Warning: Permanently added '54.237.248.13' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6866242-fedora-39-i386 --chroot fedora-39-i386 Version: 0.70 PID: 6029 Logging PID: 6030 Task: {'appstream': False, 'background': True, 'build_id': 6866242, 'buildroot_pkgs': [], 'chroot': 'fedora-39-i386', 'enable_net': False, 'fedora_review': False, 'git_hash': '10a9fbd1292724b11bb62d8f83b130912f28ed63', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.8.3/snakemake', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'snakemake', 'package_version': '7.32.4-3', 'project_dirname': 'scipy-1.8.3', 'project_name': 'scipy-1.8.3', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/scipy-1.8.3/fedora-39-i386/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/scipy-1.8.3--https://src.fedoraproject.org/user/music', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/music', 'tags': [], 'task_id': '6866242-fedora-39-i386', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.8.3/snakemake /var/lib/copr-rpmbuild/workspace/workdir-svxx422j/snakemake --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.8.3/snakemake', '/var/lib/copr-rpmbuild/workspace/workdir-svxx422j/snakemake', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-svxx422j/snakemake'... Running: git checkout 10a9fbd1292724b11bb62d8f83b130912f28ed63 -- cmd: ['git', 'checkout', '10a9fbd1292724b11bb62d8f83b130912f28ed63', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-svxx422j/snakemake rc: 0 stdout: stderr: Note: switching to '10a9fbd1292724b11bb62d8f83b130912f28ed63'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 10a9fbd automatic import of snakemake Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-svxx422j/snakemake rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading snakemake-7.32.4.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o snakemake-7.32.4.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/scipy-1.8.3/snakemake/snakemake-7.32.4.tar.gz/md5/2d7cd0faf40a8ca3c6e47f214536d1c9/snakemake-7.32.4.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 8677k 100 8677k 0 0 160M 0 --:--:-- --:--:-- --:--:-- 162M /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated INFO: Reading stdout from command: md5sum snakemake-7.32.4.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-svxx422j/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-svxx422j/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1704460536.002727 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.4 starting (python version = 3.11.3, NVR = mock-5.4-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-svxx422j/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-svxx422j/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1704460536.002727 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-svxx422j/snakemake/snakemake.spec) Config(fedora-39-i686) Start: clean chroot Finish: clean chroot Mock Version: 5.4 INFO: Mock Version: 5.4 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-i686-bootstrap-1704460536.002727/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:39 INFO: Pulling image: registry.fedoraproject.org/fedora:39 INFO: Copy content of container registry.fedoraproject.org/fedora:39 to /var/lib/mock/fedora-39-i686-bootstrap-1704460536.002727/root INFO: Checking that registry.fedoraproject.org/fedora:39 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:39 with podman image mount INFO: image registry.fedoraproject.org/fedora:39 as /var/lib/containers/storage/overlay/8ff7ad910417a7b8a49019008335921d2aac0e3304a19ce258deabf431e59801/merged INFO: umounting image registry.fedoraproject.org/fedora:39 (/var/lib/containers/storage/overlay/8ff7ad910417a7b8a49019008335921d2aac0e3304a19ce258deabf431e59801/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 28 MB/s | 1.4 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 188 MB/s | 71 MB 00:00 local 258 MB/s | 71 MB 00:00 Package python3-dnf-4.18.1-2.fc39.noarch is already installed. Dependencies resolved. ========================================================================================================================= Package Arch Version Repository Size ========================================================================================================================= Installing: python3-dnf-plugins-core noarch 4.4.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 302 k Upgrading: dnf noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 496 k dnf-data noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k python3-dnf noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 549 k yum noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k Installing dependencies: dbus-libs x86_64 1:1.14.10-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 155 k python3-dateutil noarch 1:2.8.2-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 345 k python3-dbus x86_64 1.3.2-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146 k python3-distro noarch 1.8.0-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44 k python3-six noarch 1.16.0-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python3-systemd x86_64 235-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101 k Transaction Summary ========================================================================================================================= Install 7 Packages Upgrade 4 Packages Total download size: 2.2 M Downloading Packages: (1/11): python3-dateutil-2.8.2-11.fc40.noarch.r 11 MB/s | 345 kB 00:00 (2/11): python3-dbus-1.3.2-4.fc39.x86_64.rpm 4.7 MB/s | 146 kB 00:00 (3/11): dbus-libs-1.14.10-1.fc40.x86_64.rpm 4.5 MB/s | 155 kB 00:00 (4/11): python3-distro-1.8.0-6.fc39.noarch.rpm 9.9 MB/s | 44 kB 00:00 (5/11): python3-dnf-plugins-core-4.4.4-1.fc40.n 36 MB/s | 302 kB 00:00 (6/11): python3-six-1.16.0-12.fc39.noarch.rpm 7.2 MB/s | 41 kB 00:00 (7/11): python3-systemd-235-5.fc39.x86_64.rpm 14 MB/s | 101 kB 00:00 (8/11): dnf-data-4.18.2-1.fc40.noarch.rpm 8.3 MB/s | 39 kB 00:00 (9/11): dnf-4.18.2-1.fc40.noarch.rpm 70 MB/s | 496 kB 00:00 (10/11): yum-4.18.2-1.fc40.noarch.rpm 7.5 MB/s | 37 kB 00:00 (11/11): python3-dnf-4.18.2-1.fc40.noarch.rpm 28 MB/s | 549 kB 00:00 -------------------------------------------------------------------------------- Total 35 MB/s | 2.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Upgrading : dnf-data-4.18.2-1.fc40.noarch 1/15 Upgrading : python3-dnf-4.18.2-1.fc40.noarch 2/15 Upgrading : dnf-4.18.2-1.fc40.noarch 3/15 Running scriptlet: dnf-4.18.2-1.fc40.noarch 3/15 Installing : python3-systemd-235-5.fc39.x86_64 4/15 Installing : python3-six-1.16.0-12.fc39.noarch 5/15 Installing : python3-dateutil-1:2.8.2-11.fc40.noarch 6/15 Installing : python3-distro-1.8.0-6.fc39.noarch 7/15 Installing : dbus-libs-1:1.14.10-1.fc40.x86_64 8/15 Installing : python3-dbus-1.3.2-4.fc39.x86_64 9/15 Installing : python3-dnf-plugins-core-4.4.4-1.fc40.noarch 10/15 Upgrading : yum-4.18.2-1.fc40.noarch 11/15 Cleanup : yum-4.18.1-2.fc39.noarch 12/15 Running scriptlet: dnf-4.18.1-2.fc39.noarch 13/15 Cleanup : dnf-4.18.1-2.fc39.noarch 13/15 Running scriptlet: dnf-4.18.1-2.fc39.noarch 13/15 Cleanup : python3-dnf-4.18.1-2.fc39.noarch 14/15 Cleanup : dnf-data-4.18.1-2.fc39.noarch 15/15 Running scriptlet: dnf-data-4.18.1-2.fc39.noarch 15/15 Verifying : dbus-libs-1:1.14.10-1.fc40.x86_64 1/15 Verifying : python3-dateutil-1:2.8.2-11.fc40.noarch 2/15 Verifying : python3-dbus-1.3.2-4.fc39.x86_64 3/15 Verifying : python3-distro-1.8.0-6.fc39.noarch 4/15 Verifying : python3-dnf-plugins-core-4.4.4-1.fc40.noarch 5/15 Verifying : python3-six-1.16.0-12.fc39.noarch 6/15 Verifying : python3-systemd-235-5.fc39.x86_64 7/15 Verifying : dnf-4.18.2-1.fc40.noarch 8/15 Verifying : dnf-4.18.1-2.fc39.noarch 9/15 Verifying : dnf-data-4.18.2-1.fc40.noarch 10/15 Verifying : dnf-data-4.18.1-2.fc39.noarch 11/15 Verifying : python3-dnf-4.18.2-1.fc40.noarch 12/15 Verifying : python3-dnf-4.18.1-2.fc39.noarch 13/15 Verifying : yum-4.18.2-1.fc40.noarch 14/15 Verifying : yum-4.18.1-2.fc39.noarch 15/15 Upgraded: dnf-4.18.2-1.fc40.noarch dnf-data-4.18.2-1.fc40.noarch python3-dnf-4.18.2-1.fc40.noarch yum-4.18.2-1.fc40.noarch Installed: dbus-libs-1:1.14.10-1.fc40.x86_64 python3-dateutil-1:2.8.2-11.fc40.noarch python3-dbus-1.3.2-4.fc39.x86_64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.4-1.fc40.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-i686-1704460536.002727/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.0-1.fc39.x86_64 rpm-sequoia-1.5.0-1.fc39.x86_64 python3-dnf-4.18.2-1.fc40.noarch python3-dnf-plugins-core-4.4.4-1.fc40.noarch yum-4.18.2-1.fc40.noarch Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 26 MB/s | 1.4 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 265 MB/s | 60 MB 00:00 local 119 MB/s | 61 MB 00:00 Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing group/module packages: bash i686 5.2.21-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M bzip2 i686 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53 k coreutils i686 9.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M cpio i686 2.14-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 278 k diffutils i686 3.10-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 394 k fedora-release noarch 40-0.26 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.7 k findutils i686 1:4.9.0-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492 k gawk i686 5.2.2-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 M glibc-minimal-langpack i686 2.38.9000-30.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 89 k grep i686 3.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 294 k gzip i686 1.12-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 158 k info i686 7.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 187 k patch i686 2.7.6-22.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 138 k redhat-rpm-config noarch 274-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 74 k rpm-build i686 4.19.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 72 k sed i686 4.8-14.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 300 k shadow-utils i686 2:4.14.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M tar i686 2:1.35-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 864 k unzip i686 6.0-62.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 180 k util-linux i686 2.39.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M which i686 2.21-40.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 42 k xz i686 5.4.5-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 535 k Installing dependencies: alternatives i686 1.25-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k ansible-srpm-macros noarch 1-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k audit-libs i686 3.1.2-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125 k authselect i686 1.4.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145 k authselect-libs i686 1.4.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 237 k basesystem noarch 11-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 k binutils i686 2.41-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.9 M binutils-gold i686 2.41-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 882 k bzip2-libs i686 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k ca-certificates noarch 2023.2.62_v7.0.401-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 863 k coreutils-common i686 9.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M cracklib i686 2.9.11-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83 k crypto-policies noarch 20231204-1.git1e3a2e4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 69 k curl i686 8.5.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 375 k cyrus-sasl-lib i686 2.1.28-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 857 k debugedit i686 5.0-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80 k dwz i686 0.15-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 139 k ed i686 1.19-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78 k efi-srpm-macros noarch 5-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22 k elfutils i686 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 568 k elfutils-debuginfod-client i686 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38 k elfutils-default-yama-scope noarch 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13 k elfutils-libelf i686 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 201 k elfutils-libs i686 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 290 k fedora-gpg-keys noarch 40-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 119 k fedora-release-common noarch 40-0.26 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20 k fedora-release-identity-basic noarch 40-0.26 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 k fedora-repos noarch 40-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.3 k fedora-repos-rawhide noarch 40-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.9 k file i686 5.45-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 49 k file-libs i686 5.45-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 770 k filesystem i686 3.18-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 26 k forge-srpm-macros noarch 0.2.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 18 k fpc-srpm-macros noarch 1.3-8.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.4 k gdb-minimal i686 14.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.6 M gdbm i686 1:1.23-4.fc39 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| 82 kB 00:00 (81/153): libpkgconf-1.9.5-2.fc39.i686.rpm 10 MB/s | 41 kB 00:00 (82/153): libpsl-0.21.2-4.fc39.i686.rpm 14 MB/s | 63 kB 00:00 (83/153): libselinux-3.6-2.fc40.i686.rpm 21 MB/s | 93 kB 00:00 (84/153): libpwquality-1.4.5-6.fc39.i686.rpm 19 MB/s | 109 kB 00:00 (85/153): libsemanage-3.6-1.fc40.i686.rpm 28 MB/s | 125 kB 00:00 (86/153): libsigsegv-2.14-5.fc39.i686.rpm 6.7 MB/s | 27 kB 00:00 (87/153): libsepol-3.6-1.fc40.i686.rpm 60 MB/s | 351 kB 00:00 (88/153): libsmartcols-2.39.3-1.fc40.i686.rpm 17 MB/s | 69 kB 00:00 (89/153): libssh-0.10.6-2.fc40.i686.rpm 46 MB/s | 227 kB 00:00 (90/153): libssh-config-0.10.6-2.fc40.noarch.rp 2.1 MB/s | 9.1 kB 00:00 (91/153): libstdc++-13.2.1-6.fc40.i686.rpm 111 MB/s | 931 kB 00:00 (92/153): libtasn1-4.19.0-3.fc39.i686.rpm 12 MB/s | 75 kB 00:00 (93/153): libtirpc-1.3.4-1.rc1.fc40.i686.rpm 16 MB/s | 102 kB 00:00 (94/153): libutempter-1.2.1-10.fc39.i686.rpm 6.4 MB/s | 27 kB 00:00 (95/153): libuuid-2.39.3-1.fc40.i686.rpm 6.2 MB/s | 29 kB 00:00 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(111/153): p11-kit-trust-0.25.3-1.fc40.i686.rpm 24 MB/s | 140 kB 00:00 (112/153): package-notes-srpm-macros-0.5-9.fc39 2.7 MB/s | 11 kB 00:00 (113/153): openssl-libs-3.1.4-1.fc40.i686.rpm 143 MB/s | 2.1 MB 00:00 (114/153): pam-1.5.3-9.fc40.i686.rpm 80 MB/s | 527 kB 00:00 (115/153): pam-libs-1.5.3-9.fc40.i686.rpm 10 MB/s | 60 kB 00:00 (116/153): patch-2.7.6-22.fc39.i686.rpm 29 MB/s | 138 kB 00:00 (117/153): pcre2-10.42-2.fc40.i686.rpm 45 MB/s | 231 kB 00:00 (118/153): pcre2-syntax-10.42-2.fc40.noarch.rpm 28 MB/s | 143 kB 00:00 (119/153): perl-srpm-macros-1-51.fc39.noarch.rp 2.0 MB/s | 8.0 kB 00:00 (120/153): pkgconf-1.9.5-2.fc39.i686.rpm 10 MB/s | 43 kB 00:00 (121/153): pkgconf-m4-1.9.5-2.fc39.noarch.rpm 3.7 MB/s | 14 kB 00:00 (122/153): pkgconf-pkg-config-1.9.5-2.fc39.i686 2.5 MB/s | 9.6 kB 00:00 (123/153): popt-1.19-3.fc39.i686.rpm 15 MB/s | 62 kB 00:00 (124/153): publicsuffix-list-dafsa-20230812-1.f 14 MB/s | 57 kB 00:00 (125/153): pyproject-srpm-macros-1.11.0-1.fc40. 3.4 MB/s | 15 kB 00:00 (126/153): qt6-srpm-macros-6.6.1-3.fc40.noarch. 2.2 MB/s | 8.8 kB 00:00 (127/153): python-srpm-macros-3.12-5.fc40.noarc 5.0 MB/s | 25 kB 00:00 (128/153): qt5-srpm-macros-5.15.12-1.fc40.noarc 1.7 MB/s | 8.4 kB 00:00 (129/153): redhat-rpm-config-274-1.fc40.noarch. 16 MB/s | 74 kB 00:00 (130/153): readline-8.2-4.fc39.i686.rpm 35 MB/s | 218 kB 00:00 (131/153): rpm-4.19.1-2.fc40.i686.rpm 72 MB/s | 506 kB 00:00 (132/153): rpm-build-4.19.1-2.fc40.i686.rpm 15 MB/s | 72 kB 00:00 (133/153): rpm-build-libs-4.19.1-2.fc40.i686.rp 23 MB/s | 102 kB 00:00 (134/153): rpm-libs-4.19.1-2.fc40.i686.rpm 62 MB/s | 341 kB 00:00 (135/153): rust-srpm-macros-25.2-2.fc40.noarch. 2.9 MB/s | 13 kB 00:00 (136/153): rpm-sequoia-1.5.0-2.fc40.i686.rpm 103 MB/s | 945 kB 00:00 (137/153): sed-4.8-14.fc39.i686.rpm 43 MB/s | 300 kB 00:00 (138/153): setup-2.14.5-1.fc40.noarch.rpm 29 MB/s | 148 kB 00:00 (139/153): sqlite-libs-3.44.2-1.fc40.i686.rpm 78 MB/s | 733 kB 00:00 (140/153): systemd-libs-255.1-1.fc40.i686.rpm 79 MB/s | 744 kB 00:00 (141/153): shadow-utils-4.14.0-2.fc40.i686.rpm 102 MB/s | 1.2 MB 00:00 (142/153): unzip-6.0-62.fc39.i686.rpm 32 MB/s | 180 kB 00:00 (143/153): tar-1.35-2.fc40.i686.rpm 107 MB/s | 864 kB 00:00 (144/153): util-linux-2.39.3-1.fc40.i686.rpm 115 MB/s | 1.1 MB 00:00 (145/153): util-linux-core-2.39.3-1.fc40.i686.r 60 MB/s | 506 kB 00:00 (146/153): which-2.21-40.fc39.i686.rpm 7.0 MB/s | 42 kB 00:00 (147/153): xxhash-libs-0.8.2-1.fc39.i686.rpm 10 MB/s | 49 kB 00:00 (148/153): zig-srpm-macros-1-1.fc40.noarch.rpm 1.9 MB/s | 8.0 kB 00:00 (149/153): xz-5.4.5-1.fc40.i686.rpm 82 MB/s | 535 kB 00:00 (150/153): xz-libs-5.4.5-1.fc40.i686.rpm 18 MB/s | 118 kB 00:00 (151/153): zip-3.0-39.fc40.i686.rpm 45 MB/s | 267 kB 00:00 (152/153): zlib-ng-compat-2.1.5-1.fc40.i686.rpm 15 MB/s | 81 kB 00:00 (153/153): zstd-1.5.5-4.fc39.i686.rpm 72 MB/s | 451 kB 00:00 -------------------------------------------------------------------------------- Total 129 MB/s | 53 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.i686 1/1 Preparing : 1/1 Installing : crypto-policies-20231204-1.git1e3a2e4.fc40.noarc 1/153 Running scriptlet: crypto-policies-20231204-1.git1e3a2e4.fc40.noarc 1/153 Installing : fedora-release-identity-basic-40-0.26.noarch 2/153 Installing : fedora-repos-rawhide-40-0.2.noarch 3/153 Installing : fedora-gpg-keys-40-0.2.noarch 4/153 Installing : fedora-repos-40-0.2.noarch 5/153 Installing : fedora-release-common-40-0.26.noarch 6/153 Installing : fedora-release-40-0.26.noarch 7/153 Installing : setup-2.14.5-1.fc40.noarch 8/153 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.5-1.fc40.noarch 8/153 Installing : filesystem-3.18-6.fc39.i686 9/153 Installing : basesystem-11-18.fc39.noarch 10/153 Installing : rust-srpm-macros-25.2-2.fc40.noarch 11/153 Installing : qt6-srpm-macros-6.6.1-3.fc40.noarch 12/153 Installing : qt5-srpm-macros-5.15.12-1.fc40.noarch 13/153 Installing : publicsuffix-list-dafsa-20230812-1.fc40.noarch 14/153 Installing : pkgconf-m4-1.9.5-2.fc39.noarch 15/153 Installing : perl-srpm-macros-1-51.fc39.noarch 16/153 Installing : pcre2-syntax-10.42-2.fc40.noarch 17/153 Installing : package-notes-srpm-macros-0.5-9.fc39.noarch 18/153 Installing : openblas-srpm-macros-2-14.fc39.noarch 19/153 Installing : ocaml-srpm-macros-9-1.fc40.noarch 20/153 Installing : ncurses-base-6.4-8.20231001.fc40.noarch 21/153 Installing : libssh-config-0.10.6-2.fc40.noarch 22/153 Installing : kernel-srpm-macros-1.0-20.fc39.noarch 23/153 Installing : gnat-srpm-macros-6-3.fc39.noarch 24/153 Installing : ghc-srpm-macros-1.6.1-3.fc40.noarch 25/153 Installing : fpc-srpm-macros-1.3-8.fc39.noarch 26/153 Installing : coreutils-common-9.4-1.fc40.i686 27/153 Installing : ansible-srpm-macros-1-11.fc39.noarch 28/153 Installing : libgcc-13.2.1-6.fc40.i686 29/153 Running scriptlet: libgcc-13.2.1-6.fc40.i686 29/153 Installing : glibc-gconv-extra-2.38.9000-30.fc40.i686 30/153 Running 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gmp-1:6.2.1-5.fc39.i686 46/153 Installing : libattr-2.5.1-9.fc40.i686 47/153 Installing : libacl-2.3.1-11.fc40.i686 48/153 Installing : libxcrypt-4.4.36-3.fc40.i686 49/153 Installing : gdbm-libs-1:1.23-4.fc39.i686 50/153 Installing : libeconf-0.5.2-1.fc40.i686 51/153 Installing : lz4-libs-1.9.4-4.fc39.i686 52/153 Installing : mpfr-4.2.1-1.fc40.i686 53/153 Installing : dwz-0.15-3.fc39.i686 54/153 Installing : unzip-6.0-62.fc39.i686 55/153 Installing : file-libs-5.45-1.fc40.i686 56/153 Installing : file-5.45-1.fc40.i686 57/153 Installing : alternatives-1.25-1.fc39.i686 58/153 Installing : jansson-2.13.1-7.fc39.i686 59/153 Installing : libcap-ng-0.8.4-2.fc40.i686 60/153 Installing : audit-libs-3.1.2-5.fc40.i686 61/153 Installing : pam-libs-1.5.3-9.fc40.i686 62/153 Installing : libcap-2.69-1.fc40.i686 63/153 Installing : systemd-libs-255.1-1.fc40.i686 64/153 Installing : libcom_err-1.47.0-2.fc39.i686 65/153 Installing : libsepol-3.6-1.fc40.i686 66/153 Installing : libsmartcols-2.39.3-1.fc40.i686 67/153 Installing : libtasn1-4.19.0-3.fc39.i686 68/153 Installing : libunistring-1.1-5.fc40.i686 69/153 Installing : libidn2-2.3.4-3.fc39.i686 70/153 Installing : lua-libs-5.4.6-3.fc39.i686 71/153 Installing : pcre2-10.42-2.fc40.i686 72/153 Installing : elfutils-default-yama-scope-0.190-4.fc40.noarch 73/153 Running scriptlet: elfutils-default-yama-scope-0.190-4.fc40.noarch 73/153 Installing : libselinux-3.6-2.fc40.i686 74/153 Installing : sed-4.8-14.fc39.i686 75/153 Installing : grep-3.11-5.fc40.i686 76/153 Installing : findutils-1:4.9.0-6.fc40.i686 77/153 Installing : xz-5.4.5-1.fc40.i686 78/153 Installing : libmount-2.39.3-1.fc40.i686 79/153 Installing : util-linux-core-2.39.3-1.fc40.i686 80/153 Installing : libsemanage-3.6-1.fc40.i686 81/153 Installing : shadow-utils-2:4.14.0-2.fc40.i686 82/153 Running scriptlet: libutempter-1.2.1-10.fc39.i686 83/153 Installing : libutempter-1.2.1-10.fc39.i686 83/153 Installing : tar-2:1.35-2.fc40.i686 84/153 Installing : libpsl-0.21.2-4.fc39.i686 85/153 Installing : zip-3.0-39.fc40.i686 86/153 Installing : zstd-1.5.5-4.fc39.i686 87/153 Installing : cyrus-sasl-lib-2.1.28-11.fc39.i686 88/153 Installing : gdbm-1:1.23-4.fc39.i686 89/153 Installing : libfdisk-2.39.3-1.fc40.i686 90/153 Installing : bzip2-1.0.8-16.fc39.i686 91/153 Installing : libxml2-2.12.3-1.fc40.i686 92/153 Installing : sqlite-libs-3.44.2-1.fc40.i686 93/153 Installing : ed-1.19-4.fc39.i686 94/153 Installing : patch-2.7.6-22.fc39.i686 95/153 Installing : cpio-2.14-5.fc40.i686 96/153 Installing : diffutils-3.10-3.fc39.i686 97/153 Installing : keyutils-libs-1.6.3-1.fc40.i686 98/153 Installing : libbrotli-1.1.0-1.fc40.i686 99/153 Installing : libffi-3.4.4-5.fc40.i686 100/153 Installing : p11-kit-0.25.3-1.fc40.i686 101/153 Installing : p11-kit-trust-0.25.3-1.fc40.i686 102/153 Running scriptlet: p11-kit-trust-0.25.3-1.fc40.i686 102/153 Installing : openssl-libs-1:3.1.4-1.fc40.i686 103/153 Installing : coreutils-9.4-1.fc40.i686 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pkgconf-pkg-config-1.9.5-2.fc39.i686 120/153 Installing : libsigsegv-2.14-5.fc39.i686 121/153 Installing : gawk-5.2.2-2.fc39.i686 122/153 Installing : libverto-0.3.2-6.fc39.i686 123/153 Installing : krb5-libs-1.21.2-2.fc40.i686 124/153 Installing : libtirpc-1.3.4-1.rc1.fc40.i686 125/153 Installing : libnsl2-2.0.0-6.fc39.i686 126/153 Installing : pam-1.5.3-9.fc40.i686 127/153 Installing : libssh-0.10.6-2.fc40.i686 128/153 Installing : libcurl-8.5.0-1.fc40.i686 129/153 Installing : elfutils-libs-0.190-4.fc40.i686 130/153 Installing : elfutils-debuginfod-client-0.190-4.fc40.i686 131/153 Installing : binutils-gold-2.41-20.fc40.i686 132/153 Running scriptlet: binutils-gold-2.41-20.fc40.i686 132/153 Installing : binutils-2.41-20.fc40.i686 133/153 Running scriptlet: binutils-2.41-20.fc40.i686 133/153 Installing : elfutils-0.190-4.fc40.i686 134/153 Installing : rpm-build-libs-4.19.1-2.fc40.i686 135/153 Installing : curl-8.5.0-1.fc40.i686 136/153 Running scriptlet: rpm-4.19.1-2.fc40.i686 137/153 Installing : rpm-4.19.1-2.fc40.i686 137/153 Installing : efi-srpm-macros-5-9.fc39.noarch 138/153 Installing : lua-srpm-macros-1-9.fc39.noarch 139/153 Installing : zig-srpm-macros-1-1.fc40.noarch 140/153 Installing : xxhash-libs-0.8.2-1.fc39.i686 141/153 Installing : gdb-minimal-14.1-1.fc40.i686 142/153 Installing : debugedit-5.0-12.fc40.i686 143/153 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 144/153 Installing : forge-srpm-macros-0.2.0-1.fc40.noarch 145/153 Installing : go-srpm-macros-3.3.1-1.fc40.noarch 146/153 Installing : python-srpm-macros-3.12-5.fc40.noarch 147/153 Installing : redhat-rpm-config-274-1.fc40.noarch 148/153 Installing : rpm-build-4.19.1-2.fc40.i686 149/153 Installing : pyproject-srpm-macros-1.11.0-1.fc40.noarch 150/153 Installing : util-linux-2.39.3-1.fc40.i686 151/153 Installing : which-2.21-40.fc39.i686 152/153 Installing : info-7.1-1.fc40.i686 153/153 Running scriptlet: filesystem-3.18-6.fc39.i686 153/153 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 153/153 Running scriptlet: authselect-libs-1.4.3-1.fc40.i686 153/153 Running scriptlet: rpm-4.19.1-2.fc40.i686 153/153 Running scriptlet: info-7.1-1.fc40.i686 153/153 Installed: alternatives-1.25-1.fc39.i686 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.i686 authselect-1.4.3-1.fc40.i686 authselect-libs-1.4.3-1.fc40.i686 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.i686 binutils-2.41-20.fc40.i686 binutils-gold-2.41-20.fc40.i686 bzip2-1.0.8-16.fc39.i686 bzip2-libs-1.0.8-16.fc39.i686 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.i686 coreutils-common-9.4-1.fc40.i686 cpio-2.14-5.fc40.i686 cracklib-2.9.11-2.fc39.i686 crypto-policies-20231204-1.git1e3a2e4.fc40.noarch curl-8.5.0-1.fc40.i686 cyrus-sasl-lib-2.1.28-11.fc39.i686 debugedit-5.0-12.fc40.i686 diffutils-3.10-3.fc39.i686 dwz-0.15-3.fc39.i686 ed-1.19-4.fc39.i686 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.i686 elfutils-debuginfod-client-0.190-4.fc40.i686 elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.i686 elfutils-libs-0.190-4.fc40.i686 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.26.noarch fedora-release-common-40-0.26.noarch fedora-release-identity-basic-40-0.26.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.i686 file-libs-5.45-1.fc40.i686 filesystem-3.18-6.fc39.i686 findutils-1:4.9.0-6.fc40.i686 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.i686 gdb-minimal-14.1-1.fc40.i686 gdbm-1:1.23-4.fc39.i686 gdbm-libs-1:1.23-4.fc39.i686 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-30.fc40.i686 glibc-common-2.38.9000-30.fc40.i686 glibc-gconv-extra-2.38.9000-30.fc40.i686 glibc-minimal-langpack-2.38.9000-30.fc40.i686 gmp-1:6.2.1-5.fc39.i686 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch grep-3.11-5.fc40.i686 gzip-1.12-6.fc39.i686 info-7.1-1.fc40.i686 jansson-2.13.1-7.fc39.i686 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc40.i686 krb5-libs-1.21.2-2.fc40.i686 libacl-2.3.1-11.fc40.i686 libarchive-3.7.2-1.fc40.i686 libattr-2.5.1-9.fc40.i686 libblkid-2.39.3-1.fc40.i686 libbrotli-1.1.0-1.fc40.i686 libcap-2.69-1.fc40.i686 libcap-ng-0.8.4-2.fc40.i686 libcom_err-1.47.0-2.fc39.i686 libcurl-8.5.0-1.fc40.i686 libeconf-0.5.2-1.fc40.i686 libevent-2.1.12-9.fc39.i686 libfdisk-2.39.3-1.fc40.i686 libffi-3.4.4-5.fc40.i686 libgcc-13.2.1-6.fc40.i686 libgomp-13.2.1-6.fc40.i686 libidn2-2.3.4-3.fc39.i686 libmount-2.39.3-1.fc40.i686 libnghttp2-1.58.0-1.fc40.i686 libnsl2-2.0.0-6.fc39.i686 libpkgconf-1.9.5-2.fc39.i686 libpsl-0.21.2-4.fc39.i686 libpwquality-1.4.5-6.fc39.i686 libselinux-3.6-2.fc40.i686 libsemanage-3.6-1.fc40.i686 libsepol-3.6-1.fc40.i686 libsigsegv-2.14-5.fc39.i686 libsmartcols-2.39.3-1.fc40.i686 libssh-0.10.6-2.fc40.i686 libssh-config-0.10.6-2.fc40.noarch libstdc++-13.2.1-6.fc40.i686 libtasn1-4.19.0-3.fc39.i686 libtirpc-1.3.4-1.rc1.fc40.i686 libunistring-1.1-5.fc40.i686 libutempter-1.2.1-10.fc39.i686 libuuid-2.39.3-1.fc40.i686 libverto-0.3.2-6.fc39.i686 libxcrypt-4.4.36-3.fc40.i686 libxml2-2.12.3-1.fc40.i686 libzstd-1.5.5-4.fc39.i686 lua-libs-5.4.6-3.fc39.i686 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.i686 mpfr-4.2.1-1.fc40.i686 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.i686 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.i686 openssl-libs-1:3.1.4-1.fc40.i686 p11-kit-0.25.3-1.fc40.i686 p11-kit-trust-0.25.3-1.fc40.i686 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-9.fc40.i686 pam-libs-1.5.3-9.fc40.i686 patch-2.7.6-22.fc39.i686 pcre2-10.42-2.fc40.i686 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.i686 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.i686 popt-1.19-3.fc39.i686 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.11.0-1.fc40.noarch python-srpm-macros-3.12-5.fc40.noarch qt5-srpm-macros-5.15.12-1.fc40.noarch qt6-srpm-macros-6.6.1-3.fc40.noarch readline-8.2-4.fc39.i686 redhat-rpm-config-274-1.fc40.noarch rpm-4.19.1-2.fc40.i686 rpm-build-4.19.1-2.fc40.i686 rpm-build-libs-4.19.1-2.fc40.i686 rpm-libs-4.19.1-2.fc40.i686 rpm-sequoia-1.5.0-2.fc40.i686 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.i686 setup-2.14.5-1.fc40.noarch shadow-utils-2:4.14.0-2.fc40.i686 sqlite-libs-3.44.2-1.fc40.i686 systemd-libs-255.1-1.fc40.i686 tar-2:1.35-2.fc40.i686 unzip-6.0-62.fc39.i686 util-linux-2.39.3-1.fc40.i686 util-linux-core-2.39.3-1.fc40.i686 which-2.21-40.fc39.i686 xxhash-libs-0.8.2-1.fc39.i686 xz-5.4.5-1.fc40.i686 xz-libs-5.4.5-1.fc40.i686 zig-srpm-macros-1-1.fc40.noarch zip-3.0-39.fc40.i686 zlib-ng-compat-2.1.5-1.fc40.i686 zstd-1.5.5-4.fc39.i686 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.i686 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.i686 authselect-1.4.3-1.fc40.i686 authselect-libs-1.4.3-1.fc40.i686 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.i686 binutils-2.41-20.fc40.i686 binutils-gold-2.41-20.fc40.i686 bzip2-1.0.8-16.fc39.i686 bzip2-libs-1.0.8-16.fc39.i686 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.i686 coreutils-common-9.4-1.fc40.i686 cpio-2.14-5.fc40.i686 cracklib-2.9.11-2.fc39.i686 crypto-policies-20231204-1.git1e3a2e4.fc40.noarch curl-8.5.0-1.fc40.i686 cyrus-sasl-lib-2.1.28-11.fc39.i686 debugedit-5.0-12.fc40.i686 diffutils-3.10-3.fc39.i686 dwz-0.15-3.fc39.i686 ed-1.19-4.fc39.i686 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.i686 elfutils-debuginfod-client-0.190-4.fc40.i686 elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.i686 elfutils-libs-0.190-4.fc40.i686 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.26.noarch fedora-release-common-40-0.26.noarch fedora-release-identity-basic-40-0.26.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.i686 file-libs-5.45-1.fc40.i686 filesystem-3.18-6.fc39.i686 findutils-4.9.0-6.fc40.i686 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.i686 gdb-minimal-14.1-1.fc40.i686 gdbm-1.23-4.fc39.i686 gdbm-libs-1.23-4.fc39.i686 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-30.fc40.i686 glibc-common-2.38.9000-30.fc40.i686 glibc-gconv-extra-2.38.9000-30.fc40.i686 glibc-minimal-langpack-2.38.9000-30.fc40.i686 gmp-6.2.1-5.fc39.i686 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch grep-3.11-5.fc40.i686 gzip-1.12-6.fc39.i686 info-7.1-1.fc40.i686 jansson-2.13.1-7.fc39.i686 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc40.i686 krb5-libs-1.21.2-2.fc40.i686 libacl-2.3.1-11.fc40.i686 libarchive-3.7.2-1.fc40.i686 libattr-2.5.1-9.fc40.i686 libblkid-2.39.3-1.fc40.i686 libbrotli-1.1.0-1.fc40.i686 libcap-2.69-1.fc40.i686 libcap-ng-0.8.4-2.fc40.i686 libcom_err-1.47.0-2.fc39.i686 libcurl-8.5.0-1.fc40.i686 libeconf-0.5.2-1.fc40.i686 libevent-2.1.12-9.fc39.i686 libfdisk-2.39.3-1.fc40.i686 libffi-3.4.4-5.fc40.i686 libgcc-13.2.1-6.fc40.i686 libgomp-13.2.1-6.fc40.i686 libidn2-2.3.4-3.fc39.i686 libmount-2.39.3-1.fc40.i686 libnghttp2-1.58.0-1.fc40.i686 libnsl2-2.0.0-6.fc39.i686 libpkgconf-1.9.5-2.fc39.i686 libpsl-0.21.2-4.fc39.i686 libpwquality-1.4.5-6.fc39.i686 libselinux-3.6-2.fc40.i686 libsemanage-3.6-1.fc40.i686 libsepol-3.6-1.fc40.i686 libsigsegv-2.14-5.fc39.i686 libsmartcols-2.39.3-1.fc40.i686 libssh-0.10.6-2.fc40.i686 libssh-config-0.10.6-2.fc40.noarch libstdc++-13.2.1-6.fc40.i686 libtasn1-4.19.0-3.fc39.i686 libtirpc-1.3.4-1.rc1.fc40.i686 libunistring-1.1-5.fc40.i686 libutempter-1.2.1-10.fc39.i686 libuuid-2.39.3-1.fc40.i686 libverto-0.3.2-6.fc39.i686 libxcrypt-4.4.36-3.fc40.i686 libxml2-2.12.3-1.fc40.i686 libzstd-1.5.5-4.fc39.i686 lua-libs-5.4.6-3.fc39.i686 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.i686 mpfr-4.2.1-1.fc40.i686 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.i686 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.i686 openssl-libs-3.1.4-1.fc40.i686 p11-kit-0.25.3-1.fc40.i686 p11-kit-trust-0.25.3-1.fc40.i686 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-9.fc40.i686 pam-libs-1.5.3-9.fc40.i686 patch-2.7.6-22.fc39.i686 pcre2-10.42-2.fc40.i686 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.i686 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.i686 popt-1.19-3.fc39.i686 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.11.0-1.fc40.noarch python-srpm-macros-3.12-5.fc40.noarch qt5-srpm-macros-5.15.12-1.fc40.noarch qt6-srpm-macros-6.6.1-3.fc40.noarch readline-8.2-4.fc39.i686 redhat-rpm-config-274-1.fc40.noarch rpm-4.19.1-2.fc40.i686 rpm-build-4.19.1-2.fc40.i686 rpm-build-libs-4.19.1-2.fc40.i686 rpm-libs-4.19.1-2.fc40.i686 rpm-sequoia-1.5.0-2.fc40.i686 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.i686 setup-2.14.5-1.fc40.noarch shadow-utils-4.14.0-2.fc40.i686 sqlite-libs-3.44.2-1.fc40.i686 systemd-libs-255.1-1.fc40.i686 tar-1.35-2.fc40.i686 unzip-6.0-62.fc39.i686 util-linux-2.39.3-1.fc40.i686 util-linux-core-2.39.3-1.fc40.i686 which-2.21-40.fc39.i686 xxhash-libs-0.8.2-1.fc39.i686 xz-5.4.5-1.fc40.i686 xz-libs-5.4.5-1.fc40.i686 zig-srpm-macros-1-1.fc40.noarch zip-3.0-39.fc40.i686 zlib-ng-compat-2.1.5-1.fc40.i686 zstd-1.5.5-4.fc39.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1704412800 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-i686-1704460536.002727/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-i686-1704460536.002727/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-i686-1704460536.002727/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-svxx422j/snakemake/snakemake.spec) Config(child) 1 minutes 13 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/snakemake-7.32.4-3.fc40.src.rpm) Config(fedora-39-i686) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-i686-bootstrap-1704460536.002727/root. INFO: reusing tmpfs at /var/lib/mock/fedora-39-i686-bootstrap-1704460536.002727/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-i686-1704460536.002727/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.0-1.fc39.x86_64 rpm-sequoia-1.5.0-1.fc39.x86_64 python3-dnf-4.18.2-1.fc40.noarch python3-dnf-plugins-core-4.4.4-1.fc40.noarch yum-4.18.2-1.fc40.noarch Finish: chroot init Start: build phase for snakemake-7.32.4-3.fc40.src.rpm Start: build setup for snakemake-7.32.4-3.fc40.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1704412800 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 53 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 192 kB/s | 3.8 kB 00:00 local 206 kB/s | 3.8 kB 00:00 Dependencies resolved. ======================================================================================================================================================= Package Arch Version Repository Size ======================================================================================================================================================= Installing: help2man noarch 1.49.3-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 217 k latexmk noarch 4.82-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 421 k librsvg2-tools i686 2.57.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 M make i686 1:4.4.1-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 589 k python3-boto3 noarch 1.34.12-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 338 k python3-configargparse noarch 1.7-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 52 k python3-devel i686 3.12.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 274 k python3-pandas i686 1.5.3-7.fc39~bootstrap copr_base 7.1 M python3-pytest noarch 7.4.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M python3-requests-mock noarch 1.10.0-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53 k python3-sphinx-latex noarch 1:7.2.6-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 k texlive-xetex i686 11:svn66203-77.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M texlive-xindy i686 11:svn65958-77.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 M vim-filesystem noarch 2:9.0.2190-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 18 k Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-10.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121 k adobe-mappings-cmap noarch 20230622-1.fc39 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97 kB 00:00 (2/668): python3-pandas-1.5.3-7.fc39~bootstrap. 149 MB/s | 7.1 MB 00:00 (3/668): libsvm-3.32-2.fc39.i686.rpm 6.4 MB/s | 334 kB 00:00 (4/668): abattis-cantarell-vf-fonts-0.301-10.fc 4.5 MB/s | 121 kB 00:00 (5/668): adobe-mappings-pdf-20190401-5.fc39.noa 49 MB/s | 689 kB 00:00 (6/668): adobe-mappings-cmap-deprecated-2023062 4.9 MB/s | 113 kB 00:00 (7/668): at-spi2-core-2.50.0-1.fc40.i686.rpm 45 MB/s | 358 kB 00:00 (8/668): atk-2.50.0-1.fc40.i686.rpm 10 MB/s | 82 kB 00:00 (9/668): avahi-libs-0.8-24.fc39.i686.rpm 10 MB/s | 73 kB 00:00 (10/668): adobe-mappings-cmap-20230622-1.fc39.n 51 MB/s | 2.1 MB 00:00 (11/668): biber-2.19-3.fc39.noarch.rpm 28 MB/s | 280 kB 00:00 (12/668): cairo-gobject-1.18.0-1.fc40.i686.rpm 3.6 MB/s | 17 kB 00:00 (13/668): cairo-1.18.0-1.fc40.i686.rpm 60 MB/s | 755 kB 00:00 (14/668): cups-libs-2.4.7-6.fc40.i686.rpm 34 MB/s | 285 kB 00:00 (15/668): dbus-1.14.10-1.fc40.i686.rpm 1.3 MB/s | 8.1 kB 00:00 (16/668): dbus-common-1.14.10-1.fc40.noarch.rpm 3.1 MB/s | 15 kB 00:00 (17/668): dbus-broker-35-2.fc40.i686.rpm 21 MB/s | 183 kB 00:00 (18/668): dbus-libs-1.14.10-1.fc40.i686.rpm 30 MB/s | 167 kB 00:00 (19/668): default-fonts-core-sans-4.0-9.fc40.no 4.6 MB/s | 25 kB 00:00 (20/668): emacs-filesystem-29.1-14.fc40.noarch. 1.9 MB/s | 7.4 kB 00:00 (21/668): desktop-file-utils-0.26-9.fc39.i686.r 12 MB/s | 71 kB 00:00 (22/668): expat-2.5.0-3.fc39.i686.rpm 20 MB/s | 114 kB 00:00 (23/668): fcgi-2.4.0-47.fc39.i686.rpm 6.9 MB/s | 47 kB 00:00 (24/668): clisp-2.49.93-35.20230718git6692497.f 126 MB/s | 6.1 MB 00:00 (25/668): ffcall-2.4-6.fc39.i686.rpm 4.2 MB/s | 36 kB 00:00 (26/668): flexiblas-3.3.1-5.fc39.i686.rpm 3.3 MB/s | 33 kB 00:00 (27/668): flexiblas-openblas-openmp-3.3.1-5.fc3 2.7 MB/s | 17 kB 00:00 (28/668): fontconfig-2.15.0-1.fc40.i686.rpm 52 MB/s | 265 kB 00:00 (29/668): fonts-filesystem-2.0.5-12.fc39.noarch 2.0 MB/s | 8.2 kB 00:00 (30/668): freetype-2.13.1-2.fc39.i686.rpm 57 MB/s | 419 kB 00:00 (31/668): fribidi-1.0.13-2.fc39.i686.rpm 16 MB/s | 92 kB 00:00 (32/668): flexiblas-netlib-3.3.1-5.fc39.i686.rp 146 MB/s | 3.1 MB 00:00 (33/668): gc-8.2.2-4.fc39.i686.rpm 18 MB/s | 113 kB 00:00 (34/668): gd-2.3.3-12.fc39.i686.rpm 15 MB/s | 145 kB 00:00 (35/668): gdk-pixbuf2-2.42.10-5.fc39.i686.rpm 60 MB/s | 470 kB 00:00 (36/668): gdk-pixbuf2-modules-2.42.10-5.fc39.i6 17 MB/s | 90 kB 00:00 (37/668): ghostscript-10.02.1-4.fc40.i686.rpm 5.3 MB/s | 32 kB 00:00 (38/668): ghostscript-tools-fonts-10.02.1-4.fc4 2.2 MB/s | 12 kB 00:00 (39/668): ghostscript-tools-printing-10.02.1-4. 2.1 MB/s | 13 kB 00:00 (40/668): giflib-5.2.1-17.fc40.i686.rpm 6.8 MB/s | 53 kB 00:00 (41/668): gnutls-3.8.2-2.fc40.i686.rpm 95 MB/s | 1.1 MB 00:00 (42/668): glib2-2.78.3-1.fc40.i686.rpm 172 MB/s | 2.9 MB 00:00 (43/668): google-noto-fonts-common-20230801-4.f 2.2 MB/s | 17 kB 00:00 (44/668): google-droid-sans-fonts-20200215-17.f 146 MB/s | 2.7 MB 00:00 (45/668): google-noto-sans-vf-fonts-20230801-4. 47 MB/s | 583 kB 00:00 (46/668): groff-base-1.23.0-3.fc40.i686.rpm 101 MB/s | 1.1 MB 00:00 (47/668): gtk-update-icon-cache-3.24.39-1.fc40. 5.1 MB/s | 34 kB 00:00 (48/668): gumbo-parser-0.10.1-29.fc39.i686.rpm 12 MB/s | 139 kB 00:00 (49/668): gtk2-2.24.33-15.fc39.i686.rpm 102 MB/s | 3.5 MB 00:00 (50/668): harfbuzz-8.3.0-2.fc40.i686.rpm 59 MB/s | 1.0 MB 00:00 (51/668): guile22-2.2.7-9.fc39.i686.rpm 156 MB/s | 6.5 MB 00:00 (52/668): help2man-1.49.3-3.fc39.noarch.rpm 25 MB/s | 217 kB 00:00 (53/668): hicolor-icon-theme-0.17-16.fc39.noarc 7.3 MB/s | 66 kB 00:00 (54/668): highway-1.0.7-1.fc40.i686.rpm 45 MB/s | 302 kB 00:00 (55/668): jbig2dec-libs-0.20-1.fc40.i686.rpm 10 MB/s | 76 kB 00:00 (56/668): hwdata-0.377-2.fc40.noarch.rpm 117 MB/s | 1.6 MB 00:00 (57/668): jbigkit-libs-2.1-27.fc40.i686.rpm 6.5 MB/s | 53 kB 00:00 (58/668): latexmk-4.82-1.fc40.noarch.rpm 46 MB/s | 421 kB 00:00 (59/668): lcms2-2.15-2.fc39.i686.rpm 35 MB/s | 193 kB 00:00 (60/668): libICE-1.1.1-1.fc40.i686.rpm 13 MB/s | 77 kB 00:00 (61/668): leptonica-1.84.1-1.fc40.i686.rpm 103 MB/s | 1.2 MB 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libXpm-3.5.17-1.fc40.i686.rpm 10 MB/s | 66 kB 00:00 (78/668): libXrandr-1.5.4-1.fc40.i686.rpm 5.4 MB/s | 29 kB 00:00 (79/668): libXrender-0.9.11-4.fc40.i686.rpm 6.7 MB/s | 29 kB 00:00 (80/668): libXt-1.3.0-1.fc40.i686.rpm 29 MB/s | 189 kB 00:00 (81/668): libXtst-1.2.4-4.fc40.i686.rpm 3.6 MB/s | 21 kB 00:00 (82/668): libXxf86vm-1.1.5-4.fc40.i686.rpm 3.6 MB/s | 19 kB 00:00 (83/668): libb2-0.98.1-9.fc39.i686.rpm 6.9 MB/s | 28 kB 00:00 (84/668): libavif-0.11.1-11.fc39.i686.rpm 14 MB/s | 88 kB 00:00 (85/668): libaom-3.8.0-1.fc40.i686.rpm 100 MB/s | 1.3 MB 00:00 (86/668): libdatrie-0.2.13-7.fc39.i686.rpm 4.0 MB/s | 33 kB 00:00 (87/668): libdav1d-1.2.1-2.fc39.i686.rpm 43 MB/s | 385 kB 00:00 (88/668): libdrm-2.4.117-1.fc40.i686.rpm 25 MB/s | 172 kB 00:00 (89/668): libdb-5.3.28-58.fc40.i686.rpm 65 MB/s | 822 kB 00:00 (90/668): libgfortran-13.2.1-6.fc40.i686.rpm 76 MB/s | 843 kB 00:00 (91/668): libglade2-2.6.4-30.fc39.i686.rpm 8.3 MB/s | 64 kB 00:00 (92/668): libglvnd-1.7.0-1.fc40.i686.rpm 18 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perl-Data-Uniqid-0.12-31.fc39.noarch 3.2 MB/s | 12 kB 00:00 (152/668): perl-Date-ISO8601-0.005-18.fc39.noar 4.4 MB/s | 19 kB 00:00 (153/668): perl-Date-Manip-6.93-2.fc40.noarch.r 125 MB/s | 1.0 MB 00:00 (154/668): perl-DateTime-1.65-1.fc40.i686.rpm 17 MB/s | 132 kB 00:00 (155/668): perl-DateTime-Calendar-Julian-0.107- 4.1 MB/s | 23 kB 00:00 (156/668): perl-DateTime-Format-Strptime-1.79-8 9.9 MB/s | 41 kB 00:00 (157/668): perl-DateTime-Format-Builder-0.8300- 7.2 MB/s | 83 kB 00:00 (158/668): perl-DateTime-TimeZone-2.61-1.fc40.n 49 MB/s | 342 kB 00:00 (159/668): perl-DateTime-Locale-1.40-1.fc40.noa 164 MB/s | 3.3 MB 00:00 (160/668): perl-DateTime-TimeZone-SystemV-0.010 2.6 MB/s | 22 kB 00:00 (161/668): perl-DateTime-TimeZone-Tzfile-0.011- 3.3 MB/s | 19 kB 00:00 (162/668): perl-Devel-Caller-2.07-3.fc39.i686.r 3.9 MB/s | 19 kB 00:00 (163/668): perl-Devel-CallChecker-0.009-3.fc39. 4.4 MB/s | 24 kB 00:00 (164/668): perl-Devel-GlobalDestruction-0.14-22 4.3 MB/s | 17 kB 00:00 (165/668): 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libglade2-2.6.4-30.fc39.i686 652/668 Installing : ffcall-2.4-6.fc39.i686 653/668 Installing : fcgi-2.4.0-47.fc39.i686 654/668 Installing : libsvm-3.32-2.fc39.i686 655/668 Installing : python3-sphinx-latex-1:7.2.6-4.fc40.noarch 656/668 Installing : latexmk-4.82-1.fc40.noarch 657/668 Installing : help2man-1.49.3-3.fc39.noarch 658/668 Installing : python3-pytest-7.4.3-1.fc40.noarch 659/668 Installing : python3-requests-mock-1.10.0-5.fc39.noarch 660/668 Installing : python3-devel-3.12.1-2.fc40.i686 661/668 Installing : python3-boto3-1.34.12-1.fc40.noarch 662/668 Installing : python3-configargparse-1.7-1.fc40.noarch 663/668 Installing : clisp-2.49.93-35.20230718git6692497.fc40.i686 664/668 Installing : texlive-xindy-11:svn65958-77.fc39.i686 665/668 Installing : librsvg2-tools-2.57.1-1.fc40.i686 666/668 Installing : make-1:4.4.1-2.fc39.i686 667/668 Installing : python3-pandas-1.5.3-7.fc39~bootstrap.i686 668/668 Running scriptlet: texlive-base-11:20230311-77.fc39.i686 668/668 Running scriptlet: urw-base35-bookman-fonts-20200910-18.fc39.noarch 668/668 Running scriptlet: urw-base35-c059-fonts-20200910-18.fc39.noarch 668/668 Running scriptlet: urw-base35-d050000l-fonts-20200910-18.fc39.noarc 668/668 Running scriptlet: urw-base35-gothic-fonts-20200910-18.fc39.noarch 668/668 Running scriptlet: urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39 668/668 Running scriptlet: urw-base35-nimbus-roman-fonts-20200910-18.fc39.n 668/668 Running scriptlet: urw-base35-nimbus-sans-fonts-20200910-18.fc39.no 668/668 Running scriptlet: urw-base35-p052-fonts-20200910-18.fc39.noarch 668/668 Running scriptlet: urw-base35-standard-symbols-ps-fonts-20200910-18 668/668 Running scriptlet: urw-base35-z003-fonts-20200910-18.fc39.noarch 668/668 Running scriptlet: fontconfig-2.15.0-1.fc40.i686 668/668 Running scriptlet: python3-pandas-1.5.3-7.fc39~bootstrap.i686 668/668 Installed: abattis-cantarell-vf-fonts-0.301-10.fc39.noarch adobe-mappings-cmap-20230622-1.fc39.noarch 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python3-jinja2-3.1.2-6.fc40.noarch python3-jmespath-1.0.1-4.fc39.noarch python3-libs-3.12.1-2.fc40.i686 python3-markupsafe-2.1.3-2.fc39.i686 python3-numpy-1:1.26.2-1.fc40.i686 python3-packaging-23.2-2.fc40.noarch python3-pandas-1.5.3-7.fc39~bootstrap.i686 python3-pluggy-1.3.0-1.fc40.noarch python3-pygments-2.17.2-1.fc40.noarch python3-pytest-7.4.3-1.fc40.noarch python3-pytz-2023.3.post1-1.fc40.noarch python3-requests-2.28.2-7.fc40.noarch python3-requests-mock-1.10.0-5.fc39.noarch python3-rpm-generators-14-8.fc40.noarch python3-rpm-macros-3.12-5.fc40.noarch python3-s3transfer-0.10.0-1.fc40.noarch python3-setuptools-68.2.2-1.fc40.noarch python3-six-1.16.0-12.fc39.noarch python3-snowballstemmer-2.2.0-7.fc39.noarch python3-sphinx-1:7.2.6-4.fc40.noarch python3-sphinx-latex-1:7.2.6-4.fc40.noarch python3-sphinx-theme-alabaster-0.7.13-2.fc40.noarch python3-urllib3-1.26.18-1.fc40.noarch rav1e-libs-0.6.6-4.fc40.i686 rsvg-pixbuf-loader-2.57.1-1.fc40.i686 shared-mime-info-2.3-2.fc40.i686 sombok-2.4.0-20.fc39.i686 svt-av1-libs-1.4.1-3.fc39.i686 teckit-2.5.12-1.fc40.i686 tesseract-5.3.3-1.fc40.i686 tesseract-langpack-eng-4.1.0-6.fc39.noarch tesseract-tessdata-doc-4.1.0-6.fc39.noarch texlive-ae-11:svn15878.1.4-70.fc40.noarch texlive-algorithms-11:svn42428-70.fc40.noarch texlive-alphalph-11:svn53087-70.fc40.noarch texlive-amscls-11:svn55378-70.fc40.noarch texlive-amsfonts-11:svn61937-70.fc40.noarch texlive-amsmath-11:svn63514-70.fc40.noarch texlive-anyfontsize-11:svn17050.0-70.fc40.noarch texlive-atbegshi-11:svn53051-70.fc40.noarch texlive-attachfile-11:svn42099-70.fc40.noarch texlive-atveryend-11:svn53108-70.fc40.noarch texlive-auto-pst-pdf-11:svn56596-70.fc40.noarch texlive-auxhook-11:svn53173-70.fc40.noarch texlive-avantgar-11:svn61983-70.fc40.noarch texlive-babel-11:svn65823-70.fc40.noarch texlive-babel-english-11:svn44495-70.fc40.noarch texlive-babelbib-11:svn57349-70.fc40.noarch texlive-base-11:20230311-77.fc39.i686 texlive-bera-11:svn20031.0-70.fc40.noarch texlive-beton-11:svn15878.0-70.fc40.noarch texlive-biblatex-11:svn66403-70.fc40.noarch texlive-bibtex-11:svn66186-77.fc39.i686 texlive-bidi-11:svn65572-70.fc40.noarch texlive-bigintcalc-11:svn53172-70.fc40.noarch texlive-bitset-11:svn53837-70.fc40.noarch texlive-bookman-11:svn61719-70.fc40.noarch texlive-bookmark-11:svn56885-70.fc40.noarch texlive-booktabs-11:svn53402-70.fc40.noarch texlive-breakurl-11:svn29901.1.40-70.fc40.noarch texlive-capt-of-11:svn29803.0-70.fc40.noarch texlive-caption-11:svn66580-70.fc40.noarch texlive-carlisle-11:svn59577-70.fc40.noarch texlive-catchfile-11:svn53084-70.fc40.noarch texlive-changepage-11:svn15878.1.0c-70.fc40.noarch texlive-charter-11:svn15878.0-70.fc40.noarch texlive-cm-11:svn57963-70.fc40.noarch texlive-cm-super-11:svn15878.0-70.fc40.noarch texlive-cmap-11:svn57640-70.fc40.noarch texlive-cmextra-11:svn57866-70.fc40.noarch texlive-collection-basic-11:svn59159-70.fc40.noarch texlive-collection-fontsrecommended-11:svn54074-70.fc40.noarch texlive-collection-latex-11:svn63515-70.fc40.noarch texlive-colorprofiles-11:svn49086-70.fc40.noarch texlive-colortbl-11:svn64015-70.fc40.noarch texlive-courier-11:svn61719-70.fc40.noarch texlive-csquotes-11:svn64389-70.fc40.noarch texlive-ctablestack-11:svn38514-70.fc40.noarch texlive-currfile-11:svn64673-70.fc40.noarch texlive-dehyph-11:svn48599-70.fc40.noarch texlive-dvipdfmx-11:svn66203-77.fc39.i686 texlive-dvipng-11:svn66203-77.fc39.i686 texlive-dvips-11:svn66203-77.fc39.i686 texlive-dvisvgm-11:svn66532-77.fc39.i686 texlive-ec-11:svn25033.1.0-70.fc40.noarch texlive-enctex-11:svn34957.0-70.fc40.noarch texlive-enumitem-11:svn51423-70.fc40.noarch texlive-epstopdf-11:svn66461-77.fc39.noarch texlive-epstopdf-pkg-11:svn53546-70.fc40.noarch texlive-eso-pic-11:svn56658-70.fc40.noarch texlive-etex-11:svn66203-70.fc40.noarch texlive-etex-pkg-11:svn41784-70.fc40.noarch texlive-etexcmds-11:svn53171-70.fc40.noarch texlive-etoolbox-11:svn56554-70.fc40.noarch texlive-euenc-11:svn19795.0.1h-70.fc40.noarch texlive-euler-11:svn42428-70.fc40.noarch texlive-euro-11:svn22191.1.1-70.fc40.noarch texlive-euro-ce-11:svn25714-70.fc40.noarch texlive-eurosym-11:svn17265.1.4_subrfix-70.fc40.noarch texlive-everyshi-11:svn57001-70.fc40.noarch texlive-fancyhdr-11:svn64977-70.fc40.noarch texlive-fancyvrb-11:svn65585-70.fc40.noarch texlive-filecontents-11:svn52142-70.fc40.noarch texlive-filehook-11:svn64822-70.fc40.noarch texlive-firstaid-11:svn64892-70.fc40.noarch texlive-fix2col-11:svn38770-70.fc40.noarch texlive-float-11:svn15878.1.3d-70.fc40.noarch texlive-fncychap-11:svn20710.v1.34-70.fc40.noarch texlive-fontspec-11:svn63386-70.fc40.noarch texlive-footmisc-11:svn62524-70.fc40.noarch texlive-fp-11:svn49719-70.fc40.noarch texlive-fpl-11:svn54512-70.fc40.noarch texlive-framed-11:svn26789.0.96-70.fc40.noarch texlive-geometry-11:svn61719-70.fc40.noarch texlive-gettitlestring-11:svn53170-70.fc40.noarch texlive-glyphlist-11:svn54074-77.fc39.noarch texlive-gnu-freefont-11:svn29349.0-70.fc40.noarch texlive-graphics-11:svn66204-70.fc40.noarch texlive-graphics-cfg-11:svn41448-70.fc40.noarch texlive-graphics-def-11:svn64487-70.fc40.noarch texlive-grfext-11:svn53024-70.fc40.noarch texlive-grffile-11:svn52756-70.fc40.noarch texlive-gsftopk-11:svn52851-77.fc39.i686 texlive-helvetic-11:svn61719-70.fc40.noarch texlive-hobsub-11:svn52810-70.fc40.noarch texlive-hologo-11:svn61719-70.fc40.noarch texlive-hopatch-11:svn65491-70.fc40.noarch texlive-hycolor-11:svn53584-70.fc40.noarch texlive-hypdoc-11:svn65678-70.fc40.noarch texlive-hyperref-11:svn65758-70.fc40.noarch texlive-hyph-utf8-11:svn61719-70.fc40.noarch texlive-hyphen-base-11:svn66413-70.fc40.noarch texlive-hyphenex-11:svn57387-70.fc40.noarch texlive-ifmtarg-11:svn47544-70.fc40.noarch texlive-ifplatform-11:svn45533-70.fc40.noarch texlive-iftex-11:svn61910-70.fc40.noarch texlive-index-11:svn24099.4.1beta-70.fc40.noarch texlive-infwarerr-11:svn53023-70.fc40.noarch texlive-intcalc-11:svn53168-70.fc40.noarch texlive-kastrup-11:svn15878.0-70.fc40.noarch texlive-knuth-lib-11:svn57963-70.fc40.noarch texlive-knuth-local-11:svn57963-70.fc40.noarch texlive-koma-script-11:svn64685-70.fc40.noarch texlive-kpathsea-11:svn66209-77.fc39.i686 texlive-kvdefinekeys-11:svn53193-70.fc40.noarch texlive-kvoptions-11:svn63622-70.fc40.noarch texlive-kvsetkeys-11:svn64632-70.fc40.noarch texlive-l3backend-11:svn65573-70.fc40.noarch texlive-l3kernel-11:svn66094-70.fc40.noarch texlive-l3packages-11:svn65722-70.fc40.noarch texlive-latex-11:svn65161-77.fc39.noarch texlive-latex-fonts-11:svn28888.0-70.fc40.noarch texlive-latex-lab-11:svn64892-70.fc40.noarch texlive-latexconfig-11:svn53525-70.fc40.noarch texlive-letltxmacro-11:svn53022-70.fc40.noarch texlive-lib-11:20230311-77.fc39.i686 texlive-listings-11:svn66222-70.fc40.noarch texlive-lm-11:svn65956-70.fc40.noarch texlive-lm-math-11:svn36915.1.959-70.fc40.noarch texlive-logreq-11:svn53003-70.fc40.noarch texlive-ltxcmds-11:svn56421-70.fc40.noarch texlive-ltxmisc-11:svn21927.0-70.fc40.noarch texlive-lua-alt-getopt-11:svn56414-70.fc40.noarch texlive-lua-uni-algos-11:svn62204-70.fc40.noarch texlive-luabidi-11:svn54512-70.fc40.noarch texlive-luahbtex-11:svn66186-77.fc39.i686 texlive-lualatex-math-11:svn61464-70.fc40.noarch texlive-lualibs-11:svn64615-70.fc40.noarch texlive-luaotfload-11:svn64616-77.fc39.noarch texlive-luatex-11:svn66967-77.fc39.i686 texlive-luatex85-11:svn41456-70.fc40.noarch texlive-luatexbase-11:svn52663-70.fc40.noarch texlive-makecmds-11:svn15878.0-70.fc40.noarch texlive-makeindex-11:svn62517-77.fc39.i686 texlive-manfnt-font-11:svn45777-70.fc40.noarch texlive-marginnote-11:svn48383-70.fc40.noarch texlive-marvosym-11:svn29349.2.2a-70.fc40.noarch texlive-mathpazo-11:svn52663-70.fc40.noarch texlive-memoir-11:svn65040-70.fc40.noarch texlive-metafont-11:svn66186-77.fc39.i686 texlive-mflogo-11:svn42428-70.fc40.noarch texlive-mflogo-font-11:svn54512-70.fc40.noarch texlive-mfnfss-11:svn46036-70.fc40.noarch texlive-mfware-11:svn66186-77.fc39.i686 texlive-minitoc-11:svn61719-70.fc40.noarch texlive-modes-11:svn61719-70.fc40.noarch texlive-mparhack-11:svn59066-70.fc40.noarch texlive-mptopdf-11:svn65952-77.fc39.noarch texlive-ms-11:svn57473-70.fc40.noarch texlive-multido-11:svn18302.1.42-70.fc40.noarch texlive-natbib-11:svn20668.8.31b-70.fc40.noarch texlive-ncntrsbk-11:svn61719-70.fc40.noarch texlive-needspace-11:svn29601.1.3d-70.fc40.noarch texlive-notoccite-11:svn18129.0-70.fc40.noarch texlive-oberdiek-11:svn65521-77.fc39.noarch texlive-pagesel-11:svn56105-70.fc40.noarch texlive-palatino-11:svn61719-70.fc40.noarch texlive-paralist-11:svn43021-70.fc40.noarch texlive-parallel-11:svn15878.0-70.fc40.noarch texlive-parskip-11:svn58358-70.fc40.noarch texlive-pdfcol-11:svn64469-70.fc40.noarch texlive-pdfcolmk-11:svn52912-70.fc40.noarch texlive-pdfescape-11:svn53082-70.fc40.noarch texlive-pdftex-11:svn66243-77.fc39.i686 texlive-pdftexcmds-11:svn55777-70.fc40.noarch texlive-pgf-11:svn65553-70.fc40.noarch texlive-picture-11:svn54867-70.fc40.noarch texlive-placeins-11:svn19848.2.2-70.fc40.noarch texlive-plain-11:svn57963-70.fc40.noarch texlive-polyglossia-11:svn65792-70.fc40.noarch texlive-pslatex-11:svn57434-70.fc40.noarch texlive-psnfss-11:svn54694-70.fc40.noarch texlive-pspicture-11:svn15878.0-70.fc40.noarch texlive-pst-3d-11:svn17257.1.10-70.fc40.noarch texlive-pst-coil-11:svn62977-70.fc40.noarch texlive-pst-eps-11:svn15878.1.0-70.fc40.noarch texlive-pst-fill-11:svn60671-70.fc40.noarch texlive-pst-grad-11:svn15878.1.06-70.fc40.noarch texlive-pst-math-11:svn64732-70.fc40.noarch texlive-pst-node-11:svn61838-70.fc40.noarch texlive-pst-ovl-11:svn54963-70.fc40.noarch texlive-pst-plot-11:svn65346-70.fc40.noarch texlive-pst-text-11:svn49542-70.fc40.noarch texlive-pst-tools-11:svn60621-70.fc40.noarch texlive-pst-tree-11:svn60421-70.fc40.noarch texlive-pstricks-11:svn65346-70.fc40.noarch texlive-pstricks-add-11:svn65067-70.fc40.noarch texlive-pxfonts-11:svn15878.0-70.fc40.noarch texlive-ragged2e-11:svn66152-70.fc40.noarch texlive-refcount-11:svn53164-70.fc40.noarch texlive-rerunfilecheck-11:svn63869-70.fc40.noarch texlive-rsfs-11:svn15878.0-70.fc40.noarch texlive-sauerj-11:svn15878.0-70.fc40.noarch texlive-setspace-11:svn65206-70.fc40.noarch texlive-showexpl-11:svn57414-70.fc40.noarch texlive-stringenc-11:svn52982-70.fc40.noarch texlive-subfig-11:svn15878.1.3-70.fc40.noarch texlive-symbol-11:svn61719-70.fc40.noarch texlive-tabulary-11:svn34368.0.10-70.fc40.noarch texlive-tex-11:svn66186-77.fc39.i686 texlive-tex-gyre-11:svn65956-70.fc40.noarch texlive-tex-gyre-math-11:svn41264-70.fc40.noarch texlive-tex-ini-files-11:svn40533-70.fc40.noarch texlive-texlive-common-doc-11:svn54176-70.fc40.noarch texlive-texlive-en-11:svn66572-77.fc39.noarch texlive-texlive-msg-translations-11:svn66593-70.fc40.noarch texlive-texlive-scripts-11:svn66584-77.fc39.noarch texlive-texlive.infra-11:svn66512-77.fc39.noarch texlive-times-11:svn61719-70.fc40.noarch texlive-tipa-11:svn29349.1.3-70.fc40.noarch texlive-titlesec-11:svn59845-70.fc40.noarch texlive-tools-11:svn64892-70.fc40.noarch texlive-txfonts-11:svn15878.0-70.fc40.noarch texlive-ucharcat-11:svn38907-70.fc40.noarch texlive-ucs-11:svn64114-70.fc40.noarch texlive-underscore-11:svn18261.0-70.fc40.noarch texlive-unicode-data-11:svn64423-70.fc40.noarch texlive-unicode-math-11:svn61719-70.fc40.noarch texlive-uniquecounter-11:svn53162-70.fc40.noarch texlive-upquote-11:svn26059.v1.3-70.fc40.noarch texlive-url-11:svn32528.3.4-70.fc40.noarch texlive-utopia-11:svn15878.0-70.fc40.noarch texlive-varwidth-11:svn24104.0.92-70.fc40.noarch texlive-wasy-11:svn53533-70.fc40.noarch texlive-wasy-type1-11:svn53534-70.fc40.noarch texlive-wasysym-11:svn54080-70.fc40.noarch texlive-wrapfig-11:svn61719-70.fc40.noarch texlive-xcolor-11:svn63563-70.fc40.noarch texlive-xdvi-11:svn62387-77.fc39.i686 texlive-xetex-11:svn66203-77.fc39.i686 texlive-xetexconfig-11:svn45845-70.fc40.noarch texlive-xifthen-11:svn38929-70.fc40.noarch texlive-xindy-11:svn65958-77.fc39.i686 texlive-xkeyval-11:svn63616-70.fc40.noarch texlive-xpatch-11:svn54563-70.fc40.noarch texlive-xstring-11:svn65551-70.fc40.noarch texlive-xunicode-11:svn30466.0.981-70.fc40.noarch texlive-zapfchan-11:svn61719-70.fc40.noarch texlive-zapfding-11:svn61719-70.fc40.noarch texlive-zref-11:svn62977-70.fc40.noarch tzdata-2023d-1.fc40.noarch urw-base35-bookman-fonts-20200910-18.fc39.noarch urw-base35-c059-fonts-20200910-18.fc39.noarch urw-base35-d050000l-fonts-20200910-18.fc39.noarch urw-base35-fonts-20200910-18.fc39.noarch urw-base35-fonts-common-20200910-18.fc39.noarch urw-base35-gothic-fonts-20200910-18.fc39.noarch urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39.noarch urw-base35-nimbus-roman-fonts-20200910-18.fc39.noarch urw-base35-nimbus-sans-fonts-20200910-18.fc39.noarch urw-base35-p052-fonts-20200910-18.fc39.noarch urw-base35-standard-symbols-ps-fonts-20200910-18.fc39.noarch urw-base35-z003-fonts-20200910-18.fc39.noarch vim-filesystem-2:9.0.2190-1.fc40.noarch xdg-utils-1.2.0~git20231511.21fb316-1.fc40.noarch xml-common-0.6.3-62.fc40.noarch xpdf-libs-1:4.04-10.fc39.i686 xprop-1.2.5-4.fc39.i686 zziplib-0.13.72-5.fc39.i686 Complete! Finish: build setup for snakemake-7.32.4-3.fc40.src.rpm Start: rpmbuild snakemake-7.32.4-3.fc40.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1704412800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ZipB9T + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf snakemake-7.32.4 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.32.4.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd snakemake-7.32.4 + rm -rf /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP . recursedown('.') recursedown('./.github') recursedown('./.github/ISSUE_TEMPLATE') recursedown('./.github/workflows') recursedown('./.github/workflows/scripts') recursedown('./docs') recursedown('./docs/_static') recursedown('./docs/apidocs') recursedown('./docs/apidocs/api_reference') recursedown('./docs/apidocs/api_reference/internal') recursedown('./docs/executing') recursedown('./docs/executor_tutorial') recursedown('./docs/executor_tutorial/workflow') recursedown('./docs/getting_started') recursedown('./docs/getting_started/img') recursedown('./docs/project_info') recursedown('./docs/project_info/img') recursedown('./docs/snakefiles') recursedown('./docs/snakefiles/images') recursedown('./docs/tutorial') recursedown('./docs/tutorial/workflow') recursedown('./examples') recursedown('./examples/c') recursedown('./examples/c/include') recursedown('./examples/c/src') recursedown('./examples/cufflinks') recursedown('./examples/cufflinks/mapped') recursedown('./examples/flux') recursedown('./examples/hello-world') 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recursedown('./tests/test_restartable_job_cmd_exit_1/expected-results') recursedown('./tests/test_restartable_job_qsub_exit_1') recursedown('./tests/test_restartable_job_qsub_exit_1/expected-results') recursedown('./tests/test_retries') recursedown('./tests/test_retries/expected-results') recursedown('./tests/test_retries_not_overriden') recursedown('./tests/test_retries_not_overriden/expected-results') recursedown('./tests/test_rule_defined_in_for_loop') recursedown('./tests/test_rule_defined_in_for_loop/expected-results') recursedown('./tests/test_rule_inheritance_globals') recursedown('./tests/test_rule_inheritance_globals/.snakemake') recursedown('./tests/test_rule_inheritance_globals/.snakemake/metadata') recursedown('./tests/test_rule_inheritance_globals/expected-results') recursedown('./tests/test_ruledag') recursedown('./tests/test_ruledeps') recursedown('./tests/test_ruledeps/expected-results') recursedown('./tests/test_run_namedlist') recursedown('./tests/test_run_namedlist/expected-results') recursedown('./tests/test_same_wildcard') recursedown('./tests/test_same_wildcard/expected-results') recursedown('./tests/test_scatter_gather') recursedown('./tests/test_scatter_gather/expected-results') recursedown('./tests/test_scatter_gather/expected-results/gathered') recursedown('./tests/test_scatter_gather/expected-results/splitted') recursedown('./tests/test_scatter_gather_multiple_processes') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/gathered') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_a') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_b') recursedown('./tests/test_script') recursedown('./tests/test_script/envs') recursedown('./tests/test_script/expected-results') recursedown('./tests/test_script/scripts') recursedown('./tests/test_script_py') recursedown('./tests/test_script_py/expected-results') recursedown('./tests/test_script_py/scripts') recursedown('./tests/test_service_jobs') recursedown('./tests/test_service_jobs/expected-results') recursedown('./tests/test_set_resources') recursedown('./tests/test_set_resources/expected-results') recursedown('./tests/test_shadow') recursedown('./tests/test_shadow/expected-results') recursedown('./tests/test_shadow_copy') recursedown('./tests/test_shadow_copy/expected-results') recursedown('./tests/test_shadow_prefix') recursedown('./tests/test_shadow_prefix/expected-results') recursedown('./tests/test_shadowed_log') recursedown('./tests/test_shadowed_log/expected-results') recursedown('./tests/test_shell') recursedown('./tests/test_shell/expected-results') recursedown('./tests/test_singularity') recursedown('./tests/test_singularity/expected-results') recursedown('./tests/test_singularity_conda') recursedown('./tests/test_singularity_conda/expected-results') recursedown('./tests/test_singularity_global') recursedown('./tests/test_singularity_global/expected-results') recursedown('./tests/test_singularity_module') recursedown('./tests/test_singularity_module/expected-results') recursedown('./tests/test_singularity_none') recursedown('./tests/test_singularity_none/expected-results') recursedown('./tests/test_slurm_mpi') recursedown('./tests/test_slurm_mpi/envs') recursedown('./tests/test_slurm_mpi/expected-results') recursedown('./tests/test_solver') recursedown('./tests/test_solver/expected-results') recursedown('./tests/test_source_path') recursedown('./tests/test_source_path/expected-results') recursedown('./tests/test_source_path/workflow') recursedown('./tests/test_source_path/workflow/resources') recursedown('./tests/test_spaces_in_fnames') recursedown('./tests/test_spaces_in_fnames/expected-results') recursedown('./tests/test_speed') recursedown('./tests/test_srcdir') recursedown('./tests/test_srcdir/expected-results') recursedown('./tests/test_static_remote') recursedown('./tests/test_static_remote/expected-results') recursedown('./tests/test_strict_mode') recursedown('./tests/test_strict_mode/expected-results') recursedown('./tests/test_string_resources') recursedown('./tests/test_string_resources/expected-results') recursedown('./tests/test_subworkflow_config') recursedown('./tests/test_subworkflow_config/expected-results') recursedown('./tests/test_subworkflows') recursedown('./tests/test_subworkflows/expected-results') recursedown('./tests/test_symlink_temp') recursedown('./tests/test_symlink_temp/expected-results') recursedown('./tests/test_symlink_time_handling') recursedown('./tests/test_symlink_time_handling/expected-results') recursedown('./tests/test_temp') recursedown('./tests/test_temp/expected-results') recursedown('./tests/test_temp_expand') recursedown('./tests/test_temp_expand/expected-results') recursedown('./tests/test_template_engine') recursedown('./tests/test_template_engine/expected-results') recursedown('./tests/test_tes') recursedown('./tests/test_tes/expected-results') recursedown('./tests/test_threads') recursedown('./tests/test_threads/expected-results') recursedown('./tests/test_threads0') recursedown('./tests/test_threads0/expected-results') recursedown('./tests/test_tibanna') recursedown('./tests/test_tibanna/expected-results') recursedown('./tests/test_tibanna/scripts') recursedown('./tests/test_tmpdir') recursedown('./tests/test_tmpdir/expected-results') recursedown('./tests/test_touch') recursedown('./tests/test_touch/expected-results') recursedown('./tests/test_touch_pipeline_with_temp_dir') recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results') recursedown('./tests/test_touch_remote_prefix') recursedown('./tests/test_touch_remote_prefix/expected-results') recursedown('./tests/test_touch_with_directories') recursedown('./tests/test_touch_with_directories/expected-results') recursedown('./tests/test_unpack_dict') recursedown('./tests/test_unpack_dict/expected-results') recursedown('./tests/test_unpack_list') recursedown('./tests/test_unpack_list/expected-results') recursedown('./tests/test_until') recursedown('./tests/test_until/expected-results') recursedown('./tests/test_update_config') recursedown('./tests/test_update_config/expected-results') recursedown('./tests/test_url_include') recursedown('./tests/test_url_include/expected-results') recursedown('./tests/test_use_rule_same_module') recursedown('./tests/test_use_rule_same_module/expected-results') recursedown('./tests/test_validate') recursedown('./tests/test_validate/expected-results') recursedown('./tests/test_wildcard_count_ambiguity') recursedown('./tests/test_wildcard_count_ambiguity/expected-results') recursedown('./tests/test_wildcard_keyword') recursedown('./tests/test_wildcard_keyword/expected-results') recursedown('./tests/test_workflow_profile') recursedown('./tests/test_workflow_profile/dummy-general-profile') recursedown('./tests/test_workflow_profile/expected-results') recursedown('./tests/test_workflow_profile/workflow') recursedown('./tests/test_workflow_profile/workflow/profiles') recursedown('./tests/test_workflow_profile/workflow/profiles/default') recursedown('./tests/test_wrapper') ./setup.py: no change ./versioneer.py: no change ./.github/workflows/scripts/sacct-proxy.py: updating ./docs/conf.py: updating ./docs/apidocs/conf.py: updating ./examples/hello-world/scripts/plot-hist.py: no change ./snakemake/__init__.py: no change ./snakemake/__main__.py: no change ./snakemake/_version.py: no change ./snakemake/benchmark.py: no change ./snakemake/checkpoints.py: no change ./snakemake/cwl.py: no change ./snakemake/dag.py: no change ./snakemake/decorators.py: no change ./snakemake/exceptions.py: no change ./snakemake/gui.py: no change ./snakemake/interfaces.py: no change ./snakemake/io.py: no change ./snakemake/jobs.py: no change ./snakemake/logging.py: no change ./snakemake/modules.py: no change ./snakemake/notebook.py: no change ./snakemake/output_index.py: no change ./snakemake/parser.py: no change ./snakemake/path_modifier.py: no change ./snakemake/persistence.py: no change ./snakemake/profiles.py: no change ./snakemake/resources.py: no change ./snakemake/ruleinfo.py: no change ./snakemake/rules.py: no change ./snakemake/scheduler.py: no change ./snakemake/script.py: no change ./snakemake/shell.py: no change ./snakemake/sourcecache.py: no change ./snakemake/stats.py: no change ./snakemake/target_jobs.py: no change ./snakemake/utils.py: no change ./snakemake/workflow.py: no change ./snakemake/wrapper.py: no change ./snakemake/caching/__init__.py: no change ./snakemake/caching/hash.py: no change ./snakemake/caching/local.py: no change ./snakemake/caching/remote.py: no change ./snakemake/common/__init__.py: no change ./snakemake/common/tbdstring.py: no change ./snakemake/deployment/__init__.py: no change ./snakemake/deployment/conda.py: no change ./snakemake/deployment/containerize.py: no change ./snakemake/deployment/env_modules.py: no change ./snakemake/deployment/singularity.py: no change ./snakemake/executors/__init__.py: no change ./snakemake/executors/azure_batch.py: no change ./snakemake/executors/common.py: no change ./snakemake/executors/flux.py: no change ./snakemake/executors/ga4gh_tes.py: no change ./snakemake/executors/google_lifesciences.py: no change ./snakemake/executors/google_lifesciences_helper.py: updating ./snakemake/executors/slurm/__init__.py: no change ./snakemake/executors/slurm/slurm_jobstep.py: no change ./snakemake/executors/slurm/slurm_submit.py: no change ./snakemake/linting/__init__.py: no change ./snakemake/linting/links.py: no change ./snakemake/linting/rules.py: no change ./snakemake/linting/snakefiles.py: no change ./snakemake/remote/AzBlob.py: no change ./snakemake/remote/EGA.py: no change ./snakemake/remote/FTP.py: no change ./snakemake/remote/GS.py: no change ./snakemake/remote/HTTP.py: no change ./snakemake/remote/NCBI.py: no change ./snakemake/remote/S3.py: no change ./snakemake/remote/S3Mocked.py: no change ./snakemake/remote/SFTP.py: no change ./snakemake/remote/XRootD.py: no change ./snakemake/remote/__init__.py: no change ./snakemake/remote/dropbox.py: no change ./snakemake/remote/gfal.py: no change ./snakemake/remote/gridftp.py: no change ./snakemake/remote/iRODS.py: no change ./snakemake/remote/webdav.py: no change ./snakemake/remote/zenodo.py: no change ./snakemake/report/__init__.py: no change ./snakemake/report/rulegraph_spec.py: no change ./snakemake/report/data/__init__.py: no change ./snakemake/report/data/categories.py: no change ./snakemake/report/data/common.py: no change ./snakemake/report/data/packages.py: no change ./snakemake/report/data/results.py: no change ./snakemake/report/data/rulegraph.py: no change ./snakemake/report/data/rules.py: no change ./snakemake/report/data/runtimes.py: no change ./snakemake/report/data/timeline.py: no change ./snakemake/report/template/__init__.py: no change ./snakemake/report/template/components/__init__.py: no change ./snakemake/template_rendering/__init__.py: no change ./snakemake/template_rendering/jinja2.py: no change ./snakemake/template_rendering/yte.py: no change ./snakemake/unit_tests/__init__.py: no change ./snakemake/unit_tests/templates/__init__.py: no change ./tests/__init__.py: no change ./tests/common.py: no change ./tests/conftest.py: no change ./tests/test_azure_batch_executor.py: no change ./tests/test_expand.py: no change ./tests/test_google_lifesciences.py: no change ./tests/test_io.py: no change ./tests/test_kubernetes.py: no change ./tests/test_linting.py: no change ./tests/test_persistence.py: no change ./tests/test_schema.py: no change ./tests/test_script.py: no change ./tests/test_slurm.py: no change ./tests/test_tes.py: no change ./tests/test_tibanna.py: no change ./tests/testapi.py: no change ./tests/tests.py: no change ./tests/test14/qsub.py: updating ./tests/test_benchmark/script.py: updating ./tests/test_conda_python_3_7_script/test_script.py: no change ./tests/test_conda_python_script/test_script.py: no change ./tests/test_filegraph/scripts/vis.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_a.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_all.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_b.py: no change ./tests/test_get_log_both/wrapper.py: no change ./tests/test_get_log_complex/wrapper.py: no change ./tests/test_get_log_none/wrapper.py: no change ./tests/test_get_log_stderr/wrapper.py: no change ./tests/test_get_log_stdout/wrapper.py: no change ./tests/test_github_issue1158/qsub.py: updating ./tests/test_github_issue627/job.py: updating ./tests/test_github_issue_14/local_script.py: no change ./tests/test_github_issue_14/pythonTest.py: updating ./tests/test_handover/script.py: no change ./tests/test_issue1046/my_wrapper/wrapper.py: no change ./tests/test_issue916/local_script.py: no change ./tests/test_issue916/pythonTest.py: updating ./tests/test_job_properties/qsub.py: updating ./tests/test_local_import/bar.py: no change ./tests/test_local_import/foo/__init__.py: no change ./tests/test_paramspace/scripts/simulate.py: no change ./tests/test_paramspace_single_wildcard/scripts/simulate.py: no change ./tests/test_prebuilt_conda_script/test.py: no change ./tests/test_prebuilt_conda_script/dummy_package/src/dummy/__init__.py: no change ./tests/test_prebuilt_conda_script/dummy_package/src/dummy/dummy.py: no change ./tests/test_report_display_code/test.py: no change ./tests/test_restartable_job_cmd_exit_1/qsub.py: updating ./tests/test_restartable_job_qsub_exit_1/qsub.py: updating ./tests/test_script/scripts/test.py: no change ./tests/test_script_py/scripts/test.py: no change ./tests/test_singularity/script.py: no change ./tests/test_singularity_module/script.py: no change ./tests/test_static_remote/S3MockedForStaticTest.py: no change ./tests/test_static_remote/__init__.py: no change ./tests/test_string_resources/qsub.py: updating ./tests/test_tibanna/cleanup.py: no change ./tests/test_tibanna/scripts/step2.py: no change recursedown('./tests/test_wrapper/expected-results') recursedown('./tests/test_xrootd') recursedown('./tests/test_yaml_config') recursedown('./tests/test_yaml_config/expected-results') + sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py + sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py + sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt + echo 'latex_engine = '\''xelatex'\''' + for editor in nano vim + cp -vp misc/nano/README.md README-nano.md 'misc/nano/README.md' -> 'README-nano.md' + for editor in nano vim + cp -vp misc/vim/README.md README-vim.md 'misc/vim/README.md' -> 'README-vim.md' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.7xb93e + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement not satisfied: sphinx-argparse Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement not satisfied: sphinx_rtd_theme Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement not satisfied: myst-parser Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement not satisfied: appdirs Exiting dependency generation pass: all requirements files + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 80 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 196 kB/s | 3.8 kB 00:00 local 213 kB/s | 3.8 kB 00:00 Package librsvg2-tools-2.57.1-1.fc40.i686 is already installed. Package texlive-xindy-11:svn65958-77.fc39.i686 is already installed. Package help2man-1.49.3-3.fc39.noarch is already installed. Package latexmk-4.82-1.fc40.noarch is already installed. Package make-1:4.4.1-2.fc39.i686 is already installed. Package pyproject-rpm-macros-1.11.0-1.fc40.noarch is already installed. Package python3-devel-3.12.1-2.fc40.i686 is already installed. Package python3-devel-3.12.1-2.fc40.i686 is already installed. Package python3-sphinx-latex-1:7.2.6-4.fc40.noarch is already installed. Package python3-boto3-1.34.12-1.fc40.noarch is already installed. Package python3-configargparse-1.7-1.fc40.noarch is already installed. Package python3-configargparse-1.7-1.fc40.noarch is already installed. Package python3-docutils-0.20.1-1.fc40.noarch is already installed. Package python3-packaging-23.2-2.fc40.noarch is already installed. Package python3-pandas-1.5.3-7.fc39~bootstrap.i686 is already installed. Package python3-pytest-7.4.3-1.fc40.noarch is already installed. Package python3-requests-mock-1.10.0-5.fc39.noarch is already installed. Package python3-sphinx-1:7.2.6-4.fc40.noarch is already installed. Package texlive-xetex-11:svn66203-77.fc39.i686 is already installed. Package vim-filesystem-2:9.0.2190-1.fc40.noarch is already installed. Dependencies resolved. =========================================================================================================================================== Package Arch Version Repository Size =========================================================================================================================================== Installing: python3-appdirs noarch 1.4.4-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 23 k python3-myst-parser noarch 2.0.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 185 k python3-pip noarch 23.3.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.9 M python3-sphinx-argparse noarch 0.4.0-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k python3-sphinx_rtd_theme noarch 2.0.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 74 k Installing dependencies: fontawesome4-fonts noarch 1:4.7.0-19.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 204 k google-roboto-slab-fonts noarch 1.100263-0.21.20150923git.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 239 k lato-fonts noarch 2.015-17.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.1 M libyaml i686 0.2.5-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 62 k python3-markdown-it-py noarch 3.0.0-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 165 k python3-mdit-py-plugins noarch 0.4.0-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101 k python3-mdurl noarch 0.1.2-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 26 k python3-pyyaml i686 6.0.1-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 219 k python3-sphinxcontrib-jquery noarch 4.1-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113 k Transaction Summary =========================================================================================================================================== Install 14 Packages Total download size: 7.4 M Installed size: 30 M Downloading Packages: (1/14): google-roboto-slab-fonts-1.100263-0.21. 5.6 MB/s | 239 kB 00:00 (2/14): lato-fonts-2.015-17.fc39.noarch.rpm 67 MB/s | 3.1 MB 00:00 (3/14): fontawesome4-fonts-4.7.0-19.fc40.noarch 4.2 MB/s | 204 kB 00:00 (4/14): libyaml-0.2.5-12.fc39.i686.rpm 8.5 MB/s | 62 kB 00:00 (5/14): python3-appdirs-1.4.4-11.fc39.noarch.rp 2.7 MB/s | 23 kB 00:00 (6/14): python3-markdown-it-py-3.0.0-2.fc39.noa 17 MB/s | 165 kB 00:00 (7/14): python3-mdit-py-plugins-0.4.0-2.fc39.no 13 MB/s | 101 kB 00:00 (8/14): python3-mdurl-0.1.2-4.fc39.noarch.rpm 3.2 MB/s | 26 kB 00:00 (9/14): python3-myst-parser-2.0.0-3.fc40.noarch 16 MB/s | 185 kB 00:00 (10/14): python3-pip-23.3.1-2.fc40.noarch.rpm 181 MB/s | 2.9 MB 00:00 (11/14): python3-pyyaml-6.0.1-11.fc39.i686.rpm 23 MB/s | 219 kB 00:00 (12/14): python3-sphinx-argparse-0.4.0-4.fc39.n 3.1 MB/s | 39 kB 00:00 (13/14): python3-sphinxcontrib-jquery-4.1-5.fc4 12 MB/s | 113 kB 00:00 (14/14): python3-sphinx_rtd_theme-2.0.0-1.fc40. 7.5 MB/s | 74 kB 00:00 -------------------------------------------------------------------------------- Total 86 MB/s | 7.4 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-sphinxcontrib-jquery-4.1-5.fc40.noarch 1/14 Installing : python3-mdurl-0.1.2-4.fc39.noarch 2/14 Installing : python3-markdown-it-py-3.0.0-2.fc39.noarch 3/14 Installing : python3-mdit-py-plugins-0.4.0-2.fc39.noarch 4/14 Installing : lato-fonts-2.015-17.fc39.noarch 5/14 Installing : google-roboto-slab-fonts-1.100263-0.21.20150923git 6/14 Installing : fontawesome4-fonts-1:4.7.0-19.fc40.noarch 7/14 Installing : libyaml-0.2.5-12.fc39.i686 8/14 Installing : python3-sphinx_rtd_theme-2.0.0-1.fc40.noarch 9/14 Installing : python3-sphinx-argparse-0.4.0-4.fc39.noarch 10/14 Installing : python3-pip-23.3.1-2.fc40.noarch 11/14 Installing : python3-appdirs-1.4.4-11.fc39.noarch 12/14 Installing : python3-pyyaml-6.0.1-11.fc39.i686 13/14 Installing : python3-myst-parser-2.0.0-3.fc40.noarch 14/14 Running scriptlet: python3-myst-parser-2.0.0-3.fc40.noarch 14/14 Installed: fontawesome4-fonts-1:4.7.0-19.fc40.noarch google-roboto-slab-fonts-1.100263-0.21.20150923git.fc39.noarch lato-fonts-2.015-17.fc39.noarch libyaml-0.2.5-12.fc39.i686 python3-appdirs-1.4.4-11.fc39.noarch python3-markdown-it-py-3.0.0-2.fc39.noarch python3-mdit-py-plugins-0.4.0-2.fc39.noarch python3-mdurl-0.1.2-4.fc39.noarch python3-myst-parser-2.0.0-3.fc40.noarch python3-pip-23.3.1-2.fc40.noarch python3-pyyaml-6.0.1-11.fc39.i686 python3-sphinx-argparse-0.4.0-4.fc39.noarch python3-sphinx_rtd_theme-2.0.0-1.fc40.noarch python3-sphinxcontrib-jquery-4.1-5.fc40.noarch Complete! Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1704412800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.zddhDc + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement satisfied: sphinx-argparse (installed: sphinx-argparse 0.4.0) Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement satisfied: sphinx_rtd_theme (installed: sphinx_rtd_theme 2.0.0) Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement satisfied: myst-parser (installed: myst-parser 2.0.0) Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info creating snakemake.egg-info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt writing manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement not satisfied: wheel Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 96 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 200 kB/s | 3.8 kB 00:00 local 207 kB/s | 3.8 kB 00:00 Package librsvg2-tools-2.57.1-1.fc40.i686 is already installed. Package texlive-xindy-11:svn65958-77.fc39.i686 is already installed. Package help2man-1.49.3-3.fc39.noarch is already installed. Package latexmk-4.82-1.fc40.noarch is already installed. Package make-1:4.4.1-2.fc39.i686 is already installed. Package pyproject-rpm-macros-1.11.0-1.fc40.noarch is already installed. Package python3-devel-3.12.1-2.fc40.i686 is already installed. Package python3-devel-3.12.1-2.fc40.i686 is already installed. Package python3-sphinx-latex-1:7.2.6-4.fc40.noarch is already installed. Package python3-appdirs-1.4.4-11.fc39.noarch is already installed. Package python3-boto3-1.34.12-1.fc40.noarch is already installed. Package python3-configargparse-1.7-1.fc40.noarch is already installed. Package python3-configargparse-1.7-1.fc40.noarch is already installed. Package python3-docutils-0.20.1-1.fc40.noarch is already installed. Package python3-myst-parser-2.0.0-3.fc40.noarch is already installed. Package python3-packaging-23.2-2.fc40.noarch is already installed. Package python3-pandas-1.5.3-7.fc39~bootstrap.i686 is already installed. Package python3-pip-23.3.1-2.fc40.noarch is already installed. Package python3-pytest-7.4.3-1.fc40.noarch is already installed. Package python3-requests-mock-1.10.0-5.fc39.noarch is already installed. Package python3-setuptools-68.2.2-1.fc40.noarch is already installed. Package python3-sphinx-1:7.2.6-4.fc40.noarch is already installed. Package python3-sphinx-argparse-0.4.0-4.fc39.noarch is already installed. Package python3-sphinx_rtd_theme-2.0.0-1.fc40.noarch is already installed. Package texlive-xetex-11:svn66203-77.fc39.i686 is already installed. Package vim-filesystem-2:9.0.2190-1.fc40.noarch is already installed. Dependencies resolved. ============================================================================================================= Package Arch Version Repository Size ============================================================================================================= Installing: python3-wheel noarch 1:0.41.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 148 k Transaction Summary ============================================================================================================= Install 1 Package Total download size: 148 k Installed size: 507 k Downloading Packages: python3-wheel-0.41.2-1.fc40.noarch.rpm 5.4 MB/s | 148 kB 00:00 -------------------------------------------------------------------------------- Total 5.0 MB/s | 148 kB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-wheel-1:0.41.2-1.fc40.noarch 1/1 Running scriptlet: python3-wheel-1:0.41.2-1.fc40.noarch 1/1 Installed: python3-wheel-1:0.41.2-1.fc40.noarch Complete! Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1704412800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.jnJSDw + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement satisfied: sphinx-argparse (installed: sphinx-argparse 0.4.0) Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement satisfied: sphinx_rtd_theme (installed: sphinx_rtd_theme 2.0.0) Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement satisfied: myst-parser (installed: myst-parser 2.0.0) Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-7.32.4/snakemake-7.32.4.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: connection-pool >=0.0.3 Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: datrie Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: gitpython Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: humanfriendly Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.2) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: jsonschema Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: nbformat Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: psutil Handling pulp >=2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pulp >=2.0 Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests (installed: requests 2.28.2) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: reretry Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: smart-open >=3.0 Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: stopit Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: tabulate Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: throttler Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: toposort >=1.10 Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: wrapt Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: yte <2.0,>=1.5.1 Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-storage-blob ; extra == 'azure' Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-batch ; extra == 'azure' Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-core ; extra == 'azure' Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-identity ; extra == 'azure' Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-mgmt-batch ; extra == 'azure' Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: google-api-python-client ; extra == 'google-cloud' Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: google-cloud-storage ; extra == 'google-cloud' Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: google-crc32c ; extra == 'google-cloud' Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: oauth2client ; extra == 'google-cloud' Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: slacker ; extra == 'messaging' Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires + rm -rfv snakemake-7.32.4.dist-info/ removed 'snakemake-7.32.4.dist-info/AUTHORS.rst' removed 'snakemake-7.32.4.dist-info/LICENSE.md' removed 'snakemake-7.32.4.dist-info/METADATA' removed 'snakemake-7.32.4.dist-info/entry_points.txt' removed 'snakemake-7.32.4.dist-info/top_level.txt' removed directory 'snakemake-7.32.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 94 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 203 kB/s | 3.8 kB 00:00 local 240 kB/s | 3.8 kB 00:00 Package python3-jinja2-3.1.2-6.fc40.noarch is already installed. Package librsvg2-tools-2.57.1-1.fc40.i686 is already installed. Package texlive-xindy-11:svn65958-77.fc39.i686 is already installed. Package help2man-1.49.3-3.fc39.noarch is already installed. Package latexmk-4.82-1.fc40.noarch is already installed. Package make-1:4.4.1-2.fc39.i686 is already installed. Package pyproject-rpm-macros-1.11.0-1.fc40.noarch is already installed. Package python3-devel-3.12.1-2.fc40.i686 is already installed. Package python3-devel-3.12.1-2.fc40.i686 is already installed. Package python3-sphinx-latex-1:7.2.6-4.fc40.noarch is already installed. Package python3-appdirs-1.4.4-11.fc39.noarch is already installed. Package python3-boto3-1.34.12-1.fc40.noarch is already installed. Package python3-configargparse-1.7-1.fc40.noarch is already installed. Package python3-configargparse-1.7-1.fc40.noarch is already installed. Package python3-docutils-0.20.1-1.fc40.noarch is already installed. Package python3-myst-parser-2.0.0-3.fc40.noarch is already installed. Package python3-packaging-23.2-2.fc40.noarch is already installed. Package python3-pandas-1.5.3-7.fc39~bootstrap.i686 is already installed. Package python3-pip-23.3.1-2.fc40.noarch is already installed. Package python3-pygments-2.17.2-1.fc40.noarch is already installed. Package python3-pytest-7.4.3-1.fc40.noarch is already installed. Package python3-pyyaml-6.0.1-11.fc39.i686 is already installed. Package python3-requests-2.28.2-7.fc40.noarch is already installed. Package python3-requests-mock-1.10.0-5.fc39.noarch is already installed. Package python3-setuptools-68.2.2-1.fc40.noarch is already installed. Package python3-sphinx-1:7.2.6-4.fc40.noarch is already installed. Package python3-sphinx-argparse-0.4.0-4.fc39.noarch is already installed. Package python3-sphinx_rtd_theme-2.0.0-1.fc40.noarch is already installed. Package python3-wheel-1:0.41.2-1.fc40.noarch is already installed. Package texlive-xetex-11:svn66203-77.fc39.i686 is already installed. Package vim-filesystem-2:9.0.2190-1.fc40.noarch is already installed. Dependencies resolved. ================================================================================================================================================= Package Arch Version Repository Size ================================================================================================================================================= Installing: python3-GitPython noarch 3.1.40-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 361 k python3-azure-batch noarch 14.0.0-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 207 k python3-azure-core noarch 2:1.28.0-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 260 k python3-azure-identity noarch 1:1.14.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 199 k python3-azure-mgmt-batch noarch 17.0.0-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 194 k python3-azure-storage-blob noarch 12.14.1-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 509 k python3-connection_pool noarch 0.0.3-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17 k python3-datrie i686 0.8.2-22.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 164 k python3-google-api-client noarch 2:2.112.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.7 M python3-google-cloud-storage noarch 2.14.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 189 k python3-google-crc32c i686 1.1.2-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 31 k python3-humanfriendly noarch 10.0-8.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 131 k python3-jsonschema noarch 4.19.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 186 k python3-nbformat noarch 5.9.1-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 120 k python3-oauth2client noarch 4.1.3-23.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 166 k python3-psutil i686 5.9.5-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 259 k python3-pulp noarch 2.7.0-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 195 k python3-reretry noarch 0.11.8-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 18 k python3-slacker noarch 0.14.0-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35 k python3-smart_open noarch 6.4.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 107 k python3-stopit noarch 1.1.2-8.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 25 k python3-tabulate noarch 0.9.0-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 69 k python3-throttler noarch 1.2.2-7.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22 k python3-toposort noarch 1.10-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20 k python3-wrapt i686 1.16.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 68 k python3-yte noarch 1.5.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 31 k Installing dependencies: abseil-cpp i686 20230802.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 726 k c-ares i686 1.22.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149 k git-core i686 2.43.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.6 M google-crc32c i686 1.1.2-7.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k grpc-data noarch 1.48.4-30.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 23 k less i686 643-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 182 k libcbor i686 0.10.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k libedit i686 3.1-48.20230828cvs.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 110 k libfido2 i686 1.14.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 105 k openssh i686 9.3p1-13.fc40.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 446 k openssh-clients i686 9.3p1-13.fc40.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 751 k protobuf i686 3.19.6-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M python3-adal noarch 1.2.7-13.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 93 k python3-attrs noarch 23.1.0-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 110 k python3-azure-common noarch 1:1.1.28-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 33 k python3-azure-mgmt-core noarch 1:1.3.2-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k python3-boto noarch 2.49.0-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 M python3-cachetools noarch 5.3.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k python3-certifi noarch 2023.05.07-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14 k python3-cffi i686 1.16.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 301 k python3-cryptography i686 41.0.5-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 M python3-dpath noarch 2.1.4-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k python3-fasteners noarch 0.19-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44 k python3-fastjsonschema noarch 2.18.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 56 k python3-gitdb noarch 4.0.10-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 128 k python3-google-api-core noarch 1:2.11.1-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 177 k python3-google-auth noarch 1:2.26.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 243 k python3-google-auth-httplib2 noarch 0.2.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k python3-google-cloud-core noarch 2.3.3-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 63 k python3-google-resumable-media noarch 2.6.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88 k python3-googleapis-common-protos noarch 1.62.0-7.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 182 k python3-grpcio i686 1.48.4-30.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 M python3-grpcio-status noarch 1.48.4-30.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22 k python3-httplib2 noarch 0.21.0-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134 k python3-isodate noarch 0.6.1-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67 k python3-jsonschema-specifications noarch 2023.11.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k python3-jupyter-core noarch 5.1.0-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125 k python3-jwt noarch 2.6.0-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 54 k python3-jwt+crypto noarch 2.6.0-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.9 k python3-msal noarch 1.26.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 170 k python3-msal-extensions noarch 1.0.0-7.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python3-msrest noarch 0.7.1-8.20221014git2d8fd04.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 137 k python3-msrestazure noarch 0.6.4-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 71 k python3-oauthlib noarch 3.2.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 208 k python3-plac noarch 1.4.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 61 k python3-platformdirs noarch 3.11.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40 k python3-ply noarch 3.11-20.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 130 k python3-portalocker noarch 2.8.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44 k python3-protobuf i686 3.19.6-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 397 k python3-pyOpenSSL noarch 23.2.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121 k python3-pyasn1 noarch 0.5.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 179 k python3-pyasn1-modules noarch 0.5.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 313 k python3-pycparser noarch 2.20-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146 k python3-pyparsing noarch 3.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 261 k python3-referencing noarch 0.31.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 73 k python3-requests-oauthlib noarch 1.3.1-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 47 k python3-rpds-py i686 0.16.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 314 k python3-rsa noarch 4.9-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 70 k python3-smmap noarch 5.0.0-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55 k python3-traitlets noarch 5.11.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 191 k python3-typing-extensions noarch 4.9.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 77 k python3-uritemplate noarch 4.1.1-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35 k python3-zombie-imp noarch 0.0.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 29 k re2 i686 1:20220601-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 210 k Transaction Summary ================================================================================================================================================= Install 90 Packages Total download size: 27 M Installed size: 191 M Downloading Packages: (1/90): c-ares-1.22.1-1.fc40.i686.rpm 5.4 MB/s | 149 kB 00:00 (2/90): google-crc32c-1.1.2-7.fc39.i686.rpm 3.0 MB/s | 21 kB 00:00 (3/90): abseil-cpp-20230802.1-2.fc40.i686.rpm 18 MB/s | 726 kB 00:00 (4/90): grpc-data-1.48.4-30.fc40.noarch.rpm 3.6 MB/s | 23 kB 00:00 (5/90): less-643-1.fc40.i686.rpm 23 MB/s | 182 kB 00:00 (6/90): git-core-2.43.0-1.fc40.i686.rpm 86 MB/s | 4.6 MB 00:00 (7/90): libcbor-0.10.2-3.fc40.i686.rpm 2.9 MB/s | 37 kB 00:00 (8/90): libedit-3.1-48.20230828cvs.fc40.i686.rp 13 MB/s | 110 kB 00:00 (9/90): libfido2-1.14.0-1.fc40.i686.rpm 10 MB/s | 105 kB 00:00 (10/90): openssh-9.3p1-13.fc40.1.i686.rpm 36 MB/s | 446 kB 00:00 (11/90): openssh-clients-9.3p1-13.fc40.1.i686.r 64 MB/s | 751 kB 00:00 (12/90): protobuf-3.19.6-6.fc39.i686.rpm 94 MB/s | 1.1 MB 00:00 (13/90): python3-GitPython-3.1.40-1.fc40.noarch 39 MB/s | 361 kB 00:00 (14/90): python3-adal-1.2.7-13.fc39.noarch.rpm 13 MB/s | 93 kB 00:00 (15/90): python3-attrs-23.1.0-4.fc39.noarch.rpm 17 MB/s | 110 kB 00:00 (16/90): python3-azure-common-1.1.28-6.fc39.noa 5.0 MB/s | 33 kB 00:00 (17/90): python3-azure-batch-14.0.0-1.fc39.noar 27 MB/s | 207 kB 00:00 (18/90): python3-azure-core-1.28.0-3.fc39.noarc 32 MB/s | 260 kB 00:00 (19/90): python3-azure-identity-1.14.0-1.fc40.n 25 MB/s | 199 kB 00:00 (20/90): python3-azure-mgmt-batch-17.0.0-5.fc39 24 MB/s | 194 kB 00:00 (21/90): python3-azure-mgmt-core-1.3.2-9.fc39.n 5.1 MB/s | 39 kB 00:00 (22/90): python3-azure-storage-blob-12.14.1-4.f 41 MB/s | 509 kB 00:00 (23/90): python3-boto-2.49.0-18.fc39.noarch.rpm 106 MB/s | 1.6 MB 00:00 (24/90): python3-certifi-2023.05.07-2.fc39.noar 2.4 MB/s | 14 kB 00:00 (25/90): python3-cachetools-5.3.2-1.fc40.noarch 2.9 MB/s | 37 kB 00:00 (26/90): python3-cffi-1.16.0-1.fc40.i686.rpm 29 MB/s | 301 kB 00:00 (27/90): python3-connection_pool-0.0.3-9.fc39.n 1.9 MB/s | 17 kB 00:00 (28/90): python3-datrie-0.8.2-22.fc40.i686.rpm 23 MB/s | 164 kB 00:00 (29/90): python3-cryptography-41.0.5-2.fc40.i68 82 MB/s | 1.3 MB 00:00 (30/90): python3-dpath-2.1.4-3.fc39.noarch.rpm 5.0 MB/s | 37 kB 00:00 (31/90): python3-fastjsonschema-2.18.0-1.fc40.n 14 MB/s | 56 kB 00:00 (32/90): python3-fasteners-0.19-2.fc40.noarch.r 6.8 MB/s | 44 kB 00:00 (33/90): python3-gitdb-4.0.10-3.fc39.noarch.rpm 19 MB/s | 128 kB 00:00 (34/90): python3-google-api-core-2.11.1-5.fc39. 24 MB/s | 177 kB 00:00 (35/90): python3-google-auth-2.26.0-1.fc40.noar 31 MB/s | 243 kB 00:00 (36/90): python3-google-auth-httplib2-0.2.0-1.f 3.0 MB/s | 21 kB 00:00 (37/90): python3-google-cloud-core-2.3.3-2.fc39 7.4 MB/s | 63 kB 00:00 (38/90): python3-google-api-client-2.112.0-1.fc 178 MB/s | 4.7 MB 00:00 (39/90): python3-google-cloud-storage-2.14.0-2. 16 MB/s | 189 kB 00:00 (40/90): python3-google-crc32c-1.1.2-9.fc39.i68 4.1 MB/s | 31 kB 00:00 (41/90): python3-googleapis-common-protos-1.62. 22 MB/s | 182 kB 00:00 (42/90): python3-google-resumable-media-2.6.0-1 9.1 MB/s | 88 kB 00:00 (43/90): python3-grpcio-status-1.48.4-30.fc40.n 3.5 MB/s | 22 kB 00:00 (44/90): python3-grpcio-1.48.4-30.fc40.i686.rpm 131 MB/s | 2.5 MB 00:00 (45/90): python3-httplib2-0.21.0-4.fc39.noarch. 13 MB/s | 134 kB 00:00 (46/90): python3-jsonschema-4.19.1-1.fc40.noarc 33 MB/s | 186 kB 00:00 (47/90): python3-humanfriendly-10.0-8.fc39.noar 13 MB/s | 131 kB 00:00 (48/90): python3-isodate-0.6.1-9.fc39.noarch.rp 10 MB/s | 67 kB 00:00 (49/90): python3-jsonschema-specifications-2023 4.9 MB/s | 21 kB 00:00 (50/90): python3-jupyter-core-5.1.0-5.fc39.noar 28 MB/s | 125 kB 00:00 (51/90): python3-jwt+crypto-2.6.0-4.fc39.noarch 1.7 MB/s | 8.9 kB 00:00 (52/90): python3-jwt-2.6.0-4.fc39.noarch.rpm 8.8 MB/s | 54 kB 00:00 (53/90): python3-msal-1.26.0-2.fc40.noarch.rpm 20 MB/s | 170 kB 00:00 (54/90): python3-msal-extensions-1.0.0-7.fc39.n 5.5 MB/s | 41 kB 00:00 (55/90): python3-msrest-0.7.1-8.20221014git2d8f 19 MB/s | 137 kB 00:00 (56/90): python3-nbformat-5.9.1-2.fc39.noarch.r 25 MB/s | 120 kB 00:00 (57/90): python3-msrestazure-0.6.4-18.fc39.noar 11 MB/s | 71 kB 00:00 (58/90): python3-oauth2client-4.1.3-23.fc39.noa 23 MB/s | 166 kB 00:00 (59/90): python3-oauthlib-3.2.2-1.fc40.noarch.r 28 MB/s | 208 kB 00:00 (60/90): python3-plac-1.4.2-3.fc40.noarch.rpm 9.3 MB/s | 61 kB 00:00 (61/90): python3-platformdirs-3.11.0-1.fc40.noa 9.8 MB/s | 40 kB 00:00 (62/90): python3-ply-3.11-20.fc39.noarch.rpm 21 MB/s | 130 kB 00:00 (63/90): python3-portalocker-2.8.2-2.fc40.noarc 4.8 MB/s | 44 kB 00:00 (64/90): python3-protobuf-3.19.6-6.fc39.i686.rp 53 MB/s | 397 kB 00:00 (65/90): python3-psutil-5.9.5-2.fc40.i686.rpm 46 MB/s | 259 kB 00:00 (66/90): python3-pulp-2.7.0-3.fc39.noarch.rpm 24 MB/s | 195 kB 00:00 (67/90): python3-pyOpenSSL-23.2.0-1.fc40.noarch 15 MB/s | 121 kB 00:00 (68/90): python3-pyasn1-0.5.1-1.fc40.noarch.rpm 22 MB/s | 179 kB 00:00 (69/90): python3-pyasn1-modules-0.5.1-1.fc40.no 44 MB/s | 313 kB 00:00 (70/90): python3-pyparsing-3.1.1-1.fc40.noarch. 48 MB/s | 261 kB 00:00 (71/90): python3-pycparser-2.20-12.fc40.noarch. 22 MB/s | 146 kB 00:00 (72/90): python3-referencing-0.31.1-1.fc40.noar 16 MB/s | 73 kB 00:00 (73/90): python3-requests-oauthlib-1.3.1-6.fc39 6.6 MB/s | 47 kB 00:00 (74/90): python3-reretry-0.11.8-6.fc40.noarch.r 2.5 MB/s | 18 kB 00:00 (75/90): python3-rpds-py-0.16.2-1.fc40.i686.rpm 53 MB/s | 314 kB 00:00 (76/90): python3-slacker-0.14.0-12.fc39.noarch. 5.8 MB/s | 35 kB 00:00 (77/90): python3-rsa-4.9-3.fc39.noarch.rpm 10 MB/s | 70 kB 00:00 (78/90): python3-smart_open-6.4.0-1.fc40.noarch 17 MB/s | 107 kB 00:00 (79/90): python3-smmap-5.0.0-6.fc39.noarch.rpm 7.8 MB/s | 55 kB 00:00 (80/90): python3-tabulate-0.9.0-4.fc39.noarch.r 14 MB/s | 69 kB 00:00 (81/90): python3-stopit-1.1.2-8.fc39.noarch.rpm 3.5 MB/s | 25 kB 00:00 (82/90): python3-traitlets-5.11.2-1.fc40.noarch 39 MB/s | 191 kB 00:00 (83/90): python3-throttler-1.2.2-7.fc40.noarch. 3.2 MB/s | 22 kB 00:00 (84/90): python3-toposort-1.10-8.fc40.noarch.rp 2.7 MB/s | 20 kB 00:00 (85/90): python3-typing-extensions-4.9.0-1.fc40 12 MB/s | 77 kB 00:00 (86/90): python3-wrapt-1.16.0-1.fc40.i686.rpm 12 MB/s | 68 kB 00:00 (87/90): python3-uritemplate-4.1.1-6.fc39.noarc 5.1 MB/s | 35 kB 00:00 (88/90): python3-yte-1.5.4-1.fc40.noarch.rpm 4.7 MB/s | 31 kB 00:00 (89/90): python3-zombie-imp-0.0.2-3.fc40.noarch 4.4 MB/s | 29 kB 00:00 (90/90): re2-20220601-3.fc39.i686.rpm 29 MB/s | 210 kB 00:00 -------------------------------------------------------------------------------- Total 95 MB/s | 27 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-pyasn1-0.5.1-1.fc40.noarch 1/90 Installing : python3-rsa-4.9-3.fc39.noarch 2/90 Installing : python3-pyasn1-modules-0.5.1-1.fc40.noarch 3/90 Installing : python3-traitlets-5.11.2-1.fc40.noarch 4/90 Installing : python3-azure-common-1:1.1.28-6.fc39.noarch 5/90 Installing : python3-attrs-23.1.0-4.fc39.noarch 6/90 Installing : python3-zombie-imp-0.0.2-3.fc40.noarch 7/90 Installing : python3-boto-2.49.0-18.fc39.noarch 8/90 Installing : python3-uritemplate-4.1.1-6.fc39.noarch 9/90 Installing : python3-typing-extensions-4.9.0-1.fc40.noarch 10/90 Installing : python3-azure-core-2:1.28.0-3.fc39.noarch 11/90 Installing : python3-azure-mgmt-core-1:1.3.2-9.fc39.noarch 12/90 Installing : python3-smmap-5.0.0-6.fc39.noarch 13/90 Installing : python3-gitdb-4.0.10-3.fc39.noarch 14/90 Installing : python3-pyparsing-3.1.1-1.fc40.noarch 15/90 Installing : python3-httplib2-0.21.0-4.fc39.noarch 16/90 Installing : python3-portalocker-2.8.2-2.fc40.noarch 17/90 Installing : python3-ply-3.11-20.fc39.noarch 18/90 Installing : python3-pycparser-2.20-12.fc40.noarch 19/90 Installing : python3-platformdirs-3.11.0-1.fc40.noarch 20/90 Installing : python3-jupyter-core-5.1.0-5.fc39.noarch 21/90 Installing : python3-plac-1.4.2-3.fc40.noarch 22/90 Installing : python3-oauthlib-3.2.2-1.fc40.noarch 23/90 Installing : python3-requests-oauthlib-1.3.1-6.fc39.noarch 24/90 Installing : python3-isodate-0.6.1-9.fc39.noarch 25/90 Installing : python3-fastjsonschema-2.18.0-1.fc40.noarch 26/90 Installing : python3-fasteners-0.19-2.fc40.noarch 27/90 Installing : python3-dpath-2.1.4-3.fc39.noarch 28/90 Installing : python3-certifi-2023.05.07-2.fc39.noarch 29/90 Installing : python3-msrest-0.7.1-8.20221014git2d8fd04.fc39.noa 30/90 Installing : python3-cachetools-5.3.2-1.fc40.noarch 31/90 Installing : python3-google-auth-1:2.26.0-1.fc40.noarch 32/90 Installing : python3-google-auth-httplib2-0.2.0-1.fc40.noarch 33/90 Installing : grpc-data-1.48.4-30.fc40.noarch 34/90 Installing : python3-cffi-1.16.0-1.fc40.i686 35/90 Installing : python3-cryptography-41.0.5-2.fc40.i686 36/90 Installing : python3-jwt-2.6.0-4.fc39.noarch 37/90 Installing : python3-jwt+crypto-2.6.0-4.fc39.noarch 38/90 Installing : python3-msal-1.26.0-2.fc40.noarch 39/90 Installing : python3-rpds-py-0.16.2-1.fc40.i686 40/90 Installing : python3-referencing-0.31.1-1.fc40.noarch 41/90 Installing : python3-jsonschema-specifications-2023.11.2-1.fc40 42/90 Installing : python3-jsonschema-4.19.1-1.fc40.noarch 43/90 Installing : python3-msal-extensions-1.0.0-7.fc39.noarch 44/90 Installing : python3-adal-1.2.7-13.fc39.noarch 45/90 Installing : python3-msrestazure-0.6.4-18.fc39.noarch 46/90 Installing : python3-pyOpenSSL-23.2.0-1.fc40.noarch 47/90 Installing : re2-1:20220601-3.fc39.i686 48/90 Installing : protobuf-3.19.6-6.fc39.i686 49/90 Installing : python3-protobuf-3.19.6-6.fc39.i686 50/90 Installing : python3-googleapis-common-protos-1.62.0-7.fc40.noa 51/90 Installing : openssh-9.3p1-13.fc40.1.i686 52/90 Installing : libedit-3.1-48.20230828cvs.fc40.i686 53/90 Installing : libcbor-0.10.2-3.fc40.i686 54/90 Installing : libfido2-1.14.0-1.fc40.i686 55/90 Installing : openssh-clients-9.3p1-13.fc40.1.i686 56/90 Running scriptlet: openssh-clients-9.3p1-13.fc40.1.i686 56/90 Installing : less-643-1.fc40.i686 57/90 Installing : git-core-2.43.0-1.fc40.i686 58/90 Installing : google-crc32c-1.1.2-7.fc39.i686 59/90 Installing : python3-google-crc32c-1.1.2-9.fc39.i686 60/90 Installing : python3-google-resumable-media-2.6.0-1.fc40.noarch 61/90 Installing : c-ares-1.22.1-1.fc40.i686 62/90 Installing : abseil-cpp-20230802.1-2.fc40.i686 63/90 Installing : python3-GitPython-3.1.40-1.fc40.noarch 64/90 Installing : python3-oauth2client-4.1.3-23.fc39.noarch 65/90 Installing : python3-azure-batch-14.0.0-1.fc39.noarch 66/90 Installing : python3-azure-identity-1:1.14.0-1.fc40.noarch 67/90 Installing : python3-nbformat-5.9.1-2.fc39.noarch 68/90 Installing : python3-azure-storage-blob-12.14.1-4.fc39.noarch 69/90 Installing : python3-azure-mgmt-batch-17.0.0-5.fc39.noarch 70/90 Installing : python3-yte-1.5.4-1.fc40.noarch 71/90 Installing : python3-smart_open-6.4.0-1.fc40.noarch 72/90 Installing : python3-toposort-1.10-8.fc40.noarch 73/90 Installing : python3-throttler-1.2.2-7.fc40.noarch 74/90 Installing : python3-tabulate-0.9.0-4.fc39.noarch 75/90 Installing : python3-stopit-1.1.2-8.fc39.noarch 76/90 Installing : python3-slacker-0.14.0-12.fc39.noarch 77/90 Installing : python3-reretry-0.11.8-6.fc40.noarch 78/90 Installing : python3-pulp-2.7.0-3.fc39.noarch 79/90 Installing : python3-humanfriendly-10.0-8.fc39.noarch 80/90 Installing : python3-connection_pool-0.0.3-9.fc39.noarch 81/90 Installing : python3-grpcio-1.48.4-30.fc40.i686 82/90 Installing : python3-grpcio-status-1.48.4-30.fc40.noarch 83/90 Installing : python3-google-api-core-1:2.11.1-5.fc39.noarch 84/90 Installing : python3-google-cloud-core-2.3.3-2.fc39.noarch 85/90 Installing : python3-google-cloud-storage-2.14.0-2.fc40.noarch 86/90 Installing : python3-google-api-client-2:2.112.0-1.fc40.noarch 87/90 Installing : python3-wrapt-1.16.0-1.fc40.i686 88/90 Installing : python3-psutil-5.9.5-2.fc40.i686 89/90 Installing : python3-datrie-0.8.2-22.fc40.i686 90/90 Running scriptlet: python3-datrie-0.8.2-22.fc40.i686 90/90 Installed: abseil-cpp-20230802.1-2.fc40.i686 c-ares-1.22.1-1.fc40.i686 git-core-2.43.0-1.fc40.i686 google-crc32c-1.1.2-7.fc39.i686 grpc-data-1.48.4-30.fc40.noarch less-643-1.fc40.i686 libcbor-0.10.2-3.fc40.i686 libedit-3.1-48.20230828cvs.fc40.i686 libfido2-1.14.0-1.fc40.i686 openssh-9.3p1-13.fc40.1.i686 openssh-clients-9.3p1-13.fc40.1.i686 protobuf-3.19.6-6.fc39.i686 python3-GitPython-3.1.40-1.fc40.noarch python3-adal-1.2.7-13.fc39.noarch python3-attrs-23.1.0-4.fc39.noarch python3-azure-batch-14.0.0-1.fc39.noarch python3-azure-common-1:1.1.28-6.fc39.noarch python3-azure-core-2:1.28.0-3.fc39.noarch python3-azure-identity-1:1.14.0-1.fc40.noarch python3-azure-mgmt-batch-17.0.0-5.fc39.noarch python3-azure-mgmt-core-1:1.3.2-9.fc39.noarch python3-azure-storage-blob-12.14.1-4.fc39.noarch python3-boto-2.49.0-18.fc39.noarch python3-cachetools-5.3.2-1.fc40.noarch python3-certifi-2023.05.07-2.fc39.noarch python3-cffi-1.16.0-1.fc40.i686 python3-connection_pool-0.0.3-9.fc39.noarch python3-cryptography-41.0.5-2.fc40.i686 python3-datrie-0.8.2-22.fc40.i686 python3-dpath-2.1.4-3.fc39.noarch python3-fasteners-0.19-2.fc40.noarch python3-fastjsonschema-2.18.0-1.fc40.noarch python3-gitdb-4.0.10-3.fc39.noarch python3-google-api-client-2:2.112.0-1.fc40.noarch python3-google-api-core-1:2.11.1-5.fc39.noarch python3-google-auth-1:2.26.0-1.fc40.noarch python3-google-auth-httplib2-0.2.0-1.fc40.noarch python3-google-cloud-core-2.3.3-2.fc39.noarch python3-google-cloud-storage-2.14.0-2.fc40.noarch python3-google-crc32c-1.1.2-9.fc39.i686 python3-google-resumable-media-2.6.0-1.fc40.noarch python3-googleapis-common-protos-1.62.0-7.fc40.noarch python3-grpcio-1.48.4-30.fc40.i686 python3-grpcio-status-1.48.4-30.fc40.noarch python3-httplib2-0.21.0-4.fc39.noarch python3-humanfriendly-10.0-8.fc39.noarch python3-isodate-0.6.1-9.fc39.noarch python3-jsonschema-4.19.1-1.fc40.noarch python3-jsonschema-specifications-2023.11.2-1.fc40.noarch python3-jupyter-core-5.1.0-5.fc39.noarch python3-jwt-2.6.0-4.fc39.noarch python3-jwt+crypto-2.6.0-4.fc39.noarch python3-msal-1.26.0-2.fc40.noarch python3-msal-extensions-1.0.0-7.fc39.noarch python3-msrest-0.7.1-8.20221014git2d8fd04.fc39.noarch python3-msrestazure-0.6.4-18.fc39.noarch python3-nbformat-5.9.1-2.fc39.noarch python3-oauth2client-4.1.3-23.fc39.noarch python3-oauthlib-3.2.2-1.fc40.noarch python3-plac-1.4.2-3.fc40.noarch python3-platformdirs-3.11.0-1.fc40.noarch python3-ply-3.11-20.fc39.noarch python3-portalocker-2.8.2-2.fc40.noarch python3-protobuf-3.19.6-6.fc39.i686 python3-psutil-5.9.5-2.fc40.i686 python3-pulp-2.7.0-3.fc39.noarch python3-pyOpenSSL-23.2.0-1.fc40.noarch python3-pyasn1-0.5.1-1.fc40.noarch python3-pyasn1-modules-0.5.1-1.fc40.noarch python3-pycparser-2.20-12.fc40.noarch python3-pyparsing-3.1.1-1.fc40.noarch python3-referencing-0.31.1-1.fc40.noarch python3-requests-oauthlib-1.3.1-6.fc39.noarch python3-reretry-0.11.8-6.fc40.noarch python3-rpds-py-0.16.2-1.fc40.i686 python3-rsa-4.9-3.fc39.noarch python3-slacker-0.14.0-12.fc39.noarch python3-smart_open-6.4.0-1.fc40.noarch python3-smmap-5.0.0-6.fc39.noarch python3-stopit-1.1.2-8.fc39.noarch python3-tabulate-0.9.0-4.fc39.noarch python3-throttler-1.2.2-7.fc40.noarch python3-toposort-1.10-8.fc40.noarch python3-traitlets-5.11.2-1.fc40.noarch python3-typing-extensions-4.9.0-1.fc40.noarch python3-uritemplate-4.1.1-6.fc39.noarch python3-wrapt-1.16.0-1.fc40.i686 python3-yte-1.5.4-1.fc40.noarch python3-zombie-imp-0.0.2-3.fc40.noarch re2-1:20220601-3.fc39.i686 Complete! Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1704412800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.WcOaJH + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement satisfied: sphinx-argparse (installed: sphinx-argparse 0.4.0) Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement satisfied: sphinx_rtd_theme (installed: sphinx_rtd_theme 2.0.0) Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement satisfied: myst-parser (installed: myst-parser 2.0.0) Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-7.32.4/snakemake-7.32.4.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.2) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.1) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.5) Handling pulp >=2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp >=2.0 (installed: pulp 2.7.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests (installed: requests 2.28.2) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open >=3.0 (installed: smart-open 6.4.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort >=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.4) Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-storage-blob ; extra == 'azure' (installed: azure-storage-blob 12.14.1) Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-batch ; extra == 'azure' (installed: azure-batch 14.0.0) Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-core ; extra == 'azure' (installed: azure-core 1.28.0) Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-identity ; extra == 'azure' (installed: azure-identity 1.14.0) Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-mgmt-batch ; extra == 'azure' (installed: azure-mgmt-batch 17.0.0) Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-api-python-client ; extra == 'google-cloud' (installed: google-api-python-client 2.112.0) Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-cloud-storage ; extra == 'google-cloud' (installed: google-cloud-storage 2.14.0) Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-crc32c ; extra == 'google-cloud' (installed: google-crc32c 1.1.2) Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: oauth2client ; extra == 'google-cloud' (installed: oauth2client 4.1.3) Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slacker ; extra == 'messaging' (installed: slacker 0.14.0) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires + rm -rfv snakemake-7.32.4.dist-info/ removed 'snakemake-7.32.4.dist-info/AUTHORS.rst' removed 'snakemake-7.32.4.dist-info/LICENSE.md' removed 'snakemake-7.32.4.dist-info/METADATA' removed 'snakemake-7.32.4.dist-info/top_level.txt' removed 'snakemake-7.32.4.dist-info/entry_points.txt' removed directory 'snakemake-7.32.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 95 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 195 kB/s | 3.8 kB 00:00 local 236 kB/s | 3.8 kB 00:00 Package python3-jinja2-3.1.2-6.fc40.noarch is already installed. Package python3-yte-1.5.4-1.fc40.noarch is already installed. Package librsvg2-tools-2.57.1-1.fc40.i686 is already installed. Package texlive-xindy-11:svn65958-77.fc39.i686 is already installed. Package help2man-1.49.3-3.fc39.noarch is already installed. Package latexmk-4.82-1.fc40.noarch is already installed. Package make-1:4.4.1-2.fc39.i686 is already installed. Package pyproject-rpm-macros-1.11.0-1.fc40.noarch is already installed. Package python3-devel-3.12.1-2.fc40.i686 is already installed. Package python3-devel-3.12.1-2.fc40.i686 is already installed. Package python3-sphinx-latex-1:7.2.6-4.fc40.noarch is already installed. Package python3-appdirs-1.4.4-11.fc39.noarch is already installed. Package python3-azure-batch-14.0.0-1.fc39.noarch is already installed. Package python3-azure-core-2:1.28.0-3.fc39.noarch is already installed. Package python3-azure-identity-1:1.14.0-1.fc40.noarch is already installed. Package python3-azure-mgmt-batch-17.0.0-5.fc39.noarch is already installed. Package python3-azure-storage-blob-12.14.1-4.fc39.noarch is already installed. Package python3-boto3-1.34.12-1.fc40.noarch is already installed. Package python3-configargparse-1.7-1.fc40.noarch is already installed. Package python3-configargparse-1.7-1.fc40.noarch is already installed. Package python3-connection_pool-0.0.3-9.fc39.noarch is already installed. Package python3-datrie-0.8.2-22.fc40.i686 is already installed. Package python3-docutils-0.20.1-1.fc40.noarch is already installed. Package python3-GitPython-3.1.40-1.fc40.noarch is already installed. Package python3-google-api-client-2:2.112.0-1.fc40.noarch is already installed. Package python3-google-cloud-storage-2.14.0-2.fc40.noarch is already installed. Package python3-google-crc32c-1.1.2-9.fc39.i686 is already installed. Package python3-humanfriendly-10.0-8.fc39.noarch is already installed. Package python3-jsonschema-4.19.1-1.fc40.noarch is already installed. Package python3-myst-parser-2.0.0-3.fc40.noarch is already installed. Package python3-nbformat-5.9.1-2.fc39.noarch is already installed. Package python3-oauth2client-4.1.3-23.fc39.noarch is already installed. Package python3-packaging-23.2-2.fc40.noarch is already installed. Package python3-pandas-1.5.3-7.fc39~bootstrap.i686 is already installed. Package python3-pip-23.3.1-2.fc40.noarch is already installed. Package python3-psutil-5.9.5-2.fc40.i686 is already installed. Package python3-pulp-2.7.0-3.fc39.noarch is already installed. Package python3-pygments-2.17.2-1.fc40.noarch is already installed. Package python3-pytest-7.4.3-1.fc40.noarch is already installed. Package python3-pyyaml-6.0.1-11.fc39.i686 is already installed. Package python3-requests-2.28.2-7.fc40.noarch is already installed. Package python3-requests-mock-1.10.0-5.fc39.noarch is already installed. Package python3-reretry-0.11.8-6.fc40.noarch is already installed. Package python3-setuptools-68.2.2-1.fc40.noarch is already installed. Package python3-slacker-0.14.0-12.fc39.noarch is already installed. Package python3-smart_open-6.4.0-1.fc40.noarch is already installed. Package python3-sphinx-1:7.2.6-4.fc40.noarch is already installed. Package python3-sphinx-argparse-0.4.0-4.fc39.noarch is already installed. Package python3-sphinx_rtd_theme-2.0.0-1.fc40.noarch is already installed. Package python3-stopit-1.1.2-8.fc39.noarch is already installed. Package python3-tabulate-0.9.0-4.fc39.noarch is already installed. Package python3-throttler-1.2.2-7.fc40.noarch is already installed. Package python3-toposort-1.10-8.fc40.noarch is already installed. Package python3-wheel-1:0.41.2-1.fc40.noarch is already installed. Package python3-wrapt-1.16.0-1.fc40.i686 is already installed. Package texlive-xetex-11:svn66203-77.fc39.i686 is already installed. Package vim-filesystem-2:9.0.2190-1.fc40.noarch is already installed. Dependencies resolved. Nothing to do. Complete! Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1704412800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.6gxfgx + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement satisfied: sphinx-argparse (installed: sphinx-argparse 0.4.0) Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement satisfied: sphinx_rtd_theme (installed: sphinx_rtd_theme 2.0.0) Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement satisfied: myst-parser (installed: myst-parser 2.0.0) Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-7.32.4/snakemake-7.32.4.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.2) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.1) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.5) Handling pulp >=2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp >=2.0 (installed: pulp 2.7.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests (installed: requests 2.28.2) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open >=3.0 (installed: smart-open 6.4.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort >=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.4) Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-storage-blob ; extra == 'azure' (installed: azure-storage-blob 12.14.1) Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-batch ; extra == 'azure' (installed: azure-batch 14.0.0) Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-core ; extra == 'azure' (installed: azure-core 1.28.0) Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-identity ; extra == 'azure' (installed: azure-identity 1.14.0) Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-mgmt-batch ; extra == 'azure' (installed: azure-mgmt-batch 17.0.0) Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-api-python-client ; extra == 'google-cloud' (installed: google-api-python-client 2.112.0) Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-cloud-storage ; extra == 'google-cloud' (installed: google-cloud-storage 2.14.0) Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-crc32c ; extra == 'google-cloud' (installed: google-crc32c 1.1.2) Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: oauth2client ; extra == 'google-cloud' (installed: oauth2client 4.1.3) Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slacker ; extra == 'messaging' (installed: slacker 0.14.0) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-buildrequires + rm -rfv snakemake-7.32.4.dist-info/ removed 'snakemake-7.32.4.dist-info/AUTHORS.rst' removed 'snakemake-7.32.4.dist-info/LICENSE.md' removed 'snakemake-7.32.4.dist-info/METADATA' removed 'snakemake-7.32.4.dist-info/entry_points.txt' removed 'snakemake-7.32.4.dist-info/top_level.txt' removed directory 'snakemake-7.32.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.cno57W + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-7.32.4 + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir Processing /builddir/build/BUILD/snakemake-7.32.4 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-gma0nag1/snakemake.egg-info writing /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-gma0nag1/snakemake.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-gma0nag1/snakemake.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-gma0nag1/snakemake.egg-info/entry_points.txt writing requirements to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-gma0nag1/snakemake.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-gma0nag1/snakemake.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-gma0nag1/snakemake.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-gma0nag1/snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-gma0nag1/snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-gma0nag1/snakemake-7.32.4.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: snakemake Building wheel for snakemake (pyproject.toml): started Running command Building wheel for snakemake (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/snakemake copying snakemake/wrapper.py -> build/lib/snakemake copying snakemake/workflow.py -> build/lib/snakemake copying snakemake/utils.py -> build/lib/snakemake copying snakemake/target_jobs.py -> build/lib/snakemake copying snakemake/stats.py -> build/lib/snakemake copying snakemake/sourcecache.py -> build/lib/snakemake copying snakemake/shell.py -> build/lib/snakemake copying snakemake/script.py -> build/lib/snakemake copying snakemake/scheduler.py -> build/lib/snakemake copying snakemake/rules.py -> build/lib/snakemake copying snakemake/ruleinfo.py -> build/lib/snakemake copying snakemake/resources.py -> build/lib/snakemake copying snakemake/profiles.py -> build/lib/snakemake copying snakemake/persistence.py -> build/lib/snakemake copying snakemake/path_modifier.py -> build/lib/snakemake copying snakemake/parser.py -> build/lib/snakemake copying snakemake/output_index.py -> build/lib/snakemake copying snakemake/notebook.py -> build/lib/snakemake copying snakemake/modules.py -> build/lib/snakemake copying snakemake/logging.py -> build/lib/snakemake copying snakemake/jobs.py -> build/lib/snakemake copying snakemake/io.py -> build/lib/snakemake copying snakemake/interfaces.py -> build/lib/snakemake copying snakemake/gui.py -> build/lib/snakemake copying snakemake/exceptions.py -> build/lib/snakemake copying snakemake/decorators.py -> build/lib/snakemake copying snakemake/dag.py -> build/lib/snakemake copying snakemake/cwl.py -> build/lib/snakemake copying snakemake/checkpoints.py -> build/lib/snakemake copying snakemake/benchmark.py -> build/lib/snakemake copying snakemake/_version.py -> build/lib/snakemake copying snakemake/__main__.py -> build/lib/snakemake copying snakemake/__init__.py -> build/lib/snakemake creating build/lib/snakemake/unit_tests copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests creating build/lib/snakemake/template_rendering copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering creating build/lib/snakemake/report copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report copying snakemake/report/__init__.py -> build/lib/snakemake/report creating build/lib/snakemake/remote copying snakemake/remote/zenodo.py -> build/lib/snakemake/remote copying snakemake/remote/webdav.py -> build/lib/snakemake/remote copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote copying snakemake/remote/gfal.py -> build/lib/snakemake/remote copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote copying snakemake/remote/__init__.py -> build/lib/snakemake/remote copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote copying snakemake/remote/S3.py -> build/lib/snakemake/remote copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote copying snakemake/remote/GS.py -> build/lib/snakemake/remote copying snakemake/remote/FTP.py -> build/lib/snakemake/remote copying snakemake/remote/EGA.py -> build/lib/snakemake/remote copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote creating build/lib/snakemake/linting copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting copying snakemake/linting/rules.py -> build/lib/snakemake/linting copying snakemake/linting/links.py -> build/lib/snakemake/linting copying snakemake/linting/__init__.py -> build/lib/snakemake/linting creating build/lib/snakemake/executors copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors copying snakemake/executors/google_lifesciences.py -> build/lib/snakemake/executors copying snakemake/executors/ga4gh_tes.py -> build/lib/snakemake/executors copying snakemake/executors/flux.py -> build/lib/snakemake/executors copying snakemake/executors/common.py -> build/lib/snakemake/executors copying snakemake/executors/azure_batch.py -> build/lib/snakemake/executors copying snakemake/executors/__init__.py -> build/lib/snakemake/executors creating build/lib/snakemake/deployment copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment creating build/lib/snakemake/common copying snakemake/common/tbdstring.py -> build/lib/snakemake/common copying snakemake/common/__init__.py -> build/lib/snakemake/common creating build/lib/snakemake/caching copying snakemake/caching/remote.py -> build/lib/snakemake/caching copying snakemake/caching/local.py -> build/lib/snakemake/caching copying snakemake/caching/hash.py -> build/lib/snakemake/caching copying snakemake/caching/__init__.py -> build/lib/snakemake/caching creating build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates creating build/lib/snakemake/report/template copying snakemake/report/template/__init__.py -> build/lib/snakemake/report/template creating build/lib/snakemake/report/data copying snakemake/report/data/timeline.py -> build/lib/snakemake/report/data copying snakemake/report/data/runtimes.py -> build/lib/snakemake/report/data copying snakemake/report/data/rules.py -> build/lib/snakemake/report/data copying snakemake/report/data/rulegraph.py -> build/lib/snakemake/report/data copying snakemake/report/data/results.py -> build/lib/snakemake/report/data copying snakemake/report/data/packages.py -> build/lib/snakemake/report/data copying snakemake/report/data/common.py -> build/lib/snakemake/report/data copying snakemake/report/data/categories.py -> build/lib/snakemake/report/data copying snakemake/report/data/__init__.py -> build/lib/snakemake/report/data creating build/lib/snakemake/report/template/components copying snakemake/report/template/components/__init__.py -> build/lib/snakemake/report/template/components creating build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/slurm_submit.py -> build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/slurm_jobstep.py -> build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/__init__.py -> build/lib/snakemake/executors/slurm copying snakemake/report.css -> build/lib/snakemake copying snakemake/gui.html -> build/lib/snakemake copying snakemake/executors/jobscript.sh -> build/lib/snakemake/executors copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/report/template/style.css -> build/lib/snakemake/report/template copying snakemake/report/template/index.html.jinja2 -> build/lib/snakemake/report/template copying snakemake/report/template/logo.svg -> build/lib/snakemake/report/template copying snakemake/report/template/components/subcategory.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/stats.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/search_results.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/rule_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/rule_graph.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/result_view_button.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/result_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/report_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/navbar.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/menu.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/list_item.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/list_heading.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/icon.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/content.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/common.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/category.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/button.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/breadcrumbs.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/app.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/abstract_results.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/abstract_menu.js -> build/lib/snakemake/report/template/components UPDATING build/lib/snakemake/_version.py set build/lib/snakemake/_version.py to '7.32.4' installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686 creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/_version.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/gui.html -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/report.css -> build/bdist.linux-i686/wheel/snakemake creating build/bdist.linux-i686/wheel/snakemake/caching copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-i686/wheel/snakemake/caching copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-i686/wheel/snakemake/caching copying build/lib/snakemake/caching/local.py -> build/bdist.linux-i686/wheel/snakemake/caching copying build/lib/snakemake/caching/remote.py -> build/bdist.linux-i686/wheel/snakemake/caching creating build/bdist.linux-i686/wheel/snakemake/common copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-i686/wheel/snakemake/common copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-i686/wheel/snakemake/common creating build/bdist.linux-i686/wheel/snakemake/deployment copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-i686/wheel/snakemake/deployment copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-i686/wheel/snakemake/deployment copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-i686/wheel/snakemake/deployment copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-i686/wheel/snakemake/deployment copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-i686/wheel/snakemake/deployment creating build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-i686/wheel/snakemake/executors creating build/bdist.linux-i686/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/__init__.py -> build/bdist.linux-i686/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/slurm_jobstep.py -> build/bdist.linux-i686/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/slurm_submit.py -> build/bdist.linux-i686/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/azure_batch.py -> build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/common.py -> build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/flux.py -> build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/ga4gh_tes.py -> build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences.py -> build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-i686/wheel/snakemake/executors creating build/bdist.linux-i686/wheel/snakemake/linting copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-i686/wheel/snakemake/linting copying build/lib/snakemake/linting/links.py -> build/bdist.linux-i686/wheel/snakemake/linting copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-i686/wheel/snakemake/linting copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-i686/wheel/snakemake/linting creating build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-i686/wheel/snakemake/remote creating build/bdist.linux-i686/wheel/snakemake/report creating build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/__init__.py -> build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/categories.py -> build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/common.py -> build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/packages.py -> build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/results.py -> build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/rulegraph.py -> build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/rules.py -> build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/runtimes.py -> build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/timeline.py -> build/bdist.linux-i686/wheel/snakemake/report/data creating build/bdist.linux-i686/wheel/snakemake/report/template copying build/lib/snakemake/report/template/logo.svg -> build/bdist.linux-i686/wheel/snakemake/report/template copying build/lib/snakemake/report/template/index.html.jinja2 -> build/bdist.linux-i686/wheel/snakemake/report/template copying build/lib/snakemake/report/template/style.css -> build/bdist.linux-i686/wheel/snakemake/report/template creating build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/abstract_menu.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/abstract_results.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/app.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/breadcrumbs.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/button.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/category.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/common.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/content.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/icon.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/list_heading.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/list_item.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/menu.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/navbar.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/report_info.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/result_info.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/result_view_button.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/rule_graph.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/rule_info.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/search_results.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/stats.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/subcategory.js -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/__init__.py -> build/bdist.linux-i686/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/__init__.py -> build/bdist.linux-i686/wheel/snakemake/report/template copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-i686/wheel/snakemake/report copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-i686/wheel/snakemake/report creating build/bdist.linux-i686/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-i686/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-i686/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-i686/wheel/snakemake/template_rendering creating build/bdist.linux-i686/wheel/snakemake/unit_tests creating build/bdist.linux-i686/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-i686/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-i686/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-i686/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-i686/wheel/snakemake/unit_tests copying build/lib/snakemake/__init__.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/__main__.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/benchmark.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/cwl.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/dag.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/decorators.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/exceptions.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/gui.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/interfaces.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/io.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/jobs.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/logging.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/modules.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/notebook.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/output_index.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/parser.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/persistence.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/profiles.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/resources.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/rules.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/scheduler.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/script.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/shell.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/stats.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/utils.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/workflow.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/wrapper.py -> build/bdist.linux-i686/wheel/snakemake running install_egg_info running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Copying snakemake.egg-info to build/bdist.linux-i686/wheel/snakemake-7.32.4-py3.12.egg-info running install_scripts creating build/bdist.linux-i686/wheel/snakemake-7.32.4.dist-info/WHEEL creating '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-wheel-b3q4m52x/.tmp-z0g93btv/snakemake-7.32.4-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'snakemake/__init__.py' adding 'snakemake/__main__.py' adding 'snakemake/_version.py' adding 'snakemake/benchmark.py' adding 'snakemake/checkpoints.py' adding 'snakemake/cwl.py' adding 'snakemake/dag.py' adding 'snakemake/decorators.py' adding 'snakemake/exceptions.py' adding 'snakemake/gui.html' adding 'snakemake/gui.py' adding 'snakemake/interfaces.py' adding 'snakemake/io.py' adding 'snakemake/jobs.py' adding 'snakemake/logging.py' adding 'snakemake/modules.py' adding 'snakemake/notebook.py' adding 'snakemake/output_index.py' adding 'snakemake/parser.py' adding 'snakemake/path_modifier.py' adding 'snakemake/persistence.py' adding 'snakemake/profiles.py' adding 'snakemake/report.css' adding 'snakemake/resources.py' adding 'snakemake/ruleinfo.py' adding 'snakemake/rules.py' adding 'snakemake/scheduler.py' adding 'snakemake/script.py' adding 'snakemake/shell.py' adding 'snakemake/sourcecache.py' adding 'snakemake/stats.py' adding 'snakemake/target_jobs.py' adding 'snakemake/utils.py' adding 'snakemake/workflow.py' adding 'snakemake/wrapper.py' adding 'snakemake/caching/__init__.py' adding 'snakemake/caching/hash.py' adding 'snakemake/caching/local.py' adding 'snakemake/caching/remote.py' adding 'snakemake/common/__init__.py' adding 'snakemake/common/tbdstring.py' adding 'snakemake/deployment/__init__.py' adding 'snakemake/deployment/conda.py' adding 'snakemake/deployment/containerize.py' adding 'snakemake/deployment/env_modules.py' adding 'snakemake/deployment/singularity.py' adding 'snakemake/executors/__init__.py' adding 'snakemake/executors/azure_batch.py' adding 'snakemake/executors/common.py' adding 'snakemake/executors/flux.py' adding 'snakemake/executors/ga4gh_tes.py' adding 'snakemake/executors/google_lifesciences.py' adding 'snakemake/executors/google_lifesciences_helper.py' adding 'snakemake/executors/jobscript.sh' adding 'snakemake/executors/slurm/__init__.py' adding 'snakemake/executors/slurm/slurm_jobstep.py' adding 'snakemake/executors/slurm/slurm_submit.py' adding 'snakemake/linting/__init__.py' adding 'snakemake/linting/links.py' adding 'snakemake/linting/rules.py' adding 'snakemake/linting/snakefiles.py' adding 'snakemake/remote/AzBlob.py' adding 'snakemake/remote/EGA.py' adding 'snakemake/remote/FTP.py' adding 'snakemake/remote/GS.py' adding 'snakemake/remote/HTTP.py' adding 'snakemake/remote/NCBI.py' adding 'snakemake/remote/S3.py' adding 'snakemake/remote/S3Mocked.py' adding 'snakemake/remote/SFTP.py' adding 'snakemake/remote/XRootD.py' adding 'snakemake/remote/__init__.py' adding 'snakemake/remote/dropbox.py' adding 'snakemake/remote/gfal.py' adding 'snakemake/remote/gridftp.py' adding 'snakemake/remote/iRODS.py' adding 'snakemake/remote/webdav.py' adding 'snakemake/remote/zenodo.py' adding 'snakemake/report/__init__.py' adding 'snakemake/report/rulegraph_spec.py' adding 'snakemake/report/data/__init__.py' adding 'snakemake/report/data/categories.py' adding 'snakemake/report/data/common.py' adding 'snakemake/report/data/packages.py' adding 'snakemake/report/data/results.py' adding 'snakemake/report/data/rulegraph.py' adding 'snakemake/report/data/rules.py' adding 'snakemake/report/data/runtimes.py' adding 'snakemake/report/data/timeline.py' adding 'snakemake/report/template/__init__.py' adding 'snakemake/report/template/index.html.jinja2' adding 'snakemake/report/template/logo.svg' adding 'snakemake/report/template/style.css' adding 'snakemake/report/template/components/__init__.py' adding 'snakemake/report/template/components/abstract_menu.js' adding 'snakemake/report/template/components/abstract_results.js' adding 'snakemake/report/template/components/app.js' adding 'snakemake/report/template/components/breadcrumbs.js' adding 'snakemake/report/template/components/button.js' adding 'snakemake/report/template/components/category.js' adding 'snakemake/report/template/components/common.js' adding 'snakemake/report/template/components/content.js' adding 'snakemake/report/template/components/icon.js' adding 'snakemake/report/template/components/list_heading.js' adding 'snakemake/report/template/components/list_item.js' adding 'snakemake/report/template/components/menu.js' adding 'snakemake/report/template/components/navbar.js' adding 'snakemake/report/template/components/report_info.js' adding 'snakemake/report/template/components/result_info.js' adding 'snakemake/report/template/components/result_view_button.js' adding 'snakemake/report/template/components/rule_graph.js' adding 'snakemake/report/template/components/rule_info.js' adding 'snakemake/report/template/components/search_results.js' adding 'snakemake/report/template/components/stats.js' adding 'snakemake/report/template/components/subcategory.js' adding 'snakemake/template_rendering/__init__.py' adding 'snakemake/template_rendering/jinja2.py' adding 'snakemake/template_rendering/yte.py' adding 'snakemake/unit_tests/__init__.py' adding 'snakemake/unit_tests/templates/__init__.py' adding 'snakemake/unit_tests/templates/common.py.jinja2' adding 'snakemake/unit_tests/templates/ruletest.py.jinja2' adding 'snakemake-7.32.4.dist-info/AUTHORS.rst' adding 'snakemake-7.32.4.dist-info/LICENSE.md' adding 'snakemake-7.32.4.dist-info/METADATA' adding 'snakemake-7.32.4.dist-info/WHEEL' adding 'snakemake-7.32.4.dist-info/entry_points.txt' adding 'snakemake-7.32.4.dist-info/top_level.txt' adding 'snakemake-7.32.4.dist-info/RECORD' removing build/bdist.linux-i686/wheel Building wheel for snakemake (pyproject.toml): finished with status 'done' Created wheel for snakemake: filename=snakemake-7.32.4-py3-none-any.whl size=380737 sha256=41de792549ed495ffb1d247493ac027c4562811976c7e4926e356b0e9fb7164f Stored in directory: /builddir/.cache/pip/wheels/53/8b/cb/3dce719624720fd97280e70d5666cec6215f6d7c6704f015ae Successfully built snakemake + find docs -type f -name '*.svg' + read -r fn ++ dirname docs/executor_tutorial/workflow/quals.svg ++ basename docs/executor_tutorial/workflow/quals.svg .svg + rsvg-convert --format=pdf --output=docs/executor_tutorial/workflow/quals.pdf docs/executor_tutorial/workflow/quals.svg + read -r fn + find docs/executor_tutorial -type f -exec gawk '/\.svg/ { print FILENAME; nextfile }' '{}' + + xargs -r -t sed -r -i 's/(image::.*)\.svg/\1\.pdf/' sed -r -i 's/(image::.*)\.svg/\1\.pdf/' docs/executor_tutorial/google_lifesciences.rst docs/executor_tutorial/azure_batch.rst + PYTHONPATH=/builddir/build/BUILD/snakemake-7.32.4 + /usr/bin/make -O -j4 V=1 VERBOSE=1 -C docs latexpdf 'SPHINXOPTS=-j${RPM_BUILD_NCPUS}' make: Entering directory '/builddir/build/BUILD/snakemake-7.32.4/docs' sphinx-build -b latex -d _build/doctrees -j4 . _build/latex Running Sphinx v7.2.6 making output directory... done myst v2.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=set(), disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... building [latex]: all documents updating environment: [new config] 38 added, 0 changed, 0 removed reading sources... [100%] tutorial/short .. tutorial/tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done copying TeX support files... copying TeX support files... done processing Snakemake.tex... index getting_started/installation tutorial/tutorial tutorial/setup tutorial/basics tutorial/advanced tutorial/additional_features tutorial/short executor_tutorial/tutorial executor_tutorial/azure_batch executor_tutorial/azure_aks executor_tutorial/google_lifesciences executor_tutorial/flux snakefiles/best_practices executing/cli executing/cluster executing/cloud executing/grouping executing/caching executing/interoperability executing/monitoring snakefiles/writing_snakefiles snakefiles/rules snakefiles/configuration snakefiles/modularization snakefiles/remote_files snakefiles/utils snakefiles/deployment snakefiles/reporting snakefiles/testing snakefiles/foreign_wms project_info/citations project_info/more_resources project_info/faq project_info/contributing project_info/authors project_info/history project_info/license resolving references... done writing... done copying images... [100%] project_info/img/idea.png build succeeded, 491 warnings. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). 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How can I avoid system /tmp to be used when combining singularity and conda? ------------------------------------------------------ /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:688: WARNING: Title underline too short. 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increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2475: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2493: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2502: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2507: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2533: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2546: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2552: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2562: 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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2768: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2789: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2808: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2837: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2937: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2946: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:18: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:25: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:32: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:53: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:63: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:70: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:75: WARNING: duplicate label documentation, other 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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:126: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:131: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:140: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:150: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:157: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:164: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:172: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:179: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:184: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:191: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:198: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:204: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:211: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:218: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:225: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:234: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:241: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:249: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:255: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:261: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:270: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:280: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:287: WARNING: duplicate label performance improvements, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:292: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:299: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:304: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:313: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:320: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:327: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:333: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:338: WARNING: duplicate label performance improvements, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:345: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:350: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:358: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:364: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:373: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:381: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:401: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:409: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:414: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:426: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:433: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:443: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:453: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:460: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:467: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:474: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:481: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:486: WARNING: duplicate label performance improvements, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:493: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:501: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:509: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:514: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:522: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:531: WARNING: duplicate label performance improvements, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:538: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:544: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:552: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:557: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:562: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:570: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:577: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:594: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:599: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:606: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:611: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:620: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:628: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:636: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:641: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:649: WARNING: duplicate label features, other 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'job-grouping' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/configuration.rst:35: WARNING: undefined label: 'api_reference_snakemake' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/utils.rst:7: WARNING: undefined label: 'utils-api' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/foreign_wms.rst:30: WARNING: undefined label: 'snakefiles-local-rule' WARNING: Could not fetch remote image: https://img.shields.io/badge/Gitpod-ready--to--code-blue?logo=gitpod [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /badge/Gitpod-ready--to--code-blue?logo=gitpod (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/conda/dn/bioconda/snakemake.svg?label=Bioconda [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /conda/dn/bioconda/snakemake.svg?label=Bioconda (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/pypi/pyversions/snakemake.svg [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /pypi/pyversions/snakemake.svg (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/pypi/v/snakemake.svg [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /pypi/v/snakemake.svg (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/github/workflow/status/snakemake/snakemake/Publish%20to%20Docker%20Hub?color=blue&label=docker%20container&branch=main [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /github/workflow/status/snakemake/snakemake/Publish%20to%20Docker%20Hub?color=blue&label=docker%20container&branch=main (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://github.com/snakemake/snakemake/workflows/CI/badge.svg?branch=main&label=tests [HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /snakemake/snakemake/workflows/CI/badge.svg?branch=main&label=tests (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/badge/stack-overflow-orange.svg [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /badge/stack-overflow-orange.svg (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/twitter/follow/johanneskoester.svg?style=social&label=Follow [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /twitter/follow/johanneskoester.svg?style=social&label=Follow (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/discord/753690260830945390?label=discord%20chat [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /discord/753690260830945390?label=discord%20chat (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/github/stars/snakemake/snakemake?style=social [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /github/stars/snakemake/snakemake?style=social (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/badge/snakemake-≥5.6.0-brightgreen.svg?style=flat [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /badge/snakemake-%E2%89%A55.6.0-brightgreen.svg?style=flat (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:266: WARNING: Lexing literal_block '# required env variables\nexport AZ_BLOB_PREFIX=snakemake-tutorial\nexport AZ_BATCH_ACCOUNT_URL="${batch_account_url}"\nexport AZ_BATCH_ACCOUNT_KEY="${az_batch_account_key}"\nexport AZ_BLOB_ACCOUNT_URL="${storage_account_url_with_sas}"\n\n# optional environment variables with defaults listed\n\n# network and identity\n# export BATCH_POOL_SUBNET_ID=\n# export BATCH_MANAGED_IDENTITY_RESOURCE_ID=\n# export BATCH_MANAGED_IDENTITY_CLIENT_ID=\n\n# if unset, default is "classic"\n# export BATCH_NODE_COMMUNICATION_SIMPLIFIED=true\n\n# don\'t recommend changing\n# export BATCH_POOL_IMAGE_PUBLISHER=microsoft-azure-batch\n# export BATCH_POOL_IMAGE_OFFER=ubuntu-server-container\n# export BATCH_POOL_IMAGE_SKU=20-04-lts\n# export BATCH_POOL_RESOURCE_FILE_PREFIX=resource-files\n\n# export BATCH_POOL_VM_CONTAINER_IMAGE=ubuntu\n# export BATCH_POOL_VM_NODE_AGENT_SKU_ID="batch.node.ubuntu 20.04"\n\n# can be used to add a startup task to the batch nodes formatted as an sas url to a bash script\n# export BATCH_NODE_START_TASK_SAS_URL=\n\n# can be useful to alter task distribution across nodes\n\n# export BATCH_POOL_VM_SIZE=Standard_D2_v3\n# export BATCH_NODE_FILL_TYPE=spread\n# export BATCH_POOL_NODE_COUNT=1\n# export BATCH_TASKS_PER_NODE=1\n\n# container registry configuration to pull container image from custom registry\n# export BATCH_CONTAINER_REGISTRY_URL=\n# export BATCH_CONTAINER_REGISTRY_USER=\n# export BATCH_CONTAINER_REGISTRY_PASS=\n\nsnakemake \\\n --jobs 3 \\\n -rpf --verbose --default-remote-prefix $AZ_BLOB_PREFIX \\\n --use-conda \\\n --default-remote-provider AzBlob \\\n --envvars AZ_BLOB_ACCOUNT_URL \\\n --az-batch \\\n --container-image snakemake/snakemake \\\n --az-batch-account-url $AZ_BATCH_ACCOUNT_URL' as "console" resulted in an error at token: "'". 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[44] [45] [46] Overfull \hbox (16.155pt too wide) in paragraph at lines 2923--2925 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_IMAGE_PUBLISHER| Overfull \hbox (40.465pt too wide) in paragraph at lines 2953--2955 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_VM_CONTAINER_IMAGE| Overfull \hbox (52.17499pt too wide) in paragraph at lines 2963--2965 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_VM_NODE_AGENT_SKU_ID| Overfull \hbox (42.36499pt too wide) in paragraph at lines 3003--3005 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_RESOURCE_FILE_PREFIX| Overfull \hbox (34.435pt too wide) in paragraph at lines 3013--3015 []|\TU/FreeSerif(0)/m/n/10 BATCH_NODE_START_TASK_SAS_URL| Overfull \hbox (72.44499pt too wide) in paragraph at lines 3033--3035 []|\TU/FreeSerif(0)/m/n/10 BATCH_NODE_COMMUNICATION_SIMPLIFIED| Overfull \hbox (67.97499pt too wide) in paragraph at lines 3053--3055 []|\TU/FreeSerif(0)/m/n/10 BATCH_MANAGED_IDENTITY_RESOURCE_ID| Overfull \hbox (51.485pt too wide) in paragraph at lines 3063--3065 []|\TU/FreeSerif(0)/m/n/10 BATCH_MANAGED_IDENTITY_CLIENT_ID| Overfull \hbox (28.965pt too wide) in paragraph at lines 3073--3075 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_URL| Overfull \hbox (34.045pt too wide) in paragraph at lines 3083--3085 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_USER| Overfull \hbox (31.625pt too wide) in paragraph at lines 3093--3095 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_PASS| [47] Overfull \vbox (0.72789pt too high) detected at line 3160 [48] Overfull \vbox (1.98596pt too high) detected at line 3201 [49] Underfull \vbox (badness 10000) detected at line 3201 Overfull \vbox (1.98598pt too high) detected at line 3201 [50] Underfull \hbox (badness 10000) in paragraph at lines 3235--3239 \TU/FreeSerif(0)/m/n/10 The azure batch executor supports autoscaling of the ba tch nodes by including the flag [51] LaTeX Warning: Hyper reference `tutorial/setup:tutorial-setup' on page 52 undef ined on input line 3296. [52] Underfull \hbox (badness 10000) in paragraph at lines 3376--3388 []\TU/FreeSerif(0)/m/n/10 There is a lot going on here, so let’s unpack it: thi s creates an [][]auto-scaling Kubernetes cluster[][] [53] [54] [55] [56] LaTeX Warning: Hyper reference `tutorial/basics:tutorial-basics' on page 57 und efined on input line 3727. 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[240] [241] [242] [243] [244] Underfull \hbox (badness 10000) in paragraph at lines 16974--16976 []\TU/FreeSerif(0)/m/n/10 provide temporary IPYTHONDIR for notebook execution i n order to avoid race conditions in [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255] [256] [257] [258] [259] [260] [261] [262] [263] [264] [265] [266] [267] [268] Underfull \hbox (badness 10000) in paragraph at lines 19438--19441 []\TU/FreeSerif(0)/m/n/10 Allow URL to local git repo with wrapper directive (\ TU/FreeMono(0)/m/n/10 git+file:///path/to/your/repo/ [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] Underfull \hbox (badness 10000) in paragraph at lines 20504--20510 []\TU/FreeSerif(0)/m/n/10 When submitting cluster jobs (either through [][]\TU/ FreeMono(0)/m/n/10 cluster \TU/FreeSerif(0)/m/n/10 or [][]\TU/FreeMono(0)/m/n/1 0 drmaa\TU/FreeSerif(0)/m/n/10 ), you can now use [279] [280] [281] No file Snakemake.ind. Package sphinx Warning: The package pict2e is required for rounded boxes. (sphinx) As it does not seem to be available on your system, (sphinx) options setting radii have all been ignored. Package sphinx Warning: The package ellipse is required for elliptical corners. (sphinx) As it does not seem to be available on your system, (sphinx) all non-straight corners have used circle arcs.. [282] (./Snakemake.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `Snakemake.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) Output written on Snakemake.pdf (286 pages). Transcript written on Snakemake.log. Latexmk: Getting log file 'Snakemake.log' Latexmk: Examining 'Snakemake.fls' Latexmk: Examining 'Snakemake.log' Latexmk: Index file 'Snakemake.idx' was written Latexmk: References changed. Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'Snakemake.pdf' Latexmk: applying rule 'makeindex Snakemake.idx'... Rule 'makeindex Snakemake.idx': Reasons for rerun Category 'other': Rerun of 'makeindex Snakemake.idx' forced or previously required ------------ Run number 1 of rule 'makeindex Snakemake.idx' ------------ ------------ Running 'internal xindy -L english -C utf8 -M sphinx.xdy -o "Snakemake.ind" "Snakemake.idx"' ------------ Latexmk: calling xindy( -L english -C utf8 -M sphinx.xdy -o "Snakemake.ind" "Snakemake.idx" ) Latexmk: applying rule 'pdflatex'... Rule 'pdflatex': Reasons for rerun Changed files or newly in use/created: Snakemake.aux Snakemake.ind Snakemake.out Snakemake.toc ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'xelatex -recorder "Snakemake.tex"' ------------ This is XeTeX, Version 3.141592653-2.6-0.999995 (TeX Live 2023) (preloaded format=xelatex) restricted \write18 enabled. entering extended mode (./Snakemake.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-02-22> (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty Package cmap Warning: pdftex not detected - exiting. ) (/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.sty (/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-xetex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec-xetex.sty (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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(sphinx) All non-straight corners will use circle arcs.. ) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty) (/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty)) (./sphinxlatexnumfig.sty) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty ) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip-2001-04-09.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hxetex.def (/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file Snakemake.idx (./Snakemake.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) *geometry* driver: auto-detecting *geometry* detected driver: xetex (./Snakemake.out) (./Snakemake.out) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1] [2] (./Snakemake.toc) [1] [2] [1] [2] Chapter 1. [3] [4] Chapter 2. [5] [6] Chapter 3. [7] [8] Chapter 4. [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Overfull \vbox (1.78299pt too high) detected at line 2638 [43] [44] [45] [46] Overfull \hbox (16.155pt too wide) in paragraph at lines 2923--2925 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_IMAGE_PUBLISHER| Overfull \hbox (40.465pt too wide) in paragraph at lines 2953--2955 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_VM_CONTAINER_IMAGE| Overfull \hbox (52.17499pt too wide) in paragraph at lines 2963--2965 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_VM_NODE_AGENT_SKU_ID| Overfull \hbox (42.36499pt too wide) in paragraph at lines 3003--3005 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_RESOURCE_FILE_PREFIX| Overfull \hbox (34.435pt too wide) in paragraph at lines 3013--3015 []|\TU/FreeSerif(0)/m/n/10 BATCH_NODE_START_TASK_SAS_URL| Overfull \hbox (72.44499pt too wide) in paragraph at lines 3033--3035 []|\TU/FreeSerif(0)/m/n/10 BATCH_NODE_COMMUNICATION_SIMPLIFIED| Overfull \hbox (67.97499pt too wide) in paragraph at lines 3053--3055 []|\TU/FreeSerif(0)/m/n/10 BATCH_MANAGED_IDENTITY_RESOURCE_ID| Overfull \hbox (51.485pt too wide) in paragraph at lines 3063--3065 []|\TU/FreeSerif(0)/m/n/10 BATCH_MANAGED_IDENTITY_CLIENT_ID| Overfull \hbox (28.965pt too wide) in paragraph at lines 3073--3075 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_URL| Overfull \hbox (34.045pt too wide) in paragraph at lines 3083--3085 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_USER| Overfull \hbox (31.625pt too wide) in paragraph at lines 3093--3095 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_PASS| [47] Overfull \vbox (0.72789pt too high) detected at line 3160 [48] Overfull \vbox (1.98596pt too high) detected at line 3201 [49] Underfull \vbox (badness 10000) detected at line 3201 Overfull \vbox (1.98598pt too high) detected at line 3201 [50] Underfull \hbox (badness 10000) in paragraph at lines 3235--3239 \TU/FreeSerif(0)/m/n/10 The azure batch executor supports autoscaling of the ba tch nodes by including the flag [51] [52] Underfull \hbox (badness 10000) in paragraph at lines 3376--3388 []\TU/FreeSerif(0)/m/n/10 There is a lot going on here, so let’s unpack it: thi s creates an [][]auto-scaling Kubernetes cluster[][] [53] [54] [55] [56] [57] Overfull \vbox (1.98596pt too high) detected at line 3840 [58] [59] [60] Underfull \vbox (badness 10000) detected at line 4080 Overfull \vbox (1.98598pt too high) detected at line 4080 [61] Underfull \vbox (badness 10000) detected at line 4080 Overfull \vbox (1.98598pt too high) detected at line 4080 [62] [63] [64] [65] [66] Underfull \vbox (badness 10000) detected at line 4358 Underfull \vbox (badness 10000) detected at line 4358 [67] Underfull \vbox (badness 10000) detected at line 4358 Overfull \vbox (1.98598pt too high) detected at line 4358 [68] Underfull \vbox (badness 1565) detected at line 4404 [69] [70] Overfull \vbox (2.98596pt too high) detected at line 4504 [71] [72] [73] Underfull \vbox (badness 2126) detected at line 4740 [74] [75] [76] [77] [78] Overfull \vbox (2.033pt too high) detected at line 5158 [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] Overfull \hbox (11.06543pt too wide) in paragraph at lines 5685--5687 []\TU/FreeSerif(0)/m/n/10 Target particular jobs by RULE:WILDCARD1=VALUE,WILDCA RD2=VALUE,… [89] [90] [91] [92] [93] Underfull \hbox (badness 10000) in paragraph at lines 5946--5948 []\TU/FreeSerif(0)/m/n/10 Additional tibanna config e.g. –tibanna-config spot_i nstance=true sub- [94] [95] [96] Underfull \hbox (badness 10000) in paragraph at lines 6273--6273 []\TU/FreeSans(0)/m/n/10 Snakemake re- Overfull \hbox (0.88507pt too wide) in paragraph at lines 6273--6273 []\TU/FreeMono(0)/m/n/10 slurm_partition| Overfull \hbox (3.79732pt too wide) in paragraph at lines 6273--6273 [][]\TU/FreeMono(0)/m/n/10 c\TU/FreeSerif(0)/m/n/10 /[][]\TU/FreeMono(0)/m/n/10 cpus[]per[]task| [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] Underfull \hbox (badness 10000) in paragraph at lines 7013--7017 []\TU/FreeSerif(0)/m/n/10 The azure batch executor supports autoscaling of the batch nodes by including the flag [108] [109] Underfull \hbox (badness 10000) in paragraph at lines 7213--7216 []|\TU/FreeSerif(0)/m/n/10 Snakemake gets the status of panoptes. Underfull \hbox (badness 6859) in paragraph at lines 7213--7216 \TU/FreeSerif(0)/m/n/10 Snakemake continues to run if the status Underfull \hbox (badness 10000) in paragraph at lines 7230--7232 []|\TU/FreeMono(0)/m/n/10 / Overfull \hbox (9.78429pt too wide) in paragraph at lines 7230--7232 \TU/FreeMono(0)/m/n/10 update_workflow_status| [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] Underfull \hbox (badness 5652) in paragraph at lines 8976--8980 \TU/FreeSerif(0)/m/n/10 Snakemake tracks the code that was used to create your files. In combination with [][]\TU/FreeMono(0)/m/n/10 summary \TU/FreeSerif(0)/ m/n/10 or [137] [138] [139] [140] [141] [142] [143] [144] Overfull \vbox (2.64099pt too high) detected at line 9545 [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] Overfull \vbox (0.688pt too high) detected at line 10609 [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] Underfull \hbox (badness 10000) in paragraph at lines 11299--11301 []\TU/FreeSerif(0)/m/n/10 When used in conjunction with \TU/FreeMono(0)/m/n/10 NCBI.RemoteProvider().search()\TU/FreeSerif(0)/m/n/10 , Snakemake and \TU/FreeM ono(0)/m/n/10 NCBI. Overfull \vbox (1.03299pt too high) detected at line 11355 [173] [174] Underfull \hbox (badness 5133) in paragraph at lines 11479--11486 []\TU/FreeSerif(0)/m/n/10 The default location for the configuration file is \T U/FreeMono(0)/m/n/10 ~/.irods/irods_environment.json\TU/FreeSerif(0)/m/n/10 . T he \TU/FreeMono(0)/m/n/10 Re- Underfull \hbox (badness 10000) in paragraph at lines 11479--11486 \TU/FreeMono(0)/m/n/10 moteProvider() \TU/FreeSerif(0)/m/n/10 class accepts the parameter \TU/FreeMono(0)/m/n/10 irods_env_file \TU/FreeSerif(0)/m/n/10 where an alternative path to the [175] [176] [177] Underfull \hbox (badness 10000) in paragraph at lines 11628--11634 \TU/FreeSerif(0)/m/n/10 If you need to access a deposition with restricted acce ss, you have to additionally provide a \TU/FreeMono(0)/m/n/10 re- [178] [179] Underfull \hbox (badness 5878) in paragraph at lines 11786--11792 []\TU/FreeSerif(0)/m/n/10 First, we load a local configuration file. Next, we d efine the module \TU/FreeMono(0)/m/n/10 dna_seq \TU/FreeSerif(0)/m/n/10 to be l oaded from [180] Overfull \vbox (2.98596pt too high) detected at line 11881 [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] Overfull \vbox (2.0pt too high) has occurred while \output is active [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] Underfull \vbox (badness 10000) detected at line 13935 Overfull \vbox (1.98598pt too high) detected at line 13935 [211] [212] Underfull \hbox (badness 10000) in paragraph at lines 14076--14079 []\TU/FreeSerif(0)/m/n/10 Provide hyperlink targets, at least for the first two section levels. For this, use the format [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] Missing character: There is no ⚠ (U+26A0) in font [FreeSansBold.otf]/OT:script= latn;language=dflt;! [240] [241] [242] [243] [244] Underfull \hbox (badness 10000) in paragraph at lines 16974--16976 []\TU/FreeSerif(0)/m/n/10 provide temporary IPYTHONDIR for notebook execution i n order to avoid race conditions in [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255] [256] [257] [258] [259] [260] [261] [262] [263] [264] [265] [266] [267] [268] Underfull \hbox (badness 10000) in paragraph at lines 19438--19441 []\TU/FreeSerif(0)/m/n/10 Allow URL to local git repo with wrapper directive (\ TU/FreeMono(0)/m/n/10 git+file:///path/to/your/repo/ [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] Underfull \hbox (badness 10000) in paragraph at lines 20504--20510 []\TU/FreeSerif(0)/m/n/10 When submitting cluster jobs (either through [][]\TU/ FreeMono(0)/m/n/10 cluster \TU/FreeSerif(0)/m/n/10 or [][]\TU/FreeMono(0)/m/n/1 0 drmaa\TU/FreeSerif(0)/m/n/10 ), you can now use [279] [280] [281] (./Snakemake.ind) Package sphinx Warning: The package pict2e is required for rounded boxes. (sphinx) As it does not seem to be available on your system, (sphinx) options setting radii have all been ignored. Package sphinx Warning: The package ellipse is required for elliptical corners. (sphinx) As it does not seem to be available on your system, (sphinx) all non-straight corners have used circle arcs.. [282] (./Snakemake.aux) ) (see the transcript file for additional information) Output written on Snakemake.pdf (286 pages). Transcript written on Snakemake.log. Latexmk: Getting log file 'Snakemake.log' Latexmk: Examining 'Snakemake.fls' Latexmk: Examining 'Snakemake.log' Latexmk: Index file 'Snakemake.idx' was written Latexmk: Log file says output to 'Snakemake.pdf' Latexmk: Summary of warnings from last run of *latex: =====Latex reported missing or unavailable character(s). =====See log file for details. Latexmk: All targets () are up-to-date make[1]: Leaving directory '/builddir/build/BUILD/snakemake-7.32.4/docs/_build/latex' Latexmk: Missing input file 'Snakemake.toc' (or dependence on it) from following: No file Snakemake.toc. Latexmk: Missing input file 'Snakemake.ind' (or dependence on it) from following: No file Snakemake.ind. Latexmk: ====Undefined refs and citations with line #s in .tex file: Missing character: There is no ⚠ (U+26A0) in font [FreeSansBold.otf]/OT:script= Missing character: There is no ⚠ (U+26A0) in font [FreeSansBold.otf]/OT:script=latn;language=dflt;! + RPM_EC=0 ++ jobs -p + exit 0 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 ++ dirname /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-7.32.4 ++ ls /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir/snakemake-7.32.4-py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=snakemake==7.32.4 + '[' -z snakemake==7.32.4 ']' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir snakemake==7.32.4 make: Entering directory '/builddir/build/BUILD/snakemake-7.32.4/docs' pdflatex finished; the PDF files are in _build/latex. make: Leaving directory '/builddir/build/BUILD/snakemake-7.32.4/docs' Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Zs4Yv7 Using pip 23.3.1 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir Processing ./pyproject-wheeldir/snakemake-7.32.4-py3-none-any.whl Installing collected packages: snakemake Creating /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin changing mode of /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin/snakemake to 755 changing mode of /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin/snakemake-bash-completion to 755 Successfully installed snakemake-7.32.4 + '[' -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin/snakemake /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin/snakemake-bash-completion /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin/snakemake: updating /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin/snakemake-bash-completion: updating + rm -rfv /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages ']' + site_dirs+=("/usr/lib/python3.12/site-packages") + '[' /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages '!=' /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 --record /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/RECORD --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-record + rm -fv /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/RECORD removed '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=2 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-files --output-modules /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-modules --buildroot /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/snakemake-7.32.4-3.fc40.i386-pyproject-record --prefix /usr -l snakemake + install -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/man/man1 + PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages + help2man --no-info '--name=Metapackage for snakemake: azure extras' snakemake + install -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/bash-completion/completions + touch Snakefile + PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages + snakemake --bash-completion + install -t /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/nano -D -m 0644 -p misc/nano/syntax/snakemake.nanorc + install -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles + cp -vrp misc/vim/README.md misc/vim/ftdetect misc/vim/ftplugin misc/vim/syntax /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles 'misc/vim/README.md' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/README.md' 'misc/vim/ftdetect' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/ftdetect' 'misc/vim/ftdetect/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/ftdetect/snakemake.vim' 'misc/vim/ftplugin' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/ftplugin' 'misc/vim/ftplugin/snakemake' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/ftplugin/snakemake' 'misc/vim/ftplugin/snakemake/folding.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/ftplugin/snakemake/folding.vim' 'misc/vim/ftplugin/snakemake/sections.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/ftplugin/snakemake/sections.vim' 'misc/vim/syntax' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/syntax' 'misc/vim/syntax/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/syntax/snakemake.vim' + find /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles -type f -name 'README.*' -print -delete /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/vim/vimfiles/README.md + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 7.32.4-3.fc40 --unique-debug-suffix -7.32.4-3.fc40.i386 --unique-debug-src-base snakemake-7.32.4-3.fc40.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/snakemake-7.32.4 find-debuginfo: starting Extracting debug info from 0 files Creating .debug symlinks for symlinks to ELF files find: ‘debug’: No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.S9VRVG + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-7.32.4 + k='not test_lint[long_run-positive]' + k='not test_lint[long_run-positive] and not test_tibanna' + k='not test_lint[long_run-positive] and not test_tibanna and not test_tes' + k='not test_lint[long_run-positive] and not test_tibanna and not test_tes and not test_slurm_' + ignore=' --ignore=tests/test_google_lifesciences.py' + ignore=' --ignore=tests/test_google_lifesciences.py --ignore-glob=tests/test_conda_python_3_7_script/*' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages:/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=4 + /usr/bin/pytest -v -k 'not test_lint[long_run-positive] and not test_tibanna and not test_tes and not test_slurm_' --ignore=tests/test_google_lifesciences.py '--ignore-glob=tests/test_conda_python_3_7_script/*' ============================= test session starts ============================== platform linux -- Python 3.12.1, pytest-7.4.3, pluggy-1.3.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/snakemake-7.32.4 plugins: requests-mock-1.10.0 collecting ... collected 66 items / 8 deselected / 58 selected tests/test_azure_batch_executor.py::test_az_batch_executor SKIPPED (...) [ 1%] tests/test_expand.py::test_simple_expand PASSED [ 3%] tests/test_expand.py::test_allow_missing PASSED [ 5%] tests/test_io.py::test_wildcard_regex PASSED [ 6%] tests/test_io.py::test_expand PASSED [ 8%] tests/test_kubernetes.py::test_kubernetes_plain SKIPPED (Skipping GC...) [ 10%] tests/test_kubernetes.py::test_kubernetes_conda SKIPPED (Skipping GC...) [ 12%] tests/test_kubernetes.py::test_kubernetes_singularity SKIPPED (Skipp...) [ 13%] tests/test_kubernetes.py::test_kubernetes_conda_singularity SKIPPED [ 15%] tests/test_kubernetes.py::test_issue1041 SKIPPED (Skipping GCLOUD te...) [ 17%] tests/test_linting.py::test_lint[version-positive] PASSED [ 18%] tests/test_linting.py::test_lint[version-negative] PASSED [ 20%] tests/test_linting.py::test_lint[tab_usage-positive] PASSED [ 22%] tests/test_linting.py::test_lint[tab_usage-negative] PASSED [ 24%] tests/test_linting.py::test_lint[singularity-positive] PASSED [ 25%] tests/test_linting.py::test_lint[singularity-negative] PASSED [ 27%] tests/test_linting.py::test_lint[path_add-positive] PASSED [ 29%] tests/test_linting.py::test_lint[path_add-negative] PASSED [ 31%] tests/test_linting.py::test_lint[params_prefix-positive] PASSED [ 32%] tests/test_linting.py::test_lint[params_prefix-negative] PASSED [ 34%] tests/test_linting.py::test_lint[not_used_params-positive] PASSED [ 36%] tests/test_linting.py::test_lint[not_used_params-negative] PASSED [ 37%] tests/test_linting.py::test_lint[mixed_func_and_rules-positive] PASSED [ 39%] tests/test_linting.py::test_lint[mixed_func_and_rules-negative] PASSED [ 41%] tests/test_linting.py::test_lint[missing_software_definition-positive] PASSED [ 43%] tests/test_linting.py::test_lint[missing_software_definition-negative] PASSED [ 44%] tests/test_linting.py::test_lint[long_run-negative] PASSED [ 46%] tests/test_linting.py::test_lint[log_directive-positive] PASSED [ 48%] tests/test_linting.py::test_lint[log_directive-negative] PASSED [ 50%] tests/test_linting.py::test_lint[iofile_by_index-positive] PASSED [ 51%] tests/test_linting.py::test_lint[iofile_by_index-negative] PASSED [ 53%] tests/test_linting.py::test_lint[envvars-positive] PASSED [ 55%] tests/test_linting.py::test_lint[envvars-negative] PASSED [ 56%] tests/test_linting.py::test_lint[dynamic-positive] PASSED [ 58%] tests/test_linting.py::test_lint[dynamic-negative] PASSED [ 60%] tests/test_linting.py::test_lint[absolute_paths-positive] PASSED [ 62%] tests/test_linting.py::test_lint[absolute_paths-negative] PASSED [ 63%] tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 65%] tests/test_schema.py::test_config PASSED [ 67%] tests/test_schema.py::test_config_ref PASSED [ 68%] tests/test_schema.py::test_dataframe PASSED [ 70%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_shebang_and_second_manifest PASSED [ 72%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_with_shebang PASSED [ 74%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_without_shebang PASSED [ 75%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_empty_line_without_shebang PASSED [ 77%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_is_case_insensitive PASSED [ 79%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spacing_has_no_impact PASSED [ 81%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_formatting_not_touched_even_if_wrong PASSED [ 82%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spelt_wrong PASSED [ 84%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_shebang PASSED [ 86%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_without_shebang PASSED [ 87%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_spacing_around_language PASSED [ 89%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_has_non_cargo_block PASSED [ 91%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_missing_closing_fence PASSED [ 93%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_not_in_first_comment_block PASSED [ 94%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_outer_line_doc_comment PASSED [ 96%] tests/test_script.py::TestBashEncoder::test_named_list_one_named_one_str PASSED [ 98%] tests/test_script.py::TestBashEncoder::test_named_list_named_is_list PASSED [100%] =============================== warnings summary =============================== tests/test_schema.py: 12 warnings /builddir/build/BUILD/snakemake-7.32.4/snakemake/utils.py:50: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. from jsonschema import validators, RefResolver tests/test_schema.py::test_config :488: DeprecationWarning: Type google.protobuf.pyext._message.ScalarMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/test_schema.py::test_config :488: DeprecationWarning: Type google.protobuf.pyext._message.MessageMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/test_schema.py::test_config /usr/lib/python3.12/site-packages/google/protobuf/internal/well_known_types.py:92: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). _EPOCH_DATETIME = datetime.utcfromtimestamp(0) tests/test_schema.py::test_dataframe /usr/lib/python3.12/site-packages/pandas/core/algorithms.py:522: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) common = np.find_common_type([values.dtype, comps_array.dtype], []) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ========== 52 passed, 6 skipped, 8 deselected, 16 warnings in 13.62s =========== + RPM_EC=0 ++ jobs -p + exit 0 Processing files: snakemake-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake) = 7.32.4 python3dist(snakemake) = 7.32.4 snakemake = 7.32.4-3.fc40 vim-snakemake = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (python3.12dist(jinja2) < 4~~ with python3.12dist(jinja2) >= 3) (python3.12dist(yte) < 2~~ with python3.12dist(yte) >= 1.5.1) /usr/bin/python3 python(abi) = 3.12 python3.12dist(appdirs) python3.12dist(configargparse) python3.12dist(connection-pool) >= 0.0.3 python3.12dist(datrie) python3.12dist(docutils) python3.12dist(gitpython) python3.12dist(humanfriendly) python3.12dist(jsonschema) python3.12dist(nbformat) python3.12dist(packaging) python3.12dist(psutil) python3.12dist(pulp) >= 2 python3.12dist(pyyaml) python3.12dist(requests) python3.12dist(reretry) python3.12dist(smart-open) >= 3 python3.12dist(stopit) python3.12dist(tabulate) python3.12dist(throttler) python3.12dist(toposort) >= 1.10 python3.12dist(wrapt) Processing files: snakemake-doc-7.32.4-3.fc40.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.dEjO8j + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + DOCDIR=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/doc/snakemake-doc + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/CODE_OF_CONDUCT.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/README.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/README-nano.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/README-vim.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/docs/_build/latex/Snakemake.pdf /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/doc/snakemake-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ysfLg1 + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + LICENSEDIR=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/licenses/snakemake-doc + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/licenses/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/LICENSE.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386/usr/share/licenses/snakemake-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: snakemake-doc = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: snakemake+reports-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake[reports]) = 7.32.4 python3dist(snakemake[reports]) = 7.32.4 snakemake+reports = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(pygments) Processing files: snakemake+messaging-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake[messaging]) = 7.32.4 python3dist(snakemake[messaging]) = 7.32.4 snakemake+messaging = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(slacker) Processing files: snakemake+google-cloud-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake[google-cloud]) = 7.32.4 python3dist(snakemake[google-cloud]) = 7.32.4 snakemake+google-cloud = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(google-api-python-client) python3.12dist(google-cloud-storage) python3.12dist(google-crc32c) python3.12dist(oauth2client) Processing files: snakemake+azure-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake[azure]) = 7.32.4 python3dist(snakemake[azure]) = 7.32.4 snakemake+azure = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(azure-batch) python3.12dist(azure-core) python3.12dist(azure-identity) python3.12dist(azure-mgmt-batch) python3.12dist(azure-storage-blob) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.src.rpm Wrote: /builddir/build/RPMS/snakemake+google-cloud-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+messaging-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+reports-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+azure-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake-doc-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake-7.32.4-3.fc40.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.C3m7CX + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + /usr/bin/rm -rf /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.i386 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.HxAhIM + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS + rm -rf snakemake-7.32.4 snakemake-7.32.4.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild snakemake-7.32.4-3.fc40.src.rpm Finish: build phase for snakemake-7.32.4-3.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-i686-1704460536.002727/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-i686-1704460536.002727/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-i686-1704460536.002727/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/snakemake-7.32.4-3.fc40.src.rpm) Config(child) 1 minutes 26 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "snakemake", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake+google-cloud", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake+messaging", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake+azure", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake+reports", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake-doc", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "src" } ] } RPMResults finished