Warning: Permanently added '44.201.101.20' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6866242-fedora-39-aarch64 --chroot fedora-39-aarch64 Version: 0.70 PID: 6032 Logging PID: 6033 Task: {'appstream': False, 'background': True, 'build_id': 6866242, 'buildroot_pkgs': [], 'chroot': 'fedora-39-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '10a9fbd1292724b11bb62d8f83b130912f28ed63', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.8.3/snakemake', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'snakemake', 'package_version': '7.32.4-3', 'project_dirname': 'scipy-1.8.3', 'project_name': 'scipy-1.8.3', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/scipy-1.8.3/fedora-39-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/scipy-1.8.3--https://src.fedoraproject.org/user/music', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/music', 'tags': [], 'task_id': '6866242-fedora-39-aarch64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.8.3/snakemake /var/lib/copr-rpmbuild/workspace/workdir-_w6u0vo1/snakemake --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.8.3/snakemake', '/var/lib/copr-rpmbuild/workspace/workdir-_w6u0vo1/snakemake', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-_w6u0vo1/snakemake'... Running: git checkout 10a9fbd1292724b11bb62d8f83b130912f28ed63 -- cmd: ['git', 'checkout', '10a9fbd1292724b11bb62d8f83b130912f28ed63', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-_w6u0vo1/snakemake rc: 0 stdout: stderr: Note: switching to '10a9fbd1292724b11bb62d8f83b130912f28ed63'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 10a9fbd automatic import of snakemake Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-_w6u0vo1/snakemake rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading snakemake-7.32.4.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o snakemake-7.32.4.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/scipy-1.8.3/snakemake/snakemake-7.32.4.tar.gz/md5/2d7cd0faf40a8ca3c6e47f214536d1c9/snakemake-7.32.4.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 8677k 100 8677k 0 0 112M 0 --:--:-- --:--:-- --:--:-- 112M INFO: Reading stdout from command: md5sum snakemake-7.32.4.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_w6u0vo1/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_w6u0vo1/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1704460606.352452 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.4 starting (python version = 3.11.3, NVR = mock-5.4-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_w6u0vo1/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_w6u0vo1/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1704460606.352452 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-_w6u0vo1/snakemake/snakemake.spec) Config(fedora-39-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 5.4 INFO: Mock Version: 5.4 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-aarch64-bootstrap-1704460606.352452/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:39 INFO: Pulling image: registry.fedoraproject.org/fedora:39 INFO: Copy content of container registry.fedoraproject.org/fedora:39 to /var/lib/mock/fedora-39-aarch64-bootstrap-1704460606.352452/root INFO: Checking that registry.fedoraproject.org/fedora:39 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:39 with podman image mount INFO: image registry.fedoraproject.org/fedora:39 as /var/lib/containers/storage/overlay/5663d2b0f39cbf19384039014059b724d3e69c4c6585956f862c61164e77495f/merged INFO: umounting image registry.fedoraproject.org/fedora:39 (/var/lib/containers/storage/overlay/5663d2b0f39cbf19384039014059b724d3e69c4c6585956f862c61164e77495f/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 37 MB/s | 1.7 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 236 MB/s | 71 MB 00:00 fedora 55 MB/s | 86 MB 00:01 updates 29 MB/s | 25 MB 00:00 Last metadata expiration check: 0:00:01 ago on Fri Jan 5 13:17:27 2024. Package python3-dnf-4.18.1-2.fc39.noarch is already installed. Dependencies resolved. ========================================================================================================================== Package Arch Version Repository Size ========================================================================================================================== Installing: python3-dnf-plugins-core noarch 4.4.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 302 k Upgrading: dnf noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 496 k dnf-data noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k python3-dnf noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 549 k yum noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k Installing dependencies: dbus-libs aarch64 1:1.14.10-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 156 k python3-dateutil noarch 1:2.8.2-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 345 k python3-dbus aarch64 1.3.2-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146 k python3-distro noarch 1.8.0-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44 k python3-six noarch 1.16.0-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python3-systemd aarch64 235-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101 k Transaction Summary ========================================================================================================================== Install 7 Packages Upgrade 4 Packages Total download size: 2.2 M Downloading Packages: (1/11): python3-dbus-1.3.2-4.fc39.aarch64.rpm 4.1 MB/s | 146 kB 00:00 (2/11): python3-dateutil-2.8.2-11.fc40.noarch.r 9.4 MB/s | 345 kB 00:00 (3/11): dbus-libs-1.14.10-1.fc40.aarch64.rpm 4.2 MB/s | 156 kB 00:00 (4/11): python3-six-1.16.0-12.fc39.noarch.rpm 13 MB/s | 41 kB 00:00 (5/11): python3-dnf-plugins-core-4.4.4-1.fc40.n 58 MB/s | 302 kB 00:00 (6/11): python3-distro-1.8.0-6.fc39.noarch.rpm 5.1 MB/s | 44 kB 00:00 (7/11): python3-systemd-235-5.fc39.aarch64.rpm 25 MB/s | 101 kB 00:00 (8/11): dnf-data-4.18.2-1.fc40.noarch.rpm 11 MB/s | 39 kB 00:00 (9/11): dnf-4.18.2-1.fc40.noarch.rpm 57 MB/s | 496 kB 00:00 (10/11): python3-dnf-4.18.2-1.fc40.noarch.rpm 84 MB/s | 549 kB 00:00 (11/11): yum-4.18.2-1.fc40.noarch.rpm 9.4 MB/s | 37 kB 00:00 -------------------------------------------------------------------------------- Total 40 MB/s | 2.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Upgrading : dnf-data-4.18.2-1.fc40.noarch 1/15 Upgrading : python3-dnf-4.18.2-1.fc40.noarch 2/15 Upgrading : dnf-4.18.2-1.fc40.noarch 3/15 Running scriptlet: dnf-4.18.2-1.fc40.noarch 3/15 Installing : python3-systemd-235-5.fc39.aarch64 4/15 Installing : python3-six-1.16.0-12.fc39.noarch 5/15 Installing : python3-dateutil-1:2.8.2-11.fc40.noarch 6/15 Installing : python3-distro-1.8.0-6.fc39.noarch 7/15 Installing : dbus-libs-1:1.14.10-1.fc40.aarch64 8/15 Installing : python3-dbus-1.3.2-4.fc39.aarch64 9/15 Installing : python3-dnf-plugins-core-4.4.4-1.fc40.noarch 10/15 Upgrading : yum-4.18.2-1.fc40.noarch 11/15 Cleanup : yum-4.18.1-2.fc39.noarch 12/15 Running scriptlet: dnf-4.18.1-2.fc39.noarch 13/15 Cleanup : dnf-4.18.1-2.fc39.noarch 13/15 Running scriptlet: dnf-4.18.1-2.fc39.noarch 13/15 Cleanup : python3-dnf-4.18.1-2.fc39.noarch 14/15 Cleanup : dnf-data-4.18.1-2.fc39.noarch 15/15 Running scriptlet: dnf-data-4.18.1-2.fc39.noarch 15/15 Verifying : dbus-libs-1:1.14.10-1.fc40.aarch64 1/15 Verifying : python3-dateutil-1:2.8.2-11.fc40.noarch 2/15 Verifying : python3-dbus-1.3.2-4.fc39.aarch64 3/15 Verifying : python3-distro-1.8.0-6.fc39.noarch 4/15 Verifying : python3-dnf-plugins-core-4.4.4-1.fc40.noarch 5/15 Verifying : python3-six-1.16.0-12.fc39.noarch 6/15 Verifying : python3-systemd-235-5.fc39.aarch64 7/15 Verifying : dnf-4.18.2-1.fc40.noarch 8/15 Verifying : dnf-4.18.1-2.fc39.noarch 9/15 Verifying : dnf-data-4.18.2-1.fc40.noarch 10/15 Verifying : dnf-data-4.18.1-2.fc39.noarch 11/15 Verifying : python3-dnf-4.18.2-1.fc40.noarch 12/15 Verifying : python3-dnf-4.18.1-2.fc39.noarch 13/15 Verifying : yum-4.18.2-1.fc40.noarch 14/15 Verifying : yum-4.18.1-2.fc39.noarch 15/15 Upgraded: dnf-4.18.2-1.fc40.noarch dnf-data-4.18.2-1.fc40.noarch python3-dnf-4.18.2-1.fc40.noarch yum-4.18.2-1.fc40.noarch Installed: dbus-libs-1:1.14.10-1.fc40.aarch64 python3-dateutil-1:2.8.2-11.fc40.noarch python3-dbus-1.3.2-4.fc39.aarch64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.4-1.fc40.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.aarch64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-aarch64-1704460606.352452/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.0-1.fc39.aarch64 rpm-sequoia-1.5.0-1.fc39.aarch64 python3-dnf-4.18.2-1.fc40.noarch python3-dnf-plugins-core-4.4.4-1.fc40.noarch yum-4.18.2-1.fc40.noarch Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 31 MB/s | 1.7 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 215 MB/s | 71 MB 00:00 fedora 22 MB/s | 86 MB 00:03 updates 18 MB/s | 25 MB 00:01 Dependencies resolved. ========================================================================================================================================= Package Arch Version Repository Size ========================================================================================================================================= Installing group/module packages: bash aarch64 5.2.21-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M bzip2 aarch64 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 52 k coreutils aarch64 9.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M cpio aarch64 2.14-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 270 k diffutils aarch64 3.10-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 387 k fedora-release-common noarch 40-0.26 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20 k findutils aarch64 1:4.9.0-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 485 k gawk aarch64 5.2.2-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 M glibc-minimal-langpack aarch64 2.38.9000-30.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 89 k grep aarch64 3.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 285 k gzip aarch64 1.12-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 158 k info aarch64 7.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183 k patch aarch64 2.7.6-22.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 123 k redhat-rpm-config noarch 274-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 74 k rpm-build aarch64 4.19.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 72 k sed aarch64 4.8-14.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 295 k shadow-utils aarch64 2:4.14.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M tar aarch64 2:1.35-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 845 k unzip aarch64 6.0-62.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183 k util-linux aarch64 2.39.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M which aarch64 2.21-40.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 42 k xz aarch64 5.4.5-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 531 k Installing dependencies: alternatives aarch64 1.25-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38 k ansible-srpm-macros noarch 1-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k audit-libs aarch64 3.1.2-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 118 k authselect aarch64 1.4.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144 k authselect-libs aarch64 1.4.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235 k basesystem noarch 11-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 k binutils aarch64 2.41-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.8 M binutils-gold aarch64 2.41-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 978 k bzip2-libs aarch64 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43 k ca-certificates noarch 2023.2.62_v7.0.401-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 863 k coreutils-common aarch64 9.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M cracklib aarch64 2.9.11-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83 k crypto-policies noarch 20231204-1.git1e3a2e4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 69 k curl aarch64 8.5.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 368 k cyrus-sasl-lib aarch64 2.1.28-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 781 k debugedit aarch64 5.0-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78 k dwz aarch64 0.15-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136 k ed aarch64 1.19-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78 k efi-srpm-macros noarch 5-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22 k elfutils aarch64 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 546 k elfutils-debuginfod-client aarch64 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k elfutils-default-yama-scope noarch 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13 k elfutils-libelf aarch64 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 194 k elfutils-libs aarch64 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 259 k fedora-gpg-keys noarch 40-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 119 k fedora-release 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(59/153): kernel-srpm-macros-1.0-20.fc39.noarch 3.0 MB/s | 10 kB 00:00 (60/153): keyutils-libs-1.6.3-1.fc40.aarch64.rp 8.9 MB/s | 31 kB 00:00 (61/153): libacl-2.3.1-11.fc40.aarch64.rpm 7.8 MB/s | 24 kB 00:00 (62/153): krb5-libs-1.21.2-2.fc40.aarch64.rpm 119 MB/s | 764 kB 00:00 (63/153): libarchive-3.7.2-1.fc40.aarch64.rpm 76 MB/s | 402 kB 00:00 (64/153): libattr-2.5.1-9.fc40.aarch64.rpm 4.0 MB/s | 18 kB 00:00 (65/153): libblkid-2.39.3-1.fc40.aarch64.rpm 26 MB/s | 116 kB 00:00 (66/153): libcap-2.69-1.fc40.aarch64.rpm 20 MB/s | 84 kB 00:00 (67/153): libbrotli-1.1.0-1.fc40.aarch64.rpm 64 MB/s | 344 kB 00:00 (68/153): libcap-ng-0.8.4-2.fc40.aarch64.rpm 8.9 MB/s | 32 kB 00:00 (69/153): libcom_err-1.47.0-2.fc39.aarch64.rpm 6.1 MB/s | 26 kB 00:00 (70/153): libcurl-8.5.0-1.fc40.aarch64.rpm 75 MB/s | 338 kB 00:00 (71/153): libeconf-0.5.2-1.fc40.aarch64.rpm 7.2 MB/s | 30 kB 00:00 (72/153): libffi-3.4.4-5.fc40.aarch64.rpm 12 MB/s | 37 kB 00:00 (73/153): libfdisk-2.39.3-1.fc40.aarch64.rpm 39 MB/s | 158 kB 00:00 (74/153): libevent-2.1.12-9.fc39.aarch64.rpm 43 MB/s | 254 kB 00:00 (75/153): libgcc-13.2.1-6.fc40.aarch64.rpm 23 MB/s | 97 kB 00:00 (76/153): libgomp-13.2.1-6.fc40.aarch64.rpm 67 MB/s | 313 kB 00:00 (77/153): libidn2-2.3.4-3.fc39.aarch64.rpm 14 MB/s | 111 kB 00:00 (78/153): libmount-2.39.3-1.fc40.aarch64.rpm 34 MB/s | 153 kB 00:00 (79/153): libnghttp2-1.58.0-1.fc40.aarch64.rpm 19 MB/s | 76 kB 00:00 (80/153): libpkgconf-1.9.5-2.fc39.aarch64.rpm 12 MB/s | 38 kB 00:00 (81/153): libnsl2-2.0.0-6.fc39.aarch64.rpm 7.7 MB/s | 30 kB 00:00 (82/153): libpsl-0.21.2-4.fc39.aarch64.rpm 16 MB/s | 63 kB 00:00 (83/153): libpwquality-1.4.5-6.fc39.aarch64.rpm 25 MB/s | 109 kB 00:00 (84/153): libselinux-3.6-2.fc40.aarch64.rpm 19 MB/s | 87 kB 00:00 (85/153): libsemanage-3.6-1.fc40.aarch64.rpm 24 MB/s | 114 kB 00:00 (86/153): libsepol-3.6-1.fc40.aarch64.rpm 76 MB/s | 324 kB 00:00 (87/153): libsmartcols-2.39.3-1.fc40.aarch64.rp 16 MB/s | 66 kB 00:00 (88/153): libsigsegv-2.14-5.fc39.aarch64.rpm 5.9 MB/s | 27 kB 00:00 (89/153): libssh-config-0.10.6-2.fc40.noarch.rp 2.9 MB/s | 9.1 kB 00:00 (90/153): libssh-0.10.6-2.fc40.aarch64.rpm 50 MB/s | 213 kB 00:00 (91/153): libtasn1-4.19.0-3.fc39.aarch64.rpm 20 MB/s | 73 kB 00:00 (92/153): libtirpc-1.3.4-1.rc1.fc40.aarch64.rpm 27 MB/s | 95 kB 00:00 (93/153): libstdc++-13.2.1-6.fc40.aarch64.rpm 61 MB/s | 814 kB 00:00 (94/153): libutempter-1.2.1-10.fc39.aarch64.rpm 3.6 MB/s | 27 kB 00:00 (95/153): libuuid-2.39.3-1.fc40.aarch64.rpm 8.2 MB/s | 28 kB 00:00 (96/153): libunistring-1.1-5.fc40.aarch64.rpm 50 MB/s | 540 kB 00:00 (97/153): libverto-0.3.2-6.fc39.aarch64.rpm 6.4 MB/s | 21 kB 00:00 (98/153): libxcrypt-4.4.36-3.fc40.aarch64.rpm 30 MB/s | 123 kB 00:00 (99/153): libzstd-1.5.5-4.fc39.aarch64.rpm 60 MB/s | 280 kB 00:00 (100/153): lua-libs-5.4.6-3.fc39.aarch64.rpm 29 MB/s | 131 kB 00:00 (101/153): libxml2-2.12.3-1.fc40.aarch64.rpm 77 MB/s | 682 kB 00:00 (102/153): lua-srpm-macros-1-9.fc39.noarch.rpm 2.2 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pam-1.5.3-9.fc40.aarch64.rpm 50 MB/s | 521 kB 00:00 (118/153): pcre2-syntax-10.42-2.fc40.noarch.rpm 26 MB/s | 143 kB 00:00 (119/153): perl-srpm-macros-1-51.fc39.noarch.rp 2.5 MB/s | 8.0 kB 00:00 (120/153): pkgconf-m4-1.9.5-2.fc39.noarch.rpm 5.2 MB/s | 14 kB 00:00 (121/153): pkgconf-1.9.5-2.fc39.aarch64.rpm 13 MB/s | 42 kB 00:00 (122/153): pkgconf-pkg-config-1.9.5-2.fc39.aarc 3.5 MB/s | 9.6 kB 00:00 (123/153): popt-1.19-3.fc39.aarch64.rpm 19 MB/s | 59 kB 00:00 (124/153): publicsuffix-list-dafsa-20230812-1.f 18 MB/s | 57 kB 00:00 (125/153): pyproject-srpm-macros-1.11.0-1.fc40. 5.0 MB/s | 15 kB 00:00 (126/153): python-srpm-macros-3.12-5.fc40.noarc 8.3 MB/s | 25 kB 00:00 (127/153): qt5-srpm-macros-5.15.12-1.fc40.noarc 2.8 MB/s | 8.4 kB 00:00 (128/153): qt6-srpm-macros-6.6.1-3.fc40.noarch. 3.3 MB/s | 8.8 kB 00:00 (129/153): redhat-rpm-config-274-1.fc40.noarch. 20 MB/s | 74 kB 00:00 (130/153): readline-8.2-4.fc39.aarch64.rpm 46 MB/s | 211 kB 00:00 (131/153): rpm-4.19.1-2.fc40.aarch64.rpm 94 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.aarch64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-6.fc40.aarch64 1/153 Running scriptlet: libgcc-13.2.1-6.fc40.aarch64 1/153 Installing : crypto-policies-20231204-1.git1e3a2e4.fc40.noarc 2/153 Running scriptlet: crypto-policies-20231204-1.git1e3a2e4.fc40.noarc 2/153 Installing : fedora-release-identity-basic-40-0.26.noarch 3/153 Installing : fedora-repos-rawhide-40-0.2.noarch 4/153 Installing : fedora-gpg-keys-40-0.2.noarch 5/153 Installing : fedora-repos-40-0.2.noarch 6/153 Installing : fedora-release-common-40-0.26.noarch 7/153 Installing : fedora-release-40-0.26.noarch 8/153 Installing : setup-2.14.5-1.fc40.noarch 9/153 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.5-1.fc40.noarch 9/153 Installing : filesystem-3.18-6.fc39.aarch64 10/153 Installing : basesystem-11-18.fc39.noarch 11/153 Installing : rust-srpm-macros-25.2-2.fc40.noarch 12/153 Installing : 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binutils-2.41-20.fc40.aarch64 131/153 Installing : elfutils-0.190-4.fc40.aarch64 132/153 Installing : gdb-minimal-14.1-1.fc40.aarch64 133/153 Installing : debugedit-5.0-12.fc40.aarch64 134/153 Installing : curl-8.5.0-1.fc40.aarch64 135/153 Installing : rpm-sequoia-1.5.0-2.fc40.aarch64 136/153 Installing : rpm-libs-4.19.1-2.fc40.aarch64 137/153 Running scriptlet: rpm-4.19.1-2.fc40.aarch64 138/153 Installing : rpm-4.19.1-2.fc40.aarch64 138/153 Installing : efi-srpm-macros-5-9.fc39.noarch 139/153 Installing : lua-srpm-macros-1-9.fc39.noarch 140/153 Installing : zig-srpm-macros-1-1.fc40.noarch 141/153 Installing : rpm-build-libs-4.19.1-2.fc40.aarch64 142/153 Installing : ansible-srpm-macros-1-11.fc39.noarch 143/153 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 144/153 Installing : forge-srpm-macros-0.2.0-1.fc40.noarch 145/153 Installing : go-srpm-macros-3.3.1-1.fc40.noarch 146/153 Installing : python-srpm-macros-3.12-5.fc40.noarch 147/153 Installing : redhat-rpm-config-274-1.fc40.noarch 148/153 Installing : rpm-build-4.19.1-2.fc40.aarch64 149/153 Installing : pyproject-srpm-macros-1.11.0-1.fc40.noarch 150/153 Installing : util-linux-2.39.3-1.fc40.aarch64 151/153 Installing : which-2.21-40.fc39.aarch64 152/153 Installing : info-7.1-1.fc40.aarch64 153/153 Running scriptlet: filesystem-3.18-6.fc39.aarch64 153/153 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 153/153 Running scriptlet: authselect-libs-1.4.3-1.fc40.aarch64 153/153 Running scriptlet: rpm-4.19.1-2.fc40.aarch64 153/153 Running scriptlet: info-7.1-1.fc40.aarch64 153/153 Installed: alternatives-1.25-1.fc39.aarch64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.aarch64 authselect-1.4.3-1.fc40.aarch64 authselect-libs-1.4.3-1.fc40.aarch64 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.aarch64 binutils-2.41-20.fc40.aarch64 binutils-gold-2.41-20.fc40.aarch64 bzip2-1.0.8-16.fc39.aarch64 bzip2-libs-1.0.8-16.fc39.aarch64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.aarch64 coreutils-common-9.4-1.fc40.aarch64 cpio-2.14-5.fc40.aarch64 cracklib-2.9.11-2.fc39.aarch64 crypto-policies-20231204-1.git1e3a2e4.fc40.noarch curl-8.5.0-1.fc40.aarch64 cyrus-sasl-lib-2.1.28-11.fc39.aarch64 debugedit-5.0-12.fc40.aarch64 diffutils-3.10-3.fc39.aarch64 dwz-0.15-3.fc39.aarch64 ed-1.19-4.fc39.aarch64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.aarch64 elfutils-debuginfod-client-0.190-4.fc40.aarch64 elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.aarch64 elfutils-libs-0.190-4.fc40.aarch64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.26.noarch fedora-release-common-40-0.26.noarch fedora-release-identity-basic-40-0.26.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.aarch64 file-libs-5.45-1.fc40.aarch64 filesystem-3.18-6.fc39.aarch64 findutils-1:4.9.0-6.fc40.aarch64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.aarch64 gdb-minimal-14.1-1.fc40.aarch64 gdbm-1:1.23-4.fc39.aarch64 gdbm-libs-1:1.23-4.fc39.aarch64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-30.fc40.aarch64 glibc-common-2.38.9000-30.fc40.aarch64 glibc-gconv-extra-2.38.9000-30.fc40.aarch64 glibc-minimal-langpack-2.38.9000-30.fc40.aarch64 gmp-1:6.2.1-5.fc39.aarch64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch grep-3.11-5.fc40.aarch64 gzip-1.12-6.fc39.aarch64 info-7.1-1.fc40.aarch64 jansson-2.13.1-7.fc39.aarch64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc40.aarch64 krb5-libs-1.21.2-2.fc40.aarch64 libacl-2.3.1-11.fc40.aarch64 libarchive-3.7.2-1.fc40.aarch64 libattr-2.5.1-9.fc40.aarch64 libblkid-2.39.3-1.fc40.aarch64 libbrotli-1.1.0-1.fc40.aarch64 libcap-2.69-1.fc40.aarch64 libcap-ng-0.8.4-2.fc40.aarch64 libcom_err-1.47.0-2.fc39.aarch64 libcurl-8.5.0-1.fc40.aarch64 libeconf-0.5.2-1.fc40.aarch64 libevent-2.1.12-9.fc39.aarch64 libfdisk-2.39.3-1.fc40.aarch64 libffi-3.4.4-5.fc40.aarch64 libgcc-13.2.1-6.fc40.aarch64 libgomp-13.2.1-6.fc40.aarch64 libidn2-2.3.4-3.fc39.aarch64 libmount-2.39.3-1.fc40.aarch64 libnghttp2-1.58.0-1.fc40.aarch64 libnsl2-2.0.0-6.fc39.aarch64 libpkgconf-1.9.5-2.fc39.aarch64 libpsl-0.21.2-4.fc39.aarch64 libpwquality-1.4.5-6.fc39.aarch64 libselinux-3.6-2.fc40.aarch64 libsemanage-3.6-1.fc40.aarch64 libsepol-3.6-1.fc40.aarch64 libsigsegv-2.14-5.fc39.aarch64 libsmartcols-2.39.3-1.fc40.aarch64 libssh-0.10.6-2.fc40.aarch64 libssh-config-0.10.6-2.fc40.noarch libstdc++-13.2.1-6.fc40.aarch64 libtasn1-4.19.0-3.fc39.aarch64 libtirpc-1.3.4-1.rc1.fc40.aarch64 libunistring-1.1-5.fc40.aarch64 libutempter-1.2.1-10.fc39.aarch64 libuuid-2.39.3-1.fc40.aarch64 libverto-0.3.2-6.fc39.aarch64 libxcrypt-4.4.36-3.fc40.aarch64 libxml2-2.12.3-1.fc40.aarch64 libzstd-1.5.5-4.fc39.aarch64 lua-libs-5.4.6-3.fc39.aarch64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.aarch64 mpfr-4.2.1-1.fc40.aarch64 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.aarch64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.aarch64 openssl-libs-1:3.1.4-1.fc40.aarch64 p11-kit-0.25.3-1.fc40.aarch64 p11-kit-trust-0.25.3-1.fc40.aarch64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-9.fc40.aarch64 pam-libs-1.5.3-9.fc40.aarch64 patch-2.7.6-22.fc39.aarch64 pcre2-10.42-2.fc40.aarch64 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.aarch64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.aarch64 popt-1.19-3.fc39.aarch64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.11.0-1.fc40.noarch python-srpm-macros-3.12-5.fc40.noarch qt5-srpm-macros-5.15.12-1.fc40.noarch qt6-srpm-macros-6.6.1-3.fc40.noarch readline-8.2-4.fc39.aarch64 redhat-rpm-config-274-1.fc40.noarch rpm-4.19.1-2.fc40.aarch64 rpm-build-4.19.1-2.fc40.aarch64 rpm-build-libs-4.19.1-2.fc40.aarch64 rpm-libs-4.19.1-2.fc40.aarch64 rpm-sequoia-1.5.0-2.fc40.aarch64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.aarch64 setup-2.14.5-1.fc40.noarch shadow-utils-2:4.14.0-2.fc40.aarch64 sqlite-libs-3.44.2-1.fc40.aarch64 systemd-libs-255.1-1.fc40.aarch64 tar-2:1.35-2.fc40.aarch64 unzip-6.0-62.fc39.aarch64 util-linux-2.39.3-1.fc40.aarch64 util-linux-core-2.39.3-1.fc40.aarch64 which-2.21-40.fc39.aarch64 xxhash-libs-0.8.2-1.fc39.aarch64 xz-5.4.5-1.fc40.aarch64 xz-libs-5.4.5-1.fc40.aarch64 zig-srpm-macros-1-1.fc40.noarch zip-3.0-39.fc40.aarch64 zlib-ng-compat-2.1.5-1.fc40.aarch64 zstd-1.5.5-4.fc39.aarch64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.aarch64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.aarch64 authselect-1.4.3-1.fc40.aarch64 authselect-libs-1.4.3-1.fc40.aarch64 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.aarch64 binutils-2.41-20.fc40.aarch64 binutils-gold-2.41-20.fc40.aarch64 bzip2-1.0.8-16.fc39.aarch64 bzip2-libs-1.0.8-16.fc39.aarch64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.aarch64 coreutils-common-9.4-1.fc40.aarch64 cpio-2.14-5.fc40.aarch64 cracklib-2.9.11-2.fc39.aarch64 crypto-policies-20231204-1.git1e3a2e4.fc40.noarch curl-8.5.0-1.fc40.aarch64 cyrus-sasl-lib-2.1.28-11.fc39.aarch64 debugedit-5.0-12.fc40.aarch64 diffutils-3.10-3.fc39.aarch64 dwz-0.15-3.fc39.aarch64 ed-1.19-4.fc39.aarch64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.aarch64 elfutils-debuginfod-client-0.190-4.fc40.aarch64 elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.aarch64 elfutils-libs-0.190-4.fc40.aarch64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.26.noarch fedora-release-common-40-0.26.noarch fedora-release-identity-basic-40-0.26.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.aarch64 file-libs-5.45-1.fc40.aarch64 filesystem-3.18-6.fc39.aarch64 findutils-4.9.0-6.fc40.aarch64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.aarch64 gdb-minimal-14.1-1.fc40.aarch64 gdbm-1.23-4.fc39.aarch64 gdbm-libs-1.23-4.fc39.aarch64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-30.fc40.aarch64 glibc-common-2.38.9000-30.fc40.aarch64 glibc-gconv-extra-2.38.9000-30.fc40.aarch64 glibc-minimal-langpack-2.38.9000-30.fc40.aarch64 gmp-6.2.1-5.fc39.aarch64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch grep-3.11-5.fc40.aarch64 gzip-1.12-6.fc39.aarch64 info-7.1-1.fc40.aarch64 jansson-2.13.1-7.fc39.aarch64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc40.aarch64 krb5-libs-1.21.2-2.fc40.aarch64 libacl-2.3.1-11.fc40.aarch64 libarchive-3.7.2-1.fc40.aarch64 libattr-2.5.1-9.fc40.aarch64 libblkid-2.39.3-1.fc40.aarch64 libbrotli-1.1.0-1.fc40.aarch64 libcap-2.69-1.fc40.aarch64 libcap-ng-0.8.4-2.fc40.aarch64 libcom_err-1.47.0-2.fc39.aarch64 libcurl-8.5.0-1.fc40.aarch64 libeconf-0.5.2-1.fc40.aarch64 libevent-2.1.12-9.fc39.aarch64 libfdisk-2.39.3-1.fc40.aarch64 libffi-3.4.4-5.fc40.aarch64 libgcc-13.2.1-6.fc40.aarch64 libgomp-13.2.1-6.fc40.aarch64 libidn2-2.3.4-3.fc39.aarch64 libmount-2.39.3-1.fc40.aarch64 libnghttp2-1.58.0-1.fc40.aarch64 libnsl2-2.0.0-6.fc39.aarch64 libpkgconf-1.9.5-2.fc39.aarch64 libpsl-0.21.2-4.fc39.aarch64 libpwquality-1.4.5-6.fc39.aarch64 libselinux-3.6-2.fc40.aarch64 libsemanage-3.6-1.fc40.aarch64 libsepol-3.6-1.fc40.aarch64 libsigsegv-2.14-5.fc39.aarch64 libsmartcols-2.39.3-1.fc40.aarch64 libssh-0.10.6-2.fc40.aarch64 libssh-config-0.10.6-2.fc40.noarch libstdc++-13.2.1-6.fc40.aarch64 libtasn1-4.19.0-3.fc39.aarch64 libtirpc-1.3.4-1.rc1.fc40.aarch64 libunistring-1.1-5.fc40.aarch64 libutempter-1.2.1-10.fc39.aarch64 libuuid-2.39.3-1.fc40.aarch64 libverto-0.3.2-6.fc39.aarch64 libxcrypt-4.4.36-3.fc40.aarch64 libxml2-2.12.3-1.fc40.aarch64 libzstd-1.5.5-4.fc39.aarch64 lua-libs-5.4.6-3.fc39.aarch64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.aarch64 mpfr-4.2.1-1.fc40.aarch64 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.aarch64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.aarch64 openssl-libs-3.1.4-1.fc40.aarch64 p11-kit-0.25.3-1.fc40.aarch64 p11-kit-trust-0.25.3-1.fc40.aarch64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-9.fc40.aarch64 pam-libs-1.5.3-9.fc40.aarch64 patch-2.7.6-22.fc39.aarch64 pcre2-10.42-2.fc40.aarch64 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.aarch64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.aarch64 popt-1.19-3.fc39.aarch64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.11.0-1.fc40.noarch python-srpm-macros-3.12-5.fc40.noarch qt5-srpm-macros-5.15.12-1.fc40.noarch qt6-srpm-macros-6.6.1-3.fc40.noarch readline-8.2-4.fc39.aarch64 redhat-rpm-config-274-1.fc40.noarch rpm-4.19.1-2.fc40.aarch64 rpm-build-4.19.1-2.fc40.aarch64 rpm-build-libs-4.19.1-2.fc40.aarch64 rpm-libs-4.19.1-2.fc40.aarch64 rpm-sequoia-1.5.0-2.fc40.aarch64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.aarch64 setup-2.14.5-1.fc40.noarch shadow-utils-4.14.0-2.fc40.aarch64 sqlite-libs-3.44.2-1.fc40.aarch64 systemd-libs-255.1-1.fc40.aarch64 tar-1.35-2.fc40.aarch64 unzip-6.0-62.fc39.aarch64 util-linux-2.39.3-1.fc40.aarch64 util-linux-core-2.39.3-1.fc40.aarch64 which-2.21-40.fc39.aarch64 xxhash-libs-0.8.2-1.fc39.aarch64 xz-5.4.5-1.fc40.aarch64 xz-libs-5.4.5-1.fc40.aarch64 zig-srpm-macros-1-1.fc40.noarch zip-3.0-39.fc40.aarch64 zlib-ng-compat-2.1.5-1.fc40.aarch64 zstd-1.5.5-4.fc39.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1704412800 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-aarch64-1704460606.352452/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-aarch64-1704460606.352452/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-aarch64-1704460606.352452/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-_w6u0vo1/snakemake/snakemake.spec) Config(child) 1 minutes 51 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/snakemake-7.32.4-3.fc40.src.rpm) Config(fedora-39-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-aarch64-bootstrap-1704460606.352452/root. INFO: reusing tmpfs at /var/lib/mock/fedora-39-aarch64-bootstrap-1704460606.352452/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-aarch64-1704460606.352452/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.0-1.fc39.aarch64 rpm-sequoia-1.5.0-1.fc39.aarch64 python3-dnf-4.18.2-1.fc40.noarch python3-dnf-plugins-core-4.4.4-1.fc40.noarch yum-4.18.2-1.fc40.noarch Finish: chroot init Start: build phase for snakemake-7.32.4-3.fc40.src.rpm Start: build setup for snakemake-7.32.4-3.fc40.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1704412800 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 63 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 174 kB/s | 3.8 kB 00:00 fedora 470 kB/s | 14 kB 00:00 updates 45 kB/s | 12 kB 00:00 Dependencies resolved. ======================================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================================== Installing: help2man noarch 1.49.3-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 217 k latexmk noarch 4.82-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 421 k librsvg2-tools aarch64 2.57.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 M make aarch64 1:4.4.1-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 578 k python3-boto3 noarch 1.34.12-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 338 k python3-configargparse noarch 1.7-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 52 k python3-devel aarch64 3.12.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 274 k python3-pandas aarch64 1.5.3-7.fc39~bootstrap copr_base 7.0 M python3-pytest noarch 7.4.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M python3-requests-mock noarch 1.10.0-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53 k python3-sphinx-latex noarch 1:7.2.6-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 k texlive-xetex aarch64 11:svn66203-77.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M texlive-xindy aarch64 11:svn65958-77.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 M vim-filesystem noarch 2:9.0.2190-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 18 k Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-10.fc39 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adobe-mappings-cmap-deprecated-2023062 23 MB/s | 113 kB 00:00 (5/665): adobe-mappings-pdf-20190401-5.fc39.noa 65 MB/s | 689 kB 00:00 (6/665): at-spi2-core-2.50.0-1.fc40.aarch64.rpm 58 MB/s | 352 kB 00:00 (7/665): atk-2.50.0-1.fc40.aarch64.rpm 20 MB/s | 81 kB 00:00 (8/665): python3-pandas-1.5.3-7.fc39~bootstrap. 87 MB/s | 7.0 MB 00:00 (9/665): avahi-libs-0.8-24.fc39.aarch64.rpm 5.3 MB/s | 67 kB 00:00 (10/665): biber-2.19-3.fc39.noarch.rpm 57 MB/s | 280 kB 00:00 (11/665): adobe-mappings-cmap-20230622-1.fc39.n 40 MB/s | 2.1 MB 00:00 (12/665): cairo-gobject-1.18.0-1.fc40.aarch64.r 2.4 MB/s | 18 kB 00:00 (13/665): cups-libs-2.4.7-6.fc40.aarch64.rpm 48 MB/s | 267 kB 00:00 (14/665): cairo-1.18.0-1.fc40.aarch64.rpm 31 MB/s | 692 kB 00:00 (15/665): dbus-1.14.10-1.fc40.aarch64.rpm 1.8 MB/s | 8.1 kB 00:00 (16/665): dbus-broker-35-2.fc40.aarch64.rpm 28 MB/s | 172 kB 00:00 (17/665): dbus-common-1.14.10-1.fc40.noarch.rpm 2.5 MB/s | 15 kB 00:00 (18/665): dbus-libs-1.14.10-1.fc40.aarch64.rpm 32 MB/s | 156 kB 00:00 (19/665): clisp-2.49.93-35.20230718git6692497.f 211 MB/s | 6.2 MB 00:00 (20/665): default-fonts-core-sans-4.0-9.fc40.no 2.5 MB/s | 25 kB 00:00 (21/665): desktop-file-utils-0.26-9.fc39.aarch6 7.8 MB/s | 71 kB 00:00 (22/665): emacs-filesystem-29.1-14.fc40.noarch. 2.3 MB/s | 7.4 kB 00:00 (23/665): expat-2.5.0-3.fc39.aarch64.rpm 25 MB/s | 108 kB 00:00 (24/665): fcgi-2.4.0-47.fc39.aarch64.rpm 14 MB/s | 46 kB 00:00 (25/665): ffcall-2.4-6.fc39.aarch64.rpm 11 MB/s | 37 kB 00:00 (26/665): flexiblas-3.3.1-5.fc39.aarch64.rpm 10 MB/s | 33 kB 00:00 (27/665): flexiblas-openblas-openmp-3.3.1-5.fc3 4.3 MB/s | 16 kB 00:00 (28/665): fontconfig-2.15.0-1.fc40.aarch64.rpm 46 MB/s | 260 kB 00:00 (29/665): fonts-filesystem-2.0.5-12.fc39.noarch 2.7 MB/s | 8.2 kB 00:00 (30/665): flexiblas-netlib-3.3.1-5.fc39.aarch64 164 MB/s | 2.6 MB 00:00 (31/665): fribidi-1.0.13-2.fc39.aarch64.rpm 13 MB/s | 91 kB 00:00 (32/665): freetype-2.13.1-2.fc39.aarch64.rpm 42 MB/s | 406 kB 00:00 (33/665): gc-8.2.2-4.fc39.aarch64.rpm 26 MB/s | 110 kB 00:00 (34/665): gd-2.3.3-12.fc39.aarch64.rpm 30 MB/s | 133 kB 00:00 (35/665): ghostscript-10.02.1-4.fc40.aarch64.rp 6.9 MB/s | 33 kB 00:00 (36/665): gdk-pixbuf2-modules-2.42.10-5.fc39.aa 15 MB/s | 87 kB 00:00 (37/665): gdk-pixbuf2-2.42.10-5.fc39.aarch64.rp 37 MB/s | 463 kB 00:00 (38/665): ghostscript-tools-fonts-10.02.1-4.fc4 3.6 MB/s | 12 kB 00:00 (39/665): ghostscript-tools-printing-10.02.1-4. 3.7 MB/s | 13 kB 00:00 (40/665): giflib-5.2.1-17.fc40.aarch64.rpm 15 MB/s | 51 kB 00:00 (41/665): gnutls-3.8.2-2.fc40.aarch64.rpm 62 MB/s | 1.0 MB 00:00 (42/665): google-droid-sans-fonts-20200215-17.f 160 MB/s | 2.7 MB 00:00 (43/665): google-noto-fonts-common-20230801-4.f 4.7 MB/s | 17 kB 00:00 (44/665): glib2-2.78.3-1.fc40.aarch64.rpm 95 MB/s | 2.8 MB 00:00 (45/665): google-noto-sans-vf-fonts-20230801-4. 60 MB/s | 583 kB 00:00 (46/665): gtk-update-icon-cache-3.24.39-1.fc40. 8.3 MB/s | 34 kB 00:00 (47/665): groff-base-1.23.0-3.fc40.aarch64.rpm 81 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libX11-common-1.8.7-1.fc40.noarch.rpm 31 MB/s | 144 kB 00:00 (63/665): libX11-xcb-1.8.7-1.fc40.aarch64.rpm 3.6 MB/s | 12 kB 00:00 (64/665): libX11-1.8.7-1.fc40.aarch64.rpm 84 MB/s | 644 kB 00:00 (65/665): libXau-1.0.11-4.fc40.aarch64.rpm 9.8 MB/s | 32 kB 00:00 (66/665): libXaw-1.0.15-1.fc40.aarch64.rpm 53 MB/s | 200 kB 00:00 (67/665): libXcomposite-0.4.6-1.fc40.aarch64.rp 7.6 MB/s | 24 kB 00:00 (68/665): libXcursor-1.2.1-5.fc40.aarch64.rpm 9.2 MB/s | 30 kB 00:00 (69/665): libXdamage-1.1.6-1.fc40.aarch64.rpm 7.1 MB/s | 23 kB 00:00 (70/665): libXext-1.3.5-4.fc40.aarch64.rpm 11 MB/s | 39 kB 00:00 (71/665): libXfixes-6.0.1-1.fc40.aarch64.rpm 6.0 MB/s | 19 kB 00:00 (72/665): libXft-2.3.8-4.fc40.aarch64.rpm 22 MB/s | 71 kB 00:00 (73/665): libXi-1.8.1-3.fc40.aarch64.rpm 11 MB/s | 39 kB 00:00 (74/665): libXinerama-1.1.5-4.fc40.aarch64.rpm 4.3 MB/s | 14 kB 00:00 (75/665): libXmu-1.1.4-4.fc40.aarch64.rpm 17 MB/s | 76 kB 00:00 (76/665): libXpm-3.5.17-1.fc40.aarch64.rpm 15 MB/s | 64 kB 00:00 (77/665): libXrandr-1.5.4-1.fc40.aarch64.rpm 7.6 MB/s | 27 kB 00:00 (78/665): libXrender-0.9.11-4.fc40.aarch64.rpm 8.1 MB/s | 27 kB 00:00 (79/665): libXtst-1.2.4-4.fc40.aarch64.rpm 7.1 MB/s | 21 kB 00:00 (80/665): libXt-1.3.0-1.fc40.aarch64.rpm 42 MB/s | 176 kB 00:00 (81/665): libXxf86vm-1.1.5-4.fc40.aarch64.rpm 6.0 MB/s | 18 kB 00:00 (82/665): libavif-0.11.1-11.fc39.aarch64.rpm 24 MB/s | 80 kB 00:00 (83/665): libb2-0.98.1-9.fc39.aarch64.rpm 6.8 MB/s | 24 kB 00:00 (84/665): libdatrie-0.2.13-7.fc39.aarch64.rpm 9.2 MB/s | 32 kB 00:00 (85/665): libaom-3.8.0-1.fc40.aarch64.rpm 154 MB/s | 1.5 MB 00:00 (86/665): libdav1d-1.2.1-2.fc39.aarch64.rpm 79 MB/s | 350 kB 00:00 (87/665): libdrm-2.4.117-1.fc40.aarch64.rpm 28 MB/s | 136 kB 00:00 (88/665): libdb-5.3.28-58.fc40.aarch64.rpm 92 MB/s | 735 kB 00:00 (89/665): libgfortran-13.2.1-6.fc40.aarch64.rpm 67 MB/s | 441 kB 00:00 (90/665): libglade2-2.6.4-30.fc39.aarch64.rpm 15 MB/s | 60 kB 00:00 (91/665): libglvnd-1.7.0-1.fc40.aarch64.rpm 28 MB/s | 126 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openblas-openmp-0.3.25-1.fc40.aarch6 156 MB/s | 3.9 MB 00:00 (122/665): pango-1.51.0-1.fc40.aarch64.rpm 32 MB/s | 339 kB 00:00 (123/665): perl-Authen-SASL-2.1700-1.fc40.noarc 10 MB/s | 57 kB 00:00 (124/665): mupdf-1.23.7-3.fc40.aarch64.rpm 192 MB/s | 11 MB 00:00 (125/665): perl-AutoLoader-5.74-503.fc40.noarch 1.5 MB/s | 21 kB 00:00 (126/665): pari-2.15.4-2.fc39.aarch64.rpm 126 MB/s | 3.5 MB 00:00 (127/665): perl-B-1.88-503.fc40.aarch64.rpm 22 MB/s | 178 kB 00:00 (128/665): perl-B-Hooks-EndOfScope-0.26-7.fc39. 4.7 MB/s | 38 kB 00:00 (129/665): perl-Business-ISBN-3.008-2.fc39.noar 9.0 MB/s | 32 kB 00:00 (130/665): perl-Business-ISBN-Data-20231220.001 10 MB/s | 40 kB 00:00 (131/665): perl-Business-ISMN-1.203-2.fc39.noar 8.0 MB/s | 25 kB 00:00 (132/665): perl-Business-ISSN-1.005-8.fc39.noar 6.0 MB/s | 18 kB 00:00 (133/665): perl-Carp-1.54-500.fc39.noarch.rpm 9.4 MB/s | 29 kB 00:00 (134/665): perl-Class-Accessor-0.51-18.fc39.noa 7.9 MB/s | 28 kB 00:00 (135/665): 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texlive-ucs-11:svn64114-70.fc40.noarch 612/665 Installing : texlive-upquote-11:svn26059.v1.3-70.fc40.noarch 613/665 Installing : texlive-dvipdfmx-11:svn66203-77.fc39.aarch64 614/665 Installing : texlive-xetex-11:svn66203-77.fc39.aarch64 615/665 Installing : gd-2.3.3-12.fc39.aarch64 616/665 Installing : texlive-dvipng-11:svn66203-77.fc39.aarch64 617/665 Installing : libXft-2.3.8-4.fc40.aarch64 618/665 Installing : texlive-xdvi-11:svn62387-77.fc39.aarch64 619/665 Installing : texlive-luahbtex-11:svn66186-77.fc39.aarch64 620/665 Installing : texlive-collection-basic-11:svn59159-70.fc40.noa 621/665 Installing : texlive-collection-fontsrecommended-11:svn54074- 622/665 Installing : texlive-collection-latex-11:svn63515-70.fc40.noa 623/665 Installing : google-droid-sans-fonts-20200215-17.fc40.noarch 624/665 Installing : giflib-5.2.1-17.fc40.aarch64 625/665 Installing : leptonica-1.84.1-1.fc40.aarch64 626/665 Installing : tesseract-langpack-eng-4.1.0-6.fc39.noarch 627/665 Installing : tesseract-5.3.3-1.fc40.aarch64 628/665 Installing : mupdf-1.23.7-3.fc40.aarch64 629/665 Installing : gc-8.2.2-4.fc39.aarch64 630/665 Installing : guile22-2.2.7-9.fc39.aarch64 631/665 Installing : fribidi-1.0.13-2.fc39.aarch64 632/665 Installing : pango-1.51.0-1.fc40.aarch64 633/665 Installing : librsvg2-2.57.1-1.fc40.aarch64 634/665 Installing : rsvg-pixbuf-loader-2.57.1-1.fc40.aarch64 635/665 Installing : gdk-pixbuf2-modules-2.42.10-5.fc39.aarch64 636/665 Installing : ffcall-2.4-6.fc39.aarch64 637/665 Installing : fcgi-2.4.0-47.fc39.aarch64 638/665 Installing : dbus-common-1:1.14.10-1.fc40.noarch 639/665 Running scriptlet: dbus-common-1:1.14.10-1.fc40.noarch 639/665 Running scriptlet: dbus-broker-35-2.fc40.aarch64 640/665 Installing : dbus-broker-35-2.fc40.aarch64 640/665 Running scriptlet: dbus-broker-35-2.fc40.aarch64 640/665 Installing : dbus-1:1.14.10-1.fc40.aarch64 641/665 Installing : at-spi2-core-2.50.0-1.fc40.aarch64 642/665 Installing : atk-2.50.0-1.fc40.aarch64 643/665 Installing : gtk2-2.24.33-15.fc39.aarch64 644/665 Installing : libglade2-2.6.4-30.fc39.aarch64 645/665 Installing : adobe-mappings-pdf-20190401-5.fc39.noarch 646/665 Installing : libgs-10.02.1-4.fc40.aarch64 647/665 Installing : ghostscript-tools-fonts-10.02.1-4.fc40.aarch64 648/665 Installing : ghostscript-tools-printing-10.02.1-4.fc40.aarch6 649/665 Installing : ghostscript-10.02.1-4.fc40.aarch64 650/665 Installing : texlive-dvisvgm-11:svn66532-77.fc39.aarch64 651/665 Installing : libsvm-3.32-2.fc39.aarch64 652/665 Installing : clisp-2.49.93-35.20230718git6692497.fc40.aarch64 653/665 Installing : texlive-xindy-11:svn65958-77.fc39.aarch64 654/665 Installing : python3-sphinx-latex-1:7.2.6-4.fc40.noarch 655/665 Installing : latexmk-4.82-1.fc40.noarch 656/665 Installing : librsvg2-tools-2.57.1-1.fc40.aarch64 657/665 Installing : make-1:4.4.1-2.fc39.aarch64 658/665 Installing : help2man-1.49.3-3.fc39.noarch 659/665 Installing : python3-pandas-1.5.3-7.fc39~bootstrap.aarch64 660/665 Installing : python3-pytest-7.4.3-1.fc40.noarch 661/665 Installing : python3-requests-mock-1.10.0-5.fc39.noarch 662/665 Installing : python3-devel-3.12.1-2.fc40.aarch64 663/665 Installing : python3-boto3-1.34.12-1.fc40.noarch 664/665 Installing : python3-configargparse-1.7-1.fc40.noarch 665/665 Running scriptlet: texlive-base-11:20230311-77.fc39.aarch64 665/665 Running scriptlet: urw-base35-bookman-fonts-20200910-18.fc39.noarch 665/665 Running scriptlet: urw-base35-c059-fonts-20200910-18.fc39.noarch 665/665 Running scriptlet: urw-base35-d050000l-fonts-20200910-18.fc39.noarc 665/665 Running scriptlet: urw-base35-gothic-fonts-20200910-18.fc39.noarch 665/665 Running scriptlet: urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39 665/665 Running scriptlet: urw-base35-nimbus-roman-fonts-20200910-18.fc39.n 665/665 Running scriptlet: urw-base35-nimbus-sans-fonts-20200910-18.fc39.no 665/665 Running scriptlet: urw-base35-p052-fonts-20200910-18.fc39.noarch 665/665 Running scriptlet: urw-base35-standard-symbols-ps-fonts-20200910-18 665/665 Running scriptlet: urw-base35-z003-fonts-20200910-18.fc39.noarch 665/665 Running scriptlet: fontconfig-2.15.0-1.fc40.aarch64 665/665 Running scriptlet: python3-configargparse-1.7-1.fc40.noarch 665/665 Installed: abattis-cantarell-vf-fonts-0.301-10.fc39.noarch adobe-mappings-cmap-20230622-1.fc39.noarch adobe-mappings-cmap-deprecated-20230622-1.fc39.noarch adobe-mappings-pdf-20190401-5.fc39.noarch at-spi2-core-2.50.0-1.fc40.aarch64 atk-2.50.0-1.fc40.aarch64 avahi-libs-0.8-24.fc39.aarch64 biber-2.19-3.fc39.noarch cairo-1.18.0-1.fc40.aarch64 cairo-gobject-1.18.0-1.fc40.aarch64 clisp-2.49.93-35.20230718git6692497.fc40.aarch64 cups-libs-1:2.4.7-6.fc40.aarch64 dbus-1:1.14.10-1.fc40.aarch64 dbus-broker-35-2.fc40.aarch64 dbus-common-1:1.14.10-1.fc40.noarch dbus-libs-1:1.14.10-1.fc40.aarch64 default-fonts-core-sans-4.0-9.fc40.noarch desktop-file-utils-0.26-9.fc39.aarch64 emacs-filesystem-1:29.1-14.fc40.noarch expat-2.5.0-3.fc39.aarch64 fcgi-2.4.0-47.fc39.aarch64 ffcall-2.4-6.fc39.aarch64 flexiblas-3.3.1-5.fc39.aarch64 flexiblas-netlib-3.3.1-5.fc39.aarch64 flexiblas-openblas-openmp-3.3.1-5.fc39.aarch64 fontconfig-2.15.0-1.fc40.aarch64 fonts-filesystem-1:2.0.5-12.fc39.noarch freetype-2.13.1-2.fc39.aarch64 fribidi-1.0.13-2.fc39.aarch64 gc-8.2.2-4.fc39.aarch64 gd-2.3.3-12.fc39.aarch64 gdk-pixbuf2-2.42.10-5.fc39.aarch64 gdk-pixbuf2-modules-2.42.10-5.fc39.aarch64 ghostscript-10.02.1-4.fc40.aarch64 ghostscript-tools-fonts-10.02.1-4.fc40.aarch64 ghostscript-tools-printing-10.02.1-4.fc40.aarch64 giflib-5.2.1-17.fc40.aarch64 glib2-2.78.3-1.fc40.aarch64 gnutls-3.8.2-2.fc40.aarch64 google-droid-sans-fonts-20200215-17.fc40.noarch google-noto-fonts-common-20230801-4.fc40.noarch google-noto-sans-vf-fonts-20230801-4.fc40.noarch graphite2-1.3.14-13.fc40.aarch64 groff-base-1.23.0-3.fc40.aarch64 gtk-update-icon-cache-3.24.39-1.fc40.aarch64 gtk2-2.24.33-15.fc39.aarch64 guile22-2.2.7-9.fc39.aarch64 gumbo-parser-1:0.10.1-29.fc39.aarch64 harfbuzz-8.3.0-2.fc40.aarch64 help2man-1.49.3-3.fc39.noarch hicolor-icon-theme-0.17-16.fc39.noarch highway-1.0.7-1.fc40.aarch64 jbig2dec-libs-0.20-1.fc40.aarch64 jbigkit-libs-2.1-27.fc40.aarch64 latexmk-4.82-1.fc40.noarch lcms2-2.15-2.fc39.aarch64 leptonica-1.84.1-1.fc40.aarch64 libICE-1.1.1-1.fc40.aarch64 libSM-1.2.4-1.fc40.aarch64 libX11-1.8.7-1.fc40.aarch64 libX11-common-1.8.7-1.fc40.noarch libX11-xcb-1.8.7-1.fc40.aarch64 libXau-1.0.11-4.fc40.aarch64 libXaw-1.0.15-1.fc40.aarch64 libXcomposite-0.4.6-1.fc40.aarch64 libXcursor-1.2.1-5.fc40.aarch64 libXdamage-1.1.6-1.fc40.aarch64 libXext-1.3.5-4.fc40.aarch64 libXfixes-6.0.1-1.fc40.aarch64 libXft-2.3.8-4.fc40.aarch64 libXi-1.8.1-3.fc40.aarch64 libXinerama-1.1.5-4.fc40.aarch64 libXmu-1.1.4-4.fc40.aarch64 libXpm-3.5.17-1.fc40.aarch64 libXrandr-1.5.4-1.fc40.aarch64 libXrender-0.9.11-4.fc40.aarch64 libXt-1.3.0-1.fc40.aarch64 libXtst-1.2.4-4.fc40.aarch64 libXxf86vm-1.1.5-4.fc40.aarch64 libaom-3.8.0-1.fc40.aarch64 libavif-0.11.1-11.fc39.aarch64 libb2-0.98.1-9.fc39.aarch64 libdatrie-0.2.13-7.fc39.aarch64 libdav1d-1.2.1-2.fc39.aarch64 libdb-5.3.28-58.fc40.aarch64 libdrm-2.4.117-1.fc40.aarch64 libgfortran-13.2.1-6.fc40.aarch64 libglade2-2.6.4-30.fc39.aarch64 libglvnd-1:1.7.0-1.fc40.aarch64 libglvnd-glx-1:1.7.0-1.fc40.aarch64 libgs-10.02.1-4.fc40.aarch64 libicu-73.2-3.fc40.aarch64 libijs-0.35-19.fc39.aarch64 libimagequant-4.0.3-2.fc40.aarch64 libjpeg-turbo-2.1.4-3.fc39.aarch64 libjxl-1:0.8.2-3.fc40.aarch64 liblerc-4.0.0-4.fc39.aarch64 libpaper-1:2.1.1-1.fc39.aarch64 libpng-2:1.6.40-1.fc40.aarch64 libpq-16.1-1.fc40.aarch64 librsvg2-2.57.1-1.fc40.aarch64 librsvg2-tools-2.57.1-1.fc40.aarch64 libsvm-3.32-2.fc39.aarch64 libthai-0.1.29-6.fc39.aarch64 libtiff-4.5.0-3.fc40.aarch64 libtool-ltdl-2.4.7-8.fc40.aarch64 libwebp-1.3.2-2.fc40.aarch64 libxcb-1.16-2.fc40.aarch64 libxshmfence-1.3.2-1.fc40.aarch64 libxslt-1.1.39-1.fc40.aarch64 mailcap-2.1.54-2.fc39.noarch make-1:4.4.1-2.fc39.aarch64 mesa-libGL-23.3.2-4.fc40.aarch64 mesa-libglapi-23.3.2-4.fc40.aarch64 mpdecimal-2.5.1-7.fc39.aarch64 mupdf-1.23.7-3.fc40.aarch64 ncurses-6.4-8.20231001.fc40.aarch64 nettle-3.9.1-2.fc39.aarch64 openblas-0.3.25-1.fc40.aarch64 openblas-openmp-0.3.25-1.fc40.aarch64 openjpeg2-2.5.0-5.fc40.aarch64 pango-1.51.0-1.fc40.aarch64 pari-2.15.4-2.fc39.aarch64 perl-Authen-SASL-2.1700-1.fc40.noarch perl-AutoLoader-5.74-503.fc40.noarch perl-B-1.88-503.fc40.aarch64 perl-B-Hooks-EndOfScope-0.26-7.fc39.noarch perl-Business-ISBN-3.008-2.fc39.noarch perl-Business-ISBN-Data-20231220.001-1.fc40.noarch perl-Business-ISMN-1.203-2.fc39.noarch perl-Business-ISSN-1.005-8.fc39.noarch perl-Carp-1.54-500.fc39.noarch perl-Class-Accessor-0.51-18.fc39.noarch perl-Class-Data-Inheritable-0.09-6.fc39.noarch perl-Class-Inspector-1.36-14.fc39.noarch perl-Class-Method-Modifiers-2.15-2.fc39.noarch perl-Class-Singleton-1.6-9.fc39.noarch perl-Class-Struct-0.68-503.fc40.noarch perl-Clone-0.46-4.fc39.aarch64 perl-Compress-Raw-Bzip2-2.206-1.fc39.aarch64 perl-Compress-Raw-Zlib-2.206-1.fc39.aarch64 perl-Convert-ASN1-0.34-1.fc40.noarch perl-Data-Compare-1.29-2.fc39.noarch perl-Data-Dump-1.25-8.fc39.noarch perl-Data-Dumper-2.188-501.fc39.aarch64 perl-Data-OptList-0.114-2.fc39.noarch perl-Data-Uniqid-0.12-31.fc39.noarch perl-Date-ISO8601-0.005-18.fc39.noarch perl-Date-Manip-6.93-2.fc40.noarch perl-DateTime-2:1.65-1.fc40.aarch64 perl-DateTime-Calendar-Julian-0.107-5.fc39.noarch perl-DateTime-Format-Builder-0.8300-11.fc39.noarch perl-DateTime-Format-Strptime-1:1.79-8.fc39.noarch perl-DateTime-Locale-1.40-1.fc40.noarch perl-DateTime-TimeZone-2.61-1.fc40.noarch perl-DateTime-TimeZone-SystemV-0.010-19.fc39.noarch perl-DateTime-TimeZone-Tzfile-0.011-19.fc39.noarch perl-Devel-CallChecker-0.009-3.fc39.aarch64 perl-Devel-Caller-2.07-3.fc39.aarch64 perl-Devel-GlobalDestruction-0.14-22.fc39.noarch perl-Devel-LexAlias-0.05-34.fc39.aarch64 perl-Devel-StackTrace-1:2.04-16.fc39.noarch perl-Digest-1.20-500.fc39.noarch perl-Digest-HMAC-1.04-8.fc39.noarch perl-Digest-MD5-2.59-1.fc40.aarch64 perl-Digest-SHA-1:6.04-501.fc39.aarch64 perl-Dist-CheckConflicts-0.11-28.fc39.noarch perl-DynaLoader-1.54-503.fc40.aarch64 perl-DynaLoader-Functions-0.004-2.fc39.noarch perl-Email-Date-Format-1.008-2.fc39.noarch perl-Encode-4:3.20-501.fc40.aarch64 perl-Encode-Locale-1.05-27.fc39.noarch perl-English-1.11-503.fc40.noarch perl-Env-1.06-500.fc39.noarch perl-Errno-1.37-503.fc40.aarch64 perl-Eval-Closure-0.14-21.fc39.noarch perl-Exception-Class-1.45-8.fc39.noarch perl-Exporter-5.78-1.fc40.noarch perl-ExtUtils-MM-Utils-2:7.70-501.fc39.noarch perl-Fcntl-1.15-503.fc40.aarch64 perl-File-Basename-2.86-503.fc40.noarch perl-File-Compare-1.100.700-503.fc40.noarch perl-File-Copy-2.41-503.fc40.noarch perl-File-Find-1.43-503.fc40.noarch perl-File-Find-Rule-0.34-26.fc39.noarch perl-File-Listing-6.16-1.fc39.noarch perl-File-Path-2.18-501.fc40.noarch perl-File-ShareDir-1.118-9.fc39.noarch perl-File-Slurper-0.014-3.fc39.noarch perl-File-Temp-1:0.231.100-501.fc40.noarch perl-File-stat-1.13-503.fc40.noarch perl-FileHandle-2.05-503.fc40.noarch perl-Filter-2:1.64-501.fc39.aarch64 perl-GSSAPI-0.28-43.fc39.aarch64 perl-Getopt-Long-1:2.57-1.fc40.noarch perl-Getopt-Std-1.13-503.fc40.noarch perl-HTML-Parser-3.81-3.fc39.aarch64 perl-HTML-Tagset-3.20-55.fc40.noarch perl-HTTP-Cookies-6.11-1.fc40.noarch perl-HTTP-Date-6.06-2.fc39.noarch perl-HTTP-Message-6.45-1.fc40.noarch perl-HTTP-Negotiate-6.01-36.fc39.noarch perl-HTTP-Tiny-0.088-3.fc39.noarch perl-Hash-Util-FieldHash-1.26-503.fc40.aarch64 perl-I18N-LangTags-0.45-503.fc40.noarch perl-I18N-Langinfo-0.22-503.fc40.aarch64 perl-IO-1.52-503.fc40.aarch64 perl-IO-Compress-2.206-1.fc39.noarch perl-IO-HTML-1.004-11.fc39.noarch perl-IO-Socket-IP-0.42-1.fc39.noarch perl-IO-Socket-SSL-2.084-1.fc40.noarch perl-IO-String-1.08-48.fc39.noarch perl-IPC-Cmd-2:1.04-502.fc40.noarch perl-IPC-Open3-1.22-503.fc40.noarch perl-IPC-Run3-0.048-29.fc39.noarch perl-IPC-SysV-2.09-503.fc40.aarch64 perl-IPC-System-Simple-1.30-11.fc39.noarch perl-JSON-4.10-3.fc39.noarch perl-LDAP-1:0.68-11.fc39.noarch perl-LWP-MediaTypes-6.04-15.fc39.noarch perl-LWP-Protocol-https-6.11-1.fc39.noarch perl-Lingua-Translit-0.29-4.fc39.noarch perl-List-AllUtils-0.19-10.fc39.noarch perl-List-SomeUtils-0.59-3.fc39.noarch perl-List-UtilsBy-0.12-7.fc39.noarch perl-Locale-Maketext-1.33-501.fc39.noarch perl-Locale-Maketext-Simple-1:0.21-503.fc40.noarch perl-Log-Dispatch-2.71-2.fc39.noarch perl-Log-Dispatch-FileRotate-1.38-7.fc39.noarch perl-Log-Log4perl-1.57-3.fc39.noarch perl-MIME-Base64-3.16-501.fc40.aarch64 perl-MIME-Charset-1.013.1-3.fc39.noarch perl-MIME-Lite-3.033-8.fc39.noarch perl-MIME-Types-2.24-3.fc39.noarch perl-MRO-Compat-0.15-7.fc39.noarch perl-Mail-Sender-1:0.903-22.fc39.noarch perl-Mail-Sendmail-0.80-18.fc39.noarch perl-MailTools-2.21-14.fc39.noarch perl-Math-BigInt-1:2.0030.01-1.fc40.noarch perl-Math-Complex-1.62-503.fc40.noarch perl-Module-CoreList-1:5.20231230-1.fc40.noarch perl-Module-Implementation-0.09-37.fc39.noarch perl-Module-Load-1:0.36-501.fc40.noarch perl-Module-Load-Conditional-0.74-501.fc40.noarch perl-Module-Metadata-1.000038-3.fc39.noarch perl-Module-Runtime-0.016-20.fc39.noarch perl-Mozilla-CA-20231213-1.fc40.noarch perl-NTLM-1.09-36.fc39.noarch perl-Net-HTTP-6.23-2.fc39.noarch perl-Net-SMTP-SSL-1.04-22.fc40.noarch perl-Net-SSLeay-1.92-10.fc39.aarch64 perl-Number-Compare-0.03-36.fc39.noarch perl-Opcode-1.64-503.fc40.aarch64 perl-POSIX-2.13-503.fc40.aarch64 perl-Package-Generator-1.106-29.fc39.noarch perl-Package-Stash-0.40-5.fc39.noarch perl-Package-Stash-XS-0.30-5.fc39.aarch64 perl-PadWalker-2.5-10.fc39.aarch64 perl-Params-Check-1:0.38-500.fc39.noarch perl-Params-Classify-0.015-20.fc39.aarch64 perl-Params-Util-1.102-12.fc39.aarch64 perl-Params-Validate-1.31-5.fc39.aarch64 perl-Params-ValidationCompiler-0.31-3.fc39.noarch 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urw-base35-standard-symbols-ps-fonts-20200910-18.fc39.noarch urw-base35-z003-fonts-20200910-18.fc39.noarch vim-filesystem-2:9.0.2190-1.fc40.noarch xdg-utils-1.2.0~git20231511.21fb316-1.fc40.noarch xml-common-0.6.3-62.fc40.noarch xpdf-libs-1:4.04-10.fc39.aarch64 xprop-1.2.5-4.fc39.aarch64 zziplib-0.13.72-5.fc39.aarch64 Complete! Finish: build setup for snakemake-7.32.4-3.fc40.src.rpm Start: rpmbuild snakemake-7.32.4-3.fc40.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1704412800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.uJDBCV + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf snakemake-7.32.4 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.32.4.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd snakemake-7.32.4 + rm -rf /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP . recursedown('.') recursedown('./.github') 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recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/two/plots') recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/two/plots/alpha~1') recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/two/plots/alpha~2') recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/two/simulations') recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/two/simulations/alpha~1') recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/two/simulations/alpha~2') recursedown('./tests/test_paramspace_single_wildcard/scripts') recursedown('./tests/test_parser') recursedown('./tests/test_parser/expected-results') recursedown('./tests/test_parsing_terminal_comment_following_statement') recursedown('./tests/test_parsing_terminal_comment_following_statement/expected-results') recursedown('./tests/test_pathlib') recursedown('./tests/test_pathlib/expected-results') recursedown('./tests/test_pathlib/expected-results/outdir') recursedown('./tests/test_pathlib/expected-results/outdir/function_unpacking') recursedown('./tests/test_pathlib_missing_file') recursedown('./tests/test_pathlib_missing_file/expected-results') recursedown('./tests/test_peppy') recursedown('./tests/test_peppy/expected-results') recursedown('./tests/test_peppy/pep') recursedown('./tests/test_peppy/workflow') recursedown('./tests/test_peppy/workflow/schemas') recursedown('./tests/test_persistent_dict') recursedown('./tests/test_persistent_dict/expected-results') recursedown('./tests/test_pipe_depend') recursedown('./tests/test_pipe_depend/expected-results') recursedown('./tests/test_pipes') recursedown('./tests/test_pipes/expected-results') recursedown('./tests/test_pipes2') recursedown('./tests/test_pipes2/expected-results') recursedown('./tests/test_pipes_fail') recursedown('./tests/test_pipes_fail/expected-results') recursedown('./tests/test_pipes_multiple') recursedown('./tests/test_pipes_multiple/expected-results') recursedown('./tests/test_prebuilt_conda_script') recursedown('./tests/test_prebuilt_conda_script/dummy_package') recursedown('./tests/test_prebuilt_conda_script/dummy_package/src') recursedown('./tests/test_prebuilt_conda_script/dummy_package/src/dummy') recursedown('./tests/test_prebuilt_conda_script/dummy_package/src/dummy.egg-info') recursedown('./tests/test_prebuilt_conda_script/expected-results') recursedown('./tests/test_profile') recursedown('./tests/test_profile/expected-results') recursedown('./tests/test_protected_symlink_output') recursedown('./tests/test_protected_symlink_output/expected-results') recursedown('./tests/test_r_wrapper') recursedown('./tests/test_remote') recursedown('./tests/test_remote/expected-results') recursedown('./tests/test_remote_auto') recursedown('./tests/test_remote_auto/expected-results') recursedown('./tests/test_remote_azure') recursedown('./tests/test_remote_gs') 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recursedown('./tests/test_report/data') recursedown('./tests/test_report/envs') recursedown('./tests/test_report/expected-results') recursedown('./tests/test_report/report') recursedown('./tests/test_report/testdir') recursedown('./tests/test_report_dir') recursedown('./tests/test_report_dir/expected-results') recursedown('./tests/test_report_dir/test') recursedown('./tests/test_report_dir/test/js') recursedown('./tests/test_report_display_code') recursedown('./tests/test_report_display_code/expected-results') recursedown('./tests/test_report_zip') recursedown('./tests/test_report_zip/.snakemake') recursedown('./tests/test_report_zip/.snakemake/metadata') recursedown('./tests/test_report_zip/data') recursedown('./tests/test_report_zip/envs') recursedown('./tests/test_report_zip/expected-results') recursedown('./tests/test_report_zip/report') recursedown('./tests/test_report_zip/testdir') recursedown('./tests/test_restartable_job_cmd_exit_1') recursedown('./tests/test_restartable_job_cmd_exit_1/expected-results') recursedown('./tests/test_restartable_job_qsub_exit_1') recursedown('./tests/test_restartable_job_qsub_exit_1/expected-results') recursedown('./tests/test_retries') recursedown('./tests/test_retries/expected-results') recursedown('./tests/test_retries_not_overriden') recursedown('./tests/test_retries_not_overriden/expected-results') recursedown('./tests/test_rule_defined_in_for_loop') recursedown('./tests/test_rule_defined_in_for_loop/expected-results') recursedown('./tests/test_rule_inheritance_globals') recursedown('./tests/test_rule_inheritance_globals/.snakemake') recursedown('./tests/test_rule_inheritance_globals/.snakemake/metadata') recursedown('./tests/test_rule_inheritance_globals/expected-results') recursedown('./tests/test_ruledag') recursedown('./tests/test_ruledeps') recursedown('./tests/test_ruledeps/expected-results') recursedown('./tests/test_run_namedlist') 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recursedown('./tests/test_script_py') recursedown('./tests/test_script_py/expected-results') recursedown('./tests/test_script_py/scripts') recursedown('./tests/test_service_jobs') recursedown('./tests/test_service_jobs/expected-results') recursedown('./tests/test_set_resources') recursedown('./tests/test_set_resources/expected-results') recursedown('./tests/test_shadow') recursedown('./tests/test_shadow/expected-results') recursedown('./tests/test_shadow_copy') recursedown('./tests/test_shadow_copy/expected-results') recursedown('./tests/test_shadow_prefix') recursedown('./tests/test_shadow_prefix/expected-results') recursedown('./tests/test_shadowed_log') recursedown('./tests/test_shadowed_log/expected-results') recursedown('./tests/test_shell') recursedown('./tests/test_shell/expected-results') recursedown('./tests/test_singularity') recursedown('./tests/test_singularity/expected-results') recursedown('./tests/test_singularity_conda') recursedown('./tests/test_singularity_conda/expected-results') recursedown('./tests/test_singularity_global') recursedown('./tests/test_singularity_global/expected-results') recursedown('./tests/test_singularity_module') recursedown('./tests/test_singularity_module/expected-results') recursedown('./tests/test_singularity_none') recursedown('./tests/test_singularity_none/expected-results') recursedown('./tests/test_slurm_mpi') recursedown('./tests/test_slurm_mpi/envs') recursedown('./tests/test_slurm_mpi/expected-results') recursedown('./tests/test_solver') recursedown('./tests/test_solver/expected-results') recursedown('./tests/test_source_path') recursedown('./tests/test_source_path/expected-results') recursedown('./tests/test_source_path/workflow') recursedown('./tests/test_source_path/workflow/resources') recursedown('./tests/test_spaces_in_fnames') recursedown('./tests/test_spaces_in_fnames/expected-results') recursedown('./tests/test_speed') recursedown('./tests/test_srcdir') recursedown('./tests/test_srcdir/expected-results') recursedown('./tests/test_static_remote') recursedown('./tests/test_static_remote/expected-results') recursedown('./tests/test_strict_mode') recursedown('./tests/test_strict_mode/expected-results') recursedown('./tests/test_string_resources') recursedown('./tests/test_string_resources/expected-results') recursedown('./tests/test_subworkflow_config') recursedown('./tests/test_subworkflow_config/expected-results') recursedown('./tests/test_subworkflows') recursedown('./tests/test_subworkflows/expected-results') recursedown('./tests/test_symlink_temp') recursedown('./tests/test_symlink_temp/expected-results') recursedown('./tests/test_symlink_time_handling') recursedown('./tests/test_symlink_time_handling/expected-results') recursedown('./tests/test_temp') recursedown('./tests/test_temp/expected-results') recursedown('./tests/test_temp_expand') recursedown('./tests/test_temp_expand/expected-results') recursedown('./tests/test_template_engine') recursedown('./tests/test_template_engine/expected-results') recursedown('./tests/test_tes') recursedown('./tests/test_tes/expected-results') recursedown('./tests/test_threads') recursedown('./tests/test_threads/expected-results') recursedown('./tests/test_threads0') recursedown('./tests/test_threads0/expected-results') recursedown('./tests/test_tibanna') recursedown('./tests/test_tibanna/expected-results') recursedown('./tests/test_tibanna/scripts') recursedown('./tests/test_tmpdir') recursedown('./tests/test_tmpdir/expected-results') recursedown('./tests/test_touch') recursedown('./tests/test_touch/expected-results') recursedown('./tests/test_touch_pipeline_with_temp_dir') recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results') recursedown('./tests/test_touch_remote_prefix') recursedown('./tests/test_touch_remote_prefix/expected-results') recursedown('./tests/test_touch_with_directories') recursedown('./tests/test_touch_with_directories/expected-results') recursedown('./tests/test_unpack_dict') recursedown('./tests/test_unpack_dict/expected-results') recursedown('./tests/test_unpack_list') recursedown('./tests/test_unpack_list/expected-results') recursedown('./tests/test_until') ./setup.py: no change ./versioneer.py: no change ./.github/workflows/scripts/sacct-proxy.py: updating ./docs/conf.py: updating ./docs/apidocs/conf.py: updating ./examples/hello-world/scripts/plot-hist.py: no change ./snakemake/__init__.py: no change ./snakemake/__main__.py: no change ./snakemake/_version.py: no change ./snakemake/benchmark.py: no change ./snakemake/checkpoints.py: no change ./snakemake/cwl.py: no change ./snakemake/dag.py: no change ./snakemake/decorators.py: no change ./snakemake/exceptions.py: no change ./snakemake/gui.py: no change ./snakemake/interfaces.py: no change ./snakemake/io.py: no change ./snakemake/jobs.py: no change ./snakemake/logging.py: no change 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change ./snakemake/deployment/containerize.py: no change ./snakemake/deployment/env_modules.py: no change ./snakemake/deployment/singularity.py: no change ./snakemake/executors/__init__.py: no change ./snakemake/executors/azure_batch.py: no change ./snakemake/executors/common.py: no change ./snakemake/executors/flux.py: no change ./snakemake/executors/ga4gh_tes.py: no change ./snakemake/executors/google_lifesciences.py: no change ./snakemake/executors/google_lifesciences_helper.py: updating ./snakemake/executors/slurm/__init__.py: no change ./snakemake/executors/slurm/slurm_jobstep.py: no change ./snakemake/executors/slurm/slurm_submit.py: no change ./snakemake/linting/__init__.py: no change ./snakemake/linting/links.py: no change ./snakemake/linting/rules.py: no change ./snakemake/linting/snakefiles.py: no change ./snakemake/remote/AzBlob.py: no change ./snakemake/remote/EGA.py: no change ./snakemake/remote/FTP.py: no change ./snakemake/remote/GS.py: no change 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./snakemake/report/data/timeline.py: no change ./snakemake/report/template/__init__.py: no change ./snakemake/report/template/components/__init__.py: no change ./snakemake/template_rendering/__init__.py: no change ./snakemake/template_rendering/jinja2.py: no change ./snakemake/template_rendering/yte.py: no change ./snakemake/unit_tests/__init__.py: no change ./snakemake/unit_tests/templates/__init__.py: no change ./tests/__init__.py: no change ./tests/common.py: no change ./tests/conftest.py: no change ./tests/test_azure_batch_executor.py: no change ./tests/test_expand.py: no change ./tests/test_google_lifesciences.py: no change ./tests/test_io.py: no change ./tests/test_kubernetes.py: no change ./tests/test_linting.py: no change ./tests/test_persistence.py: no change ./tests/test_schema.py: no change ./tests/test_script.py: no change ./tests/test_slurm.py: no change ./tests/test_tes.py: no change ./tests/test_tibanna.py: no change ./tests/testapi.py: no change ./tests/tests.py: no change ./tests/test14/qsub.py: updating ./tests/test_benchmark/script.py: updating ./tests/test_conda_python_3_7_script/test_script.py: no change ./tests/test_conda_python_script/test_script.py: no change ./tests/test_filegraph/scripts/vis.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_a.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_all.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_b.py: no change ./tests/test_get_log_both/wrapper.py: no change ./tests/test_get_log_complex/wrapper.py: no change ./tests/test_get_log_none/wrapper.py: no change ./tests/test_get_log_stderr/wrapper.py: no change ./tests/test_get_log_stdout/wrapper.py: no change ./tests/test_github_issue1158/qsub.py: updating ./tests/test_github_issue627/job.py: updating ./tests/test_github_issue_14/local_script.py: no change ./tests/test_github_issue_14/pythonTest.py: updating ./tests/test_handover/script.py: no change ./tests/test_issue1046/my_wrapper/wrapper.py: no change ./tests/test_issue916/local_script.py: no change ./tests/test_issue916/pythonTest.py: updating ./tests/test_job_properties/qsub.py: updating ./tests/test_local_import/bar.py: no change ./tests/test_local_import/foo/__init__.py: no change ./tests/test_paramspace/scripts/simulate.py: no change ./tests/test_paramspace_single_wildcard/scripts/simulate.py: no change ./tests/test_prebuilt_conda_script/test.py: no change ./tests/test_prebuilt_conda_script/dummy_package/src/dummy/__init__.py: no change ./tests/test_prebuilt_conda_script/dummy_package/src/dummy/dummy.py: no change ./tests/test_report_display_code/test.py: no change ./tests/test_restartable_job_cmd_exit_1/qsub.py: updating ./tests/test_restartable_job_qsub_exit_1/qsub.py: updating ./tests/test_script/scripts/test.py: no change ./tests/test_script_py/scripts/test.py: no change ./tests/test_singularity/script.py: no change ./tests/test_singularity_module/script.py: no change ./tests/test_static_remote/S3MockedForStaticTest.py: no change ./tests/test_static_remote/__init__.py: no change ./tests/test_string_resources/qsub.py: updating ./tests/test_tibanna/cleanup.py: no change ./tests/test_tibanna/scripts/step2.py: no change recursedown('./tests/test_until/expected-results') recursedown('./tests/test_update_config') recursedown('./tests/test_update_config/expected-results') recursedown('./tests/test_url_include') recursedown('./tests/test_url_include/expected-results') recursedown('./tests/test_use_rule_same_module') recursedown('./tests/test_use_rule_same_module/expected-results') recursedown('./tests/test_validate') recursedown('./tests/test_validate/expected-results') recursedown('./tests/test_wildcard_count_ambiguity') recursedown('./tests/test_wildcard_count_ambiguity/expected-results') recursedown('./tests/test_wildcard_keyword') recursedown('./tests/test_wildcard_keyword/expected-results') recursedown('./tests/test_workflow_profile') recursedown('./tests/test_workflow_profile/dummy-general-profile') recursedown('./tests/test_workflow_profile/expected-results') recursedown('./tests/test_workflow_profile/workflow') recursedown('./tests/test_workflow_profile/workflow/profiles') recursedown('./tests/test_workflow_profile/workflow/profiles/default') recursedown('./tests/test_wrapper') recursedown('./tests/test_wrapper/expected-results') recursedown('./tests/test_xrootd') recursedown('./tests/test_yaml_config') recursedown('./tests/test_yaml_config/expected-results') + sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py + sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py + sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt + echo 'latex_engine = '\''xelatex'\''' + for editor in nano vim + cp -vp misc/nano/README.md README-nano.md 'misc/nano/README.md' -> 'README-nano.md' + for editor in nano vim + cp -vp misc/vim/README.md README-vim.md 'misc/vim/README.md' -> 'README-vim.md' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.6hTDWt + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.aarch64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement not satisfied: sphinx-argparse Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement not satisfied: sphinx_rtd_theme Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement not satisfied: myst-parser Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement not satisfied: appdirs Exiting dependency generation pass: all requirements files + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.aarch64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 67 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 175 kB/s | 3.8 kB 00:00 fedora 48 kB/s | 14 kB 00:00 updates 45 kB/s | 12 kB 00:00 Package librsvg2-tools-2.57.1-1.fc40.aarch64 is already installed. Package texlive-xindy-11:svn65958-77.fc39.aarch64 is already installed. Package help2man-1.49.3-3.fc39.noarch is already installed. Package latexmk-4.82-1.fc40.noarch is already installed. Package make-1:4.4.1-2.fc39.aarch64 is already installed. Package pyproject-rpm-macros-1.11.0-1.fc40.noarch is already installed. Package python3-devel-3.12.1-2.fc40.aarch64 is already installed. Package python3-devel-3.12.1-2.fc40.aarch64 is already installed. Package python3-sphinx-latex-1:7.2.6-4.fc40.noarch is already installed. Package python3-boto3-1.34.12-1.fc40.noarch is already installed. Package python3-configargparse-1.7-1.fc40.noarch is already installed. Package python3-configargparse-1.7-1.fc40.noarch is already installed. Package python3-docutils-0.20.1-1.fc40.noarch is already installed. Package python3-packaging-23.2-2.fc40.noarch is already installed. Package python3-pandas-1.5.3-7.fc39~bootstrap.aarch64 is already installed. Package python3-pytest-7.4.3-1.fc40.noarch is already installed. Package python3-requests-mock-1.10.0-5.fc39.noarch is already installed. Package python3-sphinx-1:7.2.6-4.fc40.noarch is already installed. Package texlive-xetex-11:svn66203-77.fc39.aarch64 is already installed. Package vim-filesystem-2:9.0.2190-1.fc40.noarch is already installed. Dependencies resolved. ============================================================================================================================================ Package Arch Version Repository Size ============================================================================================================================================ Installing: python3-appdirs noarch 1.4.4-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 23 k python3-myst-parser noarch 2.0.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 185 k python3-pip noarch 23.3.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.9 M python3-sphinx-argparse noarch 0.4.0-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k python3-sphinx_rtd_theme noarch 2.0.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 74 k Installing dependencies: fontawesome4-fonts noarch 1:4.7.0-19.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 204 k google-roboto-slab-fonts noarch 1.100263-0.21.20150923git.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 239 k lato-fonts noarch 2.015-17.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.1 M libyaml aarch64 0.2.5-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 59 k python3-markdown-it-py noarch 3.0.0-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 165 k python3-mdit-py-plugins noarch 0.4.0-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101 k python3-mdurl noarch 0.1.2-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 26 k python3-pyyaml aarch64 6.0.1-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 211 k python3-sphinxcontrib-jquery noarch 4.1-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113 k Transaction Summary ============================================================================================================================================ Install 14 Packages Total download size: 7.4 M Installed size: 30 M Downloading Packages: (1/14): fontawesome4-fonts-4.7.0-19.fc40.noarch 6.8 MB/s | 204 kB 00:00 (2/14): google-roboto-slab-fonts-1.100263-0.21. 7.8 MB/s | 239 kB 00:00 (3/14): python3-appdirs-1.4.4-11.fc39.noarch.rp 6.2 MB/s | 23 kB 00:00 (4/14): libyaml-0.2.5-12.fc39.aarch64.rpm 11 MB/s | 59 kB 00:00 (5/14): python3-markdown-it-py-3.0.0-2.fc39.noa 34 MB/s | 165 kB 00:00 (6/14): python3-mdit-py-plugins-0.4.0-2.fc39.no 25 MB/s | 101 kB 00:00 (7/14): lato-fonts-2.015-17.fc39.noarch.rpm 68 MB/s | 3.1 MB 00:00 (8/14): python3-mdurl-0.1.2-4.fc39.noarch.rpm 4.5 MB/s | 26 kB 00:00 (9/14): python3-myst-parser-2.0.0-3.fc40.noarch 29 MB/s | 185 kB 00:00 (10/14): python3-pyyaml-6.0.1-11.fc39.aarch64.r 30 MB/s | 211 kB 00:00 (11/14): python3-sphinx-argparse-0.4.0-4.fc39.n 5.7 MB/s | 39 kB 00:00 (12/14): python3-pip-23.3.1-2.fc40.noarch.rpm 166 MB/s | 2.9 MB 00:00 (13/14): python3-sphinx_rtd_theme-2.0.0-1.fc40. 9.4 MB/s | 74 kB 00:00 (14/14): python3-sphinxcontrib-jquery-4.1-5.fc4 14 MB/s | 113 kB 00:00 -------------------------------------------------------------------------------- Total 110 MB/s | 7.4 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-sphinxcontrib-jquery-4.1-5.fc40.noarch 1/14 Installing : python3-mdurl-0.1.2-4.fc39.noarch 2/14 Installing : python3-markdown-it-py-3.0.0-2.fc39.noarch 3/14 Installing : python3-mdit-py-plugins-0.4.0-2.fc39.noarch 4/14 Installing : libyaml-0.2.5-12.fc39.aarch64 5/14 Installing : python3-pyyaml-6.0.1-11.fc39.aarch64 6/14 Installing : lato-fonts-2.015-17.fc39.noarch 7/14 Installing : google-roboto-slab-fonts-1.100263-0.21.20150923git 8/14 Installing : fontawesome4-fonts-1:4.7.0-19.fc40.noarch 9/14 Installing : python3-sphinx_rtd_theme-2.0.0-1.fc40.noarch 10/14 Installing : python3-myst-parser-2.0.0-3.fc40.noarch 11/14 Installing : python3-sphinx-argparse-0.4.0-4.fc39.noarch 12/14 Installing : python3-pip-23.3.1-2.fc40.noarch 13/14 Installing : python3-appdirs-1.4.4-11.fc39.noarch 14/14 Running scriptlet: python3-appdirs-1.4.4-11.fc39.noarch 14/14 Installed: fontawesome4-fonts-1:4.7.0-19.fc40.noarch google-roboto-slab-fonts-1.100263-0.21.20150923git.fc39.noarch lato-fonts-2.015-17.fc39.noarch libyaml-0.2.5-12.fc39.aarch64 python3-appdirs-1.4.4-11.fc39.noarch python3-markdown-it-py-3.0.0-2.fc39.noarch python3-mdit-py-plugins-0.4.0-2.fc39.noarch python3-mdurl-0.1.2-4.fc39.noarch python3-myst-parser-2.0.0-3.fc40.noarch python3-pip-23.3.1-2.fc40.noarch python3-pyyaml-6.0.1-11.fc39.aarch64 python3-sphinx-argparse-0.4.0-4.fc39.noarch python3-sphinx_rtd_theme-2.0.0-1.fc40.noarch python3-sphinxcontrib-jquery-4.1-5.fc40.noarch Complete! Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1704412800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.UcWq25 + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.aarch64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement satisfied: sphinx-argparse (installed: sphinx-argparse 0.4.0) Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement satisfied: sphinx_rtd_theme (installed: sphinx_rtd_theme 2.0.0) Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement satisfied: myst-parser (installed: myst-parser 2.0.0) Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info creating snakemake.egg-info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt writing manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement not satisfied: wheel Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.aarch64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 62 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 174 kB/s | 3.8 kB 00:00 fedora 56 kB/s | 14 kB 00:00 updates 138 kB/s | 12 kB 00:00 Package librsvg2-tools-2.57.1-1.fc40.aarch64 is already installed. Package texlive-xindy-11:svn65958-77.fc39.aarch64 is already installed. Package help2man-1.49.3-3.fc39.noarch is already installed. Package latexmk-4.82-1.fc40.noarch is already installed. Package make-1:4.4.1-2.fc39.aarch64 is already installed. Package pyproject-rpm-macros-1.11.0-1.fc40.noarch is already installed. Package python3-devel-3.12.1-2.fc40.aarch64 is already installed. Package python3-devel-3.12.1-2.fc40.aarch64 is already installed. Package python3-sphinx-latex-1:7.2.6-4.fc40.noarch is already installed. Package python3-appdirs-1.4.4-11.fc39.noarch is already installed. Package python3-boto3-1.34.12-1.fc40.noarch is already installed. Package python3-configargparse-1.7-1.fc40.noarch is already installed. Package python3-configargparse-1.7-1.fc40.noarch is already installed. Package python3-docutils-0.20.1-1.fc40.noarch is already installed. Package python3-myst-parser-2.0.0-3.fc40.noarch is already installed. Package python3-packaging-23.2-2.fc40.noarch is already installed. Package python3-pandas-1.5.3-7.fc39~bootstrap.aarch64 is already installed. Package python3-pip-23.3.1-2.fc40.noarch is already installed. Package python3-pytest-7.4.3-1.fc40.noarch is already installed. Package python3-requests-mock-1.10.0-5.fc39.noarch is already installed. Package python3-setuptools-68.2.2-1.fc40.noarch is already installed. Package python3-sphinx-1:7.2.6-4.fc40.noarch is already installed. Package python3-sphinx-argparse-0.4.0-4.fc39.noarch is already installed. Package python3-sphinx_rtd_theme-2.0.0-1.fc40.noarch is already installed. Package texlive-xetex-11:svn66203-77.fc39.aarch64 is already installed. Package vim-filesystem-2:9.0.2190-1.fc40.noarch is already installed. Dependencies resolved. ============================================================================================================= Package Arch Version Repository Size ============================================================================================================= Installing: python3-wheel noarch 1:0.41.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 148 k Transaction Summary ============================================================================================================= Install 1 Package Total download size: 148 k Installed size: 507 k Downloading Packages: python3-wheel-0.41.2-1.fc40.noarch.rpm 5.8 MB/s | 148 kB 00:00 -------------------------------------------------------------------------------- Total 5.5 MB/s | 148 kB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-wheel-1:0.41.2-1.fc40.noarch 1/1 Running scriptlet: python3-wheel-1:0.41.2-1.fc40.noarch 1/1 Installed: python3-wheel-1:0.41.2-1.fc40.noarch Complete! Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1704412800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.G4KJ9G + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.aarch64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement satisfied: sphinx-argparse (installed: sphinx-argparse 0.4.0) Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement satisfied: sphinx_rtd_theme (installed: sphinx_rtd_theme 2.0.0) Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement satisfied: myst-parser (installed: myst-parser 2.0.0) Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-7.32.4/snakemake-7.32.4.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: connection-pool >=0.0.3 Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: datrie Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: gitpython Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: humanfriendly Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.2) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: jsonschema Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: nbformat Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: psutil Handling pulp >=2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pulp >=2.0 Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests (installed: requests 2.28.2) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: reretry Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: smart-open >=3.0 Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: stopit Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: tabulate Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: throttler Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: toposort >=1.10 Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: wrapt Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: yte <2.0,>=1.5.1 Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-storage-blob ; extra == 'azure' Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-batch ; extra == 'azure' Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-core ; extra == 'azure' Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-identity ; extra == 'azure' Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-mgmt-batch ; extra == 'azure' Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: google-api-python-client ; extra == 'google-cloud' Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: google-cloud-storage ; extra == 'google-cloud' Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: google-crc32c ; extra == 'google-cloud' Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: oauth2client ; extra == 'google-cloud' Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: slacker ; extra == 'messaging' Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.aarch64-pyproject-buildrequires + rm -rfv snakemake-7.32.4.dist-info/ removed 'snakemake-7.32.4.dist-info/AUTHORS.rst' removed 'snakemake-7.32.4.dist-info/LICENSE.md' removed 'snakemake-7.32.4.dist-info/METADATA' removed 'snakemake-7.32.4.dist-info/entry_points.txt' removed 'snakemake-7.32.4.dist-info/top_level.txt' removed directory 'snakemake-7.32.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 81 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 173 kB/s | 3.8 kB 00:00 fedora 56 kB/s | 14 kB 00:00 updates 136 kB/s | 12 kB 00:00 Package python3-jinja2-3.1.2-6.fc40.noarch is already installed. Package librsvg2-tools-2.57.1-1.fc40.aarch64 is already installed. Package texlive-xindy-11:svn65958-77.fc39.aarch64 is already installed. Package help2man-1.49.3-3.fc39.noarch is already installed. Package latexmk-4.82-1.fc40.noarch is already installed. Package make-1:4.4.1-2.fc39.aarch64 is already installed. Package pyproject-rpm-macros-1.11.0-1.fc40.noarch is already installed. Package python3-devel-3.12.1-2.fc40.aarch64 is already installed. Package python3-devel-3.12.1-2.fc40.aarch64 is already installed. Package python3-sphinx-latex-1:7.2.6-4.fc40.noarch is already installed. Package python3-appdirs-1.4.4-11.fc39.noarch is already installed. Package python3-boto3-1.34.12-1.fc40.noarch is already installed. Package python3-configargparse-1.7-1.fc40.noarch is already installed. Package python3-configargparse-1.7-1.fc40.noarch is already installed. Package python3-docutils-0.20.1-1.fc40.noarch is already installed. Package python3-myst-parser-2.0.0-3.fc40.noarch is already installed. Package python3-packaging-23.2-2.fc40.noarch is already installed. Package python3-pandas-1.5.3-7.fc39~bootstrap.aarch64 is already installed. Package python3-pip-23.3.1-2.fc40.noarch is already installed. Package python3-pygments-2.17.2-1.fc40.noarch is already installed. Package python3-pytest-7.4.3-1.fc40.noarch is already installed. Package python3-pyyaml-6.0.1-11.fc39.aarch64 is already installed. Package python3-requests-2.28.2-7.fc40.noarch is already installed. Package python3-requests-mock-1.10.0-5.fc39.noarch is already installed. Package python3-setuptools-68.2.2-1.fc40.noarch is already installed. Package python3-sphinx-1:7.2.6-4.fc40.noarch is already installed. Package python3-sphinx-argparse-0.4.0-4.fc39.noarch is already installed. Package python3-sphinx_rtd_theme-2.0.0-1.fc40.noarch is already installed. Package python3-wheel-1:0.41.2-1.fc40.noarch is already installed. Package texlive-xetex-11:svn66203-77.fc39.aarch64 is already installed. Package vim-filesystem-2:9.0.2190-1.fc40.noarch is already installed. Dependencies resolved. ================================================================================================================================================== Package Arch Version Repository Size ================================================================================================================================================== Installing: python3-GitPython noarch 3.1.40-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 361 k python3-azure-batch noarch 14.0.0-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 207 k python3-azure-core noarch 2:1.28.0-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 260 k python3-azure-identity noarch 1:1.14.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 199 k python3-azure-mgmt-batch noarch 17.0.0-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 194 k python3-azure-storage-blob noarch 12.14.1-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 509 k python3-connection_pool noarch 0.0.3-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17 k python3-datrie aarch64 0.8.2-22.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149 k python3-google-api-client noarch 2:2.112.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.7 M python3-google-cloud-storage noarch 2.14.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 189 k python3-google-crc32c aarch64 1.1.2-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 32 k python3-humanfriendly noarch 10.0-8.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 131 k python3-jsonschema noarch 4.19.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 186 k python3-nbformat noarch 5.9.1-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 120 k python3-oauth2client noarch 4.1.3-23.fc39 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1.6 M python3-cachetools noarch 5.3.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k python3-certifi noarch 2023.05.07-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14 k python3-cffi aarch64 1.16.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 301 k python3-cryptography aarch64 41.0.5-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M python3-dpath noarch 2.1.4-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k python3-fasteners noarch 0.19-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44 k python3-fastjsonschema noarch 2.18.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 56 k python3-gitdb noarch 4.0.10-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 128 k python3-google-api-core noarch 1:2.11.1-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 177 k python3-google-auth noarch 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 29 k re2 aarch64 1:20220601-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 187 k Transaction Summary ================================================================================================================================================== Install 90 Packages Total download size: 26 M Installed size: 207 M Downloading Packages: (1/90): c-ares-1.22.1-1.fc40.aarch64.rpm 4.5 MB/s | 140 kB 00:00 (2/90): abseil-cpp-20230802.1-2.fc40.aarch64.rp 20 MB/s | 664 kB 00:00 (3/90): grpc-data-1.48.4-30.fc40.noarch.rpm 7.0 MB/s | 23 kB 00:00 (4/90): google-crc32c-1.1.2-7.fc39.aarch64.rpm 3.7 MB/s | 22 kB 00:00 (5/90): libcbor-0.10.2-3.fc40.aarch64.rpm 6.0 MB/s | 32 kB 00:00 (6/90): less-643-1.fc40.aarch64.rpm 21 MB/s | 177 kB 00:00 (7/90): libfido2-1.14.0-1.fc40.aarch64.rpm 18 MB/s | 96 kB 00:00 (8/90): libedit-3.1-48.20230828cvs.fc40.aarch64 14 MB/s | 107 kB 00:00 (9/90): git-core-2.43.0-1.fc40.aarch64.rpm 80 MB/s | 4.6 MB 00:00 (10/90): openssh-9.3p1-13.fc40.1.aarch64.rpm 59 MB/s | 426 kB 00:00 (11/90): python3-GitPython-3.1.40-1.fc40.noarch 79 MB/s | 361 kB 00:00 (12/90): openssh-clients-9.3p1-13.fc40.1.aarch6 49 MB/s | 723 kB 00:00 (13/90): protobuf-3.19.6-6.fc39.aarch64.rpm 85 MB/s | 923 kB 00:00 (14/90): python3-adal-1.2.7-13.fc39.noarch.rpm 19 MB/s | 93 kB 00:00 (15/90): python3-attrs-23.1.0-4.fc39.noarch.rpm 26 MB/s | 110 kB 00:00 (16/90): python3-azure-common-1.1.28-6.fc39.noa 8.6 MB/s | 33 kB 00:00 (17/90): python3-azure-batch-14.0.0-1.fc39.noar 40 MB/s | 207 kB 00:00 (18/90): python3-azure-mgmt-batch-17.0.0-5.fc39 38 MB/s | 194 kB 00:00 (19/90): python3-azure-core-1.28.0-3.fc39.noarc 30 MB/s | 260 kB 00:00 (20/90): python3-azure-identity-1.14.0-1.fc40.n 26 MB/s | 199 kB 00:00 (21/90): python3-azure-mgmt-core-1.3.2-9.fc39.n 11 MB/s | 39 kB 00:00 (22/90): python3-azure-storage-blob-12.14.1-4.f 72 MB/s | 509 kB 00:00 (23/90): python3-boto-2.49.0-18.fc39.noarch.rpm 148 MB/s | 1.6 MB 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(38/90): python3-google-cloud-core-2.3.3-2.fc39 8.3 MB/s | 63 kB 00:00 (39/90): python3-google-cloud-storage-2.14.0-2. 45 MB/s | 189 kB 00:00 (40/90): python3-google-crc32c-1.1.2-9.fc39.aar 7.1 MB/s | 32 kB 00:00 (41/90): python3-google-resumable-media-2.6.0-1 23 MB/s | 88 kB 00:00 (42/90): python3-googleapis-common-protos-1.62. 48 MB/s | 182 kB 00:00 (43/90): python3-grpcio-status-1.48.4-30.fc40.n 7.0 MB/s | 22 kB 00:00 (44/90): python3-httplib2-0.21.0-4.fc39.noarch. 20 MB/s | 134 kB 00:00 (45/90): python3-humanfriendly-10.0-8.fc39.noar 24 MB/s | 131 kB 00:00 (46/90): python3-grpcio-1.48.4-30.fc40.aarch64. 145 MB/s | 2.2 MB 00:00 (47/90): python3-jsonschema-4.19.1-1.fc40.noarc 39 MB/s | 186 kB 00:00 (48/90): python3-isodate-0.6.1-9.fc39.noarch.rp 10 MB/s | 67 kB 00:00 (49/90): python3-jsonschema-specifications-2023 6.6 MB/s | 21 kB 00:00 (50/90): python3-jupyter-core-5.1.0-5.fc39.noar 37 MB/s | 125 kB 00:00 (51/90): python3-jwt+crypto-2.6.0-4.fc39.noarch 3.0 MB/s | 8.9 kB 00:00 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Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-pyasn1-0.5.1-1.fc40.noarch 1/90 Installing : python3-rsa-4.9-3.fc39.noarch 2/90 Installing : python3-pyasn1-modules-0.5.1-1.fc40.noarch 3/90 Installing : python3-traitlets-5.11.2-1.fc40.noarch 4/90 Installing : python3-rpds-py-0.16.2-1.fc40.aarch64 5/90 Installing : python3-azure-common-1:1.1.28-6.fc39.noarch 6/90 Installing : python3-attrs-23.1.0-4.fc39.noarch 7/90 Installing : python3-referencing-0.31.1-1.fc40.noarch 8/90 Installing : python3-jsonschema-specifications-2023.11.2-1.fc40 9/90 Installing : python3-jsonschema-4.19.1-1.fc40.noarch 10/90 Installing : re2-1:20220601-3.fc39.aarch64 11/90 Installing : python3-zombie-imp-0.0.2-3.fc40.noarch 12/90 Installing : python3-boto-2.49.0-18.fc39.noarch 13/90 Installing : python3-uritemplate-4.1.1-6.fc39.noarch 14/90 Installing : python3-typing-extensions-4.9.0-1.fc40.noarch 15/90 Installing : python3-azure-core-2:1.28.0-3.fc39.noarch 16/90 Installing : 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python3-google-cloud-core-2.3.3-2.fc39.noarch 67/90 Installing : python3-google-cloud-storage-2.14.0-2.fc40.noarch 68/90 Installing : python3-google-api-client-2:2.112.0-1.fc40.noarch 69/90 Installing : python3-GitPython-3.1.40-1.fc40.noarch 70/90 Installing : python3-azure-batch-14.0.0-1.fc39.noarch 71/90 Installing : python3-azure-mgmt-batch-17.0.0-5.fc39.noarch 72/90 Installing : python3-azure-storage-blob-12.14.1-4.fc39.noarch 73/90 Installing : python3-yte-1.5.4-1.fc40.noarch 74/90 Installing : python3-oauth2client-4.1.3-23.fc39.noarch 75/90 Installing : python3-nbformat-5.9.1-2.fc39.noarch 76/90 Installing : python3-azure-identity-1:1.14.0-1.fc40.noarch 77/90 Installing : python3-smart_open-6.4.0-1.fc40.noarch 78/90 Installing : python3-wrapt-1.16.0-1.fc40.aarch64 79/90 Installing : python3-toposort-1.10-8.fc40.noarch 80/90 Installing : python3-throttler-1.2.2-7.fc40.noarch 81/90 Installing : python3-tabulate-0.9.0-4.fc39.noarch 82/90 Installing : python3-stopit-1.1.2-8.fc39.noarch 83/90 Installing : python3-slacker-0.14.0-12.fc39.noarch 84/90 Installing : python3-reretry-0.11.8-6.fc40.noarch 85/90 Installing : python3-pulp-2.7.0-3.fc39.noarch 86/90 Installing : python3-psutil-5.9.5-2.fc40.aarch64 87/90 Installing : python3-humanfriendly-10.0-8.fc39.noarch 88/90 Installing : python3-datrie-0.8.2-22.fc40.aarch64 89/90 Installing : python3-connection_pool-0.0.3-9.fc39.noarch 90/90 Running scriptlet: python3-connection_pool-0.0.3-9.fc39.noarch 90/90 Installed: abseil-cpp-20230802.1-2.fc40.aarch64 c-ares-1.22.1-1.fc40.aarch64 git-core-2.43.0-1.fc40.aarch64 google-crc32c-1.1.2-7.fc39.aarch64 grpc-data-1.48.4-30.fc40.noarch less-643-1.fc40.aarch64 libcbor-0.10.2-3.fc40.aarch64 libedit-3.1-48.20230828cvs.fc40.aarch64 libfido2-1.14.0-1.fc40.aarch64 openssh-9.3p1-13.fc40.1.aarch64 openssh-clients-9.3p1-13.fc40.1.aarch64 protobuf-3.19.6-6.fc39.aarch64 python3-GitPython-3.1.40-1.fc40.noarch python3-adal-1.2.7-13.fc39.noarch python3-attrs-23.1.0-4.fc39.noarch python3-azure-batch-14.0.0-1.fc39.noarch python3-azure-common-1:1.1.28-6.fc39.noarch python3-azure-core-2:1.28.0-3.fc39.noarch python3-azure-identity-1:1.14.0-1.fc40.noarch python3-azure-mgmt-batch-17.0.0-5.fc39.noarch python3-azure-mgmt-core-1:1.3.2-9.fc39.noarch python3-azure-storage-blob-12.14.1-4.fc39.noarch python3-boto-2.49.0-18.fc39.noarch python3-cachetools-5.3.2-1.fc40.noarch python3-certifi-2023.05.07-2.fc39.noarch python3-cffi-1.16.0-1.fc40.aarch64 python3-connection_pool-0.0.3-9.fc39.noarch python3-cryptography-41.0.5-2.fc40.aarch64 python3-datrie-0.8.2-22.fc40.aarch64 python3-dpath-2.1.4-3.fc39.noarch python3-fasteners-0.19-2.fc40.noarch python3-fastjsonschema-2.18.0-1.fc40.noarch python3-gitdb-4.0.10-3.fc39.noarch python3-google-api-client-2:2.112.0-1.fc40.noarch python3-google-api-core-1:2.11.1-5.fc39.noarch python3-google-auth-1:2.26.0-1.fc40.noarch python3-google-auth-httplib2-0.2.0-1.fc40.noarch python3-google-cloud-core-2.3.3-2.fc39.noarch python3-google-cloud-storage-2.14.0-2.fc40.noarch python3-google-crc32c-1.1.2-9.fc39.aarch64 python3-google-resumable-media-2.6.0-1.fc40.noarch python3-googleapis-common-protos-1.62.0-7.fc40.noarch python3-grpcio-1.48.4-30.fc40.aarch64 python3-grpcio-status-1.48.4-30.fc40.noarch python3-httplib2-0.21.0-4.fc39.noarch python3-humanfriendly-10.0-8.fc39.noarch python3-isodate-0.6.1-9.fc39.noarch python3-jsonschema-4.19.1-1.fc40.noarch python3-jsonschema-specifications-2023.11.2-1.fc40.noarch python3-jupyter-core-5.1.0-5.fc39.noarch python3-jwt-2.6.0-4.fc39.noarch python3-jwt+crypto-2.6.0-4.fc39.noarch python3-msal-1.26.0-2.fc40.noarch python3-msal-extensions-1.0.0-7.fc39.noarch python3-msrest-0.7.1-8.20221014git2d8fd04.fc39.noarch python3-msrestazure-0.6.4-18.fc39.noarch python3-nbformat-5.9.1-2.fc39.noarch python3-oauth2client-4.1.3-23.fc39.noarch python3-oauthlib-3.2.2-1.fc40.noarch python3-plac-1.4.2-3.fc40.noarch python3-platformdirs-3.11.0-1.fc40.noarch python3-ply-3.11-20.fc39.noarch python3-portalocker-2.8.2-2.fc40.noarch python3-protobuf-3.19.6-6.fc39.aarch64 python3-psutil-5.9.5-2.fc40.aarch64 python3-pulp-2.7.0-3.fc39.noarch python3-pyOpenSSL-23.2.0-1.fc40.noarch python3-pyasn1-0.5.1-1.fc40.noarch python3-pyasn1-modules-0.5.1-1.fc40.noarch python3-pycparser-2.20-12.fc40.noarch python3-pyparsing-3.1.1-1.fc40.noarch python3-referencing-0.31.1-1.fc40.noarch python3-requests-oauthlib-1.3.1-6.fc39.noarch python3-reretry-0.11.8-6.fc40.noarch python3-rpds-py-0.16.2-1.fc40.aarch64 python3-rsa-4.9-3.fc39.noarch python3-slacker-0.14.0-12.fc39.noarch python3-smart_open-6.4.0-1.fc40.noarch python3-smmap-5.0.0-6.fc39.noarch python3-stopit-1.1.2-8.fc39.noarch python3-tabulate-0.9.0-4.fc39.noarch python3-throttler-1.2.2-7.fc40.noarch python3-toposort-1.10-8.fc40.noarch python3-traitlets-5.11.2-1.fc40.noarch python3-typing-extensions-4.9.0-1.fc40.noarch python3-uritemplate-4.1.1-6.fc39.noarch python3-wrapt-1.16.0-1.fc40.aarch64 python3-yte-1.5.4-1.fc40.noarch python3-zombie-imp-0.0.2-3.fc40.noarch re2-1:20220601-3.fc39.aarch64 Complete! Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1704412800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.l9GKCo + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.aarch64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement satisfied: sphinx-argparse (installed: sphinx-argparse 0.4.0) Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement satisfied: sphinx_rtd_theme (installed: sphinx_rtd_theme 2.0.0) Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement satisfied: myst-parser (installed: myst-parser 2.0.0) Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-7.32.4/snakemake-7.32.4.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.2) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.1) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.5) Handling pulp >=2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp >=2.0 (installed: pulp 2.7.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests (installed: requests 2.28.2) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open >=3.0 (installed: smart-open 6.4.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort >=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.4) Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-storage-blob ; extra == 'azure' (installed: azure-storage-blob 12.14.1) Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-batch ; extra == 'azure' (installed: azure-batch 14.0.0) Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-core ; extra == 'azure' (installed: azure-core 1.28.0) Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-identity ; extra == 'azure' (installed: azure-identity 1.14.0) Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-mgmt-batch ; extra == 'azure' (installed: azure-mgmt-batch 17.0.0) Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-api-python-client ; extra == 'google-cloud' (installed: google-api-python-client 2.112.0) Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-cloud-storage ; extra == 'google-cloud' (installed: google-cloud-storage 2.14.0) Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-crc32c ; extra == 'google-cloud' (installed: google-crc32c 1.1.2) Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: oauth2client ; extra == 'google-cloud' (installed: oauth2client 4.1.3) Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slacker ; extra == 'messaging' (installed: slacker 0.14.0) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.aarch64-pyproject-buildrequires + rm -rfv snakemake-7.32.4.dist-info/ removed 'snakemake-7.32.4.dist-info/AUTHORS.rst' removed 'snakemake-7.32.4.dist-info/LICENSE.md' removed 'snakemake-7.32.4.dist-info/METADATA' removed 'snakemake-7.32.4.dist-info/top_level.txt' removed 'snakemake-7.32.4.dist-info/entry_points.txt' removed directory 'snakemake-7.32.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 83 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 176 kB/s | 3.8 kB 00:00 fedora 126 kB/s | 14 kB 00:00 updates 419 kB/s | 12 kB 00:00 Package python3-jinja2-3.1.2-6.fc40.noarch is already installed. Package python3-yte-1.5.4-1.fc40.noarch is already installed. Package librsvg2-tools-2.57.1-1.fc40.aarch64 is already installed. Package texlive-xindy-11:svn65958-77.fc39.aarch64 is already installed. Package help2man-1.49.3-3.fc39.noarch is already installed. Package latexmk-4.82-1.fc40.noarch is already installed. Package make-1:4.4.1-2.fc39.aarch64 is already installed. Package pyproject-rpm-macros-1.11.0-1.fc40.noarch is already installed. Package python3-devel-3.12.1-2.fc40.aarch64 is already installed. Package python3-devel-3.12.1-2.fc40.aarch64 is already installed. Package python3-sphinx-latex-1:7.2.6-4.fc40.noarch is already installed. Package python3-appdirs-1.4.4-11.fc39.noarch is already installed. Package python3-azure-batch-14.0.0-1.fc39.noarch is already installed. Package python3-azure-core-2:1.28.0-3.fc39.noarch is already installed. Package python3-azure-identity-1:1.14.0-1.fc40.noarch is already installed. Package python3-azure-mgmt-batch-17.0.0-5.fc39.noarch is already installed. Package python3-azure-storage-blob-12.14.1-4.fc39.noarch is already installed. Package python3-boto3-1.34.12-1.fc40.noarch is already installed. Package python3-configargparse-1.7-1.fc40.noarch is already installed. Package python3-configargparse-1.7-1.fc40.noarch is already installed. Package python3-connection_pool-0.0.3-9.fc39.noarch is already installed. Package python3-datrie-0.8.2-22.fc40.aarch64 is already installed. Package python3-docutils-0.20.1-1.fc40.noarch is already installed. Package python3-GitPython-3.1.40-1.fc40.noarch is already installed. Package python3-google-api-client-2:2.112.0-1.fc40.noarch is already installed. Package python3-google-cloud-storage-2.14.0-2.fc40.noarch is already installed. Package python3-google-crc32c-1.1.2-9.fc39.aarch64 is already installed. Package python3-humanfriendly-10.0-8.fc39.noarch is already installed. Package python3-jsonschema-4.19.1-1.fc40.noarch is already installed. Package python3-myst-parser-2.0.0-3.fc40.noarch is already installed. Package python3-nbformat-5.9.1-2.fc39.noarch is already installed. Package python3-oauth2client-4.1.3-23.fc39.noarch is already installed. Package python3-packaging-23.2-2.fc40.noarch is already installed. Package python3-pandas-1.5.3-7.fc39~bootstrap.aarch64 is already installed. Package python3-pip-23.3.1-2.fc40.noarch is already installed. Package python3-psutil-5.9.5-2.fc40.aarch64 is already installed. Package python3-pulp-2.7.0-3.fc39.noarch is already installed. Package python3-pygments-2.17.2-1.fc40.noarch is already installed. Package python3-pytest-7.4.3-1.fc40.noarch is already installed. Package python3-pyyaml-6.0.1-11.fc39.aarch64 is already installed. Package python3-requests-2.28.2-7.fc40.noarch is already installed. Package python3-requests-mock-1.10.0-5.fc39.noarch is already installed. Package python3-reretry-0.11.8-6.fc40.noarch is already installed. Package python3-setuptools-68.2.2-1.fc40.noarch is already installed. Package python3-slacker-0.14.0-12.fc39.noarch is already installed. Package python3-smart_open-6.4.0-1.fc40.noarch is already installed. Package python3-sphinx-1:7.2.6-4.fc40.noarch is already installed. Package python3-sphinx-argparse-0.4.0-4.fc39.noarch is already installed. Package python3-sphinx_rtd_theme-2.0.0-1.fc40.noarch is already installed. Package python3-stopit-1.1.2-8.fc39.noarch is already installed. Package python3-tabulate-0.9.0-4.fc39.noarch is already installed. Package python3-throttler-1.2.2-7.fc40.noarch is already installed. Package python3-toposort-1.10-8.fc40.noarch is already installed. Package python3-wheel-1:0.41.2-1.fc40.noarch is already installed. Package python3-wrapt-1.16.0-1.fc40.aarch64 is already installed. Package texlive-xetex-11:svn66203-77.fc39.aarch64 is already installed. Package vim-filesystem-2:9.0.2190-1.fc40.noarch is already installed. Dependencies resolved. Nothing to do. Complete! Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1704412800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.ZEAzc7 + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.aarch64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement satisfied: sphinx-argparse (installed: sphinx-argparse 0.4.0) Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement satisfied: sphinx_rtd_theme (installed: sphinx_rtd_theme 2.0.0) Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement satisfied: myst-parser (installed: myst-parser 2.0.0) Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-7.32.4/snakemake-7.32.4.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.2) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.1) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.5) Handling pulp >=2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp >=2.0 (installed: pulp 2.7.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests (installed: requests 2.28.2) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open >=3.0 (installed: smart-open 6.4.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort >=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.4) Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-storage-blob ; extra == 'azure' (installed: azure-storage-blob 12.14.1) Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-batch ; extra == 'azure' (installed: azure-batch 14.0.0) Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-core ; extra == 'azure' (installed: azure-core 1.28.0) Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-identity ; extra == 'azure' (installed: azure-identity 1.14.0) Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-mgmt-batch ; extra == 'azure' (installed: azure-mgmt-batch 17.0.0) Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-api-python-client ; extra == 'google-cloud' (installed: google-api-python-client 2.112.0) Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-cloud-storage ; extra == 'google-cloud' (installed: google-cloud-storage 2.14.0) Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-crc32c ; extra == 'google-cloud' (installed: google-crc32c 1.1.2) Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: oauth2client ; extra == 'google-cloud' (installed: oauth2client 4.1.3) Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slacker ; extra == 'messaging' (installed: slacker 0.14.0) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.aarch64-pyproject-buildrequires + rm -rfv snakemake-7.32.4.dist-info/ removed 'snakemake-7.32.4.dist-info/AUTHORS.rst' removed 'snakemake-7.32.4.dist-info/LICENSE.md' removed 'snakemake-7.32.4.dist-info/METADATA' removed 'snakemake-7.32.4.dist-info/entry_points.txt' removed 'snakemake-7.32.4.dist-info/top_level.txt' removed directory 'snakemake-7.32.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.VcMslI + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-7.32.4 + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir Processing /builddir/build/BUILD/snakemake-7.32.4 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-z1437490/snakemake.egg-info writing /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-z1437490/snakemake.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-z1437490/snakemake.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-z1437490/snakemake.egg-info/entry_points.txt writing requirements to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-z1437490/snakemake.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-z1437490/snakemake.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-z1437490/snakemake.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-z1437490/snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-z1437490/snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-z1437490/snakemake-7.32.4.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: snakemake Building wheel for snakemake (pyproject.toml): started Running command Building wheel for snakemake (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/snakemake copying snakemake/wrapper.py -> build/lib/snakemake copying snakemake/workflow.py -> build/lib/snakemake copying snakemake/utils.py -> build/lib/snakemake copying snakemake/target_jobs.py -> build/lib/snakemake copying snakemake/stats.py -> build/lib/snakemake copying snakemake/sourcecache.py -> build/lib/snakemake copying snakemake/shell.py -> build/lib/snakemake copying snakemake/script.py -> build/lib/snakemake copying snakemake/scheduler.py -> build/lib/snakemake copying snakemake/rules.py -> build/lib/snakemake copying snakemake/ruleinfo.py -> build/lib/snakemake copying snakemake/resources.py -> build/lib/snakemake copying snakemake/profiles.py -> build/lib/snakemake copying snakemake/persistence.py -> build/lib/snakemake copying snakemake/path_modifier.py -> build/lib/snakemake copying snakemake/parser.py -> build/lib/snakemake copying snakemake/output_index.py -> build/lib/snakemake copying snakemake/notebook.py -> build/lib/snakemake copying snakemake/modules.py -> build/lib/snakemake copying snakemake/logging.py -> build/lib/snakemake copying snakemake/jobs.py -> build/lib/snakemake copying snakemake/io.py -> build/lib/snakemake copying snakemake/interfaces.py -> build/lib/snakemake copying snakemake/gui.py -> build/lib/snakemake copying snakemake/exceptions.py -> build/lib/snakemake copying snakemake/decorators.py -> build/lib/snakemake copying snakemake/dag.py -> build/lib/snakemake copying snakemake/cwl.py -> build/lib/snakemake copying snakemake/checkpoints.py -> build/lib/snakemake copying snakemake/benchmark.py -> build/lib/snakemake copying snakemake/_version.py -> build/lib/snakemake copying snakemake/__main__.py -> build/lib/snakemake copying snakemake/__init__.py -> build/lib/snakemake creating build/lib/snakemake/unit_tests copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests creating build/lib/snakemake/template_rendering copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering creating build/lib/snakemake/report copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report copying snakemake/report/__init__.py -> build/lib/snakemake/report creating build/lib/snakemake/remote copying snakemake/remote/zenodo.py -> build/lib/snakemake/remote copying snakemake/remote/webdav.py -> build/lib/snakemake/remote copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote copying snakemake/remote/gfal.py -> build/lib/snakemake/remote copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote copying snakemake/remote/__init__.py -> build/lib/snakemake/remote copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote copying snakemake/remote/S3.py -> build/lib/snakemake/remote copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote copying snakemake/remote/GS.py -> build/lib/snakemake/remote copying snakemake/remote/FTP.py -> build/lib/snakemake/remote copying snakemake/remote/EGA.py -> build/lib/snakemake/remote copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote creating build/lib/snakemake/linting copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting copying snakemake/linting/rules.py -> build/lib/snakemake/linting copying snakemake/linting/links.py -> build/lib/snakemake/linting copying snakemake/linting/__init__.py -> build/lib/snakemake/linting creating build/lib/snakemake/executors copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors copying snakemake/executors/google_lifesciences.py -> build/lib/snakemake/executors copying snakemake/executors/ga4gh_tes.py -> build/lib/snakemake/executors copying snakemake/executors/flux.py -> build/lib/snakemake/executors copying snakemake/executors/common.py -> build/lib/snakemake/executors copying snakemake/executors/azure_batch.py -> build/lib/snakemake/executors copying snakemake/executors/__init__.py -> build/lib/snakemake/executors creating build/lib/snakemake/deployment copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment creating build/lib/snakemake/common copying snakemake/common/tbdstring.py -> build/lib/snakemake/common copying snakemake/common/__init__.py -> build/lib/snakemake/common creating build/lib/snakemake/caching copying snakemake/caching/remote.py -> build/lib/snakemake/caching copying snakemake/caching/local.py -> build/lib/snakemake/caching copying snakemake/caching/hash.py -> build/lib/snakemake/caching copying snakemake/caching/__init__.py -> build/lib/snakemake/caching creating build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates creating build/lib/snakemake/report/template copying snakemake/report/template/__init__.py -> build/lib/snakemake/report/template creating build/lib/snakemake/report/data copying snakemake/report/data/timeline.py -> build/lib/snakemake/report/data copying snakemake/report/data/runtimes.py -> build/lib/snakemake/report/data copying snakemake/report/data/rules.py -> build/lib/snakemake/report/data copying snakemake/report/data/rulegraph.py -> build/lib/snakemake/report/data copying snakemake/report/data/results.py -> build/lib/snakemake/report/data copying snakemake/report/data/packages.py -> build/lib/snakemake/report/data copying snakemake/report/data/common.py -> build/lib/snakemake/report/data copying snakemake/report/data/categories.py -> build/lib/snakemake/report/data copying snakemake/report/data/__init__.py -> build/lib/snakemake/report/data creating build/lib/snakemake/report/template/components copying snakemake/report/template/components/__init__.py -> build/lib/snakemake/report/template/components creating build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/slurm_submit.py -> build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/slurm_jobstep.py -> build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/__init__.py -> build/lib/snakemake/executors/slurm copying snakemake/report.css -> build/lib/snakemake copying snakemake/gui.html -> build/lib/snakemake copying snakemake/executors/jobscript.sh -> build/lib/snakemake/executors copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/report/template/style.css -> build/lib/snakemake/report/template copying snakemake/report/template/index.html.jinja2 -> build/lib/snakemake/report/template copying snakemake/report/template/logo.svg -> build/lib/snakemake/report/template copying snakemake/report/template/components/subcategory.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/stats.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/search_results.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/rule_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/rule_graph.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/result_view_button.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/result_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/report_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/navbar.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/menu.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/list_item.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/list_heading.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/icon.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/content.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/common.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/category.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/button.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/breadcrumbs.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/app.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/abstract_results.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/abstract_menu.js -> build/lib/snakemake/report/template/components UPDATING build/lib/snakemake/_version.py set build/lib/snakemake/_version.py to '7.32.4' installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64 creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/_version.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/gui.html -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/report.css -> build/bdist.linux-aarch64/wheel/snakemake creating build/bdist.linux-aarch64/wheel/snakemake/caching copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-aarch64/wheel/snakemake/caching copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-aarch64/wheel/snakemake/caching copying build/lib/snakemake/caching/local.py -> build/bdist.linux-aarch64/wheel/snakemake/caching copying build/lib/snakemake/caching/remote.py -> build/bdist.linux-aarch64/wheel/snakemake/caching creating build/bdist.linux-aarch64/wheel/snakemake/common copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-aarch64/wheel/snakemake/common copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-aarch64/wheel/snakemake/common creating build/bdist.linux-aarch64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-aarch64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-aarch64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-aarch64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-aarch64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-aarch64/wheel/snakemake/deployment creating build/bdist.linux-aarch64/wheel/snakemake/executors copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-aarch64/wheel/snakemake/executors creating build/bdist.linux-aarch64/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/__init__.py -> build/bdist.linux-aarch64/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/slurm_jobstep.py -> build/bdist.linux-aarch64/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/slurm_submit.py -> build/bdist.linux-aarch64/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-aarch64/wheel/snakemake/executors copying build/lib/snakemake/executors/azure_batch.py -> build/bdist.linux-aarch64/wheel/snakemake/executors copying build/lib/snakemake/executors/common.py -> build/bdist.linux-aarch64/wheel/snakemake/executors copying build/lib/snakemake/executors/flux.py -> build/bdist.linux-aarch64/wheel/snakemake/executors copying build/lib/snakemake/executors/ga4gh_tes.py -> build/bdist.linux-aarch64/wheel/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences.py -> build/bdist.linux-aarch64/wheel/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-aarch64/wheel/snakemake/executors creating build/bdist.linux-aarch64/wheel/snakemake/linting copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-aarch64/wheel/snakemake/linting copying build/lib/snakemake/linting/links.py -> build/bdist.linux-aarch64/wheel/snakemake/linting copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-aarch64/wheel/snakemake/linting copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-aarch64/wheel/snakemake/linting creating build/bdist.linux-aarch64/wheel/snakemake/remote copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-aarch64/wheel/snakemake/remote copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-aarch64/wheel/snakemake/remote copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-aarch64/wheel/snakemake/remote copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-aarch64/wheel/snakemake/remote copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-aarch64/wheel/snakemake/remote copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-aarch64/wheel/snakemake/remote copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-aarch64/wheel/snakemake/remote copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-aarch64/wheel/snakemake/remote copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-aarch64/wheel/snakemake/remote copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-aarch64/wheel/snakemake/remote copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-aarch64/wheel/snakemake/remote copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-aarch64/wheel/snakemake/remote copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-aarch64/wheel/snakemake/remote copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-aarch64/wheel/snakemake/remote copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-aarch64/wheel/snakemake/remote copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-aarch64/wheel/snakemake/remote copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-aarch64/wheel/snakemake/remote creating build/bdist.linux-aarch64/wheel/snakemake/report creating build/bdist.linux-aarch64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/__init__.py -> build/bdist.linux-aarch64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/categories.py -> build/bdist.linux-aarch64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/common.py -> build/bdist.linux-aarch64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/packages.py -> build/bdist.linux-aarch64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/results.py -> build/bdist.linux-aarch64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/rulegraph.py -> build/bdist.linux-aarch64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/rules.py -> build/bdist.linux-aarch64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/runtimes.py -> build/bdist.linux-aarch64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/timeline.py -> build/bdist.linux-aarch64/wheel/snakemake/report/data creating build/bdist.linux-aarch64/wheel/snakemake/report/template copying build/lib/snakemake/report/template/logo.svg -> build/bdist.linux-aarch64/wheel/snakemake/report/template copying build/lib/snakemake/report/template/index.html.jinja2 -> build/bdist.linux-aarch64/wheel/snakemake/report/template copying build/lib/snakemake/report/template/style.css -> build/bdist.linux-aarch64/wheel/snakemake/report/template creating build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/abstract_menu.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/abstract_results.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/app.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/breadcrumbs.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/button.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/category.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/common.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/content.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/icon.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/list_heading.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/list_item.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/menu.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/navbar.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/report_info.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/result_info.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/result_view_button.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/rule_graph.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/rule_info.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/search_results.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/stats.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/subcategory.js -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/__init__.py -> build/bdist.linux-aarch64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/__init__.py -> build/bdist.linux-aarch64/wheel/snakemake/report/template copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-aarch64/wheel/snakemake/report copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-aarch64/wheel/snakemake/report creating build/bdist.linux-aarch64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-aarch64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-aarch64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-aarch64/wheel/snakemake/template_rendering creating build/bdist.linux-aarch64/wheel/snakemake/unit_tests creating build/bdist.linux-aarch64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-aarch64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-aarch64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-aarch64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-aarch64/wheel/snakemake/unit_tests copying build/lib/snakemake/__init__.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/__main__.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/benchmark.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/cwl.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/dag.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/decorators.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/exceptions.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/gui.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/interfaces.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/io.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/jobs.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/logging.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/modules.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/notebook.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/output_index.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/parser.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/persistence.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/profiles.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/resources.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/rules.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/scheduler.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/script.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/shell.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/stats.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/utils.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/workflow.py -> build/bdist.linux-aarch64/wheel/snakemake copying build/lib/snakemake/wrapper.py -> build/bdist.linux-aarch64/wheel/snakemake running install_egg_info running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Copying snakemake.egg-info to build/bdist.linux-aarch64/wheel/snakemake-7.32.4-py3.12.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/snakemake-7.32.4.dist-info/WHEEL creating '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-wheel-vxtlnhh1/.tmp-rkt3zl1j/snakemake-7.32.4-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'snakemake/__init__.py' adding 'snakemake/__main__.py' adding 'snakemake/_version.py' adding 'snakemake/benchmark.py' adding 'snakemake/checkpoints.py' adding 'snakemake/cwl.py' adding 'snakemake/dag.py' adding 'snakemake/decorators.py' adding 'snakemake/exceptions.py' adding 'snakemake/gui.html' adding 'snakemake/gui.py' adding 'snakemake/interfaces.py' adding 'snakemake/io.py' adding 'snakemake/jobs.py' adding 'snakemake/logging.py' adding 'snakemake/modules.py' adding 'snakemake/notebook.py' adding 'snakemake/output_index.py' adding 'snakemake/parser.py' adding 'snakemake/path_modifier.py' adding 'snakemake/persistence.py' adding 'snakemake/profiles.py' adding 'snakemake/report.css' adding 'snakemake/resources.py' adding 'snakemake/ruleinfo.py' adding 'snakemake/rules.py' adding 'snakemake/scheduler.py' adding 'snakemake/script.py' adding 'snakemake/shell.py' adding 'snakemake/sourcecache.py' adding 'snakemake/stats.py' adding 'snakemake/target_jobs.py' adding 'snakemake/utils.py' adding 'snakemake/workflow.py' adding 'snakemake/wrapper.py' adding 'snakemake/caching/__init__.py' adding 'snakemake/caching/hash.py' adding 'snakemake/caching/local.py' adding 'snakemake/caching/remote.py' adding 'snakemake/common/__init__.py' adding 'snakemake/common/tbdstring.py' adding 'snakemake/deployment/__init__.py' adding 'snakemake/deployment/conda.py' adding 'snakemake/deployment/containerize.py' adding 'snakemake/deployment/env_modules.py' adding 'snakemake/deployment/singularity.py' adding 'snakemake/executors/__init__.py' adding 'snakemake/executors/azure_batch.py' adding 'snakemake/executors/common.py' adding 'snakemake/executors/flux.py' adding 'snakemake/executors/ga4gh_tes.py' adding 'snakemake/executors/google_lifesciences.py' adding 'snakemake/executors/google_lifesciences_helper.py' adding 'snakemake/executors/jobscript.sh' adding 'snakemake/executors/slurm/__init__.py' adding 'snakemake/executors/slurm/slurm_jobstep.py' adding 'snakemake/executors/slurm/slurm_submit.py' adding 'snakemake/linting/__init__.py' adding 'snakemake/linting/links.py' adding 'snakemake/linting/rules.py' adding 'snakemake/linting/snakefiles.py' adding 'snakemake/remote/AzBlob.py' adding 'snakemake/remote/EGA.py' adding 'snakemake/remote/FTP.py' adding 'snakemake/remote/GS.py' adding 'snakemake/remote/HTTP.py' adding 'snakemake/remote/NCBI.py' adding 'snakemake/remote/S3.py' adding 'snakemake/remote/S3Mocked.py' adding 'snakemake/remote/SFTP.py' adding 'snakemake/remote/XRootD.py' adding 'snakemake/remote/__init__.py' adding 'snakemake/remote/dropbox.py' adding 'snakemake/remote/gfal.py' adding 'snakemake/remote/gridftp.py' adding 'snakemake/remote/iRODS.py' adding 'snakemake/remote/webdav.py' adding 'snakemake/remote/zenodo.py' adding 'snakemake/report/__init__.py' adding 'snakemake/report/rulegraph_spec.py' adding 'snakemake/report/data/__init__.py' adding 'snakemake/report/data/categories.py' adding 'snakemake/report/data/common.py' adding 'snakemake/report/data/packages.py' adding 'snakemake/report/data/results.py' adding 'snakemake/report/data/rulegraph.py' adding 'snakemake/report/data/rules.py' adding 'snakemake/report/data/runtimes.py' adding 'snakemake/report/data/timeline.py' adding 'snakemake/report/template/__init__.py' adding 'snakemake/report/template/index.html.jinja2' adding 'snakemake/report/template/logo.svg' adding 'snakemake/report/template/style.css' adding 'snakemake/report/template/components/__init__.py' adding 'snakemake/report/template/components/abstract_menu.js' adding 'snakemake/report/template/components/abstract_results.js' adding 'snakemake/report/template/components/app.js' adding 'snakemake/report/template/components/breadcrumbs.js' adding 'snakemake/report/template/components/button.js' adding 'snakemake/report/template/components/category.js' adding 'snakemake/report/template/components/common.js' adding 'snakemake/report/template/components/content.js' adding 'snakemake/report/template/components/icon.js' adding 'snakemake/report/template/components/list_heading.js' adding 'snakemake/report/template/components/list_item.js' adding 'snakemake/report/template/components/menu.js' adding 'snakemake/report/template/components/navbar.js' adding 'snakemake/report/template/components/report_info.js' adding 'snakemake/report/template/components/result_info.js' adding 'snakemake/report/template/components/result_view_button.js' adding 'snakemake/report/template/components/rule_graph.js' adding 'snakemake/report/template/components/rule_info.js' adding 'snakemake/report/template/components/search_results.js' adding 'snakemake/report/template/components/stats.js' adding 'snakemake/report/template/components/subcategory.js' adding 'snakemake/template_rendering/__init__.py' adding 'snakemake/template_rendering/jinja2.py' adding 'snakemake/template_rendering/yte.py' adding 'snakemake/unit_tests/__init__.py' adding 'snakemake/unit_tests/templates/__init__.py' adding 'snakemake/unit_tests/templates/common.py.jinja2' adding 'snakemake/unit_tests/templates/ruletest.py.jinja2' adding 'snakemake-7.32.4.dist-info/AUTHORS.rst' adding 'snakemake-7.32.4.dist-info/LICENSE.md' adding 'snakemake-7.32.4.dist-info/METADATA' adding 'snakemake-7.32.4.dist-info/WHEEL' adding 'snakemake-7.32.4.dist-info/entry_points.txt' adding 'snakemake-7.32.4.dist-info/top_level.txt' adding 'snakemake-7.32.4.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Building wheel for snakemake (pyproject.toml): finished with status 'done' Created wheel for snakemake: filename=snakemake-7.32.4-py3-none-any.whl size=380737 sha256=5979d710d570ba4ab60e189303a13a08945dc38644be46e138d8850bdfb3f59a Stored in directory: /builddir/.cache/pip/wheels/53/8b/cb/3dce719624720fd97280e70d5666cec6215f6d7c6704f015ae Successfully built snakemake + find docs -type f -name '*.svg' + read -r fn ++ dirname docs/executor_tutorial/workflow/quals.svg ++ basename docs/executor_tutorial/workflow/quals.svg .svg + rsvg-convert --format=pdf --output=docs/executor_tutorial/workflow/quals.pdf docs/executor_tutorial/workflow/quals.svg + read -r fn + find docs/executor_tutorial -type f -exec gawk '/\.svg/ { print FILENAME; nextfile }' '{}' + + xargs -r -t sed -r -i 's/(image::.*)\.svg/\1\.pdf/' sed -r -i 's/(image::.*)\.svg/\1\.pdf/' docs/executor_tutorial/google_lifesciences.rst docs/executor_tutorial/azure_batch.rst + PYTHONPATH=/builddir/build/BUILD/snakemake-7.32.4 + /usr/bin/make -O -j4 V=1 VERBOSE=1 -C docs latexpdf 'SPHINXOPTS=-j${RPM_BUILD_NCPUS}' make: Entering directory '/builddir/build/BUILD/snakemake-7.32.4/docs' sphinx-build -b latex -d _build/doctrees -j4 . _build/latex Running Sphinx v7.2.6 making output directory... done myst v2.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=set(), disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... building [latex]: all documents updating environment: [new config] 38 added, 0 changed, 0 removed reading sources... [100%] tutorial/short .. tutorial/tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done copying TeX support files... copying TeX support files... done processing Snakemake.tex... index getting_started/installation tutorial/tutorial tutorial/setup tutorial/basics tutorial/advanced tutorial/additional_features tutorial/short executor_tutorial/tutorial executor_tutorial/azure_batch executor_tutorial/azure_aks executor_tutorial/google_lifesciences executor_tutorial/flux snakefiles/best_practices executing/cli executing/cluster executing/cloud executing/grouping executing/caching executing/interoperability executing/monitoring snakefiles/writing_snakefiles snakefiles/rules snakefiles/configuration snakefiles/modularization snakefiles/remote_files snakefiles/utils snakefiles/deployment snakefiles/reporting snakefiles/testing snakefiles/foreign_wms project_info/citations project_info/more_resources project_info/faq project_info/contributing project_info/authors project_info/history project_info/license resolving references... done writing... done copying images... [100%] project_info/img/idea.png build succeeded, 491 warnings. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). Running LaTeX files through pdflatex... /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/google_lifesciences.rst:13: WARNING: duplicate label setup, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/flux.rst /builddir/build/BUILD/snakemake-7.32.4/docs/index.rst:89: WARNING: duplicate label resources, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/flux.rst /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:688: WARNING: Title underline too short. How can I avoid system /tmp to be used when combining singularity and conda? ------------------------------------------------------ /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:688: WARNING: Title underline too short. How can I avoid system /tmp to be used when combining singularity and conda? ------------------------------------------------------ /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst:376: WARNING: duplicate label step 2, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst:396: WARNING: duplicate label step 3, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst:416: WARNING: duplicate label step 4, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst:435: WARNING: duplicate label step 5, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst:457: WARNING: duplicate label step 6, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst:476: WARNING: duplicate label step 7, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst:492: WARNING: duplicate label step 8, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst:174: CRITICAL: Title level inconsistent: Use templating in profiles ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst:111: WARNING: duplicate label profiles, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst:72: WARNING: duplicate label kubernetes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst:233: WARNING: duplicate label machine types, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst:406: WARNING: duplicate label execution, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst:490: WARNING: duplicate label execution, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cluster.rst:13: WARNING: Title overline too short. -------------- Executing on SLURM clusters -------------- /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cluster.rst:5: WARNING: duplicate label cluster, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/monitoring.rst:5: WARNING: duplicate label monitoring, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/monitoring.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_aks.rst:184: ERROR: Unexpected indentation. /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:47: WARNING: Title underline too short. Create an Azure Storage Account and upload example data ::::::::::::::::::::::::::::::::::::::::::::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:47: WARNING: Title underline too short. Create an Azure Storage Account and upload example data ::::::::::::::::::::::::::::::::::::::::::::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:119: WARNING: Title underline too short. Azure Blob Storage Warning: ::::::::::::::::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:119: WARNING: Title underline too short. Azure Blob Storage Warning: ::::::::::::::::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:367: WARNING: Title underline too short. Defining a Start Task ::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:367: WARNING: Title underline too short. Defining a Start Task ::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:386: WARNING: Title underline too short. Autoscaling and Task Distribution ::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:386: WARNING: Title underline too short. Autoscaling and Task Distribution ::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:28: WARNING: duplicate label setup, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_aks.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:163: WARNING: duplicate label running the workflow, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_aks.rst /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/reporting.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/reporting.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:5: WARNING: Duplicate explicit target name: "humanfriendly package". /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:1256: WARNING: malformed hyperlink target. /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/advanced.rst:82: WARNING: duplicate label exercise, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/additional_features.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/advanced.rst:177: WARNING: duplicate label exercise, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/advanced.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/advanced.rst:213: WARNING: duplicate label exercise, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/advanced.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/advanced.rst:250: WARNING: duplicate label exercise, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/advanced.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/advanced.rst:304: WARNING: duplicate label exercise, other instance 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/builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/best_practices.rst:22: WARNING: undefined label: 'snakefiles_peps' /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cluster.rst:65: WARNING: undefined label: 'snakefiles-mpi' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:316: WARNING: undefined label: 'user_manual-snakemake_options' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:412: WARNING: undefined label: 'user_manual-snakemake_options' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:433: WARNING: undefined label: 'resources_remote_execution' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:441: WARNING: undefined label: 'resources_remote_execution' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:1108: WARNING: undefined label: 'snakefiles_external-scripts' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:1290: WARNING: undefined label: 'snakefiles_input-functions' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:1362: WARNING: undefined label: 'snakefiles_ensure' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:1951: WARNING: undefined label: 'job-grouping' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:1951: WARNING: undefined label: 'job-grouping' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/configuration.rst:35: WARNING: undefined label: 'api_reference_snakemake' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/utils.rst:7: WARNING: undefined label: 'utils-api' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/foreign_wms.rst:30: WARNING: undefined label: 'snakefiles-local-rule' WARNING: Could not fetch remote image: https://img.shields.io/badge/Gitpod-ready--to--code-blue?logo=gitpod [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /badge/Gitpod-ready--to--code-blue?logo=gitpod (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/conda/dn/bioconda/snakemake.svg?label=Bioconda [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /conda/dn/bioconda/snakemake.svg?label=Bioconda (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/pypi/pyversions/snakemake.svg [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /pypi/pyversions/snakemake.svg (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/pypi/v/snakemake.svg [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /pypi/v/snakemake.svg (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/github/workflow/status/snakemake/snakemake/Publish%20to%20Docker%20Hub?color=blue&label=docker%20container&branch=main [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /github/workflow/status/snakemake/snakemake/Publish%20to%20Docker%20Hub?color=blue&label=docker%20container&branch=main (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://github.com/snakemake/snakemake/workflows/CI/badge.svg?branch=main&label=tests [HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /snakemake/snakemake/workflows/CI/badge.svg?branch=main&label=tests (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/badge/stack-overflow-orange.svg [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /badge/stack-overflow-orange.svg (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/twitter/follow/johanneskoester.svg?style=social&label=Follow [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /twitter/follow/johanneskoester.svg?style=social&label=Follow (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/discord/753690260830945390?label=discord%20chat [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /discord/753690260830945390?label=discord%20chat (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/github/stars/snakemake/snakemake?style=social [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /github/stars/snakemake/snakemake?style=social (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/badge/snakemake-≥5.6.0-brightgreen.svg?style=flat [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /badge/snakemake-%E2%89%A55.6.0-brightgreen.svg?style=flat (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:266: WARNING: Lexing literal_block '# required env variables\nexport AZ_BLOB_PREFIX=snakemake-tutorial\nexport AZ_BATCH_ACCOUNT_URL="${batch_account_url}"\nexport AZ_BATCH_ACCOUNT_KEY="${az_batch_account_key}"\nexport AZ_BLOB_ACCOUNT_URL="${storage_account_url_with_sas}"\n\n# optional environment variables with defaults listed\n\n# network and identity\n# export BATCH_POOL_SUBNET_ID=\n# export BATCH_MANAGED_IDENTITY_RESOURCE_ID=\n# export BATCH_MANAGED_IDENTITY_CLIENT_ID=\n\n# if unset, default is "classic"\n# export BATCH_NODE_COMMUNICATION_SIMPLIFIED=true\n\n# don\'t recommend changing\n# export BATCH_POOL_IMAGE_PUBLISHER=microsoft-azure-batch\n# export BATCH_POOL_IMAGE_OFFER=ubuntu-server-container\n# export BATCH_POOL_IMAGE_SKU=20-04-lts\n# export BATCH_POOL_RESOURCE_FILE_PREFIX=resource-files\n\n# export BATCH_POOL_VM_CONTAINER_IMAGE=ubuntu\n# export BATCH_POOL_VM_NODE_AGENT_SKU_ID="batch.node.ubuntu 20.04"\n\n# can be used to add a startup task to the batch nodes formatted as an sas url to a bash script\n# export BATCH_NODE_START_TASK_SAS_URL=\n\n# can be useful to alter task distribution across nodes\n\n# export BATCH_POOL_VM_SIZE=Standard_D2_v3\n# export BATCH_NODE_FILL_TYPE=spread\n# export BATCH_POOL_NODE_COUNT=1\n# export BATCH_TASKS_PER_NODE=1\n\n# container registry configuration to pull container image from custom registry\n# export BATCH_CONTAINER_REGISTRY_URL=\n# export BATCH_CONTAINER_REGISTRY_USER=\n# export BATCH_CONTAINER_REGISTRY_PASS=\n\nsnakemake \\\n --jobs 3 \\\n -rpf --verbose --default-remote-prefix $AZ_BLOB_PREFIX \\\n --use-conda \\\n --default-remote-provider AzBlob \\\n --envvars AZ_BLOB_ACCOUNT_URL \\\n --az-batch \\\n --container-image snakemake/snakemake \\\n --az-batch-account-url $AZ_BATCH_ACCOUNT_URL' as "console" resulted in an error at token: "'". Retrying in relaxed mode. /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:2414: WARNING: Pygments lexer name 'jinja2' is not known make: Leaving directory '/builddir/build/BUILD/snakemake-7.32.4/docs' /usr/bin/make -C _build/latex all-pdf make[1]: Entering directory '/builddir/build/BUILD/snakemake-7.32.4/docs/_build/latex' latexmk -pdf -dvi- -ps- 'Snakemake.tex' Rc files read: /etc/latexmkrc latexmkrc Latexmk: This is Latexmk, John Collins, 24 Dec. 2023. Version 4.82. No existing .aux file, so I'll make a simple one, and require run of *latex. Latexmk: applying rule 'pdflatex'... 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[165] [166] [167] [168] [169] [170] [171] [172] Underfull \hbox (badness 10000) in paragraph at lines 11299--11301 []\TU/FreeSerif(0)/m/n/10 When used in conjunction with \TU/FreeMono(0)/m/n/10 NCBI.RemoteProvider().search()\TU/FreeSerif(0)/m/n/10 , Snakemake and \TU/FreeM ono(0)/m/n/10 NCBI. Overfull \vbox (1.03299pt too high) detected at line 11355 [173] [174] Underfull \hbox (badness 5133) in paragraph at lines 11479--11486 []\TU/FreeSerif(0)/m/n/10 The default location for the configuration file is \T U/FreeMono(0)/m/n/10 ~/.irods/irods_environment.json\TU/FreeSerif(0)/m/n/10 . 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[240] [241] [242] [243] [244] Underfull \hbox (badness 10000) in paragraph at lines 16974--16976 []\TU/FreeSerif(0)/m/n/10 provide temporary IPYTHONDIR for notebook execution i n order to avoid race conditions in [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255] [256] [257] [258] [259] [260] [261] [262] [263] [264] [265] [266] [267] [268] Underfull \hbox (badness 10000) in paragraph at lines 19438--19441 []\TU/FreeSerif(0)/m/n/10 Allow URL to local git repo with wrapper directive (\ TU/FreeMono(0)/m/n/10 git+file:///path/to/your/repo/ [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] Underfull \hbox (badness 10000) in paragraph at lines 20504--20510 []\TU/FreeSerif(0)/m/n/10 When submitting cluster jobs (either through [][]\TU/ FreeMono(0)/m/n/10 cluster \TU/FreeSerif(0)/m/n/10 or [][]\TU/FreeMono(0)/m/n/1 0 drmaa\TU/FreeSerif(0)/m/n/10 ), you can now use [279] [280] [281] No file Snakemake.ind. Package sphinx Warning: The package pict2e is required for rounded boxes. (sphinx) As it does not seem to be available on your system, (sphinx) options setting radii have all been ignored. Package sphinx Warning: The package ellipse is required for elliptical corners. (sphinx) As it does not seem to be available on your system, (sphinx) all non-straight corners have used circle arcs.. [282] (./Snakemake.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `Snakemake.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) Output written on Snakemake.pdf (286 pages). Transcript written on Snakemake.log. Latexmk: Getting log file 'Snakemake.log' Latexmk: Examining 'Snakemake.fls' Latexmk: Examining 'Snakemake.log' Latexmk: Index file 'Snakemake.idx' was written Latexmk: References changed. Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'Snakemake.pdf' Latexmk: applying rule 'makeindex Snakemake.idx'... Rule 'makeindex Snakemake.idx': Reasons for rerun Category 'other': Rerun of 'makeindex Snakemake.idx' forced or previously required ------------ Run number 1 of rule 'makeindex Snakemake.idx' ------------ ------------ Running 'internal xindy -L english -C utf8 -M sphinx.xdy -o "Snakemake.ind" "Snakemake.idx"' ------------ Latexmk: calling xindy( -L english -C utf8 -M sphinx.xdy -o "Snakemake.ind" "Snakemake.idx" ) Latexmk: applying rule 'pdflatex'... Rule 'pdflatex': Reasons for rerun Changed files or newly in use/created: Snakemake.aux Snakemake.ind Snakemake.out Snakemake.toc ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'xelatex -recorder "Snakemake.tex"' ------------ This is XeTeX, Version 3.141592653-2.6-0.999995 (TeX Live 2023) (preloaded format=xelatex) restricted \write18 enabled. entering extended mode (./Snakemake.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-02-22> (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty Package cmap Warning: pdftex not detected - exiting. ) (/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.sty (/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-xetex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec-xetex.sty (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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(sphinx) All non-straight corners will use circle arcs.. ) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty) (/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty)) (./sphinxlatexnumfig.sty) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty ) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip-2001-04-09.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hxetex.def (/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file Snakemake.idx (./Snakemake.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) *geometry* driver: auto-detecting *geometry* detected driver: xetex (./Snakemake.out) (./Snakemake.out) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1] [2] (./Snakemake.toc) [1] [2] [1] [2] Chapter 1. [3] [4] Chapter 2. [5] [6] Chapter 3. [7] [8] Chapter 4. [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Overfull \vbox (1.78299pt too high) detected at line 2638 [43] [44] [45] [46] Overfull \hbox (16.155pt too wide) in paragraph at lines 2923--2925 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_IMAGE_PUBLISHER| Overfull \hbox (40.465pt too wide) in paragraph at lines 2953--2955 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_VM_CONTAINER_IMAGE| Overfull \hbox (52.17499pt too wide) in paragraph at lines 2963--2965 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_VM_NODE_AGENT_SKU_ID| Overfull \hbox (42.36499pt too wide) in paragraph at lines 3003--3005 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_RESOURCE_FILE_PREFIX| Overfull \hbox (34.435pt too wide) in paragraph at lines 3013--3015 []|\TU/FreeSerif(0)/m/n/10 BATCH_NODE_START_TASK_SAS_URL| Overfull \hbox (72.44499pt too wide) in paragraph at lines 3033--3035 []|\TU/FreeSerif(0)/m/n/10 BATCH_NODE_COMMUNICATION_SIMPLIFIED| Overfull \hbox (67.97499pt too wide) in paragraph at lines 3053--3055 []|\TU/FreeSerif(0)/m/n/10 BATCH_MANAGED_IDENTITY_RESOURCE_ID| Overfull \hbox (51.485pt too wide) in paragraph at lines 3063--3065 []|\TU/FreeSerif(0)/m/n/10 BATCH_MANAGED_IDENTITY_CLIENT_ID| Overfull \hbox (28.965pt too wide) in paragraph at lines 3073--3075 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_URL| Overfull \hbox (34.045pt too wide) in paragraph at lines 3083--3085 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_USER| Overfull \hbox (31.625pt too wide) in paragraph at lines 3093--3095 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_PASS| [47] Overfull \vbox (0.72789pt too high) detected at line 3160 [48] Overfull \vbox (1.98596pt too high) detected at line 3201 [49] Underfull \vbox (badness 10000) detected at line 3201 Overfull \vbox (1.98598pt too high) detected at line 3201 [50] Underfull \hbox (badness 10000) in paragraph at lines 3235--3239 \TU/FreeSerif(0)/m/n/10 The azure batch executor supports autoscaling of the ba tch nodes by including the flag [51] [52] Underfull \hbox (badness 10000) in paragraph at lines 3376--3388 []\TU/FreeSerif(0)/m/n/10 There is a lot going on here, so let’s unpack it: thi s creates an [][]auto-scaling Kubernetes cluster[][] [53] [54] [55] [56] [57] Overfull \vbox (1.98596pt too high) detected at line 3840 [58] [59] [60] Underfull \vbox (badness 10000) detected at line 4080 Overfull \vbox (1.98598pt too high) detected at line 4080 [61] Underfull \vbox (badness 10000) detected at line 4080 Overfull \vbox (1.98598pt too high) detected at line 4080 [62] [63] [64] [65] [66] Underfull \vbox (badness 10000) detected at line 4358 Underfull \vbox (badness 10000) detected at line 4358 [67] Underfull \vbox (badness 10000) detected at line 4358 Overfull \vbox (1.98598pt too high) detected at line 4358 [68] Underfull \vbox (badness 1565) detected at line 4404 [69] [70] Overfull \vbox (2.98596pt too high) detected at line 4504 [71] [72] [73] Underfull \vbox (badness 2126) detected at line 4740 [74] [75] [76] [77] [78] Overfull \vbox (2.033pt too high) detected at line 5158 [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] Overfull \hbox (11.06543pt too wide) in paragraph at lines 5685--5687 []\TU/FreeSerif(0)/m/n/10 Target particular jobs by RULE:WILDCARD1=VALUE,WILDCA RD2=VALUE,… [89] [90] [91] [92] [93] Underfull \hbox (badness 10000) in paragraph at lines 5946--5948 []\TU/FreeSerif(0)/m/n/10 Additional tibanna config e.g. –tibanna-config spot_i nstance=true sub- [94] [95] [96] Underfull \hbox (badness 10000) in paragraph at lines 6273--6273 []\TU/FreeSans(0)/m/n/10 Snakemake re- Overfull \hbox (0.88507pt too wide) in paragraph at lines 6273--6273 []\TU/FreeMono(0)/m/n/10 slurm_partition| Overfull \hbox (3.79732pt too wide) in paragraph at lines 6273--6273 [][]\TU/FreeMono(0)/m/n/10 c\TU/FreeSerif(0)/m/n/10 /[][]\TU/FreeMono(0)/m/n/10 cpus[]per[]task| [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] Underfull \hbox (badness 10000) in paragraph at lines 7013--7017 []\TU/FreeSerif(0)/m/n/10 The azure batch executor supports autoscaling of the batch nodes by including the flag [108] [109] Underfull \hbox (badness 10000) in paragraph at lines 7213--7216 []|\TU/FreeSerif(0)/m/n/10 Snakemake gets the status of panoptes. Underfull \hbox (badness 6859) in paragraph at lines 7213--7216 \TU/FreeSerif(0)/m/n/10 Snakemake continues to run if the status Underfull \hbox (badness 10000) in paragraph at lines 7230--7232 []|\TU/FreeMono(0)/m/n/10 / Overfull \hbox (9.78429pt too wide) in paragraph at lines 7230--7232 \TU/FreeMono(0)/m/n/10 update_workflow_status| [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] Underfull \hbox (badness 5652) in paragraph at lines 8976--8980 \TU/FreeSerif(0)/m/n/10 Snakemake tracks the code that was used to create your files. In combination with [][]\TU/FreeMono(0)/m/n/10 summary \TU/FreeSerif(0)/ m/n/10 or [137] [138] [139] [140] [141] [142] [143] [144] Overfull \vbox (2.64099pt too high) detected at line 9545 [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] Overfull \vbox (0.688pt too high) detected at line 10609 [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] Underfull \hbox (badness 10000) in paragraph at lines 11299--11301 []\TU/FreeSerif(0)/m/n/10 When used in conjunction with \TU/FreeMono(0)/m/n/10 NCBI.RemoteProvider().search()\TU/FreeSerif(0)/m/n/10 , Snakemake and \TU/FreeM ono(0)/m/n/10 NCBI. Overfull \vbox (1.03299pt too high) detected at line 11355 [173] [174] Underfull \hbox (badness 5133) in paragraph at lines 11479--11486 []\TU/FreeSerif(0)/m/n/10 The default location for the configuration file is \T U/FreeMono(0)/m/n/10 ~/.irods/irods_environment.json\TU/FreeSerif(0)/m/n/10 . T he \TU/FreeMono(0)/m/n/10 Re- Underfull \hbox (badness 10000) in paragraph at lines 11479--11486 \TU/FreeMono(0)/m/n/10 moteProvider() \TU/FreeSerif(0)/m/n/10 class accepts the parameter \TU/FreeMono(0)/m/n/10 irods_env_file \TU/FreeSerif(0)/m/n/10 where an alternative path to the [175] [176] [177] Underfull \hbox (badness 10000) in paragraph at lines 11628--11634 \TU/FreeSerif(0)/m/n/10 If you need to access a deposition with restricted acce ss, you have to additionally provide a \TU/FreeMono(0)/m/n/10 re- [178] [179] Underfull \hbox (badness 5878) in paragraph at lines 11786--11792 []\TU/FreeSerif(0)/m/n/10 First, we load a local configuration file. Next, we d efine the module \TU/FreeMono(0)/m/n/10 dna_seq \TU/FreeSerif(0)/m/n/10 to be l oaded from [180] Overfull \vbox (2.98596pt too high) detected at line 11881 [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] Overfull \vbox (2.0pt too high) has occurred while \output is active [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] Underfull \vbox (badness 10000) detected at line 13935 Overfull \vbox (1.98598pt too high) detected at line 13935 [211] [212] Underfull \hbox (badness 10000) in paragraph at lines 14076--14079 []\TU/FreeSerif(0)/m/n/10 Provide hyperlink targets, at least for the first two section levels. For this, use the format [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] Missing character: There is no ⚠ (U+26A0) in font [FreeSansBold.otf]/OT:script= latn;language=dflt;! [240] [241] [242] [243] [244] Underfull \hbox (badness 10000) in paragraph at lines 16974--16976 []\TU/FreeSerif(0)/m/n/10 provide temporary IPYTHONDIR for notebook execution i n order to avoid race conditions in [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255] [256] [257] [258] [259] [260] [261] [262] [263] [264] [265] [266] [267] [268] Underfull \hbox (badness 10000) in paragraph at lines 19438--19441 []\TU/FreeSerif(0)/m/n/10 Allow URL to local git repo with wrapper directive (\ TU/FreeMono(0)/m/n/10 git+file:///path/to/your/repo/ [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] Underfull \hbox (badness 10000) in paragraph at lines 20504--20510 []\TU/FreeSerif(0)/m/n/10 When submitting cluster jobs (either through [][]\TU/ FreeMono(0)/m/n/10 cluster \TU/FreeSerif(0)/m/n/10 or [][]\TU/FreeMono(0)/m/n/1 0 drmaa\TU/FreeSerif(0)/m/n/10 ), you can now use [279] [280] [281] (./Snakemake.ind) Package sphinx Warning: The package pict2e is required for rounded boxes. (sphinx) As it does not seem to be available on your system, (sphinx) options setting radii have all been ignored. Package sphinx Warning: The package ellipse is required for elliptical corners. (sphinx) As it does not seem to be available on your system, (sphinx) all non-straight corners have used circle arcs.. [282] (./Snakemake.aux) ) (see the transcript file for additional information) Output written on Snakemake.pdf (286 pages). Transcript written on Snakemake.log. Latexmk: Getting log file 'Snakemake.log' Latexmk: Examining 'Snakemake.fls' Latexmk: Examining 'Snakemake.log' Latexmk: Index file 'Snakemake.idx' was written Latexmk: Log file says output to 'Snakemake.pdf' Latexmk: Summary of warnings from last run of *latex: =====Latex reported missing or unavailable character(s). =====See log file for details. Latexmk: All targets () are up-to-date make[1]: Leaving directory '/builddir/build/BUILD/snakemake-7.32.4/docs/_build/latex' make: Entering directory '/builddir/build/BUILD/snakemake-7.32.4/docs' pdflatex finished; the PDF files are in _build/latex. make: Leaving directory '/builddir/build/BUILD/snakemake-7.32.4/docs' Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.tTvX7N Latexmk: Missing input file 'Snakemake.toc' (or dependence on it) from following: No file Snakemake.toc. Latexmk: Missing input file 'Snakemake.ind' (or dependence on it) from following: No file Snakemake.ind. Latexmk: ====Undefined refs and citations with line #s in .tex file: Missing character: There is no ⚠ (U+26A0) in font [FreeSansBold.otf]/OT:script= Missing character: There is no ⚠ (U+26A0) in font [FreeSansBold.otf]/OT:script=latn;language=dflt;! + RPM_EC=0 ++ jobs -p + exit 0 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64 ++ dirname /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-7.32.4 ++ ls /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir/snakemake-7.32.4-py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=snakemake==7.32.4 + '[' -z snakemake==7.32.4 ']' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir snakemake==7.32.4 Using pip 23.3.1 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir Processing ./pyproject-wheeldir/snakemake-7.32.4-py3-none-any.whl Installing collected packages: snakemake Creating /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/bin changing mode of /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/bin/snakemake to 755 changing mode of /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/bin/snakemake-bash-completion to 755 Successfully installed snakemake-7.32.4 + '[' -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/bin/snakemake /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/bin/snakemake-bash-completion /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/bin/snakemake: updating /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/bin/snakemake-bash-completion: updating + rm -rfv /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/snakemake-7.32.4-3.fc40.aarch64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/lib/python3.12/site-packages ']' + site_dirs+=("/usr/lib/python3.12/site-packages") + '[' /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/lib/python3.12/site-packages ']' + '[' -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/lib64/python3.12/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64 --record /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/RECORD --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.aarch64-pyproject-record + rm -fv /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/RECORD removed '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/snakemake-7.32.4-3.fc40.aarch64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=2 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/snakemake-7.32.4-3.fc40.aarch64-pyproject-files --output-modules /builddir/build/BUILD/snakemake-7.32.4-3.fc40.aarch64-pyproject-modules --buildroot /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/snakemake-7.32.4-3.fc40.aarch64-pyproject-record --prefix /usr -l snakemake + install -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/man/man1 + PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/bin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/lib/python3.12/site-packages + help2man --no-info '--name=Metapackage for snakemake: azure extras' snakemake + install -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/bash-completion/completions + touch Snakefile + PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/bin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/lib/python3.12/site-packages + snakemake --bash-completion + install -t /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/nano -D -m 0644 -p misc/nano/syntax/snakemake.nanorc + install -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/vim/vimfiles + cp -vrp misc/vim/README.md misc/vim/ftdetect misc/vim/ftplugin misc/vim/syntax /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/vim/vimfiles 'misc/vim/README.md' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/vim/vimfiles/README.md' 'misc/vim/ftdetect' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/vim/vimfiles/ftdetect' 'misc/vim/ftdetect/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/vim/vimfiles/ftdetect/snakemake.vim' 'misc/vim/ftplugin' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/vim/vimfiles/ftplugin' 'misc/vim/ftplugin/snakemake' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/vim/vimfiles/ftplugin/snakemake' 'misc/vim/ftplugin/snakemake/folding.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/vim/vimfiles/ftplugin/snakemake/folding.vim' 'misc/vim/ftplugin/snakemake/sections.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/vim/vimfiles/ftplugin/snakemake/sections.vim' 'misc/vim/syntax' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/vim/vimfiles/syntax' 'misc/vim/syntax/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/vim/vimfiles/syntax/snakemake.vim' + find /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/vim/vimfiles -type f -name 'README.*' -print -delete /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/vim/vimfiles/README.md + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 7.32.4-3.fc40 --unique-debug-suffix -7.32.4-3.fc40.aarch64 --unique-debug-src-base snakemake-7.32.4-3.fc40.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/snakemake-7.32.4 find-debuginfo: starting Extracting debug info from 0 files Creating .debug symlinks for symlinks to ELF files find: ‘debug’: No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/lib/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.CevjbW + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-7.32.4 + k='not test_lint[long_run-positive]' + k='not test_lint[long_run-positive] and not test_tibanna' + k='not test_lint[long_run-positive] and not test_tibanna and not test_tes' + k='not test_lint[long_run-positive] and not test_tibanna and not test_tes and not test_slurm_' + ignore=' --ignore=tests/test_google_lifesciences.py' + ignore=' --ignore=tests/test_google_lifesciences.py --ignore-glob=tests/test_conda_python_3_7_script/*' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=4 + /usr/bin/pytest -v -k 'not test_lint[long_run-positive] and not test_tibanna and not test_tes and not test_slurm_' --ignore=tests/test_google_lifesciences.py '--ignore-glob=tests/test_conda_python_3_7_script/*' ============================= test session starts ============================== platform linux -- Python 3.12.1, pytest-7.4.3, pluggy-1.3.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/snakemake-7.32.4 plugins: requests-mock-1.10.0 collecting ... collected 66 items / 8 deselected / 58 selected tests/test_azure_batch_executor.py::test_az_batch_executor SKIPPED (...) [ 1%] tests/test_expand.py::test_simple_expand PASSED [ 3%] tests/test_expand.py::test_allow_missing PASSED [ 5%] tests/test_io.py::test_wildcard_regex PASSED [ 6%] tests/test_io.py::test_expand PASSED [ 8%] tests/test_kubernetes.py::test_kubernetes_plain SKIPPED (Skipping GC...) [ 10%] tests/test_kubernetes.py::test_kubernetes_conda SKIPPED (Skipping GC...) [ 12%] tests/test_kubernetes.py::test_kubernetes_singularity SKIPPED (Skipp...) [ 13%] tests/test_kubernetes.py::test_kubernetes_conda_singularity SKIPPED [ 15%] tests/test_kubernetes.py::test_issue1041 SKIPPED (Skipping GCLOUD te...) [ 17%] tests/test_linting.py::test_lint[version-positive] PASSED [ 18%] tests/test_linting.py::test_lint[version-negative] PASSED [ 20%] tests/test_linting.py::test_lint[tab_usage-positive] PASSED [ 22%] tests/test_linting.py::test_lint[tab_usage-negative] PASSED [ 24%] tests/test_linting.py::test_lint[singularity-positive] PASSED [ 25%] tests/test_linting.py::test_lint[singularity-negative] PASSED [ 27%] tests/test_linting.py::test_lint[path_add-positive] PASSED [ 29%] tests/test_linting.py::test_lint[path_add-negative] PASSED [ 31%] tests/test_linting.py::test_lint[params_prefix-positive] PASSED [ 32%] tests/test_linting.py::test_lint[params_prefix-negative] PASSED [ 34%] tests/test_linting.py::test_lint[not_used_params-positive] PASSED [ 36%] tests/test_linting.py::test_lint[not_used_params-negative] PASSED [ 37%] tests/test_linting.py::test_lint[mixed_func_and_rules-positive] PASSED [ 39%] tests/test_linting.py::test_lint[mixed_func_and_rules-negative] PASSED [ 41%] tests/test_linting.py::test_lint[missing_software_definition-positive] PASSED [ 43%] tests/test_linting.py::test_lint[missing_software_definition-negative] PASSED [ 44%] tests/test_linting.py::test_lint[long_run-negative] PASSED [ 46%] tests/test_linting.py::test_lint[log_directive-positive] PASSED [ 48%] tests/test_linting.py::test_lint[log_directive-negative] PASSED [ 50%] tests/test_linting.py::test_lint[iofile_by_index-positive] PASSED [ 51%] tests/test_linting.py::test_lint[iofile_by_index-negative] PASSED [ 53%] tests/test_linting.py::test_lint[envvars-positive] PASSED [ 55%] tests/test_linting.py::test_lint[envvars-negative] PASSED [ 56%] tests/test_linting.py::test_lint[dynamic-positive] PASSED [ 58%] tests/test_linting.py::test_lint[dynamic-negative] PASSED [ 60%] tests/test_linting.py::test_lint[absolute_paths-positive] PASSED [ 62%] tests/test_linting.py::test_lint[absolute_paths-negative] PASSED [ 63%] tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 65%] tests/test_schema.py::test_config PASSED [ 67%] tests/test_schema.py::test_config_ref PASSED [ 68%] tests/test_schema.py::test_dataframe PASSED [ 70%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_shebang_and_second_manifest PASSED [ 72%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_with_shebang PASSED [ 74%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_without_shebang PASSED [ 75%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_empty_line_without_shebang PASSED [ 77%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_is_case_insensitive PASSED [ 79%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spacing_has_no_impact PASSED [ 81%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_formatting_not_touched_even_if_wrong PASSED [ 82%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spelt_wrong PASSED [ 84%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_shebang PASSED [ 86%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_without_shebang PASSED [ 87%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_spacing_around_language PASSED [ 89%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_has_non_cargo_block PASSED [ 91%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_missing_closing_fence PASSED [ 93%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_not_in_first_comment_block PASSED [ 94%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_outer_line_doc_comment PASSED [ 96%] tests/test_script.py::TestBashEncoder::test_named_list_one_named_one_str PASSED [ 98%] tests/test_script.py::TestBashEncoder::test_named_list_named_is_list PASSED [100%] =============================== warnings summary =============================== tests/test_schema.py: 12 warnings /builddir/build/BUILD/snakemake-7.32.4/snakemake/utils.py:50: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. from jsonschema import validators, RefResolver tests/test_schema.py::test_config :488: DeprecationWarning: Type google.protobuf.pyext._message.ScalarMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/test_schema.py::test_config :488: DeprecationWarning: Type google.protobuf.pyext._message.MessageMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/test_schema.py::test_config /usr/lib64/python3.12/site-packages/google/protobuf/internal/well_known_types.py:92: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). _EPOCH_DATETIME = datetime.utcfromtimestamp(0) tests/test_schema.py::test_dataframe /usr/lib64/python3.12/site-packages/pandas/core/algorithms.py:522: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) common = np.find_common_type([values.dtype, comps_array.dtype], []) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ========== 52 passed, 6 skipped, 8 deselected, 16 warnings in 14.34s =========== + RPM_EC=0 ++ jobs -p + exit 0 Processing files: snakemake-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake) = 7.32.4 python3dist(snakemake) = 7.32.4 snakemake = 7.32.4-3.fc40 vim-snakemake = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (python3.12dist(jinja2) < 4~~ with python3.12dist(jinja2) >= 3) (python3.12dist(yte) < 2~~ with python3.12dist(yte) >= 1.5.1) /usr/bin/python3 python(abi) = 3.12 python3.12dist(appdirs) python3.12dist(configargparse) python3.12dist(connection-pool) >= 0.0.3 python3.12dist(datrie) python3.12dist(docutils) python3.12dist(gitpython) python3.12dist(humanfriendly) python3.12dist(jsonschema) python3.12dist(nbformat) python3.12dist(packaging) python3.12dist(psutil) python3.12dist(pulp) >= 2 python3.12dist(pyyaml) python3.12dist(requests) python3.12dist(reretry) python3.12dist(smart-open) >= 3 python3.12dist(stopit) python3.12dist(tabulate) python3.12dist(throttler) python3.12dist(toposort) >= 1.10 python3.12dist(wrapt) Processing files: snakemake-doc-7.32.4-3.fc40.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.0fpG0w + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + DOCDIR=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/doc/snakemake-doc + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/CODE_OF_CONDUCT.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/README.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/README-nano.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/README-vim.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/docs/_build/latex/Snakemake.pdf /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/doc/snakemake-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.nqyU2K + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + LICENSEDIR=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/licenses/snakemake-doc + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/licenses/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/LICENSE.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64/usr/share/licenses/snakemake-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: snakemake-doc = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: snakemake+reports-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake[reports]) = 7.32.4 python3dist(snakemake[reports]) = 7.32.4 snakemake+reports = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(pygments) Processing files: snakemake+messaging-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake[messaging]) = 7.32.4 python3dist(snakemake[messaging]) = 7.32.4 snakemake+messaging = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(slacker) Processing files: snakemake+google-cloud-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake[google-cloud]) = 7.32.4 python3dist(snakemake[google-cloud]) = 7.32.4 snakemake+google-cloud = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(google-api-python-client) python3.12dist(google-cloud-storage) python3.12dist(google-crc32c) python3.12dist(oauth2client) Processing files: snakemake+azure-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake[azure]) = 7.32.4 python3dist(snakemake[azure]) = 7.32.4 snakemake+azure = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(azure-batch) python3.12dist(azure-core) python3.12dist(azure-identity) python3.12dist(azure-mgmt-batch) python3.12dist(azure-storage-blob) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.src.rpm Wrote: /builddir/build/RPMS/snakemake+google-cloud-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+messaging-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+reports-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+azure-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake-doc-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake-7.32.4-3.fc40.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.hbygWE + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + /usr/bin/rm -rf /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.WeFDAC + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS + rm -rf snakemake-7.32.4 snakemake-7.32.4.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild snakemake-7.32.4-3.fc40.src.rpm Finish: build phase for snakemake-7.32.4-3.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-aarch64-1704460606.352452/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-aarch64-1704460606.352452/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-aarch64-1704460606.352452/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/snakemake-7.32.4-3.fc40.src.rpm) Config(child) 1 minutes 52 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "snakemake+reports", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake-doc", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "src" }, { "name": "snakemake+messaging", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake+azure", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake+google-cloud", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" } ] } RPMResults finished