Warning: Permanently added '54.174.115.52' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7580310-fedora-39-i386 --chroot fedora-39-i386 Version: 0.73 PID: 6613 Logging PID: 6614 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7580310, 'buildroot_pkgs': [], 'chroot': 'fedora-39-i386', 'enable_net': False, 'fedora_review': False, 'git_hash': '4fe0a5afb63c3e2264db231b82b266051ea20d02', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.8.3/snakemake', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'snakemake', 'package_version': '8.13.0-3', 'project_dirname': 'scipy-1.8.3', 'project_name': 'scipy-1.8.3', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/scipy-1.8.3/fedora-39-i386/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/scipy-1.8.3--https://src.fedoraproject.org/user/churchyard', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/churchyard', 'tags': [], 'task_id': '7580310-fedora-39-i386', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.8.3/snakemake /var/lib/copr-rpmbuild/workspace/workdir-ktrm5jcn/snakemake --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.8.3/snakemake', '/var/lib/copr-rpmbuild/workspace/workdir-ktrm5jcn/snakemake', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-ktrm5jcn/snakemake'... Running: git checkout 4fe0a5afb63c3e2264db231b82b266051ea20d02 -- cmd: ['git', 'checkout', '4fe0a5afb63c3e2264db231b82b266051ea20d02', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ktrm5jcn/snakemake rc: 0 stdout: stderr: Note: switching to '4fe0a5afb63c3e2264db231b82b266051ea20d02'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 4fe0a5a automatic import of snakemake Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ktrm5jcn/snakemake rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading snakemake-8.13.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o snakemake-8.13.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/scipy-1.8.3/snakemake/snakemake-8.13.0.tar.gz/md5/49f5afaa5910cb343a7bfcd0b126ec33/snakemake-8.13.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 8456k 100 8456k 0 0 208M 0 --:--:-- --:--:-- --:--:-- 211M INFO: Reading stdout from command: md5sum snakemake-8.13.0.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ktrm5jcn/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ktrm5jcn/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1717967562.714309 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ktrm5jcn/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ktrm5jcn/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1717967562.714309 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-ktrm5jcn/snakemake/snakemake.spec) Config(fedora-39-i686) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-i686-bootstrap-1717967562.714309/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:39 INFO: Pulling image: registry.fedoraproject.org/fedora:39 INFO: Copy content of container registry.fedoraproject.org/fedora:39 to /var/lib/mock/fedora-39-i686-bootstrap-1717967562.714309/root INFO: Checking that registry.fedoraproject.org/fedora:39 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:39 with podman image mount INFO: image registry.fedoraproject.org/fedora:39 as /var/lib/containers/storage/overlay/3ae8ad547bc1128a83cb0ebe6b2ec80529acd1a4acc32a3e0f79e075f3370892/merged INFO: umounting image registry.fedoraproject.org/fedora:39 (/var/lib/containers/storage/overlay/3ae8ad547bc1128a83cb0ebe6b2ec80529acd1a4acc32a3e0f79e075f3370892/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 45 MB/s | 1.9 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 162 MB/s | 75 MB 00:00 local 131 MB/s | 74 MB 00:00 Package python3-dnf-4.19.2-1.fc39.noarch is already installed. Dependencies resolved. ========================================================================================================================= Package Arch Version Repository Size ========================================================================================================================= Installing: dnf5 x86_64 5.2.3.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 695 k replacing dnf.noarch 4.19.2-1.fc39 replacing yum.noarch 4.19.2-1.fc39 python3-dnf-plugins-core noarch 4.7.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 302 k Upgrading: dnf-data noarch 4.20.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k libstdc++ x86_64 14.1.1-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 883 k python3-dnf noarch 4.20.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 580 k Installing dependencies: dbus-libs x86_64 1:1.14.10-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 156 k fmt x86_64 10.2.1-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125 k libdnf5 x86_64 5.2.3.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M libdnf5-cli x86_64 5.2.3.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 306 k python3-dateutil noarch 1:2.8.2-13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 345 k python3-dbus x86_64 1.3.2-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145 k python3-distro noarch 1.9.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 45 k python3-six noarch 1.16.0-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python3-systemd x86_64 235-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100 k sdbus-cpp x86_64 1.5.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113 k Transaction Summary ========================================================================================================================= Install 12 Packages Upgrade 3 Packages Total download size: 4.8 M Downloading Packages: (1/15): dbus-libs-1.14.10-3.fc40.x86_64.rpm 2.4 MB/s | 156 kB 00:00 (2/15): fmt-10.2.1-4.fc41.x86_64.rpm 1.7 MB/s | 125 kB 00:00 (3/15): libdnf5-5.2.3.0-1.fc41.x86_64.rpm 30 MB/s | 1.1 MB 00:00 (4/15): libdnf5-cli-5.2.3.0-1.fc41.x86_64.rpm 11 MB/s | 306 kB 00:00 (5/15): python3-dateutil-2.8.2-13.fc40.noarch.r 19 MB/s | 345 kB 00:00 (6/15): python3-dbus-1.3.2-6.fc40.x86_64.rpm 7.1 MB/s | 145 kB 00:00 (7/15): python3-distro-1.9.0-3.fc40.noarch.rpm 3.2 MB/s | 45 kB 00:00 (8/15): python3-dnf-plugins-core-4.7.0-1.fc41.n 15 MB/s | 302 kB 00:00 (9/15): python3-six-1.16.0-14.fc40.noarch.rpm 2.9 MB/s | 41 kB 00:00 (10/15): dnf5-5.2.3.0-1.fc41.x86_64.rpm 4.5 MB/s | 695 kB 00:00 (11/15): python3-systemd-235-9.fc40.x86_64.rpm 6.9 MB/s | 100 kB 00:00 (12/15): dnf-data-4.20.0-1.fc41.noarch.rpm 2.8 MB/s | 39 kB 00:00 (13/15): sdbus-cpp-1.5.0-2.fc41.x86_64.rpm 5.3 MB/s | 113 kB 00:00 (14/15): python3-dnf-4.20.0-1.fc41.noarch.rpm 30 MB/s | 580 kB 00:00 (15/15): libstdc++-14.1.1-5.fc41.x86_64.rpm 28 MB/s | 883 kB 00:00 -------------------------------------------------------------------------------- Total 26 MB/s | 4.8 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Upgrading : libstdc++-14.1.1-5.fc41.x86_64 1/20 Installing : fmt-10.2.1-4.fc41.x86_64 2/20 Installing : libdnf5-5.2.3.0-1.fc41.x86_64 3/20 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : libdnf5-cli-5.2.3.0-1.fc41.x86_64 4/20 Upgrading : dnf-data-4.20.0-1.fc41.noarch 5/20 Upgrading : python3-dnf-4.20.0-1.fc41.noarch 6/20 Installing : sdbus-cpp-1.5.0-2.fc41.x86_64 7/20 Installing : python3-systemd-235-9.fc40.x86_64 8/20 Installing : python3-six-1.16.0-14.fc40.noarch 9/20 Installing : python3-dateutil-1:2.8.2-13.fc40.noarch 10/20 Installing : python3-distro-1.9.0-3.fc40.noarch 11/20 Installing : dbus-libs-1:1.14.10-3.fc40.x86_64 12/20 Installing : python3-dbus-1.3.2-6.fc40.x86_64 13/20 Installing : python3-dnf-plugins-core-4.7.0-1.fc41.noarch 14/20 Installing : dnf5-5.2.3.0-1.fc41.x86_64 15/20 Obsoleting : yum-4.19.2-1.fc39.noarch 16/20 Running scriptlet: dnf-4.19.2-1.fc39.noarch 17/20 Obsoleting : dnf-4.19.2-1.fc39.noarch 17/20 warning: directory /var/cache/dnf: remove failed: Device or resource busy Running scriptlet: dnf-4.19.2-1.fc39.noarch 17/20 Cleanup : python3-dnf-4.19.2-1.fc39.noarch 18/20 Cleanup : dnf-data-4.19.2-1.fc39.noarch 19/20 Cleanup : libstdc++-13.3.1-1.fc39.x86_64 20/20 Running scriptlet: libstdc++-13.3.1-1.fc39.x86_64 20/20 Verifying : dbus-libs-1:1.14.10-3.fc40.x86_64 1/20 Verifying : dnf5-5.2.3.0-1.fc41.x86_64 2/20 Verifying : dnf-4.19.2-1.fc39.noarch 3/20 Verifying : yum-4.19.2-1.fc39.noarch 4/20 Verifying : fmt-10.2.1-4.fc41.x86_64 5/20 Verifying : libdnf5-5.2.3.0-1.fc41.x86_64 6/20 Verifying : libdnf5-cli-5.2.3.0-1.fc41.x86_64 7/20 Verifying : python3-dateutil-1:2.8.2-13.fc40.noarch 8/20 Verifying : python3-dbus-1.3.2-6.fc40.x86_64 9/20 Verifying : python3-distro-1.9.0-3.fc40.noarch 10/20 Verifying : python3-dnf-plugins-core-4.7.0-1.fc41.noarch 11/20 Verifying : python3-six-1.16.0-14.fc40.noarch 12/20 Verifying : python3-systemd-235-9.fc40.x86_64 13/20 Verifying : sdbus-cpp-1.5.0-2.fc41.x86_64 14/20 Verifying : dnf-data-4.20.0-1.fc41.noarch 15/20 Verifying : dnf-data-4.19.2-1.fc39.noarch 16/20 Verifying : libstdc++-14.1.1-5.fc41.x86_64 17/20 Verifying : libstdc++-13.3.1-1.fc39.x86_64 18/20 Verifying : python3-dnf-4.20.0-1.fc41.noarch 19/20 Verifying : python3-dnf-4.19.2-1.fc39.noarch 20/20 Upgraded: dnf-data-4.20.0-1.fc41.noarch libstdc++-14.1.1-5.fc41.x86_64 python3-dnf-4.20.0-1.fc41.noarch Installed: dbus-libs-1:1.14.10-3.fc40.x86_64 dnf5-5.2.3.0-1.fc41.x86_64 fmt-10.2.1-4.fc41.x86_64 libdnf5-5.2.3.0-1.fc41.x86_64 libdnf5-cli-5.2.3.0-1.fc41.x86_64 python3-dateutil-1:2.8.2-13.fc40.noarch python3-dbus-1.3.2-6.fc40.x86_64 python3-distro-1.9.0-3.fc40.noarch python3-dnf-plugins-core-4.7.0-1.fc41.noarch python3-six-1.16.0-14.fc40.noarch python3-systemd-235-9.fc40.x86_64 sdbus-cpp-1.5.0-2.fc41.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-i686-1717967562.714309/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-3.fc39.x86_64 python3-dnf-4.20.0-1.fc41.noarch python3-dnf-plugins-core-4.7.0-1.fc41.noarch dnf5-5.2.3.0-1.fc41.x86_64 Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 44 MB/s | 1.9 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 152 MB/s | 60 MB 00:00 local 156 MB/s | 61 MB 00:00 Dependencies resolved. ============================================================================================================================================ Package Arch Version Repository Size ============================================================================================================================================ Installing group/module packages: bash i686 5.2.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M bzip2 i686 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53 k coreutils i686 9.5-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M cpio i686 2.15-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 290 k diffutils i686 3.10-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 403 k fedora-release noarch 41-0.13 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 k findutils i686 1:4.10.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 551 k gawk i686 5.3.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 M glibc-minimal-langpack i686 2.39.9000-18.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112 k grep i686 3.11-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 295 k gzip i686 1.13-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 163 k info i686 7.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 186 k patch i686 2.7.6-24.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 142 k redhat-rpm-config noarch 292-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 75 k rpm-build i686 4.19.91-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 76 k sed i686 4.9-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 311 k shadow-utils i686 2:4.15.1-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 M tar i686 2:1.35-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 869 k unzip i686 6.0-63.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 180 k util-linux i686 2.40.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M which i686 2.21-41.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k xz i686 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 536 k Installing dependencies: add-determinism-nopython i686 0.2.0-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 880 k alternatives i686 1.27-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k ansible-srpm-macros noarch 1-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k audit-libs i686 4.0.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 129 k authselect i686 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 142 k authselect-libs i686 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 207 k basesystem noarch 11-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 k binutils i686 2.42.50-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.9 M build-reproducibility-srpm-macros noarch 0.2.0-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.1 k bzip2-libs i686 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k ca-certificates noarch 2023.2.62_v7.0.401-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 862 k coreutils-common i686 9.5-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M cracklib i686 2.9.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 82 k crypto-policies noarch 20240521-1.gitf71d135.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 65 k curl i686 8.8.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 308 k cyrus-sasl-lib i686 2.1.28-22.fc41 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-9.fc41.i686 1/1 Preparing : 1/1 Installing : crypto-policies-20240521-1.gitf71d135.fc41.noarc 1/154 Running scriptlet: crypto-policies-20240521-1.gitf71d135.fc41.noarc 1/154 Installing : fedora-release-identity-basic-41-0.13.noarch 2/154 Installing : fedora-repos-rawhide-41-0.2.noarch 3/154 Installing : fedora-gpg-keys-41-0.2.noarch 4/154 Installing : fedora-repos-41-0.2.noarch 5/154 Installing : fedora-release-common-41-0.13.noarch 6/154 Installing : fedora-release-41-0.13.noarch 7/154 Installing : setup-2.15.0-4.fc41.noarch 8/154 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.15.0-4.fc41.noarch 8/154 Installing : filesystem-3.18-9.fc41.i686 9/154 Installing : basesystem-11-20.fc40.noarch 10/154 Installing : rust-srpm-macros-26.3-1.fc41.noarch 11/154 Installing : qt6-srpm-macros-6.7.1-1.fc41.noarch 12/154 Installing : qt5-srpm-macros-5.15.14-1.fc41.noarch 13/154 Installing : 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libpkgconf-2.1.1-1.fc41.i686 120/154 Installing : pkgconf-2.1.1-1.fc41.i686 121/154 Installing : pkgconf-pkg-config-2.1.1-1.fc41.i686 122/154 Installing : libtool-ltdl-2.4.7-11.fc41.i686 123/154 Installing : openldap-2.6.8-1.fc41.i686 124/154 Installing : libverto-0.3.2-8.fc40.i686 125/154 Installing : krb5-libs-1.21.2-5.fc40.i686 126/154 Installing : libtirpc-1.3.4-1.rc3.fc41.i686 127/154 Installing : libnsl2-2.0.1-1.fc40.i686 128/154 Installing : pam-1.6.1-3.fc41.i686 129/154 Installing : libssh-0.10.6-6.fc41.i686 130/154 Installing : libcurl-8.8.0-1.fc41.i686 131/154 Installing : elfutils-libs-0.191-7.fc41.i686 132/154 Installing : elfutils-debuginfod-client-0.191-7.fc41.i686 133/154 Installing : binutils-2.42.50-14.fc41.i686 134/154 Running scriptlet: binutils-2.42.50-14.fc41.i686 134/154 Installing : elfutils-0.191-7.fc41.i686 135/154 Installing : rpm-build-libs-4.19.91-8.fc41.i686 136/154 Installing : curl-8.8.0-1.fc41.i686 137/154 Running scriptlet: rpm-4.19.91-8.fc41.i686 138/154 Installing : rpm-4.19.91-8.fc41.i686 138/154 Installing : efi-srpm-macros-5-11.fc40.noarch 139/154 Installing : lua-srpm-macros-1-13.fc40.noarch 140/154 Installing : zig-srpm-macros-1-2.fc40.noarch 141/154 Installing : xxhash-libs-0.8.2-2.fc40.i686 142/154 Installing : gdb-minimal-14.2-9.fc41.i686 143/154 Installing : debugedit-5.0-16.fc41.i686 144/154 Installing : fonts-srpm-macros-1:2.0.5-15.fc41.noarch 145/154 Installing : forge-srpm-macros-0.3.1-1.fc41.noarch 146/154 Installing : go-srpm-macros-3.6.0-1.fc41.noarch 147/154 Installing : python-srpm-macros-3.12-9.fc41.noarch 148/154 Installing : pyproject-srpm-macros-1.12.1-1.fc41.noarch 149/154 Installing : redhat-rpm-config-292-1.fc41.noarch 150/154 Installing : rpm-build-4.19.91-8.fc41.i686 151/154 Installing : util-linux-2.40.1-1.fc41.i686 152/154 Running scriptlet: util-linux-2.40.1-1.fc41.i686 152/154 Installing : which-2.21-41.fc40.i686 153/154 Installing : info-7.1-2.fc40.i686 154/154 Running scriptlet: filesystem-3.18-9.fc41.i686 154/154 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch 154/154 Running scriptlet: authselect-libs-1.5.0-5.fc41.i686 154/154 Running scriptlet: rpm-4.19.91-8.fc41.i686 154/154 Running scriptlet: info-7.1-2.fc40.i686 154/154 Installed: add-determinism-nopython-0.2.0-9.fc41.i686 alternatives-1.27-1.fc41.i686 ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-2.fc41.i686 authselect-1.5.0-5.fc41.i686 authselect-libs-1.5.0-5.fc41.i686 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.i686 binutils-2.42.50-14.fc41.i686 build-reproducibility-srpm-macros-0.2.0-9.fc41.noarch bzip2-1.0.8-18.fc40.i686 bzip2-libs-1.0.8-18.fc40.i686 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-2.fc41.i686 coreutils-common-9.5-2.fc41.i686 cpio-2.15-1.fc40.i686 cracklib-2.9.11-5.fc40.i686 crypto-policies-20240521-1.gitf71d135.fc41.noarch curl-8.8.0-1.fc41.i686 cyrus-sasl-lib-2.1.28-22.fc41.i686 debugedit-5.0-16.fc41.i686 diffutils-3.10-5.fc40.i686 dwz-0.15-6.fc40.i686 ed-1.20.2-1.fc41.i686 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.i686 elfutils-debuginfod-client-0.191-7.fc41.i686 elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.i686 elfutils-libs-0.191-7.fc41.i686 fedora-gpg-keys-41-0.2.noarch fedora-release-41-0.13.noarch fedora-release-common-41-0.13.noarch fedora-release-identity-basic-41-0.13.noarch fedora-repos-41-0.2.noarch fedora-repos-rawhide-41-0.2.noarch file-5.45-5.fc41.i686 file-libs-5.45-5.fc41.i686 filesystem-3.18-9.fc41.i686 findutils-1:4.10.0-2.fc41.i686 fonts-srpm-macros-1:2.0.5-15.fc41.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.i686 gdb-minimal-14.2-9.fc41.i686 gdbm-1:1.23-6.fc40.i686 gdbm-libs-1:1.23-6.fc40.i686 ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-18.fc41.i686 glibc-common-2.39.9000-18.fc41.i686 glibc-gconv-extra-2.39.9000-18.fc41.i686 glibc-minimal-langpack-2.39.9000-18.fc41.i686 gmp-1:6.3.0-1.fc41.i686 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-8.fc41.i686 gzip-1.13-1.fc40.i686 info-7.1-2.fc40.i686 jansson-2.13.1-9.fc40.i686 kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.i686 krb5-libs-1.21.2-5.fc40.i686 libacl-2.3.2-1.fc40.i686 libarchive-3.7.4-1.fc41.i686 libattr-2.5.2-3.fc40.i686 libblkid-2.40.1-1.fc41.i686 libbrotli-1.1.0-3.fc40.i686 libcap-2.70-1.fc41.i686 libcap-ng-0.8.5-1.fc41.i686 libcom_err-1.47.0-5.fc40.i686 libcurl-8.8.0-1.fc41.i686 libeconf-0.6.2-2.fc41.i686 libevent-2.1.12-13.fc41.i686 libfdisk-2.40.1-1.fc41.i686 libffi-3.4.6-1.fc41.i686 libgcc-14.1.1-5.fc41.i686 libgomp-14.1.1-5.fc41.i686 libidn2-2.3.7-1.fc40.i686 libmount-2.40.1-1.fc41.i686 libnghttp2-1.62.0-1.fc41.i686 libnsl2-2.0.1-1.fc40.i686 libpkgconf-2.1.1-1.fc41.i686 libpsl-0.21.5-3.fc40.i686 libpwquality-1.4.5-9.fc40.i686 libselinux-3.6-4.fc40.i686 libsemanage-3.6-3.fc40.i686 libsepol-3.6-3.fc40.i686 libsmartcols-2.40.1-1.fc41.i686 libssh-0.10.6-6.fc41.i686 libssh-config-0.10.6-6.fc41.noarch libstdc++-14.1.1-5.fc41.i686 libtasn1-4.19.0-6.fc40.i686 libtirpc-1.3.4-1.rc3.fc41.i686 libtool-ltdl-2.4.7-11.fc41.i686 libunistring-1.1-7.fc41.i686 libutempter-1.2.1-13.fc40.i686 libuuid-2.40.1-1.fc41.i686 libverto-0.3.2-8.fc40.i686 libxcrypt-4.4.36-5.fc40.i686 libxml2-2.12.7-1.fc41.i686 libzstd-1.5.6-1.fc41.i686 lua-libs-5.4.6-5.fc40.i686 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.i686 mpfr-4.2.1-4.fc41.i686 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.i686 ocaml-srpm-macros-10-2.fc41.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.8-1.fc41.i686 openssl-libs-1:3.2.2-1.fc41.i686 p11-kit-0.25.3-4.fc40.i686 p11-kit-trust-0.25.3-4.fc40.i686 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-3.fc41.i686 pam-libs-1.6.1-3.fc41.i686 patch-2.7.6-24.fc40.i686 pcre2-10.43-2.fc41.1.i686 pcre2-syntax-10.43-2.fc41.1.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.1-1.fc41.i686 pkgconf-m4-2.1.1-1.fc41.noarch pkgconf-pkg-config-2.1.1-1.fc41.i686 popt-1.19-6.fc40.i686 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.1-1.fc41.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.14-1.fc41.noarch qt6-srpm-macros-6.7.1-1.fc41.noarch readline-8.2-8.fc40.i686 redhat-rpm-config-292-1.fc41.noarch rpm-4.19.91-8.fc41.i686 rpm-build-4.19.91-8.fc41.i686 rpm-build-libs-4.19.91-8.fc41.i686 rpm-libs-4.19.91-8.fc41.i686 rpm-sequoia-1.6.0-3.fc41.i686 rust-srpm-macros-26.3-1.fc41.noarch sed-4.9-1.fc40.i686 setup-2.15.0-4.fc41.noarch shadow-utils-2:4.15.1-5.fc41.i686 sqlite-libs-3.46.0-1.fc41.i686 systemd-libs-256~rc4-2.fc41.i686 tar-2:1.35-3.fc40.i686 unzip-6.0-63.fc40.i686 util-linux-2.40.1-1.fc41.i686 util-linux-core-2.40.1-1.fc41.i686 which-2.21-41.fc40.i686 xxhash-libs-0.8.2-2.fc40.i686 xz-1:5.4.6-3.fc41.i686 xz-libs-1:5.4.6-3.fc41.i686 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.i686 zlib-ng-compat-2.1.6-6.fc41.i686 zstd-1.5.6-1.fc41.i686 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-nopython-0.2.0-9.fc41.i686 alternatives-1.27-1.fc41.i686 ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-2.fc41.i686 authselect-1.5.0-5.fc41.i686 authselect-libs-1.5.0-5.fc41.i686 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.i686 binutils-2.42.50-14.fc41.i686 build-reproducibility-srpm-macros-0.2.0-9.fc41.noarch bzip2-1.0.8-18.fc40.i686 bzip2-libs-1.0.8-18.fc40.i686 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-2.fc41.i686 coreutils-common-9.5-2.fc41.i686 cpio-2.15-1.fc40.i686 cracklib-2.9.11-5.fc40.i686 crypto-policies-20240521-1.gitf71d135.fc41.noarch curl-8.8.0-1.fc41.i686 cyrus-sasl-lib-2.1.28-22.fc41.i686 debugedit-5.0-16.fc41.i686 diffutils-3.10-5.fc40.i686 dwz-0.15-6.fc40.i686 ed-1.20.2-1.fc41.i686 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.i686 elfutils-debuginfod-client-0.191-7.fc41.i686 elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.i686 elfutils-libs-0.191-7.fc41.i686 fedora-gpg-keys-41-0.2.noarch fedora-release-41-0.13.noarch fedora-release-common-41-0.13.noarch fedora-release-identity-basic-41-0.13.noarch fedora-repos-41-0.2.noarch fedora-repos-rawhide-41-0.2.noarch file-5.45-5.fc41.i686 file-libs-5.45-5.fc41.i686 filesystem-3.18-9.fc41.i686 findutils-4.10.0-2.fc41.i686 fonts-srpm-macros-2.0.5-15.fc41.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.i686 gdb-minimal-14.2-9.fc41.i686 gdbm-1.23-6.fc40.i686 gdbm-libs-1.23-6.fc40.i686 ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-18.fc41.i686 glibc-common-2.39.9000-18.fc41.i686 glibc-gconv-extra-2.39.9000-18.fc41.i686 glibc-minimal-langpack-2.39.9000-18.fc41.i686 gmp-6.3.0-1.fc41.i686 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-8.fc41.i686 gzip-1.13-1.fc40.i686 info-7.1-2.fc40.i686 jansson-2.13.1-9.fc40.i686 kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.i686 krb5-libs-1.21.2-5.fc40.i686 libacl-2.3.2-1.fc40.i686 libarchive-3.7.4-1.fc41.i686 libattr-2.5.2-3.fc40.i686 libblkid-2.40.1-1.fc41.i686 libbrotli-1.1.0-3.fc40.i686 libcap-2.70-1.fc41.i686 libcap-ng-0.8.5-1.fc41.i686 libcom_err-1.47.0-5.fc40.i686 libcurl-8.8.0-1.fc41.i686 libeconf-0.6.2-2.fc41.i686 libevent-2.1.12-13.fc41.i686 libfdisk-2.40.1-1.fc41.i686 libffi-3.4.6-1.fc41.i686 libgcc-14.1.1-5.fc41.i686 libgomp-14.1.1-5.fc41.i686 libidn2-2.3.7-1.fc40.i686 libmount-2.40.1-1.fc41.i686 libnghttp2-1.62.0-1.fc41.i686 libnsl2-2.0.1-1.fc40.i686 libpkgconf-2.1.1-1.fc41.i686 libpsl-0.21.5-3.fc40.i686 libpwquality-1.4.5-9.fc40.i686 libselinux-3.6-4.fc40.i686 libsemanage-3.6-3.fc40.i686 libsepol-3.6-3.fc40.i686 libsmartcols-2.40.1-1.fc41.i686 libssh-0.10.6-6.fc41.i686 libssh-config-0.10.6-6.fc41.noarch libstdc++-14.1.1-5.fc41.i686 libtasn1-4.19.0-6.fc40.i686 libtirpc-1.3.4-1.rc3.fc41.i686 libtool-ltdl-2.4.7-11.fc41.i686 libunistring-1.1-7.fc41.i686 libutempter-1.2.1-13.fc40.i686 libuuid-2.40.1-1.fc41.i686 libverto-0.3.2-8.fc40.i686 libxcrypt-4.4.36-5.fc40.i686 libxml2-2.12.7-1.fc41.i686 libzstd-1.5.6-1.fc41.i686 lua-libs-5.4.6-5.fc40.i686 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.i686 mpfr-4.2.1-4.fc41.i686 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.i686 ocaml-srpm-macros-10-2.fc41.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.8-1.fc41.i686 openssl-libs-3.2.2-1.fc41.i686 p11-kit-0.25.3-4.fc40.i686 p11-kit-trust-0.25.3-4.fc40.i686 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-3.fc41.i686 pam-libs-1.6.1-3.fc41.i686 patch-2.7.6-24.fc40.i686 pcre2-10.43-2.fc41.1.i686 pcre2-syntax-10.43-2.fc41.1.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.1-1.fc41.i686 pkgconf-m4-2.1.1-1.fc41.noarch pkgconf-pkg-config-2.1.1-1.fc41.i686 popt-1.19-6.fc40.i686 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.1-1.fc41.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.14-1.fc41.noarch qt6-srpm-macros-6.7.1-1.fc41.noarch readline-8.2-8.fc40.i686 redhat-rpm-config-292-1.fc41.noarch rpm-4.19.91-8.fc41.i686 rpm-build-4.19.91-8.fc41.i686 rpm-build-libs-4.19.91-8.fc41.i686 rpm-libs-4.19.91-8.fc41.i686 rpm-sequoia-1.6.0-3.fc41.i686 rust-srpm-macros-26.3-1.fc41.noarch sed-4.9-1.fc40.i686 setup-2.15.0-4.fc41.noarch shadow-utils-4.15.1-5.fc41.i686 sqlite-libs-3.46.0-1.fc41.i686 systemd-libs-256~rc4-2.fc41.i686 tar-1.35-3.fc40.i686 unzip-6.0-63.fc40.i686 util-linux-2.40.1-1.fc41.i686 util-linux-core-2.40.1-1.fc41.i686 which-2.21-41.fc40.i686 xxhash-libs-0.8.2-2.fc40.i686 xz-5.4.6-3.fc41.i686 xz-libs-5.4.6-3.fc41.i686 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.i686 zlib-ng-compat-2.1.6-6.fc41.i686 zstd-1.5.6-1.fc41.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1717891200 Wrote: /builddir/build/SRPMS/snakemake-8.13.0-3.fc41.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-39-i686-1717967562.714309/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-i686-1717967562.714309/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-i686-1717967562.714309/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-i686-1717967562.714309/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-ktrm5jcn/snakemake/snakemake.spec) Config(child) 1 minutes 21 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/snakemake-8.13.0-3.fc41.src.rpm) Config(fedora-39-i686) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-i686-bootstrap-1717967562.714309/root. INFO: reusing tmpfs at /var/lib/mock/fedora-39-i686-bootstrap-1717967562.714309/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-i686-1717967562.714309/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-3.fc39.x86_64 python3-dnf-4.20.0-1.fc41.noarch python3-dnf-plugins-core-4.7.0-1.fc41.noarch dnf5-5.2.3.0-1.fc41.x86_64 Finish: chroot init Start: build phase for snakemake-8.13.0-3.fc41.src.rpm Start: build setup for snakemake-8.13.0-3.fc41.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1717891200 Wrote: /builddir/build/SRPMS/snakemake-8.13.0-3.fc41.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 97 kB/s | 1.5 kB 00:00 Copr repository 30 MB/s | 1.9 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 89 kB/s | 3.8 kB 00:00 local 83 kB/s | 3.8 kB 00:00 Dependencies resolved. ======================================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================================== Installing: help2man noarch 1.49.3-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 217 k python3-boto3 noarch 1.34.121-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 355 k python3-devel i686 3.12.3-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 275 k python3-flask noarch 1:3.0.3-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 194 k python3-google-cloud-storage noarch 2.14.0-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 189 k python3-pandas i686 1.5.3-7.fc39~bootstrap copr_base 7.1 M python3-pytest noarch 7.4.3-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M python3-snakemake-executor-plugin-cluster-generic noarch 1.0.9-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 24 k python3-snakemake-storage-plugin-s3 noarch 0.2.11-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 23 k vim-filesystem noarch 2:9.1.452-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17 k Installing dependencies: abseil-cpp i686 20240116.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 735 k add-determinism i686 0.2.0-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 894 k c-ares i686 1.28.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 167 k expat i686 2.6.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 118 k flexiblas i686 3.4.4-1.fc41 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======================================================================================================================================================== Install 136 Packages Total download size: 63 M Installed size: 339 M Downloading Packages: (1/136): python3-pandas-1.5.3-7.fc39~bootstrap. 60 MB/s | 7.1 MB 00:00 (2/136): abseil-cpp-20240116.2-2.fc41.i686.rpm 4.9 MB/s | 735 kB 00:00 (3/136): add-determinism-0.2.0-9.fc41.i686.rpm 5.9 MB/s | 894 kB 00:00 (4/136): expat-2.6.2-1.fc41.i686.rpm 4.5 MB/s | 118 kB 00:00 (5/136): flexiblas-3.4.4-1.fc41.i686.rpm 982 kB/s | 25 kB 00:00 (6/136): flexiblas-openblas-openmp-3.4.4-1.fc41 725 kB/s | 17 kB 00:00 (7/136): flexiblas-netlib-3.4.4-1.fc41.i686.rpm 59 MB/s | 3.1 MB 00:00 (8/136): google-crc32c-1.1.2-9.fc40.i686.rpm 757 kB/s | 20 kB 00:00 (9/136): c-ares-1.28.1-1.fc41.i686.rpm 1.5 MB/s | 167 kB 00:00 (10/136): grpc-data-1.48.4-35.fc41.noarch.rpm 896 kB/s | 23 kB 00:00 (11/136): groff-base-1.23.0-6.fc40.i686.rpm 36 MB/s | 1.1 MB 00:00 (12/136): help2man-1.49.3-5.fc40.noarch.rpm 5.8 MB/s | 217 kB 00:00 (13/136): libb2-0.98.1-11.fc40.i686.rpm 1.2 MB/s | 29 kB 00:00 (14/136): libquadmath-14.1.1-5.fc41.i686.rpm 9.7 MB/s | 247 kB 00:00 (15/136): libgfortran-14.1.1-5.fc41.i686.rpm 23 MB/s | 849 kB 00:00 (16/136): mpdecimal-2.5.1-9.fc40.i686.rpm 2.5 MB/s | 92 kB 00:00 (17/136): ncurses-6.4-12.20240127.fc40.i686.rpm 16 MB/s | 418 kB 00:00 (18/136): openblas-0.3.26-4.fc40.i686.rpm 1.5 MB/s | 39 kB 00:00 (19/136): perl-AutoLoader-5.74-507.fc41.noarch. 868 kB/s | 21 kB 00:00 (20/136): openblas-openmp-0.3.26-4.fc40.i686.rp 91 MB/s | 4.0 MB 00:00 (21/136): perl-B-1.88-507.fc41.i686.rpm 4.5 MB/s | 181 kB 00:00 (22/136): perl-Carp-1.54-502.fc40.noarch.rpm 1.0 MB/s | 29 kB 00:00 (23/136): perl-Class-Struct-0.68-507.fc41.noarc 897 kB/s | 22 kB 00:00 (24/136): perl-Data-Dumper-2.189-504.fc41.i686. 2.3 MB/s | 58 kB 00:00 (25/136): perl-Digest-1.20-502.fc40.noarch.rpm 1.0 MB/s | 25 kB 00:00 (26/136): perl-Digest-MD5-2.59-3.fc40.i686.rpm 1.4 MB/s | 36 kB 00:00 (27/136): perl-DynaLoader-1.54-507.fc41.i686.rp 1.0 MB/s | 26 kB 00:00 (28/136): perl-Encode-3.21-505.fc41.i686.rpm 38 MB/s | 1.0 MB 00:00 (29/136): perl-Exporter-5.78-3.fc40.noarch.rpm 1.2 MB/s | 31 kB 00:00 (30/136): perl-Errno-1.37-507.fc41.i686.rpm 594 kB/s | 15 kB 00:00 (31/136): perl-Fcntl-1.15-507.fc41.i686.rpm 861 kB/s | 21 kB 00:00 (32/136): perl-File-Basename-2.86-507.fc41.noar 705 kB/s | 17 kB 00:00 (33/136): perl-File-Path-2.18-503.fc40.noarch.r 1.4 MB/s | 35 kB 00:00 (34/136): perl-File-Temp-0.231.100-503.fc40.noa 2.4 MB/s | 59 kB 00:00 (35/136): perl-File-stat-1.13-507.fc41.noarch.r 701 kB/s | 17 kB 00:00 (36/136): perl-FileHandle-2.05-507.fc41.noarch. 636 kB/s | 16 kB 00:00 (37/136): perl-Getopt-Long-2.57-4.fc41.noarch.r 2.5 MB/s | 63 kB 00:00 (38/136): perl-Getopt-Std-1.13-507.fc41.noarch. 653 kB/s | 16 kB 00:00 (39/136): perl-HTTP-Tiny-0.088-5.fc40.noarch.rp 2.2 MB/s | 56 kB 00:00 (40/136): perl-IO-1.52-507.fc41.i686.rpm 3.1 MB/s | 79 kB 00:00 (41/136): 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perl-locale-1.10-507.fc41.noarch.rpm 577 kB/s | 14 kB 00:00 (70/136): perl-libs-5.38.2-507.fc41.i686.rpm 62 MB/s | 2.4 MB 00:00 (71/136): perl-mro-1.28-507.fc41.i686.rpm 1.2 MB/s | 30 kB 00:00 (72/136): perl-overload-1.37-507.fc41.noarch.rp 1.8 MB/s | 46 kB 00:00 (73/136): perl-overloading-0.02-507.fc41.noarch 536 kB/s | 13 kB 00:00 (74/136): perl-parent-0.241-502.fc40.noarch.rpm 614 kB/s | 15 kB 00:00 (75/136): perl-podlators-5.01-502.fc40.noarch.r 4.7 MB/s | 121 kB 00:00 (76/136): perl-vars-1.05-507.fc41.noarch.rpm 538 kB/s | 13 kB 00:00 (77/136): protobuf-3.19.6-8.fc40.i686.rpm 29 MB/s | 1.1 MB 00:00 (78/136): pyproject-rpm-macros-1.12.1-1.fc41.no 1.6 MB/s | 41 kB 00:00 (79/136): python-pip-wheel-24.0-2.fc41.noarch.r 44 MB/s | 1.5 MB 00:00 (80/136): python-rpm-macros-3.12-9.fc41.noarch. 765 kB/s | 18 kB 00:00 (81/136): python3-3.12.3-2.fc41.i686.rpm 1.1 MB/s | 27 kB 00:00 (82/136): python3-argparse-dataclass-2.0.0-5.fc 815 kB/s | 20 kB 00:00 (83/136): python3-blinker-1.7.0-1.fc40.noarch.r 1.4 MB/s | 35 kB 00:00 (84/136): python3-boto3-1.34.121-1.fc41.noarch. 12 MB/s | 355 kB 00:00 (85/136): python3-cachetools-5.3.3-1.fc41.noarc 1.5 MB/s | 37 kB 00:00 (86/136): python3-charset-normalizer-3.3.2-3.fc 3.9 MB/s | 99 kB 00:00 (87/136): python3-botocore-1.34.121-1.fc41.noar 113 MB/s | 6.8 MB 00:00 (88/136): python3-click-8.1.7-4.fc40.noarch.rpm 9.0 MB/s | 226 kB 00:00 (89/136): python3-configargparse-1.7-3.fc40.noa 1.7 MB/s | 52 kB 00:00 (90/136): python3-dateutil-2.8.2-13.fc40.noarch 13 MB/s | 345 kB 00:00 (91/136): python3-devel-3.12.3-2.fc41.i686.rpm 9.9 MB/s | 275 kB 00:00 (92/136): python3-flask-3.0.3-4.fc41.noarch.rpm 7.1 MB/s | 194 kB 00:00 (93/136): python3-google-api-core-2.11.1-7.fc40 6.4 MB/s | 176 kB 00:00 (94/136): python3-google-auth-2.30.0-1.fc41.noa 9.9 MB/s | 257 kB 00:00 (95/136): python3-google-cloud-core-2.3.3-4.fc4 2.5 MB/s | 63 kB 00:00 (96/136): python3-google-cloud-storage-2.14.0-4 6.9 MB/s | 189 kB 00:00 (97/136): 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python3-libs-3.12.3-2.fc41.i686.rpm 86 MB/s | 8.9 MB 00:00 (112/136): python3-protobuf-3.19.6-8.fc40.i686. 14 MB/s | 398 kB 00:00 (113/136): python3-pyasn1-0.6.0-1.fc41.noarch.r 6.8 MB/s | 180 kB 00:00 (114/136): python3-pyasn1-modules-0.6.0-1.fc41. 12 MB/s | 313 kB 00:00 (115/136): python3-pytz-2024.1-1.fc40.noarch.rp 2.3 MB/s | 59 kB 00:00 (116/136): python3-pytest-7.4.3-3.fc40.noarch.r 44 MB/s | 1.8 MB 00:00 (117/136): python3-requests-2.31.0-5.fc41.noarc 5.3 MB/s | 142 kB 00:00 (118/136): python3-reretry-0.11.8-8.fc40.noarch 689 kB/s | 18 kB 00:00 (119/136): python3-rpm-generators-14-10.fc40.no 1.2 MB/s | 30 kB 00:00 (120/136): python3-rpm-macros-3.12-9.fc41.noarc 519 kB/s | 13 kB 00:00 (121/136): python3-rsa-4.9-5.fc40.noarch.rpm 2.8 MB/s | 70 kB 00:00 (122/136): python3-s3transfer-0.10.1-1.fc41.noa 5.0 MB/s | 142 kB 00:00 (123/136): python3-six-1.16.0-14.fc40.noarch.rp 1.5 MB/s | 41 kB 00:00 (124/136): python3-setuptools-69.2.0-3.fc41.noa 45 MB/s | 1.4 MB 00:00 (125/136): python3-snakemake-executor-plugin-cl 988 kB/s | 24 kB 00:00 (126/136): python3-snakemake-interface-common-1 1.7 MB/s | 44 kB 00:00 (127/136): python3-snakemake-interface-executor 2.2 MB/s | 55 kB 00:00 (128/136): python3-snakemake-interface-storage- 1.6 MB/s | 39 kB 00:00 (129/136): python3-snakemake-storage-plugin-s3- 975 kB/s | 23 kB 00:00 (130/136): python3-throttler-1.2.2-9.fc40.noarc 927 kB/s | 22 kB 00:00 (131/136): python3-urllib3-1.26.18-3.fc40.noarc 9.5 MB/s | 254 kB 00:00 (132/136): python3-werkzeug-3.0.3-1.fc41.noarch 17 MB/s | 438 kB 00:00 (133/136): python3-wrapt-1.16.0-3.fc40.i686.rpm 2.7 MB/s | 68 kB 00:00 (134/136): re2-20220601-5.fc40.i686.rpm 8.2 MB/s | 217 kB 00:00 (135/136): tzdata-2024a-8.fc41.noarch.rpm 17 MB/s | 431 kB 00:00 (136/136): vim-filesystem-9.1.452-1.fc41.noarch 675 kB/s | 17 kB 00:00 -------------------------------------------------------------------------------- Total 44 MB/s | 63 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : tzdata-2024a-8.fc41.noarch 1/136 Installing : python-rpm-macros-3.12-9.fc41.noarch 2/136 Installing : python3-rpm-macros-3.12-9.fc41.noarch 3/136 Installing : pyproject-rpm-macros-1.12.1-1.fc41.noarch 4/136 Installing : python-pip-wheel-24.0-2.fc41.noarch 5/136 Installing : openblas-0.3.26-4.fc40.i686 6/136 Installing : grpc-data-1.48.4-35.fc41.noarch 7/136 Installing : libgfortran-14.1.1-5.fc41.i686 8/136 Installing : openblas-openmp-0.3.26-4.fc40.i686 9/136 Installing : re2-1:20220601-5.fc40.i686 10/136 Installing : protobuf-3.19.6-8.fc40.i686 11/136 Installing : ncurses-6.4-12.20240127.fc40.i686 12/136 Installing : mpdecimal-2.5.1-9.fc40.i686 13/136 Installing : libquadmath-14.1.1-5.fc41.i686 14/136 Installing : flexiblas-netlib-3.4.4-1.fc41.i686 15/136 Installing : flexiblas-openblas-openmp-3.4.4-1.fc41.i686 16/136 Installing : flexiblas-3.4.4-1.fc41.i686 17/136 Installing : libb2-0.98.1-11.fc40.i686 18/136 Running scriptlet: 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python3-pluggy-1.3.0-3.fc40.noarch 105/136 Installing : python3-pytz-2024.1-1.fc40.noarch 106/136 Installing : python3-reretry-0.11.8-8.fc40.noarch 107/136 Installing : python3-setuptools-69.2.0-3.fc41.noarch 108/136 Installing : python3-protobuf-3.19.6-8.fc40.i686 109/136 Installing : python3-googleapis-common-protos-1.63.0-3.fc41.n 110/136 Installing : python3-google-crc32c-1.5.0-6.fc41.i686 111/136 Installing : python3-markupsafe-2.1.5-1.fc41.i686 112/136 Installing : python3-jinja2-3.1.4-2.fc41.noarch 113/136 Installing : python3-werkzeug-3.0.3-1.fc41.noarch 114/136 Installing : python3-google-resumable-media-2.7.0-3.fc40.noar 115/136 Installing : python3-rsa-4.9-5.fc40.noarch 116/136 Installing : python3-google-auth-1:2.30.0-1.fc41.noarch 117/136 Installing : python3-numpy-1:1.26.4-6.fc41.i686 118/136 Installing : python3-wrapt-1.16.0-3.fc40.i686 119/136 Installing : python3-snakemake-interface-storage-plugins-3.2. 120/136 Installing : c-ares-1.28.1-1.fc41.i686 121/136 Installing 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abseil-cpp-20240116.2-2.fc41.i686 add-determinism-0.2.0-9.fc41.i686 c-ares-1.28.1-1.fc41.i686 expat-2.6.2-1.fc41.i686 flexiblas-3.4.4-1.fc41.i686 flexiblas-netlib-3.4.4-1.fc41.i686 flexiblas-openblas-openmp-3.4.4-1.fc41.i686 google-crc32c-1.1.2-9.fc40.i686 groff-base-1.23.0-6.fc40.i686 grpc-data-1.48.4-35.fc41.noarch help2man-1.49.3-5.fc40.noarch libb2-0.98.1-11.fc40.i686 libgfortran-14.1.1-5.fc41.i686 libquadmath-14.1.1-5.fc41.i686 mpdecimal-2.5.1-9.fc40.i686 ncurses-6.4-12.20240127.fc40.i686 openblas-0.3.26-4.fc40.i686 openblas-openmp-0.3.26-4.fc40.i686 perl-AutoLoader-5.74-507.fc41.noarch perl-B-1.88-507.fc41.i686 perl-Carp-1.54-502.fc40.noarch perl-Class-Struct-0.68-507.fc41.noarch perl-Data-Dumper-2.189-504.fc41.i686 perl-Digest-1.20-502.fc40.noarch perl-Digest-MD5-2.59-3.fc40.i686 perl-DynaLoader-1.54-507.fc41.i686 perl-Encode-4:3.21-505.fc41.i686 perl-Errno-1.37-507.fc41.i686 perl-Exporter-5.78-3.fc40.noarch perl-Fcntl-1.15-507.fc41.i686 perl-File-Basename-2.86-507.fc41.noarch perl-File-Path-2.18-503.fc40.noarch perl-File-Temp-1:0.231.100-503.fc40.noarch perl-File-stat-1.13-507.fc41.noarch perl-FileHandle-2.05-507.fc41.noarch perl-Getopt-Long-1:2.57-4.fc41.noarch perl-Getopt-Std-1.13-507.fc41.noarch perl-HTTP-Tiny-0.088-5.fc40.noarch perl-IO-1.52-507.fc41.i686 perl-IO-Socket-IP-0.42-2.fc40.noarch perl-IO-Socket-SSL-2.085-1.fc40.noarch perl-IPC-Open3-1.22-507.fc41.noarch perl-MIME-Base64-3.16-503.fc40.i686 perl-Mozilla-CA-20240313-1.fc41.noarch perl-Net-SSLeay-1.94-3.fc40.i686 perl-POSIX-2.13-507.fc41.i686 perl-PathTools-3.91-503.fc41.i686 perl-Pod-Escapes-1:1.07-503.fc40.noarch perl-Pod-Perldoc-3.28.01-503.fc40.noarch perl-Pod-Simple-1:3.45-6.fc40.noarch perl-Pod-Usage-4:2.03-504.fc41.noarch perl-Scalar-List-Utils-5:1.63-503.fc40.i686 perl-SelectSaver-1.02-507.fc41.noarch perl-Socket-4:2.038-1.fc41.i686 perl-Storable-1:3.32-502.fc40.i686 perl-Symbol-1.09-507.fc41.noarch perl-Term-ANSIColor-5.01-504.fc40.noarch perl-Term-Cap-1.18-503.fc40.noarch perl-Text-ParseWords-3.31-502.fc40.noarch perl-Text-Tabs+Wrap-2024.001-1.fc41.noarch perl-Time-Local-2:1.350-5.fc40.noarch perl-URI-5.28-1.fc41.noarch perl-base-2.27-507.fc41.noarch perl-constant-1.33-503.fc40.noarch perl-if-0.61.000-507.fc41.noarch perl-interpreter-4:5.38.2-507.fc41.i686 perl-libnet-3.15-503.fc40.noarch perl-libs-4:5.38.2-507.fc41.i686 perl-locale-1.10-507.fc41.noarch perl-mro-1.28-507.fc41.i686 perl-overload-1.37-507.fc41.noarch perl-overloading-0.02-507.fc41.noarch perl-parent-1:0.241-502.fc40.noarch perl-podlators-1:5.01-502.fc40.noarch perl-vars-1.05-507.fc41.noarch protobuf-3.19.6-8.fc40.i686 pyproject-rpm-macros-1.12.1-1.fc41.noarch python-pip-wheel-24.0-2.fc41.noarch python-rpm-macros-3.12-9.fc41.noarch python3-3.12.3-2.fc41.i686 python3-argparse-dataclass-2.0.0-5.fc40.noarch python3-blinker-1.7.0-1.fc40.noarch python3-boto3-1.34.121-1.fc41.noarch python3-botocore-1.34.121-1.fc41.noarch python3-cachetools-5.3.3-1.fc41.noarch python3-charset-normalizer-3.3.2-3.fc40.noarch python3-click-8.1.7-4.fc40.noarch python3-configargparse-1.7-3.fc40.noarch python3-dateutil-1:2.8.2-13.fc40.noarch python3-devel-3.12.3-2.fc41.i686 python3-flask-1:3.0.3-4.fc41.noarch python3-google-api-core-1:2.11.1-7.fc40.noarch python3-google-auth-1:2.30.0-1.fc41.noarch python3-google-cloud-core-2.3.3-4.fc40.noarch python3-google-cloud-storage-2.14.0-4.fc40.noarch python3-google-crc32c-1.5.0-6.fc41.i686 python3-google-resumable-media-2.7.0-3.fc40.noarch python3-googleapis-common-protos-1.63.0-3.fc41.noarch python3-grpcio-1.48.4-35.fc41.i686 python3-grpcio-status-1.48.4-35.fc41.noarch python3-idna-3.7-1.fc41.noarch python3-iniconfig-1.1.1-16.fc40.noarch python3-itsdangerous-2.1.2-7.fc40.noarch python3-jinja2-3.1.4-2.fc41.noarch python3-jmespath-1.0.1-6.fc40.noarch python3-libs-3.12.3-2.fc41.i686 python3-markupsafe-2.1.5-1.fc41.i686 python3-numpy-1:1.26.4-6.fc41.i686 python3-packaging-24.0-1.fc41.noarch python3-pandas-1.5.3-7.fc39~bootstrap.i686 python3-pluggy-1.3.0-3.fc40.noarch python3-protobuf-3.19.6-8.fc40.i686 python3-pyasn1-0.6.0-1.fc41.noarch python3-pyasn1-modules-0.6.0-1.fc41.noarch python3-pytest-7.4.3-3.fc40.noarch python3-pytz-2024.1-1.fc40.noarch python3-requests-2.31.0-5.fc41.noarch python3-reretry-0.11.8-8.fc40.noarch python3-rpm-generators-14-10.fc40.noarch python3-rpm-macros-3.12-9.fc41.noarch python3-rsa-4.9-5.fc40.noarch python3-s3transfer-0.10.1-1.fc41.noarch python3-setuptools-69.2.0-3.fc41.noarch python3-six-1.16.0-14.fc40.noarch python3-snakemake-executor-plugin-cluster-generic-1.0.9-1.fc41.noarch python3-snakemake-interface-common-1.17.2-1.fc41.noarch python3-snakemake-interface-executor-plugins-9.1.1-1.fc41.noarch python3-snakemake-interface-storage-plugins-3.2.2-1.fc41.noarch python3-snakemake-storage-plugin-s3-0.2.11-1.fc41.noarch python3-throttler-1.2.2-9.fc40.noarch python3-urllib3-1.26.18-3.fc40.noarch python3-werkzeug-3.0.3-1.fc41.noarch python3-wrapt-1.16.0-3.fc40.i686 re2-1:20220601-5.fc40.i686 tzdata-2024a-8.fc41.noarch vim-filesystem-2:9.1.452-1.fc41.noarch Complete! Finish: build setup for snakemake-8.13.0-3.fc41.src.rpm Start: rpmbuild snakemake-8.13.0-3.fc41.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1717891200 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.xU71sZ + umask 022 + cd /builddir/build/BUILD/snakemake-8.13.0-build + test -d /builddir/build/BUILD/snakemake-8.13.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/snakemake-8.13.0-build + /usr/bin/rm -rf /builddir/build/BUILD/snakemake-8.13.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-8.13.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-8.13.0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.y4lPc9 + umask 022 + cd /builddir/build/BUILD/snakemake-8.13.0-build + cd /builddir/build/BUILD/snakemake-8.13.0-build + rm -rf snakemake-8.13.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-8.13.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd snakemake-8.13.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP . recursedown('.') recursedown('./.github') recursedown('./.github/ISSUE_TEMPLATE') recursedown('./.github/workflows') recursedown('./.github/workflows/scripts') recursedown('./apidocs') recursedown('./apidocs/_templates') recursedown('./apidocs/api_reference') recursedown('./apidocs/api_reference/internal') recursedown('./docs') recursedown('./docs/_static') recursedown('./docs/executing') recursedown('./docs/getting_started') recursedown('./docs/getting_started/img') recursedown('./docs/project_info') recursedown('./docs/project_info/img') recursedown('./docs/snakefiles') recursedown('./docs/snakefiles/images') recursedown('./docs/tutorial') recursedown('./docs/tutorial/workflow') recursedown('./examples') recursedown('./examples/c') recursedown('./examples/c/include') recursedown('./examples/c/src') recursedown('./examples/cufflinks') recursedown('./examples/cufflinks/mapped') recursedown('./examples/flux') recursedown('./examples/hello-world') recursedown('./examples/hello-world/envs') recursedown('./examples/hello-world/scripts') recursedown('./examples/idea') recursedown('./examples/latex') recursedown('./examples/mirna') recursedown('./images') recursedown('./misc') recursedown('./misc/nano') recursedown('./misc/nano/syntax') recursedown('./misc/vim') recursedown('./misc/vim/ftdetect') recursedown('./misc/vim/ftplugin') recursedown('./misc/vim/ftplugin/snakemake') recursedown('./misc/vim/syntax') recursedown('./playground') recursedown('./playground/iteration') recursedown('./snakemake') recursedown('./snakemake/caching') recursedown('./snakemake/common') recursedown('./snakemake/common/tests') recursedown('./snakemake/common/tests/testcases') recursedown('./snakemake/common/tests/testcases/groups') recursedown('./snakemake/common/tests/testcases/simple') recursedown('./snakemake/deployment') recursedown('./snakemake/executors') recursedown('./snakemake/linting') recursedown('./snakemake/remote') recursedown('./snakemake/report') recursedown('./snakemake/report/html_reporter') recursedown('./snakemake/report/html_reporter/data') recursedown('./snakemake/report/html_reporter/template') recursedown('./snakemake/report/html_reporter/template/components') recursedown('./snakemake/script') recursedown('./snakemake/template_rendering') recursedown('./snakemake/unit_tests') recursedown('./snakemake/unit_tests/templates') recursedown('./tests') recursedown('./tests/knapsack') recursedown('./tests/linting') recursedown('./tests/linting/absolute_paths') recursedown('./tests/linting/envvars') recursedown('./tests/linting/iofile_by_index') recursedown('./tests/linting/log_directive') recursedown('./tests/linting/long_run') recursedown('./tests/linting/missing_software_definition') recursedown('./tests/linting/mixed_func_and_rules') 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recursedown('./tests/test07/expected-results') recursedown('./tests/test08') recursedown('./tests/test08/expected-results') recursedown('./tests/test09') recursedown('./tests/test09/expected-results') recursedown('./tests/test10') recursedown('./tests/test10/expected-results') recursedown('./tests/test11') recursedown('./tests/test11/expected-results') recursedown('./tests/test12') recursedown('./tests/test12/expected-results') recursedown('./tests/test13') recursedown('./tests/test13/expected-results') recursedown('./tests/test15') recursedown('./tests/test15/expected-results') recursedown('./tests/testHighWorkload') recursedown('./tests/testHighWorkload/mfa') recursedown('./tests/test_all_temp') recursedown('./tests/test_all_temp/expected-results') recursedown('./tests/test_ancient') recursedown('./tests/test_ancient/expected-results') recursedown('./tests/test_ancient_dag') recursedown('./tests/test_ancient_dag/expected-results') recursedown('./tests/test_archive') recursedown('./tests/test_archive/expected-results') recursedown('./tests/test_azure_batch') recursedown('./tests/test_azure_batch/expected-results') recursedown('./tests/test_bash') recursedown('./tests/test_bash/expected-results') recursedown('./tests/test_batch') recursedown('./tests/test_batch/expected-results') recursedown('./tests/test_batch_final') recursedown('./tests/test_batch_final/expected-results') recursedown('./tests/test_benchmark') recursedown('./tests/test_benchmark/expected-results') recursedown('./tests/test_benchmark_jsonl') recursedown('./tests/test_benchmark_jsonl/expected-results') recursedown('./tests/test_cache_multioutput') recursedown('./tests/test_cache_multioutput/expected-results') recursedown('./tests/test_checkpoint_allowed_rules') recursedown('./tests/test_checkpoint_allowed_rules/expected-results') recursedown('./tests/test_checkpoint_open') recursedown('./tests/test_checkpoint_open/expected-results') recursedown('./tests/test_checkpoint_open/expected-results/storage') recursedown('./tests/test_checkpoint_open/storage') recursedown('./tests/test_checkpoints') recursedown('./tests/test_checkpoints/expected-results') recursedown('./tests/test_checkpoints/expected-results/aggregated') recursedown('./tests/test_checkpoints/samples') recursedown('./tests/test_checkpoints_dir') recursedown('./tests/test_checkpoints_dir/expected-results') recursedown('./tests/test_checkpoints_dir/expected-results/aggregated') recursedown('./tests/test_checkpoints_dir/samples') recursedown('./tests/test_cloud_checkpoints_issue574') recursedown('./tests/test_cloud_checkpoints_issue574/expected-results') recursedown('./tests/test_cluster_cancelscript') recursedown('./tests/test_cluster_cancelscript/expected-results') recursedown('./tests/test_conda') recursedown('./tests/test_conda/expected-results') recursedown('./tests/test_conda_cmd_exe') recursedown('./tests/test_conda_cmd_exe/expected-results') 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recursedown('./tests/test_directory/expected-results/dir_to_link_to') recursedown('./tests/test_directory/expected-results/some') recursedown('./tests/test_directory/expected-results/some/shadow') recursedown('./tests/test_directory/expected-results/some_other_dir') recursedown('./tests/test_directory/input_dir') recursedown('./tests/test_dup_out_patterns') recursedown('./tests/test_dup_out_patterns/expected-results') recursedown('./tests/test_empty_include') recursedown('./tests/test_empty_include/expected-results') recursedown('./tests/test_ensure') recursedown('./tests/test_ensure/expected-results') recursedown('./tests/test_env_modules') recursedown('./tests/test_env_modules/expected-results') recursedown('./tests/test_envvars') recursedown('./tests/test_envvars/expected-results') recursedown('./tests/test_exists') recursedown('./tests/test_expand_flag') recursedown('./tests/test_expand_flag/expected-results') recursedown('./tests/test_expand_list_of_functions') 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recursedown('./tests/test_update_config/expected-results') recursedown('./tests/test_update_flag') recursedown('./tests/test_update_flag/expected-results') recursedown('./tests/test_url_include') recursedown('./tests/test_url_include/expected-results') recursedown('./tests/test_use_rule_same_module') recursedown('./tests/test_use_rule_same_module/expected-results') recursedown('./tests/test_validate') recursedown('./tests/test_validate/expected-results') recursedown('./tests/test_wildcard_count_ambiguity') recursedown('./tests/test_wildcard_count_ambiguity/expected-results') recursedown('./tests/test_wildcard_keyword') recursedown('./tests/test_wildcard_keyword/expected-results') recursedown('./tests/test_workflow_profile') recursedown('./tests/test_workflow_profile/dummy-general-profile') recursedown('./tests/test_workflow_profile/expected-results') recursedown('./tests/test_workflow_profile/workflow') recursedown('./tests/test_workflow_profile/workflow/profiles') recursedown('./tests/test_workflow_profile/workflow/profiles/default') recursedown('./tests/test_wrapper') recursedown('./tests/test_wrapper/expected-results') recursedown('./tests/test_xrootd') recursedown('./tests/test_yaml_config') recursedown('./tests/test_yaml_config/expected-results') ./setup.py: no change ./versioneer.py: no change ./.github/workflows/scripts/sacct-proxy.py: updating ./apidocs/conf.py: updating ./docs/conf.py: updating ./examples/hello-world/scripts/plot-hist.py: no change ./snakemake/__init__.py: no change ./snakemake/__main__.py: no change ./snakemake/_version.py: no change ./snakemake/api.py: no change ./snakemake/benchmark.py: no change ./snakemake/checkpoints.py: no change ./snakemake/cli.py: no change ./snakemake/cwl.py: no change ./snakemake/dag.py: no change ./snakemake/decorators.py: no change ./snakemake/exceptions.py: no change ./snakemake/gui.py: no change ./snakemake/io.py: no change ./snakemake/ioflags.py: no change ./snakemake/ioutils.py: no change ./snakemake/jobs.py: no change ./snakemake/logging.py: no change ./snakemake/modules.py: no change ./snakemake/notebook.py: no change ./snakemake/output_index.py: no change ./snakemake/parser.py: no change ./snakemake/path_modifier.py: no change ./snakemake/persistence.py: no change ./snakemake/profiles.py: no change ./snakemake/resources.py: no change ./snakemake/ruleinfo.py: no change ./snakemake/rules.py: no change ./snakemake/scheduler.py: no change ./snakemake/settings.py: no change ./snakemake/shell.py: no change ./snakemake/sourcecache.py: no change ./snakemake/spawn_jobs.py: no change ./snakemake/storage.py: no change ./snakemake/target_jobs.py: no change ./snakemake/utils.py: no change ./snakemake/workflow.py: no change ./snakemake/wrapper.py: no change ./snakemake/caching/__init__.py: no change ./snakemake/caching/hash.py: no change ./snakemake/caching/local.py: no change ./snakemake/caching/storage.py: no change ./snakemake/common/__init__.py: no change ./snakemake/common/argparse.py: no change ./snakemake/common/configfile.py: no change ./snakemake/common/git.py: no change ./snakemake/common/tbdstring.py: no change ./snakemake/common/workdir_handler.py: no change ./snakemake/common/tests/__init__.py: no change ./snakemake/common/tests/testcases/__init__.py: no change ./snakemake/common/tests/testcases/groups/__init__.py: no change ./snakemake/common/tests/testcases/simple/__init__.py: no change ./snakemake/deployment/__init__.py: no change ./snakemake/deployment/conda.py: no change ./snakemake/deployment/containerize.py: no change ./snakemake/deployment/env_modules.py: no change ./snakemake/deployment/singularity.py: no change ./snakemake/executors/__init__.py: no change ./snakemake/executors/dryrun.py: no change ./snakemake/executors/google_lifesciences_helper.py: updating ./snakemake/executors/local.py: no change ./snakemake/executors/touch.py: no change ./snakemake/linting/__init__.py: no change ./snakemake/linting/links.py: no change ./snakemake/linting/rules.py: no change ./snakemake/linting/snakefiles.py: no change ./snakemake/remote/AzBlob.py: no change ./snakemake/remote/EGA.py: no change ./snakemake/remote/FTP.py: no change ./snakemake/remote/GS.py: no change ./snakemake/remote/HTTP.py: no change ./snakemake/remote/NCBI.py: no change ./snakemake/remote/S3.py: no change ./snakemake/remote/S3Mocked.py: no change ./snakemake/remote/SFTP.py: no change ./snakemake/remote/XRootD.py: no change ./snakemake/remote/__init__.py: no change ./snakemake/remote/dropbox.py: no change ./snakemake/remote/gfal.py: no change ./snakemake/remote/gridftp.py: no change ./snakemake/remote/iRODS.py: no change ./snakemake/remote/webdav.py: no change ./snakemake/remote/zenodo.py: no change ./snakemake/report/__init__.py: no change ./snakemake/report/common.py: no change ./snakemake/report/rulegraph_spec.py: no change ./snakemake/report/html_reporter/__init__.py: no change ./snakemake/report/html_reporter/common.py: no change ./snakemake/report/html_reporter/data/__init__.py: no change ./snakemake/report/html_reporter/data/categories.py: no change ./snakemake/report/html_reporter/data/common.py: no change ./snakemake/report/html_reporter/data/configfiles.py: no change ./snakemake/report/html_reporter/data/packages.py: no change ./snakemake/report/html_reporter/data/results.py: no change ./snakemake/report/html_reporter/data/rulegraph.py: no change ./snakemake/report/html_reporter/data/rules.py: no change ./snakemake/report/html_reporter/data/runtimes.py: no change ./snakemake/report/html_reporter/data/timeline.py: no change ./snakemake/report/html_reporter/template/__init__.py: no change ./snakemake/report/html_reporter/template/components/__init__.py: no change ./snakemake/script/__init__.py: no change ./snakemake/template_rendering/__init__.py: no change ./snakemake/template_rendering/jinja2.py: no change ./snakemake/template_rendering/yte.py: no change ./snakemake/unit_tests/__init__.py: no change ./snakemake/unit_tests/templates/__init__.py: no change ./tests/__init__.py: no change ./tests/common.py: no change ./tests/conftest.py: no change ./tests/test_api.py: no change ./tests/test_args.py: no change ./tests/test_executor_test_suite.py: no change ./tests/test_expand.py: no change ./tests/test_io.py: no change ./tests/test_linting.py: no change ./tests/test_persistence.py: no change ./tests/test_schema.py: no change ./tests/test_script.py: no change ./tests/testapi.py: no change ./tests/tests.py: no change ./tests/test_benchmark/script.py: updating ./tests/test_benchmark_jsonl/script.py: updating ./tests/test_conda_python_3_7_script/test_script.py: no change ./tests/test_conda_python_script/test_script.py: no change ./tests/test_deploy_sources/scripts/test.py: no change ./tests/test_filegraph/scripts/vis.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_a.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_all.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_b.py: no change ./tests/test_get_log_both/wrapper.py: no change ./tests/test_get_log_complex/wrapper.py: no change ./tests/test_get_log_none/wrapper.py: no change ./tests/test_get_log_stderr/wrapper.py: no change ./tests/test_get_log_stdout/wrapper.py: no change ./tests/test_github_issue1158/qsub.py: updating ./tests/test_github_issue627/job.py: updating ./tests/test_github_issue_14/local_script.py: no change ./tests/test_github_issue_14/pythonTest.py: updating ./tests/test_handover/script.py: no change ./tests/test_issue1046/my_wrapper/wrapper.py: no change ./tests/test_issue916/local_script.py: no change ./tests/test_issue916/pythonTest.py: updating ./tests/test_job_properties/qsub.py: updating ./tests/test_local_import/bar.py: no change ./tests/test_local_import/foo/__init__.py: no change ./tests/test_paramspace/scripts/simulate.py: no change ./tests/test_paramspace_single_wildcard/scripts/simulate.py: no change ./tests/test_pipes/producer.py: no change ./tests/test_prebuilt_conda_script/test.py: no change ./tests/test_prebuilt_conda_script/dummy_package/src/dummy/__init__.py: no change ./tests/test_prebuilt_conda_script/dummy_package/src/dummy/dummy.py: no change ./tests/test_report_display_code/test.py: no change ./tests/test_restartable_job_cmd_exit_1/qsub.py: updating ./tests/test_restartable_job_qsub_exit_1/qsub.py: updating ./tests/test_script/scripts/test.py: no change ./tests/test_script_pre_py39/script.py: no change ./tests/test_script_py/scripts/test.py: no change ./tests/test_singularity/script.py: no change ./tests/test_singularity_module/script.py: no change ./tests/test_string_resources/qsub.py: updating ./tests/test_tibanna/cleanup.py: no change ./tests/test_tibanna/scripts/step2.py: no change + sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py + sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py + sed -r -i 's@python -m@"/usr/bin/python3 -m@g' tests/tests.py + for editor in nano vim + cp -vp misc/nano/README.md README-nano.md 'misc/nano/README.md' -> 'README-nano.md' + for editor in nano vim + cp -vp misc/vim/README.md README-vim.md 'misc/vim/README.md' -> 'README-vim.md' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.trEQaR + umask 022 + cd /builddir/build/BUILD/snakemake-8.13.0-build + cd snakemake-8.13.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0-3.fc41.i386-pyproject-buildrequires -x reports,messaging,google-cloud,azure Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 69.2.0) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info creating snakemake.egg-info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt writing manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement not satisfied: wheel Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0-3.fc41.i386-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-8.13.0-3.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 100 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 53 kB/s | 3.8 kB 00:00 local 129 kB/s | 3.8 kB 00:00 Package help2man-1.49.3-5.fc40.noarch is already installed. Package pyproject-rpm-macros-1.12.1-1.fc41.noarch is already installed. Package python3-devel-3.12.3-2.fc41.i686 is already installed. Package python3-devel-3.12.3-2.fc41.i686 is already installed. Package python3-boto3-1.34.121-1.fc41.noarch is already installed. Package python3-flask-1:3.0.3-4.fc41.noarch is already installed. Package python3-google-cloud-storage-2.14.0-4.fc40.noarch is already installed. Package python3-packaging-24.0-1.fc41.noarch is already installed. Package python3-pandas-1.5.3-7.fc39~bootstrap.i686 is already installed. Package python3-pytest-7.4.3-3.fc40.noarch is already installed. Package python3-setuptools-69.2.0-3.fc41.noarch is already installed. Package python3-snakemake-executor-plugin-cluster-generic-1.0.9-1.fc41.noarch is already installed. Package python3-snakemake-storage-plugin-s3-0.2.11-1.fc41.noarch is already installed. Package vim-filesystem-2:9.1.452-1.fc41.noarch is already installed. Dependencies resolved. ============================================================================================================= Package Arch Version Repository Size ============================================================================================================= Installing: python3-pip noarch 24.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.9 M python3-wheel noarch 1:0.43.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149 k Transaction Summary ============================================================================================================= Install 2 Packages Total download size: 3.1 M Installed size: 15 M Downloading Packages: (1/2): python3-wheel-0.43.0-1.fc41.noarch.rpm 2.3 MB/s | 149 kB 00:00 (2/2): python3-pip-24.0-2.fc41.noarch.rpm 24 MB/s | 2.9 MB 00:00 -------------------------------------------------------------------------------- Total 25 MB/s | 3.1 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-wheel-1:0.43.0-1.fc41.noarch 1/2 Installing : python3-pip-24.0-2.fc41.noarch 2/2 Running scriptlet: python3-pip-24.0-2.fc41.noarch 2/2 Installed: python3-pip-24.0-2.fc41.noarch python3-wheel-1:0.43.0-1.fc41.noarch Complete! Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1717891200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.WfHn2J + umask 022 + cd /builddir/build/BUILD/snakemake-8.13.0-build + cd snakemake-8.13.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0-3.fc41.i386-pyproject-buildrequires -x reports,messaging,google-cloud,azure Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 69.2.0) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/snakemake-8.13.0.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: appdirs Handling immutables from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: immutables Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: connection-pool >=0.0.3 Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: datrie Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: docutils Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: gitpython Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: humanfriendly Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.4) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: jsonschema Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: nbformat Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 24.0) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: psutil Handling pulp <2.9,>=2.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pulp <2.9,>=2.3.1 Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pyyaml Handling requests <3.0,>=2.8.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests <3.0,>=2.8.1 (installed: requests 2.31.0) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open <8.0,>=4.0 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: smart-open <8.0,>=4.0 Handling snakemake-interface-executor-plugins <10.0,>=9.1.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-executor-plugins <10.0,>=9.1.0 (installed: snakemake-interface-executor-plugins 9.1.1) Handling snakemake-interface-common <2.0,>=1.17.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-common <2.0,>=1.17.0 (installed: snakemake-interface-common 1.17.2) Handling snakemake-interface-storage-plugins <4.0,>=3.1.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-storage-plugins <4.0,>=3.1.0 (installed: snakemake-interface-storage-plugins 3.2.2) Handling snakemake-interface-report-plugins <2.0.0,>=1.0.0 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: snakemake-interface-report-plugins <2.0.0,>=1.0.0 Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: stopit Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: tabulate Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort <2.0,>=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: toposort <2.0,>=1.10 Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: yte <2.0,>=1.5.1 Handling dpath <3.0.0,>=2.1.6 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: dpath <3.0.0,>=2.1.6 Handling conda-inject <2.0,>=1.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: conda-inject <2.0,>=1.3.1 Handling slack-sdk ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: slack-sdk ; extra == 'messaging' Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pygments ; extra == 'reports' + cat /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0-3.fc41.i386-pyproject-buildrequires + rm -rfv snakemake-8.13.0.dist-info/ removed 'snakemake-8.13.0.dist-info/LICENSE.md' removed 'snakemake-8.13.0.dist-info/METADATA' removed 'snakemake-8.13.0.dist-info/entry_points.txt' removed 'snakemake-8.13.0.dist-info/top_level.txt' removed directory 'snakemake-8.13.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-8.13.0-3.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 94 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 64 kB/s | 3.8 kB 00:00 local 81 kB/s | 3.8 kB 00:00 Package python3-jinja2-3.1.4-2.fc41.noarch is already installed. Package python3-requests-2.31.0-5.fc41.noarch is already installed. Package python3-snakemake-interface-common-1.17.2-1.fc41.noarch is already installed. Package python3-snakemake-interface-executor-plugins-9.1.1-1.fc41.noarch is already installed. Package python3-snakemake-interface-storage-plugins-3.2.2-1.fc41.noarch is already installed. Package help2man-1.49.3-5.fc40.noarch is already installed. Package pyproject-rpm-macros-1.12.1-1.fc41.noarch is already installed. Package python3-devel-3.12.3-2.fc41.i686 is already installed. Package python3-devel-3.12.3-2.fc41.i686 is already installed. Package python3-boto3-1.34.121-1.fc41.noarch is already installed. Package python3-configargparse-1.7-3.fc40.noarch is already installed. Package python3-flask-1:3.0.3-4.fc41.noarch is already installed. Package python3-google-cloud-storage-2.14.0-4.fc40.noarch is already installed. Package python3-packaging-24.0-1.fc41.noarch is already installed. Package python3-pandas-1.5.3-7.fc39~bootstrap.i686 is already installed. Package python3-pip-24.0-2.fc41.noarch is already installed. Package python3-pytest-7.4.3-3.fc40.noarch is already installed. Package python3-reretry-0.11.8-8.fc40.noarch is already installed. Package python3-setuptools-69.2.0-3.fc41.noarch is already installed. Package python3-snakemake-executor-plugin-cluster-generic-1.0.9-1.fc41.noarch is already installed. Package python3-snakemake-storage-plugin-s3-0.2.11-1.fc41.noarch is already installed. Package python3-throttler-1.2.2-9.fc40.noarch is already installed. Package python3-wheel-1:0.43.0-1.fc41.noarch is already installed. Package python3-wrapt-1.16.0-3.fc40.i686 is already installed. Package vim-filesystem-2:9.1.452-1.fc41.noarch is already installed. Dependencies resolved. ================================================================================================================================================== Package Arch Version Repository Size ================================================================================================================================================== Installing: python3-GitPython noarch 3.1.40-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 361 k python3-appdirs noarch 1.4.4-13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 23 k python3-conda-inject noarch 1.3.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19 k python3-connection_pool noarch 0.0.3-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17 k python3-datrie i686 0.8.2-25.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 167 k python3-docutils noarch 0.20.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 996 k python3-dpath noarch 2.1.6-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36 k python3-humanfriendly noarch 10.0-10.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 132 k python3-immutables i686 0.20-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 61 k python3-jsonschema noarch 4.19.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 186 k python3-nbformat noarch 5.9.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121 k python3-psutil i686 5.9.8-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 263 k python3-pulp noarch 2.8.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 230 k python3-pygments noarch 2.17.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 M python3-pyyaml i686 6.0.1-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 222 k python3-slackclient noarch 3.27.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 487 k python3-smart_open noarch 7.0.4-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 115 k python3-snakemake-interface-report-plugins noarch 1.0.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k python3-stopit noarch 1.1.2-10.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 25 k python3-tabulate noarch 0.9.0-9.fc41 copr_base 71 k python3-toposort noarch 1.10-10.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20 k python3-yte noarch 1.5.4-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 31 k Installing dependencies: git-core i686 2.45.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 M less i686 643-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 181 k libcbor i686 0.11.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36 k libedit i686 3.1-51.20240517cvs.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 110 k libfido2 i686 1.14.0-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 104 k libyaml i686 0.2.5-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 62 k openssh i686 9.6p1-1.fc41.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 431 k openssh-clients i686 9.6p1-1.fc41.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 765 k python3-attrs noarch 23.2.0-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 111 k python3-boto noarch 2.49.0-21.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 M python3-fastjsonschema noarch 2.19.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 57 k python3-gitdb noarch 4.0.10-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 128 k python3-jsonschema-specifications noarch 2023.11.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k python3-jupyter-core noarch 5.7.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 71 k python3-plac noarch 1.4.3-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 62 k python3-platformdirs noarch 3.11.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40 k python3-referencing noarch 0.35.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 76 k python3-rpds-py i686 0.18.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 318 k python3-smmap noarch 5.0.0-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55 k python3-traitlets noarch 5.14.3-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 196 k python3-zombie-imp noarch 0.0.2-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 29 k Transaction Summary ================================================================================================================================================== Install 43 Packages Total download size: 15 M Installed size: 69 M Downloading Packages: (1/43): python3-tabulate-0.9.0-9.fc41.noarch.rp 4.2 MB/s | 71 kB 00:00 (2/43): libcbor-0.11.0-1.fc40.i686.rpm 784 kB/s | 36 kB 00:00 (3/43): less-643-4.fc40.i686.rpm 2.5 MB/s | 181 kB 00:00 (4/43): libedit-3.1-51.20240517cvs.fc41.i686.rp 3.4 MB/s | 110 kB 00:00 (5/43): libfido2-1.14.0-4.fc40.i686.rpm 4.0 MB/s | 104 kB 00:00 (6/43): git-core-2.45.2-1.fc41.i686.rpm 40 MB/s | 4.8 MB 00:00 (7/43): libyaml-0.2.5-14.fc40.i686.rpm 2.2 MB/s | 62 kB 00:00 (8/43): openssh-9.6p1-1.fc41.9.i686.rpm 13 MB/s | 431 kB 00:00 (9/43): python3-GitPython-3.1.40-4.fc40.noarch. 20 MB/s | 361 kB 00:00 (10/43): openssh-clients-9.6p1-1.fc41.9.i686.rp 19 MB/s | 765 kB 00:00 (11/43): python3-appdirs-1.4.4-13.fc40.noarch.r 693 kB/s | 23 kB 00:00 (12/43): python3-attrs-23.2.0-6.fc41.noarch.rpm 5.1 MB/s | 111 kB 00:00 (13/43): python3-conda-inject-1.3.2-1.fc41.noar 1.3 MB/s | 19 kB 00:00 (14/43): python3-connection_pool-0.0.3-11.fc40. 865 kB/s | 17 kB 00:00 (15/43): python3-boto-2.49.0-21.fc40.noarch.rpm 53 MB/s | 1.6 MB 00:00 (16/43): python3-datrie-0.8.2-25.fc40.i686.rpm 7.2 MB/s | 167 kB 00:00 (17/43): python3-docutils-0.20.1-3.fc40.noarch. 46 MB/s | 996 kB 00:00 (18/43): python3-dpath-2.1.6-1.fc40.noarch.rpm 1.8 MB/s | 36 kB 00:00 (19/43): python3-fastjsonschema-2.19.1-1.fc41.n 3.5 MB/s | 57 kB 00:00 (20/43): python3-gitdb-4.0.10-5.fc40.noarch.rpm 6.3 MB/s | 128 kB 00:00 (21/43): python3-humanfriendly-10.0-10.fc40.noa 8.9 MB/s | 132 kB 00:00 (22/43): python3-immutables-0.20-5.fc41.i686.rp 3.1 MB/s | 61 kB 00:00 (23/43): python3-jsonschema-4.19.1-3.fc40.noarc 11 MB/s | 186 kB 00:00 (24/43): python3-jsonschema-specifications-2023 1.0 MB/s | 21 kB 00:00 (25/43): python3-jupyter-core-5.7.2-1.fc41.noar 3.4 MB/s | 71 kB 00:00 (26/43): python3-nbformat-5.9.2-3.fc40.noarch.r 7.6 MB/s | 121 kB 00:00 (27/43): python3-plac-1.4.3-1.fc41.noarch.rpm 3.0 MB/s | 62 kB 00:00 (28/43): python3-platformdirs-3.11.0-3.fc40.noa 2.3 MB/s | 40 kB 00:00 (29/43): python3-psutil-5.9.8-1.fc40.i686.rpm 12 MB/s | 263 kB 00:00 (30/43): python3-pulp-2.8.0-4.fc41.noarch.rpm 9.7 MB/s | 230 kB 00:00 (31/43): python3-pygments-2.17.2-3.fc40.noarch. 82 MB/s | 2.3 MB 00:00 (32/43): python3-pyyaml-6.0.1-14.fc40.i686.rpm 9.1 MB/s | 222 kB 00:00 (33/43): python3-referencing-0.35.1-1.fc41.noar 3.6 MB/s | 76 kB 00:00 (34/43): python3-rpds-py-0.18.1-1.fc41.i686.rpm 15 MB/s | 318 kB 00:00 (35/43): python3-slackclient-3.27.2-1.fc41.noar 21 MB/s | 487 kB 00:00 (36/43): python3-smart_open-7.0.4-1.fc41.noarch 5.3 MB/s | 115 kB 00:00 (37/43): python3-smmap-5.0.0-8.fc40.noarch.rpm 3.9 MB/s | 55 kB 00:00 (38/43): python3-snakemake-interface-report-plu 1.0 MB/s | 21 kB 00:00 (39/43): python3-toposort-1.10-10.fc40.noarch.r 1.5 MB/s | 20 kB 00:00 (40/43): python3-stopit-1.1.2-10.fc40.noarch.rp 1.2 MB/s | 25 kB 00:00 (41/43): python3-yte-1.5.4-3.fc40.noarch.rpm 2.2 MB/s | 31 kB 00:00 (42/43): python3-traitlets-5.14.3-1.fc41.noarch 9.4 MB/s | 196 kB 00:00 (43/43): python3-zombie-imp-0.0.2-5.fc40.noarch 1.5 MB/s | 29 kB 00:00 -------------------------------------------------------------------------------- Total 40 MB/s | 15 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-traitlets-5.14.3-1.fc41.noarch 1/43 Installing : python3-attrs-23.2.0-6.fc41.noarch 2/43 Installing : python3-zombie-imp-0.0.2-5.fc40.noarch 3/43 Installing : python3-boto-2.49.0-21.fc40.noarch 4/43 Installing : python3-smmap-5.0.0-8.fc40.noarch 5/43 Installing : python3-gitdb-4.0.10-5.fc40.noarch 6/43 Installing : python3-platformdirs-3.11.0-3.fc40.noarch 7/43 Installing : python3-jupyter-core-5.7.2-1.fc41.noarch 8/43 Installing : python3-plac-1.4.3-1.fc41.noarch 9/43 Installing : python3-fastjsonschema-2.19.1-1.fc41.noarch 10/43 Installing : python3-dpath-2.1.6-1.fc40.noarch 11/43 Installing : python3-smart_open-7.0.4-1.fc41.noarch 12/43 Installing : python3-toposort-1.10-10.fc40.noarch 13/43 Installing : python3-stopit-1.1.2-10.fc40.noarch 14/43 Installing : python3-snakemake-interface-report-plugins-1.0.0-2 15/43 Installing : python3-slackclient-3.27.2-1.fc41.noarch 16/43 Installing : python3-pygments-2.17.2-3.fc40.noarch 17/43 Installing : python3-pulp-2.8.0-4.fc41.noarch 18/43 Installing : python3-humanfriendly-10.0-10.fc40.noarch 19/43 Installing : python3-docutils-0.20.1-3.fc40.noarch 20/43 Installing : python3-connection_pool-0.0.3-11.fc40.noarch 21/43 Installing : python3-appdirs-1.4.4-13.fc40.noarch 22/43 Installing : python3-tabulate-0.9.0-9.fc41.noarch 23/43 Installing : python3-rpds-py-0.18.1-1.fc41.i686 24/43 Installing : python3-referencing-0.35.1-1.fc41.noarch 25/43 Installing : python3-jsonschema-specifications-2023.11.2-3.fc40 26/43 Installing : python3-jsonschema-4.19.1-3.fc40.noarch 27/43 Installing : openssh-9.6p1-1.fc41.9.i686 28/43 Installing : libyaml-0.2.5-14.fc40.i686 29/43 Installing : python3-pyyaml-6.0.1-14.fc40.i686 30/43 Installing : libedit-3.1-51.20240517cvs.fc41.i686 31/43 Installing : libcbor-0.11.0-1.fc40.i686 32/43 Installing : libfido2-1.14.0-4.fc40.i686 33/43 Installing : openssh-clients-9.6p1-1.fc41.9.i686 34/43 Running scriptlet: openssh-clients-9.6p1-1.fc41.9.i686 34/43 Installing : less-643-4.fc40.i686 35/43 Installing : python3-conda-inject-1.3.2-1.fc41.noarch 36/43 Installing : python3-yte-1.5.4-3.fc40.noarch 37/43 Installing : python3-nbformat-5.9.2-3.fc40.noarch 38/43 Installing : git-core-2.45.2-1.fc41.i686 39/43 Installing : python3-GitPython-3.1.40-4.fc40.noarch 40/43 Installing : python3-psutil-5.9.8-1.fc40.i686 41/43 Installing : python3-immutables-0.20-5.fc41.i686 42/43 Installing : python3-datrie-0.8.2-25.fc40.i686 43/43 Running scriptlet: python3-datrie-0.8.2-25.fc40.i686 43/43 Installed: git-core-2.45.2-1.fc41.i686 less-643-4.fc40.i686 libcbor-0.11.0-1.fc40.i686 libedit-3.1-51.20240517cvs.fc41.i686 libfido2-1.14.0-4.fc40.i686 libyaml-0.2.5-14.fc40.i686 openssh-9.6p1-1.fc41.9.i686 openssh-clients-9.6p1-1.fc41.9.i686 python3-GitPython-3.1.40-4.fc40.noarch python3-appdirs-1.4.4-13.fc40.noarch python3-attrs-23.2.0-6.fc41.noarch python3-boto-2.49.0-21.fc40.noarch python3-conda-inject-1.3.2-1.fc41.noarch python3-connection_pool-0.0.3-11.fc40.noarch python3-datrie-0.8.2-25.fc40.i686 python3-docutils-0.20.1-3.fc40.noarch python3-dpath-2.1.6-1.fc40.noarch python3-fastjsonschema-2.19.1-1.fc41.noarch python3-gitdb-4.0.10-5.fc40.noarch python3-humanfriendly-10.0-10.fc40.noarch python3-immutables-0.20-5.fc41.i686 python3-jsonschema-4.19.1-3.fc40.noarch python3-jsonschema-specifications-2023.11.2-3.fc40.noarch python3-jupyter-core-5.7.2-1.fc41.noarch python3-nbformat-5.9.2-3.fc40.noarch python3-plac-1.4.3-1.fc41.noarch python3-platformdirs-3.11.0-3.fc40.noarch python3-psutil-5.9.8-1.fc40.i686 python3-pulp-2.8.0-4.fc41.noarch python3-pygments-2.17.2-3.fc40.noarch python3-pyyaml-6.0.1-14.fc40.i686 python3-referencing-0.35.1-1.fc41.noarch python3-rpds-py-0.18.1-1.fc41.i686 python3-slackclient-3.27.2-1.fc41.noarch python3-smart_open-7.0.4-1.fc41.noarch python3-smmap-5.0.0-8.fc40.noarch python3-snakemake-interface-report-plugins-1.0.0-2.fc41.noarch python3-stopit-1.1.2-10.fc40.noarch python3-tabulate-0.9.0-9.fc41.noarch python3-toposort-1.10-10.fc40.noarch python3-traitlets-5.14.3-1.fc41.noarch python3-yte-1.5.4-3.fc40.noarch python3-zombie-imp-0.0.2-5.fc40.noarch Complete! Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1717891200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.xDkMbi + umask 022 + cd /builddir/build/BUILD/snakemake-8.13.0-build + cd snakemake-8.13.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0-3.fc41.i386-pyproject-buildrequires -x reports,messaging,google-cloud,azure Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 69.2.0) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/snakemake-8.13.0.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling immutables from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: immutables (installed: immutables 0.20) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.4) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.2) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 24.0) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.8) Handling pulp <2.9,>=2.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp <2.9,>=2.3.1 (installed: pulp 2.8.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests <3.0,>=2.8.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests <3.0,>=2.8.1 (installed: requests 2.31.0) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open <8.0,>=4.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open <8.0,>=4.0 (installed: smart-open 7.0.4) Handling snakemake-interface-executor-plugins <10.0,>=9.1.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-executor-plugins <10.0,>=9.1.0 (installed: snakemake-interface-executor-plugins 9.1.1) Handling snakemake-interface-common <2.0,>=1.17.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-common <2.0,>=1.17.0 (installed: snakemake-interface-common 1.17.2) Handling snakemake-interface-storage-plugins <4.0,>=3.1.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-storage-plugins <4.0,>=3.1.0 (installed: snakemake-interface-storage-plugins 3.2.2) Handling snakemake-interface-report-plugins <2.0.0,>=1.0.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-report-plugins <2.0.0,>=1.0.0 (installed: snakemake-interface-report-plugins 1.0.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort <2.0,>=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort <2.0,>=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.4) Handling dpath <3.0.0,>=2.1.6 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: dpath <3.0.0,>=2.1.6 (installed: dpath 2.1.6) Handling conda-inject <2.0,>=1.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: conda-inject <2.0,>=1.3.1 (installed: conda-inject 1.3.2) Handling slack-sdk ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slack-sdk ; extra == 'messaging' (installed: slack-sdk 3.27.2) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0-3.fc41.i386-pyproject-buildrequires + rm -rfv snakemake-8.13.0.dist-info/ removed 'snakemake-8.13.0.dist-info/LICENSE.md' removed 'snakemake-8.13.0.dist-info/METADATA' removed 'snakemake-8.13.0.dist-info/top_level.txt' removed 'snakemake-8.13.0.dist-info/entry_points.txt' removed directory 'snakemake-8.13.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-8.13.0-3.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 86 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 66 kB/s | 3.8 kB 00:00 local 80 kB/s | 3.8 kB 00:00 Package python3-conda-inject-1.3.2-1.fc41.noarch is already installed. Package python3-dpath-2.1.6-1.fc40.noarch is already installed. Package python3-jinja2-3.1.4-2.fc41.noarch is already installed. Package python3-pulp-2.8.0-4.fc41.noarch is already installed. Package python3-requests-2.31.0-5.fc41.noarch is already installed. Package python3-smart_open-7.0.4-1.fc41.noarch is already installed. Package python3-snakemake-interface-common-1.17.2-1.fc41.noarch is already installed. Package python3-snakemake-interface-executor-plugins-9.1.1-1.fc41.noarch is already installed. Package python3-snakemake-interface-report-plugins-1.0.0-2.fc41.noarch is already installed. Package python3-snakemake-interface-storage-plugins-3.2.2-1.fc41.noarch is already installed. Package python3-toposort-1.10-10.fc40.noarch is already installed. Package python3-yte-1.5.4-3.fc40.noarch is already installed. Package help2man-1.49.3-5.fc40.noarch is already installed. Package pyproject-rpm-macros-1.12.1-1.fc41.noarch is already installed. Package python3-devel-3.12.3-2.fc41.i686 is already installed. Package python3-devel-3.12.3-2.fc41.i686 is already installed. Package python3-appdirs-1.4.4-13.fc40.noarch is already installed. Package python3-boto3-1.34.121-1.fc41.noarch is already installed. Package python3-configargparse-1.7-3.fc40.noarch is already installed. Package python3-connection_pool-0.0.3-11.fc40.noarch is already installed. Package python3-datrie-0.8.2-25.fc40.i686 is already installed. Package python3-docutils-0.20.1-3.fc40.noarch is already installed. Package python3-flask-1:3.0.3-4.fc41.noarch is already installed. Package python3-GitPython-3.1.40-4.fc40.noarch is already installed. Package python3-google-cloud-storage-2.14.0-4.fc40.noarch is already installed. Package python3-humanfriendly-10.0-10.fc40.noarch is already installed. Package python3-immutables-0.20-5.fc41.i686 is already installed. Package python3-jsonschema-4.19.1-3.fc40.noarch is already installed. Package python3-nbformat-5.9.2-3.fc40.noarch is already installed. Package python3-packaging-24.0-1.fc41.noarch is already installed. Package python3-pandas-1.5.3-7.fc39~bootstrap.i686 is already installed. Package python3-pip-24.0-2.fc41.noarch is already installed. Package python3-psutil-5.9.8-1.fc40.i686 is already installed. Package python3-pygments-2.17.2-3.fc40.noarch is already installed. Package python3-pytest-7.4.3-3.fc40.noarch is already installed. Package python3-pyyaml-6.0.1-14.fc40.i686 is already installed. Package python3-reretry-0.11.8-8.fc40.noarch is already installed. Package python3-setuptools-69.2.0-3.fc41.noarch is already installed. Package python3-slackclient-3.27.2-1.fc41.noarch is already installed. Package python3-snakemake-executor-plugin-cluster-generic-1.0.9-1.fc41.noarch is already installed. Package python3-snakemake-storage-plugin-s3-0.2.11-1.fc41.noarch is already installed. Package python3-stopit-1.1.2-10.fc40.noarch is already installed. Package python3-tabulate-0.9.0-9.fc41.noarch is already installed. Package python3-throttler-1.2.2-9.fc40.noarch is already installed. Package python3-wheel-1:0.43.0-1.fc41.noarch is already installed. Package python3-wrapt-1.16.0-3.fc40.i686 is already installed. Package vim-filesystem-2:9.1.452-1.fc41.noarch is already installed. Dependencies resolved. Nothing to do. Complete! Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1717891200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.imTLkM + umask 022 + cd /builddir/build/BUILD/snakemake-8.13.0-build + cd snakemake-8.13.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0-3.fc41.i386-pyproject-buildrequires -x reports,messaging,google-cloud,azure Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 69.2.0) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/snakemake-8.13.0.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling immutables from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: immutables (installed: immutables 0.20) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.4) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.2) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 24.0) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.8) Handling pulp <2.9,>=2.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp <2.9,>=2.3.1 (installed: pulp 2.8.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests <3.0,>=2.8.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests <3.0,>=2.8.1 (installed: requests 2.31.0) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open <8.0,>=4.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open <8.0,>=4.0 (installed: smart-open 7.0.4) Handling snakemake-interface-executor-plugins <10.0,>=9.1.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-executor-plugins <10.0,>=9.1.0 (installed: snakemake-interface-executor-plugins 9.1.1) Handling snakemake-interface-common <2.0,>=1.17.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-common <2.0,>=1.17.0 (installed: snakemake-interface-common 1.17.2) Handling snakemake-interface-storage-plugins <4.0,>=3.1.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-storage-plugins <4.0,>=3.1.0 (installed: snakemake-interface-storage-plugins 3.2.2) Handling snakemake-interface-report-plugins <2.0.0,>=1.0.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-report-plugins <2.0.0,>=1.0.0 (installed: snakemake-interface-report-plugins 1.0.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort <2.0,>=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort <2.0,>=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.4) Handling dpath <3.0.0,>=2.1.6 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: dpath <3.0.0,>=2.1.6 (installed: dpath 2.1.6) Handling conda-inject <2.0,>=1.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: conda-inject <2.0,>=1.3.1 (installed: conda-inject 1.3.2) Handling slack-sdk ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slack-sdk ; extra == 'messaging' (installed: slack-sdk 3.27.2) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0-3.fc41.i386-pyproject-buildrequires + rm -rfv snakemake-8.13.0.dist-info/ removed 'snakemake-8.13.0.dist-info/LICENSE.md' removed 'snakemake-8.13.0.dist-info/METADATA' removed 'snakemake-8.13.0.dist-info/entry_points.txt' removed 'snakemake-8.13.0.dist-info/top_level.txt' removed directory 'snakemake-8.13.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.aF8eJd + umask 022 + cd /builddir/build/BUILD/snakemake-8.13.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-8.13.0 + mkdir -p /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/pyproject-wheeldir Processing /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir/pip-modern-metadata-9g3flu_d/snakemake.egg-info writing /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir/pip-modern-metadata-9g3flu_d/snakemake.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir/pip-modern-metadata-9g3flu_d/snakemake.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir/pip-modern-metadata-9g3flu_d/snakemake.egg-info/entry_points.txt writing requirements to /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir/pip-modern-metadata-9g3flu_d/snakemake.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir/pip-modern-metadata-9g3flu_d/snakemake.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir/pip-modern-metadata-9g3flu_d/snakemake.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir/pip-modern-metadata-9g3flu_d/snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file '/builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir/pip-modern-metadata-9g3flu_d/snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir/pip-modern-metadata-9g3flu_d/snakemake-8.13.0.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: snakemake Building wheel for snakemake (pyproject.toml): started Running command Building wheel for snakemake (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/snakemake copying snakemake/wrapper.py -> build/lib/snakemake copying snakemake/workflow.py -> build/lib/snakemake copying snakemake/utils.py -> build/lib/snakemake copying snakemake/target_jobs.py -> build/lib/snakemake copying snakemake/storage.py -> build/lib/snakemake copying snakemake/spawn_jobs.py -> build/lib/snakemake copying snakemake/sourcecache.py -> build/lib/snakemake copying snakemake/shell.py -> build/lib/snakemake copying snakemake/settings.py -> build/lib/snakemake copying snakemake/scheduler.py -> build/lib/snakemake copying snakemake/rules.py -> build/lib/snakemake copying snakemake/ruleinfo.py -> build/lib/snakemake copying snakemake/resources.py -> build/lib/snakemake copying snakemake/profiles.py -> build/lib/snakemake copying snakemake/persistence.py -> build/lib/snakemake copying snakemake/path_modifier.py -> build/lib/snakemake copying snakemake/parser.py -> build/lib/snakemake copying snakemake/output_index.py -> build/lib/snakemake copying snakemake/notebook.py -> build/lib/snakemake copying snakemake/modules.py -> build/lib/snakemake copying snakemake/logging.py -> build/lib/snakemake copying snakemake/jobs.py -> build/lib/snakemake copying snakemake/ioutils.py -> build/lib/snakemake copying snakemake/ioflags.py -> build/lib/snakemake copying snakemake/io.py -> build/lib/snakemake copying snakemake/gui.py -> build/lib/snakemake copying snakemake/exceptions.py -> build/lib/snakemake copying snakemake/decorators.py -> build/lib/snakemake copying snakemake/dag.py -> build/lib/snakemake copying snakemake/cwl.py -> build/lib/snakemake copying snakemake/cli.py -> build/lib/snakemake copying snakemake/checkpoints.py -> build/lib/snakemake copying snakemake/benchmark.py -> build/lib/snakemake copying snakemake/api.py -> build/lib/snakemake copying snakemake/_version.py -> build/lib/snakemake copying snakemake/__main__.py -> build/lib/snakemake copying snakemake/__init__.py -> build/lib/snakemake creating build/lib/snakemake/unit_tests copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests creating build/lib/snakemake/template_rendering copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering creating build/lib/snakemake/script copying snakemake/script/__init__.py -> build/lib/snakemake/script creating build/lib/snakemake/report copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report copying snakemake/report/common.py -> build/lib/snakemake/report copying snakemake/report/__init__.py -> build/lib/snakemake/report creating build/lib/snakemake/remote copying snakemake/remote/zenodo.py -> build/lib/snakemake/remote copying snakemake/remote/webdav.py -> build/lib/snakemake/remote copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote copying snakemake/remote/gfal.py -> build/lib/snakemake/remote copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote copying snakemake/remote/__init__.py -> build/lib/snakemake/remote copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote copying snakemake/remote/S3.py -> build/lib/snakemake/remote copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote copying snakemake/remote/GS.py -> build/lib/snakemake/remote copying snakemake/remote/FTP.py -> build/lib/snakemake/remote copying snakemake/remote/EGA.py -> build/lib/snakemake/remote copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote creating build/lib/snakemake/linting copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting copying snakemake/linting/rules.py -> build/lib/snakemake/linting copying snakemake/linting/links.py -> build/lib/snakemake/linting copying snakemake/linting/__init__.py -> build/lib/snakemake/linting creating build/lib/snakemake/executors copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors copying snakemake/executors/touch.py -> build/lib/snakemake/executors copying snakemake/executors/local.py -> build/lib/snakemake/executors copying snakemake/executors/dryrun.py -> build/lib/snakemake/executors copying snakemake/executors/__init__.py -> build/lib/snakemake/executors creating build/lib/snakemake/deployment copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment creating build/lib/snakemake/common copying snakemake/common/workdir_handler.py -> build/lib/snakemake/common copying snakemake/common/tbdstring.py -> build/lib/snakemake/common copying snakemake/common/git.py -> build/lib/snakemake/common copying snakemake/common/configfile.py -> build/lib/snakemake/common copying snakemake/common/argparse.py -> build/lib/snakemake/common copying snakemake/common/__init__.py -> build/lib/snakemake/common creating build/lib/snakemake/caching copying snakemake/caching/storage.py -> build/lib/snakemake/caching copying snakemake/caching/local.py -> build/lib/snakemake/caching copying snakemake/caching/hash.py -> build/lib/snakemake/caching copying snakemake/caching/__init__.py -> build/lib/snakemake/caching creating build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates creating build/lib/snakemake/report/html_reporter copying snakemake/report/html_reporter/common.py -> build/lib/snakemake/report/html_reporter copying snakemake/report/html_reporter/__init__.py -> build/lib/snakemake/report/html_reporter creating build/lib/snakemake/report/html_reporter/template copying snakemake/report/html_reporter/template/__init__.py -> build/lib/snakemake/report/html_reporter/template creating build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/timeline.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/runtimes.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/rules.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/rulegraph.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/results.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/packages.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/configfiles.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/common.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/categories.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/__init__.py -> build/lib/snakemake/report/html_reporter/data creating build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/__init__.py -> build/lib/snakemake/report/html_reporter/template/components creating build/lib/snakemake/common/tests copying snakemake/common/tests/__init__.py -> build/lib/snakemake/common/tests creating build/lib/snakemake/common/tests/testcases copying snakemake/common/tests/testcases/__init__.py -> build/lib/snakemake/common/tests/testcases creating build/lib/snakemake/common/tests/testcases/simple copying snakemake/common/tests/testcases/simple/__init__.py -> build/lib/snakemake/common/tests/testcases/simple creating build/lib/snakemake/common/tests/testcases/groups copying snakemake/common/tests/testcases/groups/__init__.py -> build/lib/snakemake/common/tests/testcases/groups copying snakemake/report.css -> build/lib/snakemake copying snakemake/gui.html -> build/lib/snakemake copying snakemake/executors/jobscript.sh -> build/lib/snakemake/executors copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/report/html_reporter/template/style.css -> build/lib/snakemake/report/html_reporter/template copying snakemake/report/html_reporter/template/index.html.jinja2 -> build/lib/snakemake/report/html_reporter/template copying snakemake/report/html_reporter/template/logo.svg -> build/lib/snakemake/report/html_reporter/template copying snakemake/report/html_reporter/template/components/subcategory.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/stats.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/search_results.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/rule_info.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/rule_graph.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/result_view_button.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/result_info.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/report_info.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/navbar.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/menu.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/list_item.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/list_heading.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/icon.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/content.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/common.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/category.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/button.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/breadcrumbs.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/app.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/abstract_results.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/abstract_menu.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/common/tests/testcases/simple/Snakefile -> build/lib/snakemake/common/tests/testcases/simple copying snakemake/common/tests/testcases/groups/Snakefile -> build/lib/snakemake/common/tests/testcases/groups UPDATING build/lib/snakemake/_version.py set build/lib/snakemake/_version.py to '8.13.0' installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686 creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/_version.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/gui.html -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/report.css -> build/bdist.linux-i686/wheel/snakemake creating build/bdist.linux-i686/wheel/snakemake/caching copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-i686/wheel/snakemake/caching copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-i686/wheel/snakemake/caching copying build/lib/snakemake/caching/local.py -> build/bdist.linux-i686/wheel/snakemake/caching copying build/lib/snakemake/caching/storage.py -> build/bdist.linux-i686/wheel/snakemake/caching creating build/bdist.linux-i686/wheel/snakemake/common creating build/bdist.linux-i686/wheel/snakemake/common/tests creating build/bdist.linux-i686/wheel/snakemake/common/tests/testcases creating build/bdist.linux-i686/wheel/snakemake/common/tests/testcases/groups copying build/lib/snakemake/common/tests/testcases/groups/Snakefile -> build/bdist.linux-i686/wheel/snakemake/common/tests/testcases/groups copying build/lib/snakemake/common/tests/testcases/groups/__init__.py -> build/bdist.linux-i686/wheel/snakemake/common/tests/testcases/groups creating build/bdist.linux-i686/wheel/snakemake/common/tests/testcases/simple copying build/lib/snakemake/common/tests/testcases/simple/Snakefile -> build/bdist.linux-i686/wheel/snakemake/common/tests/testcases/simple copying build/lib/snakemake/common/tests/testcases/simple/__init__.py -> build/bdist.linux-i686/wheel/snakemake/common/tests/testcases/simple copying build/lib/snakemake/common/tests/testcases/__init__.py -> build/bdist.linux-i686/wheel/snakemake/common/tests/testcases copying build/lib/snakemake/common/tests/__init__.py -> build/bdist.linux-i686/wheel/snakemake/common/tests copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-i686/wheel/snakemake/common copying build/lib/snakemake/common/argparse.py -> build/bdist.linux-i686/wheel/snakemake/common copying build/lib/snakemake/common/configfile.py -> build/bdist.linux-i686/wheel/snakemake/common copying build/lib/snakemake/common/git.py -> build/bdist.linux-i686/wheel/snakemake/common copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-i686/wheel/snakemake/common copying build/lib/snakemake/common/workdir_handler.py -> build/bdist.linux-i686/wheel/snakemake/common creating build/bdist.linux-i686/wheel/snakemake/deployment copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-i686/wheel/snakemake/deployment copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-i686/wheel/snakemake/deployment copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-i686/wheel/snakemake/deployment copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-i686/wheel/snakemake/deployment copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-i686/wheel/snakemake/deployment creating build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/dryrun.py -> build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/local.py -> build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/touch.py -> build/bdist.linux-i686/wheel/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-i686/wheel/snakemake/executors creating build/bdist.linux-i686/wheel/snakemake/linting copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-i686/wheel/snakemake/linting copying build/lib/snakemake/linting/links.py -> build/bdist.linux-i686/wheel/snakemake/linting copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-i686/wheel/snakemake/linting copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-i686/wheel/snakemake/linting creating build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-i686/wheel/snakemake/remote copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-i686/wheel/snakemake/remote creating build/bdist.linux-i686/wheel/snakemake/report creating build/bdist.linux-i686/wheel/snakemake/report/html_reporter creating build/bdist.linux-i686/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/__init__.py -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/categories.py -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/common.py -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/configfiles.py -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/packages.py -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/results.py -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/rulegraph.py -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/rules.py -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/runtimes.py -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/timeline.py -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/data creating build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template copying build/lib/snakemake/report/html_reporter/template/logo.svg -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template copying build/lib/snakemake/report/html_reporter/template/index.html.jinja2 -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template copying build/lib/snakemake/report/html_reporter/template/style.css -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template creating build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/abstract_menu.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/abstract_results.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/app.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/breadcrumbs.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/button.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/category.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/common.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/content.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/icon.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/list_heading.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/list_item.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/menu.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/navbar.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/report_info.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/result_info.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/result_view_button.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/rule_graph.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/rule_info.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/search_results.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/stats.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/subcategory.js -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/__init__.py -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/__init__.py -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter/template copying build/lib/snakemake/report/html_reporter/__init__.py -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter copying build/lib/snakemake/report/html_reporter/common.py -> build/bdist.linux-i686/wheel/snakemake/report/html_reporter copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-i686/wheel/snakemake/report copying build/lib/snakemake/report/common.py -> build/bdist.linux-i686/wheel/snakemake/report copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-i686/wheel/snakemake/report creating build/bdist.linux-i686/wheel/snakemake/script copying build/lib/snakemake/script/__init__.py -> build/bdist.linux-i686/wheel/snakemake/script creating build/bdist.linux-i686/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-i686/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-i686/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-i686/wheel/snakemake/template_rendering creating build/bdist.linux-i686/wheel/snakemake/unit_tests creating build/bdist.linux-i686/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-i686/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-i686/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-i686/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-i686/wheel/snakemake/unit_tests copying build/lib/snakemake/__init__.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/__main__.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/api.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/benchmark.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/cli.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/cwl.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/dag.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/decorators.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/exceptions.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/gui.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/io.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/ioflags.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/ioutils.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/jobs.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/logging.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/modules.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/notebook.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/output_index.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/parser.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/persistence.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/profiles.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/resources.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/rules.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/scheduler.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/settings.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/shell.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/spawn_jobs.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/storage.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/utils.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/workflow.py -> build/bdist.linux-i686/wheel/snakemake copying build/lib/snakemake/wrapper.py -> build/bdist.linux-i686/wheel/snakemake running install_egg_info running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Copying snakemake.egg-info to build/bdist.linux-i686/wheel/snakemake-8.13.0-py3.12.egg-info running install_scripts creating build/bdist.linux-i686/wheel/snakemake-8.13.0.dist-info/WHEEL creating '/builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir/pip-wheel-2axjmdvj/.tmp-0jzhooiy/snakemake-8.13.0-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'snakemake/__init__.py' adding 'snakemake/__main__.py' adding 'snakemake/_version.py' adding 'snakemake/api.py' adding 'snakemake/benchmark.py' adding 'snakemake/checkpoints.py' adding 'snakemake/cli.py' adding 'snakemake/cwl.py' adding 'snakemake/dag.py' adding 'snakemake/decorators.py' adding 'snakemake/exceptions.py' adding 'snakemake/gui.html' adding 'snakemake/gui.py' adding 'snakemake/io.py' adding 'snakemake/ioflags.py' adding 'snakemake/ioutils.py' adding 'snakemake/jobs.py' adding 'snakemake/logging.py' adding 'snakemake/modules.py' adding 'snakemake/notebook.py' adding 'snakemake/output_index.py' adding 'snakemake/parser.py' adding 'snakemake/path_modifier.py' adding 'snakemake/persistence.py' adding 'snakemake/profiles.py' adding 'snakemake/report.css' adding 'snakemake/resources.py' adding 'snakemake/ruleinfo.py' adding 'snakemake/rules.py' adding 'snakemake/scheduler.py' adding 'snakemake/settings.py' adding 'snakemake/shell.py' adding 'snakemake/sourcecache.py' adding 'snakemake/spawn_jobs.py' adding 'snakemake/storage.py' adding 'snakemake/target_jobs.py' adding 'snakemake/utils.py' adding 'snakemake/workflow.py' adding 'snakemake/wrapper.py' adding 'snakemake/caching/__init__.py' adding 'snakemake/caching/hash.py' adding 'snakemake/caching/local.py' adding 'snakemake/caching/storage.py' adding 'snakemake/common/__init__.py' adding 'snakemake/common/argparse.py' adding 'snakemake/common/configfile.py' adding 'snakemake/common/git.py' adding 'snakemake/common/tbdstring.py' adding 'snakemake/common/workdir_handler.py' adding 'snakemake/common/tests/__init__.py' adding 'snakemake/common/tests/testcases/__init__.py' adding 'snakemake/common/tests/testcases/groups/Snakefile' adding 'snakemake/common/tests/testcases/groups/__init__.py' adding 'snakemake/common/tests/testcases/simple/Snakefile' adding 'snakemake/common/tests/testcases/simple/__init__.py' adding 'snakemake/deployment/__init__.py' adding 'snakemake/deployment/conda.py' adding 'snakemake/deployment/containerize.py' adding 'snakemake/deployment/env_modules.py' adding 'snakemake/deployment/singularity.py' adding 'snakemake/executors/__init__.py' adding 'snakemake/executors/dryrun.py' adding 'snakemake/executors/google_lifesciences_helper.py' adding 'snakemake/executors/jobscript.sh' adding 'snakemake/executors/local.py' adding 'snakemake/executors/touch.py' adding 'snakemake/linting/__init__.py' adding 'snakemake/linting/links.py' adding 'snakemake/linting/rules.py' adding 'snakemake/linting/snakefiles.py' adding 'snakemake/remote/AzBlob.py' adding 'snakemake/remote/EGA.py' adding 'snakemake/remote/FTP.py' adding 'snakemake/remote/GS.py' adding 'snakemake/remote/HTTP.py' adding 'snakemake/remote/NCBI.py' adding 'snakemake/remote/S3.py' adding 'snakemake/remote/S3Mocked.py' adding 'snakemake/remote/SFTP.py' adding 'snakemake/remote/XRootD.py' adding 'snakemake/remote/__init__.py' adding 'snakemake/remote/dropbox.py' adding 'snakemake/remote/gfal.py' adding 'snakemake/remote/gridftp.py' adding 'snakemake/remote/iRODS.py' adding 'snakemake/remote/webdav.py' adding 'snakemake/remote/zenodo.py' adding 'snakemake/report/__init__.py' adding 'snakemake/report/common.py' adding 'snakemake/report/rulegraph_spec.py' adding 'snakemake/report/html_reporter/__init__.py' adding 'snakemake/report/html_reporter/common.py' adding 'snakemake/report/html_reporter/data/__init__.py' adding 'snakemake/report/html_reporter/data/categories.py' adding 'snakemake/report/html_reporter/data/common.py' adding 'snakemake/report/html_reporter/data/configfiles.py' adding 'snakemake/report/html_reporter/data/packages.py' adding 'snakemake/report/html_reporter/data/results.py' adding 'snakemake/report/html_reporter/data/rulegraph.py' adding 'snakemake/report/html_reporter/data/rules.py' adding 'snakemake/report/html_reporter/data/runtimes.py' adding 'snakemake/report/html_reporter/data/timeline.py' adding 'snakemake/report/html_reporter/template/__init__.py' adding 'snakemake/report/html_reporter/template/index.html.jinja2' adding 'snakemake/report/html_reporter/template/logo.svg' adding 'snakemake/report/html_reporter/template/style.css' adding 'snakemake/report/html_reporter/template/components/__init__.py' adding 'snakemake/report/html_reporter/template/components/abstract_menu.js' adding 'snakemake/report/html_reporter/template/components/abstract_results.js' adding 'snakemake/report/html_reporter/template/components/app.js' adding 'snakemake/report/html_reporter/template/components/breadcrumbs.js' adding 'snakemake/report/html_reporter/template/components/button.js' adding 'snakemake/report/html_reporter/template/components/category.js' adding 'snakemake/report/html_reporter/template/components/common.js' adding 'snakemake/report/html_reporter/template/components/content.js' adding 'snakemake/report/html_reporter/template/components/icon.js' adding 'snakemake/report/html_reporter/template/components/list_heading.js' adding 'snakemake/report/html_reporter/template/components/list_item.js' adding 'snakemake/report/html_reporter/template/components/menu.js' adding 'snakemake/report/html_reporter/template/components/navbar.js' adding 'snakemake/report/html_reporter/template/components/report_info.js' adding 'snakemake/report/html_reporter/template/components/result_info.js' adding 'snakemake/report/html_reporter/template/components/result_view_button.js' adding 'snakemake/report/html_reporter/template/components/rule_graph.js' adding 'snakemake/report/html_reporter/template/components/rule_info.js' adding 'snakemake/report/html_reporter/template/components/search_results.js' adding 'snakemake/report/html_reporter/template/components/stats.js' adding 'snakemake/report/html_reporter/template/components/subcategory.js' adding 'snakemake/script/__init__.py' adding 'snakemake/template_rendering/__init__.py' adding 'snakemake/template_rendering/jinja2.py' adding 'snakemake/template_rendering/yte.py' adding 'snakemake/unit_tests/__init__.py' adding 'snakemake/unit_tests/templates/__init__.py' adding 'snakemake/unit_tests/templates/common.py.jinja2' adding 'snakemake/unit_tests/templates/ruletest.py.jinja2' adding 'snakemake-8.13.0.dist-info/LICENSE.md' adding 'snakemake-8.13.0.dist-info/METADATA' adding 'snakemake-8.13.0.dist-info/WHEEL' adding 'snakemake-8.13.0.dist-info/entry_points.txt' adding 'snakemake-8.13.0.dist-info/top_level.txt' adding 'snakemake-8.13.0.dist-info/RECORD' removing build/bdist.linux-i686/wheel Building wheel for snakemake (pyproject.toml): finished with status 'done' Created wheel for snakemake: filename=snakemake-8.13.0-py3-none-any.whl size=302892 sha256=db52dcb1d199480f7f1816664f675d2c1c2a996ddc67afd4c0d3b1b929153519 Stored in directory: /builddir/.cache/pip/wheels/e2/96/d1/bbc2d166b442caaf2b1270acd78919b6e7e15f5ed4f6a6fc95 Successfully built snakemake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Yp9Crn + umask 022 + cd /builddir/build/BUILD/snakemake-8.13.0-build + '[' /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/snakemake-8.13.0-build + mkdir /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-8.13.0 ++ ls /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/pyproject-wheeldir/snakemake-8.13.0-py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=snakemake==8.13.0 + '[' -z snakemake==8.13.0 ']' + TMPDIR=/builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/pyproject-wheeldir snakemake==8.13.0 Using pip 24.0 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/pyproject-wheeldir Processing ./pyproject-wheeldir/snakemake-8.13.0-py3-none-any.whl Installing collected packages: snakemake Creating /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/bin changing mode of /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/bin/snakemake to 755 Successfully installed snakemake-8.13.0 + '[' -d /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/bin/snakemake /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/bin/snakemake: updating + rm -rfv /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0-3.fc41.i386-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/lib/python3.12/site-packages ']' + site_dirs+=("/usr/lib/python3.12/site-packages") + '[' /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/lib/python3.12/site-packages '!=' /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/lib/python3.12/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.12/site-packages/snakemake-8.13.0.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/lib/python3.12/site-packages/snakemake-8.13.0.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT --record /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/lib/python3.12/site-packages/snakemake-8.13.0.dist-info/RECORD --output /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0-3.fc41.i386-pyproject-record + rm -fv /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/lib/python3.12/site-packages/snakemake-8.13.0.dist-info/RECORD removed '/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/lib/python3.12/site-packages/snakemake-8.13.0.dist-info/RECORD' + rm -fv /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/lib/python3.12/site-packages/snakemake-8.13.0.dist-info/REQUESTED removed '/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/lib/python3.12/site-packages/snakemake-8.13.0.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0-3.fc41.i386-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=2 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0-3.fc41.i386-pyproject-files --output-modules /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0-3.fc41.i386-pyproject-modules --buildroot /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0-3.fc41.i386-pyproject-record --prefix /usr -l snakemake + install -d /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/man/man1 + PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/bin + PYTHONPATH=/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/lib/python3.12/site-packages + help2man --no-info '--name=Metapackage for snakemake: messaging extras' snakemake + install -t /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/nano -D -m 0644 -p misc/nano/syntax/snakemake.nanorc + install -d /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/vim/vimfiles + cp -vrp misc/vim/README.md misc/vim/ftdetect misc/vim/ftplugin misc/vim/syntax /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/vim/vimfiles 'misc/vim/README.md' -> '/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/vim/vimfiles/README.md' 'misc/vim/ftdetect' -> '/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/vim/vimfiles/ftdetect' 'misc/vim/ftdetect/snakemake.vim' -> '/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/vim/vimfiles/ftdetect/snakemake.vim' 'misc/vim/ftplugin' -> '/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/vim/vimfiles/ftplugin' 'misc/vim/ftplugin/snakemake' -> '/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/vim/vimfiles/ftplugin/snakemake' 'misc/vim/ftplugin/snakemake/folding.vim' -> '/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/vim/vimfiles/ftplugin/snakemake/folding.vim' 'misc/vim/ftplugin/snakemake/sections.vim' -> '/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/vim/vimfiles/ftplugin/snakemake/sections.vim' 'misc/vim/syntax' -> '/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/vim/vimfiles/syntax' 'misc/vim/syntax/snakemake.vim' -> '/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/vim/vimfiles/syntax/snakemake.vim' + find /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/vim/vimfiles -type f -name 'README.*' -print -delete /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/vim/vimfiles/README.md + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/lib/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT Cannot initialize handler pyc: ModuleNotFoundError: No module named 'marshalparser' [src/multiprocess.rs:66:9] &cmd = Command { program: "/usr/bin/add-determinism", args: [ "/usr/bin/add-determinism", "--socket", "3", "--brp", "--handler", "ar,jar,javadoc", ], env: CommandEnv { clear: false, vars: { "SOURCE_DATE_EPOCH": Some( "1717891200", ), }, }, create_pidfd: false, } Bye! Bye! Bye! Bye! Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.1mf13G + umask 022 + cd /builddir/build/BUILD/snakemake-8.13.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-8.13.0 + '[' '!' -f /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0-3.fc41.i386-pyproject-modules ']' + PATH=/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/lib/python3.12/site-packages:/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/lib/python3.12/site-packages + _PYTHONSITE=/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/lib/python3.12/site-packages:/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0-3.fc41.i386-pyproject-modules -e '*.tests*' -e snakemake.executors.flux Check import: snakemake Check import: snakemake.api Check import: snakemake.benchmark Check import: snakemake.caching Check import: snakemake.caching.hash Check import: snakemake.caching.local Check import: snakemake.caching.storage Check import: snakemake.checkpoints Check import: snakemake.cli Check import: snakemake.common Check import: snakemake.common.argparse Check import: snakemake.common.configfile Check import: snakemake.common.git Check import: snakemake.common.tbdstring Check import: snakemake.common.workdir_handler Check import: snakemake.cwl Check import: snakemake.dag Check import: snakemake.decorators Check import: snakemake.deployment Check import: snakemake.deployment.conda Check import: snakemake.deployment.containerize Check import: snakemake.deployment.env_modules Check import: snakemake.deployment.singularity Check import: snakemake.exceptions Check import: snakemake.executors Check import: snakemake.executors.dryrun Check import: snakemake.executors.google_lifesciences_helper Check import: snakemake.executors.local Check import: snakemake.executors.touch Check import: snakemake.gui Check import: snakemake.io Check import: snakemake.ioflags Check import: snakemake.ioutils Check import: snakemake.jobs Check import: snakemake.linting Check import: snakemake.linting.links Check import: snakemake.linting.rules Check import: snakemake.linting.snakefiles Check import: snakemake.logging Check import: snakemake.modules Check import: snakemake.notebook Check import: snakemake.output_index Check import: snakemake.parser Check import: snakemake.path_modifier Check import: snakemake.persistence Check import: snakemake.profiles Check import: snakemake.remote Check import: snakemake.remote.AzBlob Check import: snakemake.remote.EGA Check import: snakemake.remote.FTP Check import: snakemake.remote.GS Check import: snakemake.remote.HTTP Check import: snakemake.remote.NCBI Check import: snakemake.remote.S3 Check import: snakemake.remote.S3Mocked Check import: snakemake.remote.SFTP Check import: snakemake.remote.XRootD Check import: snakemake.remote.dropbox Check import: snakemake.remote.gfal Check import: snakemake.remote.gridftp Check import: snakemake.remote.iRODS Check import: snakemake.remote.webdav Check import: snakemake.remote.zenodo Check import: snakemake.report Check import: snakemake.report.common Check import: snakemake.report.html_reporter Check import: snakemake.report.html_reporter.common Check import: snakemake.report.html_reporter.data Check import: snakemake.report.html_reporter.data.categories Check import: snakemake.report.html_reporter.data.common Check import: snakemake.report.html_reporter.data.configfiles Check import: snakemake.report.html_reporter.data.packages Check import: snakemake.report.html_reporter.data.results Check import: snakemake.report.html_reporter.data.rulegraph Check import: snakemake.report.html_reporter.data.rules Check import: snakemake.report.html_reporter.data.runtimes Check import: snakemake.report.html_reporter.data.timeline Check import: snakemake.report.html_reporter.template Check import: snakemake.report.html_reporter.template.components Check import: snakemake.report.rulegraph_spec Check import: snakemake.resources Check import: snakemake.ruleinfo Check import: snakemake.rules Check import: snakemake.scheduler Check import: snakemake.script Check import: snakemake.settings Check import: snakemake.shell Check import: snakemake.sourcecache Check import: snakemake.spawn_jobs Check import: snakemake.storage Check import: snakemake.target_jobs Check import: snakemake.template_rendering Check import: snakemake.template_rendering.jinja2 Check import: snakemake.template_rendering.yte Check import: snakemake.unit_tests Check import: snakemake.unit_tests.templates Check import: snakemake.utils Check import: snakemake.workflow Check import: snakemake.wrapper + ignore=' --ignore-glob=tests/test_google_lifesciences/*' + k='not test_deploy_sources' + ignore=' --ignore-glob=tests/test_google_lifesciences/* --ignore-glob=tests/test_conda_python_3_7_script/*' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/lib/python3.12/site-packages:/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=4 + /usr/bin/pytest -v -k 'not test_deploy_sources' '--ignore-glob=tests/test_google_lifesciences/*' '--ignore-glob=tests/test_conda_python_3_7_script/*' ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-7.4.3, pluggy-1.3.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0 collecting ... collected 53 items / 1 deselected / 52 selected tests/test_args.py::test_parse_batch PASSED [ 1%] tests/test_executor_test_suite.py::TestWorkflows::test_simple_workflow PASSED [ 3%] tests/test_executor_test_suite.py::TestWorkflows::test_group_workflow PASSED [ 5%] tests/test_expand.py::test_simple_expand PASSED [ 7%] tests/test_expand.py::test_allow_missing PASSED [ 9%] tests/test_io.py::test_wildcard_regex PASSED [ 11%] tests/test_io.py::test_expand PASSED [ 13%] tests/test_linting.py::test_lint[tab_usage-positive] PASSED [ 15%] tests/test_linting.py::test_lint[tab_usage-negative] PASSED [ 17%] tests/test_linting.py::test_lint[singularity-positive] PASSED [ 19%] tests/test_linting.py::test_lint[singularity-negative] PASSED [ 21%] tests/test_linting.py::test_lint[path_add-positive] PASSED [ 23%] tests/test_linting.py::test_lint[path_add-negative] PASSED [ 25%] tests/test_linting.py::test_lint[params_prefix-positive] PASSED [ 26%] tests/test_linting.py::test_lint[params_prefix-negative] PASSED [ 28%] tests/test_linting.py::test_lint[not_used_params-positive] PASSED [ 30%] tests/test_linting.py::test_lint[not_used_params-negative] PASSED [ 32%] tests/test_linting.py::test_lint[mixed_func_and_rules-positive] PASSED [ 34%] tests/test_linting.py::test_lint[mixed_func_and_rules-negative] PASSED [ 36%] tests/test_linting.py::test_lint[missing_software_definition-positive] PASSED [ 38%] tests/test_linting.py::test_lint[missing_software_definition-negative] PASSED [ 40%] tests/test_linting.py::test_lint[long_run-positive] PASSED [ 42%] tests/test_linting.py::test_lint[long_run-negative] PASSED [ 44%] tests/test_linting.py::test_lint[log_directive-positive] PASSED [ 46%] tests/test_linting.py::test_lint[log_directive-negative] PASSED [ 48%] tests/test_linting.py::test_lint[iofile_by_index-positive] PASSED [ 50%] tests/test_linting.py::test_lint[iofile_by_index-negative] PASSED [ 51%] tests/test_linting.py::test_lint[envvars-positive] PASSED [ 53%] tests/test_linting.py::test_lint[envvars-negative] PASSED [ 55%] tests/test_linting.py::test_lint[absolute_paths-positive] PASSED [ 57%] tests/test_linting.py::test_lint[absolute_paths-negative] PASSED [ 59%] tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 61%] tests/test_schema.py::test_config PASSED [ 63%] tests/test_schema.py::test_config_ref PASSED [ 65%] tests/test_schema.py::test_dataframe PASSED [ 67%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_shebang_and_second_manifest PASSED [ 69%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_with_shebang PASSED [ 71%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_without_shebang PASSED [ 73%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_empty_line_without_shebang PASSED [ 75%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_is_case_insensitive PASSED [ 76%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spacing_has_no_impact PASSED [ 78%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_formatting_not_touched_even_if_wrong PASSED [ 80%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spelt_wrong PASSED [ 82%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_shebang PASSED [ 84%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_without_shebang PASSED [ 86%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_spacing_around_language PASSED [ 88%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_has_non_cargo_block PASSED [ 90%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_missing_closing_fence PASSED [ 92%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_not_in_first_comment_block PASSED [ 94%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_outer_line_doc_comment PASSED [ 96%] tests/test_script.py::TestBashEncoder::test_named_list_one_named_one_str PASSED [ 98%] tests/test_script.py::TestBashEncoder::test_named_list_named_is_list PASSED [100%] =============================== warnings summary =============================== tests/test_executor_test_suite.py::TestWorkflows::test_simple_workflow :488: DeprecationWarning: Type google.protobuf.pyext._message.ScalarMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/test_executor_test_suite.py::TestWorkflows::test_simple_workflow :488: DeprecationWarning: Type google.protobuf.pyext._message.MessageMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/test_executor_test_suite.py::TestWorkflows::test_simple_workflow /usr/lib/python3.12/site-packages/google/protobuf/internal/well_known_types.py:92: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). _EPOCH_DATETIME = datetime.utcfromtimestamp(0) tests/test_schema.py: 12 warnings /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/snakemake/utils.py:52: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. from jsonschema import validators, RefResolver tests/test_schema.py::test_dataframe /usr/lib/python3.12/site-packages/pandas/core/algorithms.py:522: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) common = np.find_common_type([values.dtype, comps_array.dtype], []) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========== 52 passed, 1 deselected, 16 warnings in 90.69s (0:01:30) =========== + RPM_EC=0 ++ jobs -p + exit 0 Processing files: snakemake-8.13.0-3.fc41.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.U6gTOo + umask 022 + cd /builddir/build/BUILD/snakemake-8.13.0-build + cd snakemake-8.13.0 + DOCDIR=/builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/doc/snakemake + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/CHANGELOG.md /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/README.md /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/README-nano.md /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.13.0-build/snakemake-8.13.0/README-vim.md /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT/usr/share/doc/snakemake + RPM_EC=0 ++ jobs -p + exit 0 Provides: python3.12dist(snakemake) = 8.13 python3dist(snakemake) = 8.13 snakemake = 8.13.0-3.fc41 vim-snakemake = 8.13.0-3.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (python3.12dist(conda-inject) < 2~~ with python3.12dist(conda-inject) >= 1.3.1) (python3.12dist(dpath) < 3~~ with python3.12dist(dpath) >= 2.1.6) (python3.12dist(jinja2) < 4~~ with python3.12dist(jinja2) >= 3) (python3.12dist(pulp) < 2.9~~ with python3.12dist(pulp) >= 2.3.1) (python3.12dist(requests) < 3~~ with python3.12dist(requests) >= 2.8.1) (python3.12dist(smart-open) < 8~~ with python3.12dist(smart-open) >= 4) (python3.12dist(snakemake-interface-common) < 2~~ with python3.12dist(snakemake-interface-common) >= 1.17) (python3.12dist(snakemake-interface-executor-plugins) < 10~~ with python3.12dist(snakemake-interface-executor-plugins) >= 9.1) (python3.12dist(snakemake-interface-report-plugins) < 2~~ with python3.12dist(snakemake-interface-report-plugins) >= 1) (python3.12dist(snakemake-interface-storage-plugins) < 4~~ with python3.12dist(snakemake-interface-storage-plugins) >= 3.1) (python3.12dist(toposort) < 2~~ with python3.12dist(toposort) >= 1.10) (python3.12dist(yte) < 2~~ with python3.12dist(yte) >= 1.5.1) /usr/bin/python3 python(abi) = 3.12 python3.12dist(appdirs) python3.12dist(configargparse) python3.12dist(connection-pool) >= 0.0.3 python3.12dist(datrie) python3.12dist(docutils) python3.12dist(gitpython) python3.12dist(humanfriendly) python3.12dist(immutables) python3.12dist(jsonschema) python3.12dist(nbformat) python3.12dist(packaging) python3.12dist(psutil) python3.12dist(pyyaml) python3.12dist(reretry) python3.12dist(stopit) python3.12dist(tabulate) python3.12dist(throttler) python3.12dist(wrapt) Obsoletes: snakemake+azure < 8.1.0-1 snakemake+google-cloud < 8.1.0-1 snakemake-doc < 8.2.1-2 Processing files: snakemake+reports-8.13.0-3.fc41.noarch Provides: python3.12dist(snakemake[reports]) = 8.13 python3dist(snakemake[reports]) = 8.13 snakemake+reports = 8.13.0-3.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(pygments) Processing files: snakemake+messaging-8.13.0-3.fc41.noarch Provides: python3.12dist(snakemake[messaging]) = 8.13 python3dist(snakemake[messaging]) = 8.13 snakemake+messaging = 8.13.0-3.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(slack-sdk) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/snakemake-8.13.0-build/BUILDROOT Wrote: /builddir/build/SRPMS/snakemake-8.13.0-3.fc41.src.rpm Wrote: /builddir/build/RPMS/snakemake+messaging-8.13.0-3.fc41.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+reports-8.13.0-3.fc41.noarch.rpm Wrote: /builddir/build/RPMS/snakemake-8.13.0-3.fc41.noarch.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.3esPq2 + umask 022 + cd /builddir/build/BUILD/snakemake-8.13.0-build + test -d /builddir/build/BUILD/snakemake-8.13.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/snakemake-8.13.0-build + rm -rf /builddir/build/BUILD/snakemake-8.13.0-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild snakemake-8.13.0-3.fc41.src.rpm Finish: build phase for snakemake-8.13.0-3.fc41.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-i686-1717967562.714309/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-i686-1717967562.714309/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-i686-1717967562.714309/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/snakemake-8.13.0-3.fc41.src.rpm) Config(child) 1 minutes 56 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "snakemake+messaging", "epoch": null, "version": "8.13.0", "release": "3.fc41", "arch": "noarch" }, { "name": "snakemake+reports", "epoch": null, "version": "8.13.0", "release": "3.fc41", "arch": "noarch" }, { "name": "snakemake", "epoch": null, "version": "8.13.0", "release": "3.fc41", "arch": "noarch" }, { "name": "snakemake", "epoch": null, "version": "8.13.0", "release": "3.fc41", "arch": "src" } ] } RPMResults finished