## START: Set by rpmautospec ## (rpmautospec version 0.3.5) ## RPMAUTOSPEC: autorelease, autochangelog %define autorelease(e:s:pb:n) %{?-p:0.}%{lua: release_number = 1; base_release_number = tonumber(rpm.expand("%{?-b*}%{!?-b:1}")); print(release_number + base_release_number - 1); }%{?-e:.%{-e*}}%{?-s:.%{-s*}}%{!?-n:%{?dist}} ## END: Set by rpmautospec %bcond_without tests Name: python-pybids Version: 0.16.4 Release: %autorelease Summary: Interface with datasets conforming to BIDS # The entire source is MIT, except: # - The Versioneer-generated bids/_version.py 0.28, is Unlicense. (It simply # says “This file is released into the public domain,” but the full # Versioneer documentation makes it clear that it is actually under the # same Unlicense terms as Versioneer (Fedora: python-versioneer) itself. # https://github.com/python-versioneer/python-versioneer/tree/0.28#license) # - We presume other test datasets (bids/tests/data/*/) are under the overall # MIT license, unless evidence to the contrary comes to light. # # In the python3-pybids+test subpackage: # # - The following test datasets (content) are PDDL-1.0: # bids/tests/data/ds005/ # bids/tests/data/ds005_conflict/ # # We refrain from including the bids-examples/ submodule # (https://github.com/bids-standard/bids-examples/) because many of the # datasets therein have unspecified licenses. A small number of tests are # skipped as a result. License: MIT AND Unlicense URL: https://bids.neuroimaging.io Source0: https://github.com/bids-standard/pybids/archive/%{version}/pybids-%{version}.tar.gz BuildArch: noarch # tests fail on 32 bit systems, plus: # https://fedoraproject.org/wiki/Changes/EncourageI686LeafRemoval ExcludeArch: %{ix86} BuildRequires: hardlink %global _description %{expand: PyBIDS is a Python library to centralize interactions with datasets conforming BIDS (Brain Imaging Data Structure) format. For more information about BIDS visit https://bids.neuroimaging.io.} %description %{_description} # We cannot package the “model_reports” extra because python-altair is not # packaged. %pyproject_extras_subpkg -n python3-pybids plotting %package -n python3-pybids Summary: Interface with datasets conforming to BIDS BuildRequires: python3-devel Obsoletes: python-pybids-doc < 0.15.5-13 # unbundled BuildRequires: %{py3_dist inflect} Requires: %{py3_dist inflect} %description -n python3-pybids %{_description} %package -n python3-pybids+test %global test_summary Tests and test extras for PyBIDS Summary: %{test_summary} # See comment above base package License tag for licensing breakdown. # # The CC0-1.0 file _version.py does not appear in this subpackage. License: MIT AND PDDL-1.0 Requires: python3-pybids = %{version}-%{release} %global test_description %{expand: \ These are the tests for python3-pybids. This package: • Provides the “bids.tests” package • Makes sure the “test” extra dependencies are installed} %description -n python3-pybids+test %{test_description} # Upstream duplicates all extras with singular and plural names. # Based loosely on: rpm -E '%%pyproject_extras_subpkg -n python3-pybids tests' %package -n python3-pybids+tests Summary: %{test_summary} # This has no files of its own, so none of the non-MIT licenses apply. License: MIT # This metapackage is basically an alias for python3-pybids+test. We build it # as a separate subpackage rather than adding a virtual Provides so that we can # benefit from generators to add Provides like python3dist(pybids[tests]). Requires: python3-pybids+test = %{version}-%{release} %description -n python3-pybids+tests %{test_description} %prep %autosetup -n pybids-%{version} # loosen formulaic dep: one test fails, reported upstream # https://github.com/bids-standard/pybids/issues/1000 sed -i 's/formulaic .*"/formulaic <0.7"/' pyproject.toml # Remove bundled inflect rm -rf bids/external sed -r -i.backup 's/from.*external (import)/\1/' bids/layout/layout.py # https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/#_linters sed -r -i 's/^([[:blank:]]*)"(pytest-cov|coverage)\b/\1# "\2/' pyproject.toml # Not currently packaged: python-altair. This patches it out of *all* extras, # currently “test” and “model_reports”, but we neither package nor generate # BR’s from “model_reports” since we do not have altair. sed -r -i 's/^([[:blank:]]*)"(altair)\b/\1# "\2/' pyproject.toml # Remove bogus executable bits for non-script files find bids doc -type f -perm /0111 -execdir chmod -v a-x '{}' '+' %generate_buildrequires %pyproject_buildrequires -x test,plotting %build %pyproject_wheel %install %pyproject_install %pyproject_save_files bids # Save space by hardlinking duplicate test data files (of nonzero size). hardlink -c -v '%{buildroot}%{python3_sitelib}/bids/tests/data/' %check %if %{with tests} # temporarily disable failing tests # https://github.com/bids-standard/pybids/issues/1012 # https://github.com/bids-standard/pybids/issues/1000 %pytest -v -k "not test_run_variable_collection_bad_length_to_df_all_dense_vars and not test_split" %else %pyproject_check_import %endif %files -n python3-pybids -f %{pyproject_files} %doc README.md %{_bindir}/pybids %exclude %{python3_sitelib}/bids/tests/ %files -n python3-pybids+test %{python3_sitelib}/bids/tests/ %ghost %{python3_sitelib}/*.dist-info %files -n python3-pybids+tests %ghost %{python3_sitelib}/*.dist-info %changelog * Sat Dec 02 2023 Packit - 0.16.4-1 - [packit] 0.16.4 upstream release - Resolves rhbz#2252503 * Tue Sep 05 2023 Ankur Sinha (Ankur Sinha Gmail) - 0.16.3-3 - fix: bump formulaic version req and temporarily disable one failing test * Tue Sep 05 2023 Ankur Sinha (Ankur Sinha Gmail) - 0.16.3-2 - fix: temporarily disable failing test (fixes rhbz#2226542, rhbz#2220422) * Tue Sep 05 2023 Ankur Sinha (Ankur Sinha Gmail) - 0.16.3-1 - feat: update to 0.16.3 (fixes rhbz#2232259) * Tue Sep 05 2023 Ankur Sinha (Ankur Sinha Gmail) - 0.16.1-4 - chore: add packit * Fri Jul 21 2023 Fedora Release Engineering - 0.16.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Tue May 30 2023 Benjamin A. Beasley - 0.16.1-2 - Enable tests that require python-bsmschema * Thu May 04 2023 Benjamin A. Beasley - 0.16.1-1 - Update to 0.16.1 (close RHBZ#2174248) * Thu May 04 2023 Benjamin A. Beasley - 0.16.0-1 - Update to 0.16.0 * Thu May 04 2023 Benjamin A. Beasley - 0.15.6-3 - Revert "Run tests in parallel" * Mon May 01 2023 Benjamin A. Beasley - 0.15.6-2 - Save space by hardlinking duplicate test data files * Sun Apr 30 2023 Benjamin A. Beasley - 0.15.6-1 - Update to 0.15.6 * Sun Apr 30 2023 Benjamin A. Beasley - 0.15.5-17 - Backport SQLAlchemy 1.4 support from 0.16.0 * Sun Apr 30 2023 Benjamin A. Beasley - 0.15.5-16 - Split tests into a subpackage * Sun Apr 30 2023 Benjamin A. Beasley - 0.15.5-15 - Update License to SPDX * Sun Apr 30 2023 Benjamin A. Beasley - 0.15.5-14 - Remove bogus executable bits for non-script files * Sun Apr 30 2023 Benjamin A. Beasley - 0.15.5-13 - Simplify inflect unbundling * Sun Apr 30 2023 Benjamin A. Beasley - 0.15.5-12 - Stop using or packaging the bids-examples submodule * Sun Apr 30 2023 Benjamin A. Beasley - 0.15.5-11 - Run tests in parallel * Sun Apr 30 2023 Benjamin A. Beasley - 0.15.5-10 - Add plotting extra metapackage * Sun Apr 30 2023 Benjamin A. Beasley - 0.15.5-9 - Reference Changes/EncourageI686LeafRemoval * Sun Apr 30 2023 Benjamin A. Beasley - 0.15.5-8 - Update description from upstream * Sun Apr 30 2023 Benjamin A. Beasley - 0.15.5-7 - Use two lines between spec file sections * Sun Apr 30 2023 Benjamin A. Beasley - 0.15.5-6 - Fix the description in the -doc subpackage * Sun Apr 30 2023 Benjamin A. Beasley - 0.15.5-5 - Use generated BR’s for tests * Fri Apr 28 2023 Benjamin A. Beasley - 0.15.5-4 - Reference examples submodule by commit * Fri Jan 20 2023 Fedora Release Engineering - 0.15.5-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Thu Nov 10 2022 Ankur Sinha (Ankur Sinha Gmail) - 0.15.5-2 - chore: drop i686 support (tests fail) * Thu Nov 10 2022 Ankur Sinha (Ankur Sinha Gmail) - 0.15.5-1 - feat: update to 0.15.5 (fix rhbz#1996270, fix rhbz#2113646) - drops doc generation - enables all tests by default - updates to use pyproject rpm macros * Fri Jul 22 2022 Fedora Release Engineering - 0.13.1-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Mon Jul 11 2022 Benjamin A. Beasley - 0.13.1-5 - Fix extra newline in description - Drop unnecessary python_enable_dependency_generator macro - Switch URL to HTTPS * Fri Jan 21 2022 Fedora Release Engineering - 0.13.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Fri Jul 23 2021 Fedora Release Engineering - 0.13.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Fri Jun 04 2021 Python Maint - 0.13.1-2 - Rebuilt for Python 3.10 * Sat May 22 2021 Ankur Sinha - 0.13.1-1 - Update to latest release * Wed Jan 27 2021 Fedora Release Engineering - 0.12.4-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Sat Nov 28 2020 Ankur Sinha - 0.12.4-1 - Update to 0.12.4 * Sun Sep 13 2020 Ankur Sinha - 0.12.1-1 - Update to new release * Fri Sep 04 2020 Ankur Sinha - 0.12.0-1 - Update to 0.12.0 * Wed Jul 29 2020 Fedora Release Engineering - 0.10.2-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Tue May 26 2020 Miro Hrončok - 0.10.2-2 - Rebuilt for Python 3.9 * Tue Apr 21 2020 Ankur Sinha - 0.10.2-1 - Update to 0.10.2 * Thu Jan 30 2020 Fedora Release Engineering - 0.10.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Thu Dec 12 2019 Aniket Pradhan - 0.10.0-1 - Bumped to v0.10.0 * Tue Oct 1 2019 Aniket Pradhan - 0.9.4-1 - Bumped to v0.9.4 * Thu Aug 22 2019 Aniket Pradhan - 0.9.3-1 - Bumped to v0.9.3 * Mon Aug 19 2019 Miro Hrončok - 0.9.1-3 - Rebuilt for Python 3.8 * Fri Jul 26 2019 Fedora Release Engineering - 0.9.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Mon May 27 2019 Ankur Sinha - 0.9.1-1 - Update to 0.9.1 * Mon Apr 08 2019 Ankur Sinha - 0.8.0-1 - Update the latest release - Drop dropped grabbit dep - Add new BR: python-bids-validator: requires review: 1697498 - Unbundle new bundled libs * Sat Feb 02 2019 Fedora Release Engineering - 0.6.5-3.gite35ced6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Mon Nov 12 2018 Ankur Sinha - 0.6.5-2.gite35ced6 - Use bconds * Wed Nov 07 2018 Ankur Sinha - 0.6.5-1.gite35ced6 - Use latest git snapshot that fixes tests - Add documentation and examples in subpackage * Wed Nov 07 2018 Ankur Sinha - 0.6.3-2 - Enable tests now that duecredit is available in rawhide - Disable py2 build since python-nibabel is only py3 even in F29 * Fri Jul 20 2018 Ankur Sinha - 0.6.3-1 - Update to latest release - Use py.test - Disable tests until nibabel is fixed * Mon Jan 15 2018 Ankur Sinha - 0.4.2-2 - Use github source for license and test suite - Fix requires and build requires * Fri Jan 12 2018 Ankur Sinha - 0.4.2-1 - Initial build