MiB/s | 170.3 KiB | 00m00s 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[78/90] git-core-0:2.43.0-1.fc40.i686 100% | 30.2 MiB/s | 4.6 MiB | 00m00s [79/90] python3-jwt+crypto-0:2.6.0-4.fc 100% | 405.2 KiB/s | 8.9 KiB | 00m00s [80/90] python3-jwt-0:2.6.0-4.fc39.noar 100% | 2.6 MiB/s | 53.7 KiB | 00m00s [81/90] c-ares-0:1.22.1-1.fc40.i686 100% | 5.8 MiB/s | 149.4 KiB | 00m00s [82/90] abseil-cpp-0:20230802.1-2.fc40. 100% | 26.3 MiB/s | 726.3 KiB | 00m00s [83/90] grpc-data-0:1.48.4-30.fc40.noar 100% | 864.3 KiB/s | 23.3 KiB | 00m00s [84/90] libedit-0:3.1-48.20230828cvs.fc 100% | 6.0 MiB/s | 110.1 KiB | 00m00s [85/90] re2-1:20220601-3.fc39.i686 100% | 9.3 MiB/s | 210.4 KiB | 00m00s [86/90] python3-smmap-0:5.0.0-6.fc39.no 100% | 2.3 MiB/s | 55.2 KiB | 00m00s [87/90] openssh-0:9.3p1-13.fc40.1.i686 100% | 16.7 MiB/s | 445.6 KiB | 00m00s [88/90] libfido2-0:1.14.0-1.fc40.i686 100% | 3.5 MiB/s | 104.8 KiB | 00m00s [89/90] libcbor-0:0.10.2-3.fc40.i686 100% | 1.4 MiB/s | 36.5 KiB | 00m00s [90/90] python3-oauthlib-0:3.2.2-1.fc40 100% | 7.3 MiB/s | 208.2 KiB | 00m00s -------------------------------------------------------------------------------- [90/90] Total 100% | 30.2 MiB/s | 27.1 MiB | 00m01s Running transaction [ 1/92] Verify package files 100% | 947.0 B/s | 90.0 B | 00m00s [ 2/92] Prepare transaction 100% | 789.0 B/s | 90.0 B | 00m00s [ 3/92] Installing python3-pyasn1-0:0.5 100% | 126.2 MiB/s | 904.4 KiB | 00m00s [ 4/92] Installing python3-rsa-0:4.9-3. 100% | 82.0 MiB/s | 252.1 KiB | 00m00s [ 5/92] Installing python3-pyasn1-modul 100% | 149.0 MiB/s | 1.8 MiB | 00m00s [ 6/92] Installing python3-azure-common 100% | 42.4 MiB/s | 86.8 KiB | 00m00s [ 7/92] Installing python3-attrs-0:23.1 100% | 96.1 MiB/s | 393.6 KiB | 00m00s [ 8/92] Installing python3-traitlets-0: 100% | 154.0 MiB/s | 946.4 KiB | 00m00s [ 9/92] Installing python3-oauthlib-0:3 100% | 103.6 MiB/s | 1.0 MiB | 00m00s [10/92] Installing python3-requests-oau 100% | 47.9 MiB/s | 147.1 KiB | 00m00s [11/92] Installing python3-smmap-0:5.0. 100% | 100.5 MiB/s | 205.9 KiB | 00m00s [12/92] 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Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1704412800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.xonnhT + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement satisfied: sphinx-argparse (installed: sphinx-argparse 0.4.0) Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement satisfied: sphinx_rtd_theme (installed: sphinx_rtd_theme 2.0.0) Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement satisfied: myst-parser (installed: myst-parser 2.0.0) Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-7.32.4/snakemake-7.32.4.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.2) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.1) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.5) Handling pulp >=2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp >=2.0 (installed: pulp 2.7.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests (installed: requests 2.28.2) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open >=3.0 (installed: smart-open 6.4.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort >=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.4) Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-storage-blob ; extra == 'azure' (installed: azure-storage-blob 12.14.1) Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-batch ; extra == 'azure' (installed: azure-batch 14.0.0) Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-core ; extra == 'azure' (installed: azure-core 1.28.0) Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-identity ; extra == 'azure' (installed: azure-identity 1.14.0) Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-mgmt-batch ; extra == 'azure' (installed: azure-mgmt-batch 17.0.0) Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-api-python-client ; extra == 'google-cloud' (installed: google-api-python-client 2.112.0) Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-cloud-storage ; extra == 'google-cloud' (installed: google-cloud-storage 2.14.0) Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-crc32c ; extra == 'google-cloud' (installed: google-crc32c 1.1.2) Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: oauth2client ; extra == 'google-cloud' (installed: oauth2client 4.1.3) Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slacker ; extra == 'messaging' (installed: slacker 0.14.0) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires + rm -rfv snakemake-7.32.4.dist-info/ removed 'snakemake-7.32.4.dist-info/AUTHORS.rst' removed 'snakemake-7.32.4.dist-info/LICENSE.md' removed 'snakemake-7.32.4.dist-info/METADATA' removed 'snakemake-7.32.4.dist-info/top_level.txt' removed 'snakemake-7.32.4.dist-info/entry_points.txt' removed directory 'snakemake-7.32.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: local 100% | 102.4 KiB/s | 3.8 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 73.6 KiB/s | 4.1 KiB | 00m00s Copr repository 100% | 41.4 KiB/s | 2.2 KiB | 00m00s Repositories loaded. Package "librsvg2-tools-2.57.1-1.fc40.i686" is already installed. Package "texlive-xindy-11:svn65958-77.fc39.i686" is already installed. Package "help2man-1.49.3-3.fc39.noarch" is already installed. Package "latexmk-4.82-1.fc40.noarch" is already installed. Package "make-1:4.4.1-2.fc39.i686" is already installed. Package "pyproject-rpm-macros-1.11.0-1.fc40.noarch" is already installed. Package "python3-devel-3.12.1-2.fc40.i686" is already installed. Package "python3-sphinx-latex-1:7.2.6-4.fc40.noarch" is already installed. Package "python3-appdirs-1.4.4-11.fc39.noarch" is already installed. Package "python3-azure-batch-14.0.0-1.fc39.noarch" is already installed. Package "python3-azure-core-2:1.28.0-3.fc39.noarch" is already installed. Package "python3-azure-identity-1:1.14.0-1.fc40.noarch" is already installed. Package "python3-azure-mgmt-batch-17.0.0-5.fc39.noarch" is already installed. Package "python3-azure-storage-blob-12.14.1-4.fc39.noarch" is already installed. Package "python3-boto3-1.34.12-1.fc40.noarch" is already installed. Package "python3-configargparse-1.7-1.fc40.noarch" is already installed. Package "python3-connection_pool-0.0.3-9.fc39.noarch" is already installed. Package "python3-datrie-0.8.2-22.fc40.i686" is already installed. Package "python3-docutils-0.20.1-1.fc40.noarch" is already installed. Package "python3-GitPython-3.1.40-1.fc40.noarch" is already installed. Package "python3-google-api-client-2:2.112.0-1.fc40.noarch" is already installed. Package "python3-google-cloud-storage-2.14.0-2.fc40.noarch" is already installed. Package "python3-google-crc32c-1.1.2-9.fc39.i686" is already installed. Package "python3-humanfriendly-10.0-8.fc39.noarch" is already installed. Package "python3-jsonschema-4.19.1-1.fc40.noarch" is already installed. Package "python3-myst-parser-2.0.0-3.fc40.noarch" is already installed. Package "python3-nbformat-5.9.1-2.fc39.noarch" is already installed. Package "python3-oauth2client-4.1.3-23.fc39.noarch" is already installed. Package "python3-packaging-23.2-2.fc40.noarch" is already installed. Package "python3-pandas-1.5.3-7.fc39~bootstrap.i686" is already installed. Package "python3-pip-23.3.1-2.fc40.noarch" is already installed. Package "python3-psutil-5.9.5-2.fc40.i686" is already installed. Package "python3-pulp-2.7.0-3.fc39.noarch" is already installed. Package "python3-pygments-2.17.2-1.fc40.noarch" is already installed.Nothing to do. Package "python3-pytest-7.4.3-1.fc40.noarch" is already installed. Package "python3-pyyaml-6.0.1-11.fc39.i686" is already installed. Package "python3-requests-2.28.2-7.fc40.noarch" is already installed. Package "python3-requests-mock-1.10.0-5.fc39.noarch" is already installed. Package "python3-reretry-0.11.8-6.fc40.noarch" is already installed. Package "python3-setuptools-68.2.2-1.fc40.noarch" is already installed. Package "python3-slacker-0.14.0-12.fc39.noarch" is already installed. Package "python3-smart_open-6.4.0-1.fc40.noarch" is already installed. Package "python3-sphinx-1:7.2.6-4.fc40.noarch" is already installed. Package "python3-sphinx-argparse-0.4.0-4.fc39.noarch" is already installed. Package "python3-sphinx_rtd_theme-2.0.0-1.fc40.noarch" is already installed. Package "python3-stopit-1.1.2-8.fc39.noarch" is already installed. Package "python3-tabulate-0.9.0-4.fc39.noarch" is already installed. Package "python3-throttler-1.2.2-7.fc40.noarch" is already installed. Package "python3-toposort-1.10-8.fc40.noarch" is already installed. Package "python3-wheel-1:0.41.2-1.fc40.noarch" is already installed. Package "python3-wrapt-1.16.0-1.fc40.i686" is already installed. Package "texlive-xetex-11:svn66203-77.fc39.i686" is already installed. Package "vim-filesystem-2:9.0.2190-1.fc40.noarch" is already installed. Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1704412800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.YsnDM1 + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement satisfied: sphinx-argparse (installed: sphinx-argparse 0.4.0) Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement satisfied: sphinx_rtd_theme (installed: sphinx_rtd_theme 2.0.0) Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement satisfied: myst-parser (installed: myst-parser 2.0.0) Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-7.32.4/snakemake-7.32.4.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.2) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.1) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.5) Handling pulp >=2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp >=2.0 (installed: pulp 2.7.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests (installed: requests 2.28.2) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open >=3.0 (installed: smart-open 6.4.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort >=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.4) Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-storage-blob ; extra == 'azure' (installed: azure-storage-blob 12.14.1) Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-batch ; extra == 'azure' (installed: azure-batch 14.0.0) Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-core ; extra == 'azure' (installed: azure-core 1.28.0) Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-identity ; extra == 'azure' (installed: azure-identity 1.14.0) Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-mgmt-batch ; extra == 'azure' (installed: azure-mgmt-batch 17.0.0) Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-api-python-client ; extra == 'google-cloud' (installed: google-api-python-client 2.112.0) Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-cloud-storage ; extra == 'google-cloud' (installed: google-cloud-storage 2.14.0) Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-crc32c ; extra == 'google-cloud' (installed: google-crc32c 1.1.2) Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: oauth2client ; extra == 'google-cloud' (installed: oauth2client 4.1.3) Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slacker ; extra == 'messaging' (installed: slacker 0.14.0) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires + rm -rfv snakemake-7.32.4.dist-info/ removed 'snakemake-7.32.4.dist-info/AUTHORS.rst' removed 'snakemake-7.32.4.dist-info/LICENSE.md' removed 'snakemake-7.32.4.dist-info/METADATA' removed 'snakemake-7.32.4.dist-info/entry_points.txt' removed 'snakemake-7.32.4.dist-info/top_level.txt' removed directory 'snakemake-7.32.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.KtCJGd + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-7.32.4 + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir Processing /builddir/build/BUILD/snakemake-7.32.4 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-oc_rk3xh/snakemake.egg-info writing /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-oc_rk3xh/snakemake.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-oc_rk3xh/snakemake.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-oc_rk3xh/snakemake.egg-info/entry_points.txt writing requirements to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-oc_rk3xh/snakemake.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-oc_rk3xh/snakemake.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-oc_rk3xh/snakemake.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-oc_rk3xh/snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-oc_rk3xh/snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-oc_rk3xh/snakemake-7.32.4.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: snakemake Building wheel for snakemake (pyproject.toml): started Running command Building wheel for snakemake (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/snakemake copying snakemake/wrapper.py -> build/lib/snakemake copying snakemake/workflow.py -> build/lib/snakemake copying snakemake/utils.py -> build/lib/snakemake copying snakemake/target_jobs.py -> build/lib/snakemake copying snakemake/stats.py -> build/lib/snakemake copying snakemake/sourcecache.py -> build/lib/snakemake copying snakemake/shell.py -> build/lib/snakemake copying snakemake/script.py -> build/lib/snakemake copying snakemake/scheduler.py -> build/lib/snakemake copying snakemake/rules.py -> build/lib/snakemake copying snakemake/ruleinfo.py -> build/lib/snakemake copying snakemake/resources.py -> build/lib/snakemake copying snakemake/profiles.py -> build/lib/snakemake copying snakemake/persistence.py -> build/lib/snakemake copying snakemake/path_modifier.py -> build/lib/snakemake copying snakemake/parser.py -> build/lib/snakemake copying snakemake/output_index.py -> build/lib/snakemake copying snakemake/notebook.py -> build/lib/snakemake copying snakemake/modules.py -> build/lib/snakemake copying snakemake/logging.py -> build/lib/snakemake copying snakemake/jobs.py -> build/lib/snakemake copying snakemake/io.py -> build/lib/snakemake copying snakemake/interfaces.py -> build/lib/snakemake copying snakemake/gui.py -> build/lib/snakemake copying snakemake/exceptions.py -> build/lib/snakemake copying snakemake/decorators.py -> build/lib/snakemake copying snakemake/dag.py -> build/lib/snakemake copying snakemake/cwl.py -> build/lib/snakemake copying snakemake/checkpoints.py -> build/lib/snakemake copying snakemake/benchmark.py -> build/lib/snakemake copying snakemake/_version.py -> build/lib/snakemake copying snakemake/__main__.py -> build/lib/snakemake copying snakemake/__init__.py -> build/lib/snakemake creating build/lib/snakemake/unit_tests copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests creating build/lib/snakemake/template_rendering copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering creating build/lib/snakemake/report copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report copying snakemake/report/__init__.py -> build/lib/snakemake/report creating build/lib/snakemake/remote copying snakemake/remote/zenodo.py -> build/lib/snakemake/remote copying snakemake/remote/webdav.py -> build/lib/snakemake/remote copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote copying snakemake/remote/gfal.py -> build/lib/snakemake/remote copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote copying snakemake/remote/__init__.py -> build/lib/snakemake/remote copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote copying snakemake/remote/S3.py -> build/lib/snakemake/remote copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote copying snakemake/remote/GS.py -> build/lib/snakemake/remote copying snakemake/remote/FTP.py -> build/lib/snakemake/remote copying snakemake/remote/EGA.py -> build/lib/snakemake/remote copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote creating build/lib/snakemake/linting copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting copying snakemake/linting/rules.py -> build/lib/snakemake/linting copying snakemake/linting/links.py -> build/lib/snakemake/linting copying snakemake/linting/__init__.py -> build/lib/snakemake/linting creating build/lib/snakemake/executors copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors copying snakemake/executors/google_lifesciences.py -> build/lib/snakemake/executors copying snakemake/executors/ga4gh_tes.py -> build/lib/snakemake/executors copying snakemake/executors/flux.py -> build/lib/snakemake/executors copying snakemake/executors/common.py -> build/lib/snakemake/executors copying snakemake/executors/azure_batch.py -> build/lib/snakemake/executors copying snakemake/executors/__init__.py -> build/lib/snakemake/executors creating build/lib/snakemake/deployment copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment creating build/lib/snakemake/common copying snakemake/common/tbdstring.py -> build/lib/snakemake/common copying snakemake/common/__init__.py -> build/lib/snakemake/common creating build/lib/snakemake/caching copying snakemake/caching/remote.py -> build/lib/snakemake/caching copying snakemake/caching/local.py -> build/lib/snakemake/caching copying snakemake/caching/hash.py -> build/lib/snakemake/caching copying snakemake/caching/__init__.py -> build/lib/snakemake/caching creating build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates creating build/lib/snakemake/report/template copying snakemake/report/template/__init__.py -> build/lib/snakemake/report/template creating build/lib/snakemake/report/data copying snakemake/report/data/timeline.py -> build/lib/snakemake/report/data copying snakemake/report/data/runtimes.py -> build/lib/snakemake/report/data copying snakemake/report/data/rules.py -> build/lib/snakemake/report/data copying snakemake/report/data/rulegraph.py -> build/lib/snakemake/report/data copying snakemake/report/data/results.py -> build/lib/snakemake/report/data copying snakemake/report/data/packages.py -> build/lib/snakemake/report/data copying snakemake/report/data/common.py -> build/lib/snakemake/report/data copying snakemake/report/data/categories.py -> build/lib/snakemake/report/data copying snakemake/report/data/__init__.py -> build/lib/snakemake/report/data creating build/lib/snakemake/report/template/components copying snakemake/report/template/components/__init__.py -> build/lib/snakemake/report/template/components creating build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/slurm_submit.py -> build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/slurm_jobstep.py -> build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/__init__.py -> build/lib/snakemake/executors/slurm copying snakemake/report.css -> build/lib/snakemake copying snakemake/gui.html -> build/lib/snakemake copying snakemake/executors/jobscript.sh -> build/lib/snakemake/executors copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/report/template/style.css -> build/lib/snakemake/report/template copying snakemake/report/template/index.html.jinja2 -> build/lib/snakemake/report/template copying snakemake/report/template/logo.svg -> build/lib/snakemake/report/template copying snakemake/report/template/components/subcategory.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/stats.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/search_results.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/rule_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/rule_graph.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/result_view_button.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/result_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/report_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/navbar.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/menu.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/list_item.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/list_heading.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/icon.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/content.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/common.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/category.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/button.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/breadcrumbs.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/app.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/abstract_results.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/abstract_menu.js -> build/lib/snakemake/report/template/components UPDATING build/lib/snakemake/_version.py set build/lib/snakemake/_version.py to '7.32.4' installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686 creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/_version.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/gui.html -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/report.css -> build/bdist.linux-i686/wheel/snakemake creating build/bdist.linux-i686/wheel/snakemake/caching copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-i686/wheel/snakemake/caching copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-i686/wheel/snakemake/caching copying build/lib/snakemake/caching/local.py -> build/bdist.linux-i686/wheel/snakemake/caching copying build/lib/snakemake/caching/remote.py -> build/bdist.linux-i686/wheel/snakemake/caching creating build/bdist.linux-i686/wheel/snakemake/common copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-i686/wheel/snakemake/common copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-i686/wheel/snakemake/common creating build/bdist.linux-i686/wheel/snakemake/deployment copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-i686/wheel/snakemake/deployment copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-i686/wheel/snakemake/deployment copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-i686/wheel/snakemake/deployment copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-i686/wheel/snakemake/deployment copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-i686/wheel/snakemake/deployment creating build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-i686/wheel/snakemake/executors creating build/bdist.linux-i686/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/__init__.py -> build/bdist.linux-i686/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/slurm_jobstep.py -> build/bdist.linux-i686/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/slurm_submit.py -> build/bdist.linux-i686/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/azure_batch.py -> build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/common.py -> build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/flux.py -> build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/ga4gh_tes.py -> build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences.py -> build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-i686/wheel/snakemake/executors creating build/bdist.linux-i686/wheel/snakemake/linting copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-i686/wheel/snakemake/linting copying build/lib/snakemake/linting/links.py -> build/bdist.linux-i686/wheel/snakemake/linting copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-i686/wheel/snakemake/linting copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-i686/wheel/snakemake/linting creating build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-i686/wheel/snakemake/remote creating build/bdist.linux-i686/wheel/snakemake/report creating build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/__init__.py -> build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/categories.py -> build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/common.py -> build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/packages.py -> build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/results.py -> build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/rulegraph.py -> build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/rules.py -> build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/runtimes.py -> build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/timeline.py -> build/bdist.linux-i686/wheel/snakemake/report/data creating build/bdist.linux-i686/wheel/snakemake/report/template copying build/lib/snakemake/report/template/logo.svg -> build/bdist.linux-i686/wheel/snakemake/report/template copying build/lib/snakemake/report/template/index.html.jinja2 -> build/bdist.linux-i686/wheel/snakemake/report/template copying build/lib/snakemake/report/template/style.css -> build/bdist.linux-i686/wheel/snakemake/report/template creating build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/abstract_menu.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/abstract_results.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/app.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/breadcrumbs.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/button.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/category.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/common.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/content.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/icon.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/list_heading.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/list_item.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/menu.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/navbar.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/report_info.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/result_info.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/result_view_button.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/rule_graph.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/rule_info.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/search_results.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/stats.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/subcategory.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/__init__.py -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/__init__.py -> build/bdist.linux-i686/wheel/snakemake/report/template copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-i686/wheel/snakemake/report copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-i686/wheel/snakemake/report creating build/bdist.linux-i686/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-i686/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-i686/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-i686/wheel/snakemake/template_rendering creating build/bdist.linux-i686/wheel/snakemake/unit_tests creating build/bdist.linux-i686/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-i686/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-i686/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-i686/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-i686/wheel/snakemake/unit_tests copying build/lib/snakemake/__init__.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/__main__.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/benchmark.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/cwl.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/dag.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/decorators.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/exceptions.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/gui.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/interfaces.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/io.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/jobs.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/logging.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/modules.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/notebook.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/output_index.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/parser.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/persistence.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/profiles.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/resources.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/rules.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/scheduler.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/script.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/shell.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/stats.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/utils.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/workflow.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/wrapper.py -> build/bdist.linux-i686/wheel/snakemake running install_egg_info running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Copying snakemake.egg-info to build/bdist.linux-i686/wheel/snakemake-7.32.4-py3.12.egg-info running install_scripts creating build/bdist.linux-i686/wheel/snakemake-7.32.4.dist-info/WHEEL creating '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-wheel-6feb6opz/.tmp-0lc7_b5w/snakemake-7.32.4-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'snakemake/__init__.py' adding 'snakemake/__main__.py' adding 'snakemake/_version.py' adding 'snakemake/benchmark.py' adding 'snakemake/checkpoints.py' adding 'snakemake/cwl.py' adding 'snakemake/dag.py' adding 'snakemake/decorators.py' adding 'snakemake/exceptions.py' adding 'snakemake/gui.html' adding 'snakemake/gui.py' adding 'snakemake/interfaces.py' adding 'snakemake/io.py' adding 'snakemake/jobs.py' adding 'snakemake/logging.py' adding 'snakemake/modules.py' adding 'snakemake/notebook.py' adding 'snakemake/output_index.py' adding 'snakemake/parser.py' adding 'snakemake/path_modifier.py' adding 'snakemake/persistence.py' adding 'snakemake/profiles.py' adding 'snakemake/report.css' adding 'snakemake/resources.py' adding 'snakemake/ruleinfo.py' adding 'snakemake/rules.py' adding 'snakemake/scheduler.py' adding 'snakemake/script.py' adding 'snakemake/shell.py' adding 'snakemake/sourcecache.py' adding 'snakemake/stats.py' adding 'snakemake/target_jobs.py' adding 'snakemake/utils.py' adding 'snakemake/workflow.py' adding 'snakemake/wrapper.py' adding 'snakemake/caching/__init__.py' adding 'snakemake/caching/hash.py' adding 'snakemake/caching/local.py' adding 'snakemake/caching/remote.py' adding 'snakemake/common/__init__.py' adding 'snakemake/common/tbdstring.py' adding 'snakemake/deployment/__init__.py' adding 'snakemake/deployment/conda.py' adding 'snakemake/deployment/containerize.py' adding 'snakemake/deployment/env_modules.py' adding 'snakemake/deployment/singularity.py' adding 'snakemake/executors/__init__.py' adding 'snakemake/executors/azure_batch.py' adding 'snakemake/executors/common.py' adding 'snakemake/executors/flux.py' adding 'snakemake/executors/ga4gh_tes.py' adding 'snakemake/executors/google_lifesciences.py' adding 'snakemake/executors/google_lifesciences_helper.py' adding 'snakemake/executors/jobscript.sh' adding 'snakemake/executors/slurm/__init__.py' adding 'snakemake/executors/slurm/slurm_jobstep.py' adding 'snakemake/executors/slurm/slurm_submit.py' adding 'snakemake/linting/__init__.py' adding 'snakemake/linting/links.py' adding 'snakemake/linting/rules.py' adding 'snakemake/linting/snakefiles.py' adding 'snakemake/remote/AzBlob.py' adding 'snakemake/remote/EGA.py' adding 'snakemake/remote/FTP.py' adding 'snakemake/remote/GS.py' adding 'snakemake/remote/HTTP.py' adding 'snakemake/remote/NCBI.py' adding 'snakemake/remote/S3.py' adding 'snakemake/remote/S3Mocked.py' adding 'snakemake/remote/SFTP.py' adding 'snakemake/remote/XRootD.py' adding 'snakemake/remote/__init__.py' adding 'snakemake/remote/dropbox.py' adding 'snakemake/remote/gfal.py' adding 'snakemake/remote/gridftp.py' adding 'snakemake/remote/iRODS.py' adding 'snakemake/remote/webdav.py' adding 'snakemake/remote/zenodo.py' adding 'snakemake/report/__init__.py' adding 'snakemake/report/rulegraph_spec.py' adding 'snakemake/report/data/__init__.py' adding 'snakemake/report/data/categories.py' adding 'snakemake/report/data/common.py' adding 'snakemake/report/data/packages.py' adding 'snakemake/report/data/results.py' adding 'snakemake/report/data/rulegraph.py' adding 'snakemake/report/data/rules.py' adding 'snakemake/report/data/runtimes.py' adding 'snakemake/report/data/timeline.py' adding 'snakemake/report/template/__init__.py' adding 'snakemake/report/template/index.html.jinja2' adding 'snakemake/report/template/logo.svg' adding 'snakemake/report/template/style.css' adding 'snakemake/report/template/components/__init__.py' adding 'snakemake/report/template/components/abstract_menu.js' adding 'snakemake/report/template/components/abstract_results.js' adding 'snakemake/report/template/components/app.js' adding 'snakemake/report/template/components/breadcrumbs.js' adding 'snakemake/report/template/components/button.js' adding 'snakemake/report/template/components/category.js' adding 'snakemake/report/template/components/common.js' adding 'snakemake/report/template/components/content.js' adding 'snakemake/report/template/components/icon.js' adding 'snakemake/report/template/components/list_heading.js' adding 'snakemake/report/template/components/list_item.js' adding 'snakemake/report/template/components/menu.js' adding 'snakemake/report/template/components/navbar.js' adding 'snakemake/report/template/components/report_info.js' adding 'snakemake/report/template/components/result_info.js' adding 'snakemake/report/template/components/result_view_button.js' adding 'snakemake/report/template/components/rule_graph.js' adding 'snakemake/report/template/components/rule_info.js' adding 'snakemake/report/template/components/search_results.js' adding 'snakemake/report/template/components/stats.js' adding 'snakemake/report/template/components/subcategory.js' adding 'snakemake/template_rendering/__init__.py' adding 'snakemake/template_rendering/jinja2.py' adding 'snakemake/template_rendering/yte.py' adding 'snakemake/unit_tests/__init__.py' adding 'snakemake/unit_tests/templates/__init__.py' adding 'snakemake/unit_tests/templates/common.py.jinja2' adding 'snakemake/unit_tests/templates/ruletest.py.jinja2' adding 'snakemake-7.32.4.dist-info/AUTHORS.rst' adding 'snakemake-7.32.4.dist-info/LICENSE.md' adding 'snakemake-7.32.4.dist-info/METADATA' adding 'snakemake-7.32.4.dist-info/WHEEL' adding 'snakemake-7.32.4.dist-info/entry_points.txt' adding 'snakemake-7.32.4.dist-info/top_level.txt' adding 'snakemake-7.32.4.dist-info/RECORD' removing build/bdist.linux-i686/wheel Building wheel for snakemake (pyproject.toml): finished with status 'done' Created wheel for snakemake: filename=snakemake-7.32.4-py3-none-any.whl size=380737 sha256=41de792549ed495ffb1d247493ac027c4562811976c7e4926e356b0e9fb7164f Stored in directory: /builddir/.cache/pip/wheels/53/8b/cb/3dce719624720fd97280e70d5666cec6215f6d7c6704f015ae Successfully built snakemake + read -r fn + find docs -type f -name '*.svg' ++ dirname docs/executor_tutorial/workflow/quals.svg ++ basename docs/executor_tutorial/workflow/quals.svg .svg + rsvg-convert --format=pdf --output=docs/executor_tutorial/workflow/quals.pdf docs/executor_tutorial/workflow/quals.svg + read -r fn + find docs/executor_tutorial -type f -exec gawk '/\.svg/ { print FILENAME; nextfile }' '{}' + + xargs -r -t sed -r -i 's/(image::.*)\.svg/\1\.pdf/' sed -r -i 's/(image::.*)\.svg/\1\.pdf/' docs/executor_tutorial/google_lifesciences.rst docs/executor_tutorial/azure_batch.rst + PYTHONPATH=/builddir/build/BUILD/snakemake-7.32.4 + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C docs latexpdf 'SPHINXOPTS=-j${RPM_BUILD_NCPUS}' make: Entering directory '/builddir/build/BUILD/snakemake-7.32.4/docs' sphinx-build -b latex -d _build/doctrees -j2 . _build/latex Running Sphinx v7.2.6 making output directory... done myst v2.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=set(), disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... building [latex]: all documents updating environment: [new config] 38 added, 0 changed, 0 removed reading sources... [100%] snakefiles/remote_files .. tutorial/tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done copying TeX support files... copying TeX support files... done processing Snakemake.tex... index getting_started/installation tutorial/tutorial tutorial/setup tutorial/basics tutorial/advanced tutorial/additional_features tutorial/short executor_tutorial/tutorial executor_tutorial/azure_batch executor_tutorial/azure_aks executor_tutorial/google_lifesciences executor_tutorial/flux snakefiles/best_practices executing/cli executing/cluster executing/cloud executing/grouping executing/caching executing/interoperability executing/monitoring snakefiles/writing_snakefiles snakefiles/rules snakefiles/configuration snakefiles/modularization snakefiles/remote_files snakefiles/utils snakefiles/deployment snakefiles/reporting snakefiles/testing snakefiles/foreign_wms project_info/citations project_info/more_resources project_info/faq project_info/contributing project_info/authors project_info/history project_info/license resolving references... done writing... done copying images... [100%] project_info/img/idea.png build succeeded, 497 warnings. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). Running LaTeX files through pdflatex... /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst:174: CRITICAL: Title level inconsistent: Use templating in profiles ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst:111: WARNING: duplicate label profiles, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst:72: WARNING: duplicate label kubernetes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst:233: WARNING: duplicate label machine types, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst:406: WARNING: duplicate label execution, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst:490: WARNING: duplicate label execution, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cluster.rst:13: WARNING: Title overline too short. -------------- Executing on SLURM clusters -------------- /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cluster.rst:5: WARNING: duplicate label cluster, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/monitoring.rst:5: WARNING: duplicate label monitoring, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/monitoring.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_aks.rst:184: ERROR: Unexpected indentation. /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:47: WARNING: Title underline too short. Create an Azure Storage Account and upload example data ::::::::::::::::::::::::::::::::::::::::::::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:47: WARNING: Title underline too short. Create an Azure Storage Account and upload example data ::::::::::::::::::::::::::::::::::::::::::::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:119: WARNING: Title underline too short. Azure Blob Storage Warning: ::::::::::::::::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:119: WARNING: Title underline too short. Azure Blob Storage Warning: ::::::::::::::::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:367: WARNING: Title underline too short. Defining a Start Task ::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:367: WARNING: Title underline too short. Defining a Start Task ::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:386: WARNING: Title underline too short. Autoscaling and Task Distribution ::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:386: WARNING: Title underline too short. Autoscaling and Task Distribution ::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:28: WARNING: duplicate label setup, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_aks.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:163: WARNING: duplicate label running the workflow, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_aks.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/flux.rst:13: WARNING: duplicate label setup, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/google_lifesciences.rst:13: WARNING: duplicate label setup, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/flux.rst /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:688: WARNING: Title underline too short. How can I avoid system /tmp to be used when combining singularity and conda? ------------------------------------------------------ /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:688: WARNING: Title underline too short. 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/builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:1362: WARNING: undefined label: 'snakefiles_ensure' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:1951: WARNING: undefined label: 'job-grouping' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:1951: WARNING: undefined label: 'job-grouping' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/configuration.rst:35: WARNING: undefined label: 'api_reference_snakemake' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/utils.rst:7: WARNING: undefined label: 'utils-api' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/foreign_wms.rst:30: WARNING: undefined label: 'snakefiles-local-rule' WARNING: Could not fetch remote image: https://img.shields.io/badge/Gitpod-ready--to--code-blue?logo=gitpod [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /badge/Gitpod-ready--to--code-blue?logo=gitpod (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/conda/dn/bioconda/snakemake.svg?label=Bioconda [HTTPSConnectionPool(host='img.shields.io', port=443)make: Leaving directory '/builddir/build/BUILD/snakemake-7.32.4/docs' /usr/bin/make -C _build/latex all-pdf : Max retries exceeded with url: /conda/dn/bioconda/snakemake.svg?label=Bioconda (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/pypi/pyversions/snakemake.svg [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /pypi/pyversions/snakemake.svg (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/pypi/v/snakemake.svg [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /pypi/v/snakemake.svg (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/github/workflow/status/snakemake/snakemake/Publish%20to%20Docker%20Hub?color=blue&label=docker%20container&branch=main [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /github/workflow/status/snakemake/snakemake/Publish%20to%20Docker%20Hub?color=blue&label=docker%20container&branch=main (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://github.com/snakemake/snakemake/workflows/CI/badge.svg?branch=main&label=tests [HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /snakemake/snakemake/workflows/CI/badge.svg?branch=main&label=tests (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/badge/stack-overflow-orange.svg [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /badge/stack-overflow-orange.svg (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/twitter/follow/johanneskoester.svg?style=social&label=Follow [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /twitter/follow/johanneskoester.svg?style=social&label=Follow (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/discord/753690260830945390?label=discord%20chat [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /discord/753690260830945390?label=discord%20chat (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/github/stars/snakemake/snakemake?style=social [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /github/stars/snakemake/snakemake?style=social (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/badge/snakemake-≥5.6.0-brightgreen.svg?style=flat [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /badge/snakemake-%E2%89%A55.6.0-brightgreen.svg?style=flat (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:266: WARNING: Lexing literal_block '# required env variables\nexport AZ_BLOB_PREFIX=snakemake-tutorial\nexport AZ_BATCH_ACCOUNT_URL="${batch_account_url}"\nexport AZ_BATCH_ACCOUNT_KEY="${az_batch_account_key}"\nexport AZ_BLOB_ACCOUNT_URL="${storage_account_url_with_sas}"\n\n# optional environment variables with defaults listed\n\n# network and identity\n# export BATCH_POOL_SUBNET_ID=\n# export BATCH_MANAGED_IDENTITY_RESOURCE_ID=\n# export BATCH_MANAGED_IDENTITY_CLIENT_ID=\n\n# if unset, default is "classic"\n# export BATCH_NODE_COMMUNICATION_SIMPLIFIED=true\n\n# don\'t recommend changing\n# export BATCH_POOL_IMAGE_PUBLISHER=microsoft-azure-batch\n# export BATCH_POOL_IMAGE_OFFER=ubuntu-server-container\n# export BATCH_POOL_IMAGE_SKU=20-04-lts\n# export BATCH_POOL_RESOURCE_FILE_PREFIX=resource-files\n\n# export BATCH_POOL_VM_CONTAINER_IMAGE=ubuntu\n# export BATCH_POOL_VM_NODE_AGENT_SKU_ID="batch.node.ubuntu 20.04"\n\n# can be used to add a startup task to the batch nodes formatted as an sas url to a bash script\n# export BATCH_NODE_START_TASK_SAS_URL=\n\n# can be useful to alter task distribution across nodes\n\n# export BATCH_POOL_VM_SIZE=Standard_D2_v3\n# export BATCH_NODE_FILL_TYPE=spread\n# export BATCH_POOL_NODE_COUNT=1\n# export BATCH_TASKS_PER_NODE=1\n\n# container registry configuration to pull container image from custom registry\n# export BATCH_CONTAINER_REGISTRY_URL=\n# export BATCH_CONTAINER_REGISTRY_USER=\n# export BATCH_CONTAINER_REGISTRY_PASS=\n\nsnakemake \\\n --jobs 3 \\\n -rpf --verbose --default-remote-prefix $AZ_BLOB_PREFIX \\\n --use-conda \\\n --default-remote-provider AzBlob \\\n --envvars AZ_BLOB_ACCOUNT_URL \\\n --az-batch \\\n --container-image snakemake/snakemake \\\n --az-batch-account-url $AZ_BATCH_ACCOUNT_URL' as "console" resulted in an error at token: "'". 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[44] [45] [46] Overfull \hbox (16.155pt too wide) in paragraph at lines 2923--2925 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_IMAGE_PUBLISHER| Overfull \hbox (40.465pt too wide) in paragraph at lines 2953--2955 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_VM_CONTAINER_IMAGE| Overfull \hbox (52.17499pt too wide) in paragraph at lines 2963--2965 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_VM_NODE_AGENT_SKU_ID| Overfull \hbox (42.36499pt too wide) in paragraph at lines 3003--3005 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_RESOURCE_FILE_PREFIX| Overfull \hbox (34.435pt too wide) in paragraph at lines 3013--3015 []|\TU/FreeSerif(0)/m/n/10 BATCH_NODE_START_TASK_SAS_URL| Overfull \hbox (72.44499pt too wide) in paragraph at lines 3033--3035 []|\TU/FreeSerif(0)/m/n/10 BATCH_NODE_COMMUNICATION_SIMPLIFIED| Overfull \hbox (67.97499pt too wide) in paragraph at lines 3053--3055 []|\TU/FreeSerif(0)/m/n/10 BATCH_MANAGED_IDENTITY_RESOURCE_ID| Overfull \hbox (51.485pt too wide) in paragraph at lines 3063--3065 []|\TU/FreeSerif(0)/m/n/10 BATCH_MANAGED_IDENTITY_CLIENT_ID| Overfull \hbox (28.965pt too wide) in paragraph at lines 3073--3075 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_URL| Overfull \hbox (34.045pt too wide) in paragraph at lines 3083--3085 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_USER| Overfull \hbox (31.625pt too wide) in paragraph at lines 3093--3095 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_PASS| [47] Overfull \vbox (0.72789pt too high) detected at line 3160 [48] Overfull \vbox (1.98596pt too high) detected at line 3201 [49] Underfull \vbox (badness 10000) detected at line 3201 Overfull \vbox (1.98598pt too high) detected at line 3201 [50] Underfull \hbox (badness 10000) in paragraph at lines 3235--3239 \TU/FreeSerif(0)/m/n/10 The azure batch executor supports autoscaling of the ba tch nodes by including the flag [51] LaTeX Warning: Hyper reference `tutorial/setup:tutorial-setup' on page 52 undef ined on input line 3296. [52] Underfull \hbox (badness 10000) in paragraph at lines 3376--3388 []\TU/FreeSerif(0)/m/n/10 There is a lot going on here, so let’s unpack it: thi s creates an [][]auto-scaling Kubernetes cluster[][] [53] [54] [55] [56] LaTeX Warning: Hyper reference `tutorial/basics:tutorial-basics' on page 57 und efined on input line 3727. 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[136] Underfull \hbox (badness 5652) in paragraph at lines 8976--8980 \TU/FreeSerif(0)/m/n/10 Snakemake tracks the code that was used to create your files. In combination with [][]\TU/FreeMono(0)/m/n/10 summary \TU/FreeSerif(0)/ m/n/10 or [137] LaTeX Warning: Hyper reference `snakefiles/rules:snakefiles-targets' on page 13 8 undefined on input line 9077. [138] [139] LaTeX Warning: Hyper reference `snakefiles/rules:snakefiles-aggregation' on pag e 140 undefined on input line 9195. [140] [141] LaTeX Warning: Hyper reference `executing/grouping:job-grouping' on page 142 un defined on input line 9323. LaTeX Warning: Hyper reference `executing/grouping:job-grouping' on page 142 un defined on input line 9332. LaTeX Warning: Hyper reference `snakefiles/rules:snakefiles-input-functions' on page 142 undefined on input line 9333. [142] LaTeX Warning: Hyper reference `executing/grouping:job-grouping' on page 143 un defined on input line 9370. 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[165] [166] [167] [168] [169] [170] [171] [172] Underfull \hbox (badness 10000) in paragraph at lines 11299--11301 []\TU/FreeSerif(0)/m/n/10 When used in conjunction with \TU/FreeMono(0)/m/n/10 NCBI.RemoteProvider().search()\TU/FreeSerif(0)/m/n/10 , Snakemake and \TU/FreeM ono(0)/m/n/10 NCBI. Overfull \vbox (1.03299pt too high) detected at line 11355 [173] [174] Underfull \hbox (badness 5133) in paragraph at lines 11479--11486 []\TU/FreeSerif(0)/m/n/10 The default location for the configuration file is \T U/FreeMono(0)/m/n/10 ~/.irods/irods_environment.json\TU/FreeSerif(0)/m/n/10 . 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[240] [241] [242] [243] [244] Underfull \hbox (badness 10000) in paragraph at lines 16974--16976 []\TU/FreeSerif(0)/m/n/10 provide temporary IPYTHONDIR for notebook execution i n order to avoid race conditions in [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255] [256] [257] [258] [259] [260] [261] [262] [263] [264] [265] [266] [267] [268] Underfull \hbox (badness 10000) in paragraph at lines 19438--19441 []\TU/FreeSerif(0)/m/n/10 Allow URL to local git repo with wrapper directive (\ TU/FreeMono(0)/m/n/10 git+file:///path/to/your/repo/ [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] Underfull \hbox (badness 10000) in paragraph at lines 20504--20510 []\TU/FreeSerif(0)/m/n/10 When submitting cluster jobs (either through [][]\TU/ FreeMono(0)/m/n/10 cluster \TU/FreeSerif(0)/m/n/10 or [][]\TU/FreeMono(0)/m/n/1 0 drmaa\TU/FreeSerif(0)/m/n/10 ), you can now use [279] [280] [281] No file Snakemake.ind. Package sphinx Warning: The package pict2e is required for rounded boxes. (sphinx) As it does not seem to be available on your system, (sphinx) options setting radii have all been ignored. Package sphinx Warning: The package ellipse is required for elliptical corners. (sphinx) As it does not seem to be available on your system, (sphinx) all non-straight corners have used circle arcs.. [282] (./Snakemake.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `Snakemake.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) Output written on Snakemake.pdf (286 pages). Transcript written on Snakemake.log. Latexmk: Getting log file 'Snakemake.log' Latexmk: Examining 'Snakemake.fls' Latexmk: Examining 'Snakemake.log' Latexmk: Index file 'Snakemake.idx' was written Latexmk: References changed. Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'Snakemake.pdf' Latexmk: applying rule 'makeindex Snakemake.idx'... Rule 'makeindex Snakemake.idx': Reasons for rerun Category 'other': Rerun of 'makeindex Snakemake.idx' forced or previously required ------------ Run number 1 of rule 'makeindex Snakemake.idx' ------------ ------------ Running 'internal xindy -L english -C utf8 -M sphinx.xdy -o "Snakemake.ind" "Snakemake.idx"' ------------ Latexmk: calling xindy( -L english -C utf8 -M sphinx.xdy -o "Snakemake.ind" "Snakemake.idx" ) Latexmk: applying rule 'pdflatex'... Rule 'pdflatex': Reasons for rerun Changed files or newly in use/created: Snakemake.aux Snakemake.ind Snakemake.out Snakemake.toc ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'xelatex -recorder "Snakemake.tex"' ------------ This is XeTeX, Version 3.141592653-2.6-0.999995 (TeX Live 2023) (preloaded format=xelatex) restricted \write18 enabled. entering extended mode (./Snakemake.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-02-22> (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty Package cmap Warning: pdftex not detected - exiting. ) (/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.sty (/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-xetex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec-xetex.sty (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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(sphinx) All non-straight corners will use circle arcs.. ) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty) (/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty)) (./sphinxlatexnumfig.sty) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty ) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip-2001-04-09.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hxetex.def (/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file Snakemake.idx (./Snakemake.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) *geometry* driver: auto-detecting *geometry* detected driver: xetex (./Snakemake.out) (./Snakemake.out) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1] [2] (./Snakemake.toc) [1] [2] [1] [2] Chapter 1. [3] [4] Chapter 2. [5] [6] Chapter 3. [7] [8] Chapter 4. [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Overfull \vbox (1.78299pt too high) detected at line 2638 [43] [44] [45] [46] Overfull \hbox (16.155pt too wide) in paragraph at lines 2923--2925 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_IMAGE_PUBLISHER| Overfull \hbox (40.465pt too wide) in paragraph at lines 2953--2955 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_VM_CONTAINER_IMAGE| Overfull \hbox (52.17499pt too wide) in paragraph at lines 2963--2965 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_VM_NODE_AGENT_SKU_ID| Overfull \hbox (42.36499pt too wide) in paragraph at lines 3003--3005 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_RESOURCE_FILE_PREFIX| Overfull \hbox (34.435pt too wide) in paragraph at lines 3013--3015 []|\TU/FreeSerif(0)/m/n/10 BATCH_NODE_START_TASK_SAS_URL| Overfull \hbox (72.44499pt too wide) in paragraph at lines 3033--3035 []|\TU/FreeSerif(0)/m/n/10 BATCH_NODE_COMMUNICATION_SIMPLIFIED| Overfull \hbox (67.97499pt too wide) in paragraph at lines 3053--3055 []|\TU/FreeSerif(0)/m/n/10 BATCH_MANAGED_IDENTITY_RESOURCE_ID| Overfull \hbox (51.485pt too wide) in paragraph at lines 3063--3065 []|\TU/FreeSerif(0)/m/n/10 BATCH_MANAGED_IDENTITY_CLIENT_ID| Overfull \hbox (28.965pt too wide) in paragraph at lines 3073--3075 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_URL| Overfull \hbox (34.045pt too wide) in paragraph at lines 3083--3085 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_USER| Overfull \hbox (31.625pt too wide) in paragraph at lines 3093--3095 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_PASS| [47] Overfull \vbox (0.72789pt too high) detected at line 3160 [48] Overfull \vbox (1.98596pt too high) detected at line 3201 [49] Underfull \vbox (badness 10000) detected at line 3201 Overfull \vbox (1.98598pt too high) detected at line 3201 [50] Underfull \hbox (badness 10000) in paragraph at lines 3235--3239 \TU/FreeSerif(0)/m/n/10 The azure batch executor supports autoscaling of the ba tch nodes by including the flag [51] [52] Underfull \hbox (badness 10000) in paragraph at lines 3376--3388 []\TU/FreeSerif(0)/m/n/10 There is a lot going on here, so let’s unpack it: thi s creates an [][]auto-scaling Kubernetes cluster[][] [53] [54] [55] [56] [57] Overfull \vbox (1.98596pt too high) detected at line 3840 [58] [59] [60] Underfull \vbox (badness 10000) detected at line 4080 Overfull \vbox (1.98598pt too high) detected at line 4080 [61] Underfull \vbox (badness 10000) detected at line 4080 Overfull \vbox (1.98598pt too high) detected at line 4080 [62] [63] [64] [65] [66] Underfull \vbox (badness 10000) detected at line 4358 Underfull \vbox (badness 10000) detected at line 4358 [67] Underfull \vbox (badness 10000) detected at line 4358 Overfull \vbox (1.98598pt too high) detected at line 4358 [68] Underfull \vbox (badness 1565) detected at line 4404 [69] [70] Overfull \vbox (2.98596pt too high) detected at line 4504 [71] [72] [73] Underfull \vbox (badness 2126) detected at line 4740 [74] [75] [76] [77] [78] Overfull \vbox (2.033pt too high) detected at line 5158 [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] Overfull \hbox (11.06543pt too wide) in paragraph at lines 5685--5687 []\TU/FreeSerif(0)/m/n/10 Target particular jobs by RULE:WILDCARD1=VALUE,WILDCA RD2=VALUE,… [89] [90] [91] [92] [93] Underfull \hbox (badness 10000) in paragraph at lines 5946--5948 []\TU/FreeSerif(0)/m/n/10 Additional tibanna config e.g. –tibanna-config spot_i nstance=true sub- [94] [95] [96] Underfull \hbox (badness 10000) in paragraph at lines 6273--6273 []\TU/FreeSans(0)/m/n/10 Snakemake re- Overfull \hbox (0.88507pt too wide) in paragraph at lines 6273--6273 []\TU/FreeMono(0)/m/n/10 slurm_partition| Overfull \hbox (3.79732pt too wide) in paragraph at lines 6273--6273 [][]\TU/FreeMono(0)/m/n/10 c\TU/FreeSerif(0)/m/n/10 /[][]\TU/FreeMono(0)/m/n/10 cpus[]per[]task| [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] Underfull \hbox (badness 10000) in paragraph at lines 7013--7017 []\TU/FreeSerif(0)/m/n/10 The azure batch executor supports autoscaling of the batch nodes by including the flag [108] [109] Underfull \hbox (badness 10000) in paragraph at lines 7213--7216 []|\TU/FreeSerif(0)/m/n/10 Snakemake gets the status of panoptes. 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In combination with [][]\TU/FreeMono(0)/m/n/10 summary \TU/FreeSerif(0)/ m/n/10 or [137] [138] [139] [140] [141] [142] [143] [144] Overfull \vbox (2.64099pt too high) detected at line 9545 [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] Overfull \vbox (0.688pt too high) detected at line 10609 [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] Underfull \hbox (badness 10000) in paragraph at lines 11299--11301 []\TU/FreeSerif(0)/m/n/10 When used in conjunction with \TU/FreeMono(0)/m/n/10 NCBI.RemoteProvider().search()\TU/FreeSerif(0)/m/n/10 , Snakemake and \TU/FreeM ono(0)/m/n/10 NCBI. Overfull \vbox (1.03299pt too high) detected at line 11355 [173] [174] Underfull \hbox (badness 5133) in paragraph at lines 11479--11486 []\TU/FreeSerif(0)/m/n/10 The default location for the configuration file is \T U/FreeMono(0)/m/n/10 ~/.irods/irods_environment.json\TU/FreeSerif(0)/m/n/10 . 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Next, we d efine the module \TU/FreeMono(0)/m/n/10 dna_seq \TU/FreeSerif(0)/m/n/10 to be l oaded from [180] Overfull \vbox (2.98596pt too high) detected at line 11881 [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] Overfull \vbox (2.0pt too high) has occurred while \output is active [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] Underfull \vbox (badness 10000) detected at line 13935 Overfull \vbox (1.98598pt too high) detected at line 13935 [211] [212] Underfull \hbox (badness 10000) in paragraph at lines 14076--14079 []\TU/FreeSerif(0)/m/n/10 Provide hyperlink targets, at least for the first two section levels. For this, use the format [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] Missing character: There is no ⚠ (U+26A0) in font [FreeSansBold.otf]/OT:script= latn;language=dflt;! [240] [241] [242] [243] [244] Underfull \hbox (badness 10000) in paragraph at lines 16974--16976 []\TU/FreeSerif(0)/m/n/10 provide temporary IPYTHONDIR for notebook execution i n order to avoid race conditions in [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255] [256] [257] [258] [259] [260] [261] [262] [263] [264] [265] [266] [267] [268] Underfull \hbox (badness 10000) in paragraph at lines 19438--19441 []\TU/FreeSerif(0)/m/n/10 Allow URL to local git repo with wrapper directive (\ TU/FreeMono(0)/m/n/10 git+file:///path/to/your/repo/ [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] Underfull \hbox (badness 10000) in paragraph at lines 20504--20510 []\TU/FreeSerif(0)/m/n/10 When submitting cluster jobs (either through [][]\TU/ FreeMono(0)/m/n/10 cluster \TU/FreeSerif(0)/m/n/10 or [][]\TU/FreeMono(0)/m/n/1 0 drmaa\TU/FreeSerif(0)/m/n/10 ), you can now use [279] [280] [281] (./Snakemake.ind) Package sphinx Warning: The package pict2e is required for rounded boxes. (sphinx) As it does not seem to be available on your system, (sphinx) options setting radii have all been ignored. Package sphinx Warning: The package ellipse is required for elliptical corners. (sphinx) As it does not seem to be available on your system, (sphinx) all non-straight corners have used circle arcs.. [282] (./Snakemake.aux) ) (see the transcript file for additional information) Output written on Snakemake.pdf (286 pages). Transcript written on Snakemake.log. Latexmk: Getting log file 'Snakemake.log' Latexmk: Examining 'Snakemake.fls' Latexmk: Examining 'Snakemake.log' Latexmk: Index file 'Snakemake.idx' was written Latexmk: Log file says output to 'Snakemake.pdf' Latexmk: Summary of warnings from last run of *latex: =====Latex reported missing or unavailable character(s). =====See log file for details. Latexmk: All targets () are up-to-date make[1]: Leaving directory '/builddir/build/BUILD/snakemake-7.32.4/docs/_build/latex' Latexmk: Missing input file 'Snakemake.toc' (or dependence on it) from following: No file Snakemake.toc. Latexmk: Missing input file 'Snakemake.ind' (or dependence on it) from following: No file Snakemake.ind. Latexmk: ====Undefined refs and citations with line #s in .tex file: Missing character: There is no ⚠ (U+26A0) in font [FreeSansBold.otf]/OT:script= Missing character: There is no ⚠ (U+26A0) in font [FreeSansBold.otf]/OT:script=latn;language=dflt;! + RPM_EC=0 ++ jobs -p + exit 0 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 ++ dirname /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-7.32.4 ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ ls /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir/snakemake-7.32.4-py3-none-any.whl + specifier=snakemake==7.32.4 + '[' -z snakemake==7.32.4 ']' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir snakemake==7.32.4 make: Entering directory '/builddir/build/BUILD/snakemake-7.32.4/docs' pdflatex finished; the PDF files are in _build/latex. make: Leaving directory '/builddir/build/BUILD/snakemake-7.32.4/docs' Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.k7WRBn Using pip 23.3.1 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir Processing ./pyproject-wheeldir/snakemake-7.32.4-py3-none-any.whl Installing collected packages: snakemake Creating /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin changing mode of /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin/snakemake to 755 changing mode of /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin/snakemake-bash-completion to 755 Successfully installed snakemake-7.32.4 + '[' -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin/snakemake /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin/snakemake-bash-completion /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin/snakemake: updating /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin/snakemake-bash-completion: updating + rm -rfv /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages ']' + site_dirs+=("/usr/lib/python3.12/site-packages") + '[' /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages '!=' /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 --record /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/RECORD --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-record + rm -fv /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/RECORD removed '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=2 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-files --output-modules /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-modules --buildroot /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-record --prefix /usr -l snakemake + install -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/man/man1 + PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages + help2man --no-info '--name=Metapackage for snakemake: azure extras' snakemake + install -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/bash-completion/completions + touch Snakefile + PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages + snakemake --bash-completion + install -t /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/nano -D -m 0644 -p misc/nano/syntax/snakemake.nanorc + install -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles + cp -vrp misc/vim/README.md misc/vim/ftdetect misc/vim/ftplugin misc/vim/syntax /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles 'misc/vim/README.md' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/README.md' 'misc/vim/ftdetect' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/ftdetect' 'misc/vim/ftdetect/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/ftdetect/snakemake.vim' 'misc/vim/ftplugin' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/ftplugin' 'misc/vim/ftplugin/snakemake' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/ftplugin/snakemake' 'misc/vim/ftplugin/snakemake/folding.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/ftplugin/snakemake/folding.vim' 'misc/vim/ftplugin/snakemake/sections.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/ftplugin/snakemake/sections.vim' 'misc/vim/syntax' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/syntax' 'misc/vim/syntax/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/syntax/snakemake.vim' + find /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles -type f -name 'README.*' -print -delete /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/README.md + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 7.32.4-3.fc40 --unique-debug-suffix -7.32.4-3.fc40.i386 --unique-debug-src-base snakemake-7.32.4-3.fc40.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/snakemake-7.32.4 find-debuginfo: starting Extracting debug info from 0 files Creating .debug symlinks for symlinks to ELF files find: ‘debug’: No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.IZcYNz + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-7.32.4 + k='not test_lint[long_run-positive]' + k='not test_lint[long_run-positive] and not test_tibanna' + k='not test_lint[long_run-positive] and not test_tibanna and not test_tes' + k='not test_lint[long_run-positive] and not test_tibanna and not test_tes and not test_slurm_' + ignore=' --ignore=tests/test_google_lifesciences.py' + ignore=' --ignore=tests/test_google_lifesciences.py --ignore-glob=tests/test_conda_python_3_7_script/*' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages:/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest -v -k 'not test_lint[long_run-positive] and not test_tibanna and not test_tes and not test_slurm_' --ignore=tests/test_google_lifesciences.py '--ignore-glob=tests/test_conda_python_3_7_script/*' ============================= test session starts ============================== platform linux -- Python 3.12.1, pytest-7.4.3, pluggy-1.3.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/snakemake-7.32.4 plugins: requests-mock-1.10.0 collecting ... collected 66 items / 8 deselected / 58 selected tests/test_azure_batch_executor.py::test_az_batch_executor SKIPPED (...) [ 1%] tests/test_expand.py::test_simple_expand PASSED [ 3%] tests/test_expand.py::test_allow_missing PASSED [ 5%] tests/test_io.py::test_wildcard_regex PASSED [ 6%] tests/test_io.py::test_expand PASSED [ 8%] tests/test_kubernetes.py::test_kubernetes_plain SKIPPED (Skipping GC...) [ 10%] tests/test_kubernetes.py::test_kubernetes_conda SKIPPED (Skipping GC...) [ 12%] tests/test_kubernetes.py::test_kubernetes_singularity SKIPPED (Skipp...) [ 13%] tests/test_kubernetes.py::test_kubernetes_conda_singularity SKIPPED [ 15%] tests/test_kubernetes.py::test_issue1041 SKIPPED (Skipping GCLOUD te...) [ 17%] tests/test_linting.py::test_lint[version-positive] PASSED [ 18%] tests/test_linting.py::test_lint[version-negative] PASSED [ 20%] tests/test_linting.py::test_lint[tab_usage-positive] PASSED [ 22%] tests/test_linting.py::test_lint[tab_usage-negative] PASSED [ 24%] tests/test_linting.py::test_lint[singularity-positive] PASSED [ 25%] tests/test_linting.py::test_lint[singularity-negative] PASSED [ 27%] tests/test_linting.py::test_lint[path_add-positive] PASSED [ 29%] tests/test_linting.py::test_lint[path_add-negative] PASSED [ 31%] tests/test_linting.py::test_lint[params_prefix-positive] PASSED [ 32%] tests/test_linting.py::test_lint[params_prefix-negative] PASSED [ 34%] tests/test_linting.py::test_lint[not_used_params-positive] PASSED [ 36%] tests/test_linting.py::test_lint[not_used_params-negative] PASSED [ 37%] tests/test_linting.py::test_lint[mixed_func_and_rules-positive] PASSED [ 39%] tests/test_linting.py::test_lint[mixed_func_and_rules-negative] PASSED [ 41%] tests/test_linting.py::test_lint[missing_software_definition-positive] PASSED [ 43%] tests/test_linting.py::test_lint[missing_software_definition-negative] PASSED [ 44%] tests/test_linting.py::test_lint[long_run-negative] PASSED [ 46%] tests/test_linting.py::test_lint[log_directive-positive] PASSED [ 48%] tests/test_linting.py::test_lint[log_directive-negative] PASSED [ 50%] tests/test_linting.py::test_lint[iofile_by_index-positive] PASSED [ 51%] tests/test_linting.py::test_lint[iofile_by_index-negative] PASSED [ 53%] tests/test_linting.py::test_lint[envvars-positive] PASSED [ 55%] tests/test_linting.py::test_lint[envvars-negative] PASSED [ 56%] tests/test_linting.py::test_lint[dynamic-positive] PASSED [ 58%] tests/test_linting.py::test_lint[dynamic-negative] PASSED [ 60%] tests/test_linting.py::test_lint[absolute_paths-positive] PASSED [ 62%] tests/test_linting.py::test_lint[absolute_paths-negative] PASSED [ 63%] tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 65%] tests/test_schema.py::test_config PASSED [ 67%] tests/test_schema.py::test_config_ref PASSED [ 68%] tests/test_schema.py::test_dataframe PASSED [ 70%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_shebang_and_second_manifest PASSED [ 72%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_with_shebang PASSED [ 74%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_without_shebang PASSED [ 75%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_empty_line_without_shebang PASSED [ 77%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_is_case_insensitive PASSED [ 79%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spacing_has_no_impact PASSED [ 81%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_formatting_not_touched_even_if_wrong PASSED [ 82%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spelt_wrong PASSED [ 84%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_shebang PASSED [ 86%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_without_shebang PASSED [ 87%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_spacing_around_language PASSED [ 89%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_has_non_cargo_block PASSED [ 91%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_missing_closing_fence PASSED [ 93%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_not_in_first_comment_block PASSED [ 94%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_outer_line_doc_comment PASSED [ 96%] tests/test_script.py::TestBashEncoder::test_named_list_one_named_one_str PASSED [ 98%] tests/test_script.py::TestBashEncoder::test_named_list_named_is_list PASSED [100%] =============================== warnings summary =============================== tests/test_schema.py: 12 warnings /builddir/build/BUILD/snakemake-7.32.4/snakemake/utils.py:50: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. from jsonschema import validators, RefResolver tests/test_schema.py::test_config :488: DeprecationWarning: Type google.protobuf.pyext._message.ScalarMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/test_schema.py::test_config :488: DeprecationWarning: Type google.protobuf.pyext._message.MessageMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/test_schema.py::test_config /usr/lib/python3.12/site-packages/google/protobuf/internal/well_known_types.py:92: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). _EPOCH_DATETIME = datetime.utcfromtimestamp(0) tests/test_schema.py::test_dataframe /usr/lib/python3.12/site-packages/pandas/core/algorithms.py:522: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) common = np.find_common_type([values.dtype, comps_array.dtype], []) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ========== 52 passed, 6 skipped, 8 deselected, 16 warnings in 17.21s =========== + RPM_EC=0 ++ jobs -p + exit 0 Processing files: snakemake-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake) = 7.32.4 python3dist(snakemake) = 7.32.4 snakemake = 7.32.4-3.fc40 vim-snakemake = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (python3.12dist(jinja2) < 4~~ with python3.12dist(jinja2) >= 3) (python3.12dist(yte) < 2~~ with python3.12dist(yte) >= 1.5.1) /usr/bin/python3 python(abi) = 3.12 python3.12dist(appdirs) python3.12dist(configargparse) python3.12dist(connection-pool) >= 0.0.3 python3.12dist(datrie) python3.12dist(docutils) python3.12dist(gitpython) python3.12dist(humanfriendly) python3.12dist(jsonschema) python3.12dist(nbformat) python3.12dist(packaging) python3.12dist(psutil) python3.12dist(pulp) >= 2 python3.12dist(pyyaml) python3.12dist(requests) python3.12dist(reretry) python3.12dist(smart-open) >= 3 python3.12dist(stopit) python3.12dist(tabulate) python3.12dist(throttler) python3.12dist(toposort) >= 1.10 python3.12dist(wrapt) Processing files: snakemake-doc-7.32.4-3.fc40.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.7X5KRe + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + DOCDIR=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/doc/snakemake-doc + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/CODE_OF_CONDUCT.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/README.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/README-nano.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/README-vim.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/docs/_build/latex/Snakemake.pdf /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/doc/snakemake-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.k6Gkol + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + LICENSEDIR=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/licenses/snakemake-doc + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/licenses/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/LICENSE.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/licenses/snakemake-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: snakemake-doc = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: snakemake+reports-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake[reports]) = 7.32.4 python3dist(snakemake[reports]) = 7.32.4 snakemake+reports = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(pygments) Processing files: snakemake+messaging-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake[messaging]) = 7.32.4 python3dist(snakemake[messaging]) = 7.32.4 snakemake+messaging = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(slacker) Processing files: snakemake+google-cloud-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake[google-cloud]) = 7.32.4 python3dist(snakemake[google-cloud]) = 7.32.4 snakemake+google-cloud = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(google-api-python-client) python3.12dist(google-cloud-storage) python3.12dist(google-crc32c) python3.12dist(oauth2client) Processing files: snakemake+azure-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake[azure]) = 7.32.4 python3dist(snakemake[azure]) = 7.32.4 snakemake+azure = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(azure-batch) python3.12dist(azure-core) python3.12dist(azure-identity) python3.12dist(azure-mgmt-batch) python3.12dist(azure-storage-blob) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.src.rpm Wrote: /builddir/build/RPMS/snakemake-doc-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+google-cloud-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+messaging-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+reports-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+azure-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake-7.32.4-3.fc40.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.KionMs + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + /usr/bin/rm -rf /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.9arJbd + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS + rm -rf snakemake-7.32.4 snakemake-7.32.4.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild snakemake-7.32.4-3.fc40.src.rpm Finish: build phase for snakemake-7.32.4-3.fc40.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1704460365.205171/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/snakemake-7.32.4-3.fc40.src.rpm) Config(child) 1 minutes 54 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "snakemake-doc", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "src" }, { "name": "snakemake+messaging", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake+azure", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake+reports", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake+google-cloud", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" } ] } RPMResults finished