Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c10e' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8390551-fedora-41-x86_64 --chroot fedora-41-x86_64 Version: 1.2 PID: 9916 Logging PID: 9917 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8390551, 'buildroot_pkgs': [], 'chroot': 'fedora-41-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '006acc14b3997bd5e2683cc1c4816f9e631287c7', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.8.3:pr:8/python-dipy', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-dipy', 'package_version': '1.10.0-4', 'project_dirname': 'scipy-1.8.3:pr:8', 'project_name': 'scipy-1.8.3', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/scipy-1.8.3/fedora-41-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/scipy-1.8.3--https://src.fedoraproject.org/user/packit', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'https://src.fedoraproject.org/user/packit', 'tags': [], 'task_id': '8390551-fedora-41-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.8.3:pr:8/python-dipy /var/lib/copr-rpmbuild/workspace/workdir-3hsmtkai/python-dipy --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.8.3:pr:8/python-dipy', '/var/lib/copr-rpmbuild/workspace/workdir-3hsmtkai/python-dipy', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-3hsmtkai/python-dipy'... Running: git checkout 006acc14b3997bd5e2683cc1c4816f9e631287c7 -- cmd: ['git', 'checkout', '006acc14b3997bd5e2683cc1c4816f9e631287c7', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-3hsmtkai/python-dipy rc: 0 stdout: stderr: Note: switching to '006acc14b3997bd5e2683cc1c4816f9e631287c7'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 006acc1 automatic import of python-dipy Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-3hsmtkai/python-dipy rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading dipy-1.10.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o dipy-1.10.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/scipy-1.8.3:pr:8/python-dipy/dipy-1.10.0.tar.gz/md5/00264dda75c29f0360e4fbd4d29f7e82/dipy-1.10.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 6573k 100 6573k 0 0 765k 0 0:00:08 0:00:08 --:--:-- 1225k INFO: Reading stdout from command: md5sum dipy-1.10.0.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-3hsmtkai/python-dipy/python-dipy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-3hsmtkai/python-dipy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734111368.427546 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.9 starting (python version = 3.13.0, NVR = mock-5.9-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-3hsmtkai/python-dipy/python-dipy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-3hsmtkai/python-dipy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734111368.427546 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-3hsmtkai/python-dipy/python-dipy.spec) Config(fedora-41-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.9 INFO: Mock Version: 5.9 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1734111368.427546/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:41 INFO: Pulling image: registry.fedoraproject.org/fedora:41 INFO: Copy content of container registry.fedoraproject.org/fedora:41 to /var/lib/mock/fedora-41-x86_64-bootstrap-1734111368.427546/root INFO: Checking that registry.fedoraproject.org/fedora:41 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:41 with podman image mount INFO: image registry.fedoraproject.org/fedora:41 as /var/lib/containers/storage/overlay/46c4d1a95f0fd36b57a5bca68f7866ffa095dec83991c84450958e6d9d18e91e/merged INFO: umounting image registry.fedoraproject.org/fedora:41 (/var/lib/containers/storage/overlay/46c4d1a95f0fd36b57a5bca68f7866ffa095dec83991c84450958e6d9d18e91e/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1734111368.427546/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-3.fc41.x86_64 dnf5-5.2.8.1-2.fc41.x86_64 dnf5-plugins-5.2.8.1-2.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 4.3 MiB/s | 6.4 MiB | 00m01s fedora 100% | 1.9 MiB/s | 35.4 MiB | 00m19s Copr repository 100% | 2.2 MiB/s | 392.2 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 7.2 MiB/s | 14.3 MiB | 00m02s Repositories loaded. 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145.5 KiB mpfr x86_64 4.2.1-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 832.1 KiB ncurses-base noarch 6.5-2.20240629.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.3 KiB ncurses-libs x86_64 6.5-2.20240629.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 975.2 KiB ocaml-srpm-macros noarch 10-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B openldap x86_64 2.6.8-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 647.4 KiB openssl-libs x86_64 1:3.2.2-9.fc41 fedora 7.8 MiB p11-kit x86_64 0.25.5-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB p11-kit-trust x86_64 0.25.5-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 403.8 KiB package-notes-srpm-macros noarch 0.5-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam x86_64 1.7.0-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB pam-libs x86_64 1.7.0-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 139.4 KiB pcre2 x86_64 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-56.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf x86_64 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 989.0 B popt x86_64 1.19-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.16.3-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.8.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline x86_64 8.2-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 493.1 KiB rpm x86_64 4.20.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.1 MiB rpm-build-libs x86_64 4.20.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 206.7 KiB rpm-libs x86_64 4.20.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 726.1 KiB rpm-sequoia x86_64 1.7.0-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB rust-srpm-macros noarch 26.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs x86_64 3.47.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB systemd-libs x86_64 257-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB util-linux-core x86_64 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB xxhash-libs x86_64 0.8.2-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.4 KiB xz-libs x86_64 1:5.6.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 218.4 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip x86_64 3.0-42.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 695.9 KiB zlib-ng-compat x86_64 2.2.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134.0 KiB zstd x86_64 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 154 packages Total size of inbound packages is 51 MiB. Need to download 51 MiB. After this operation, 178 MiB extra will be used (install 178 MiB, remove 0 B). [ 1/154] bzip2-0:1.0.8-19.fc41.x86_64 100% | 783.9 KiB/s | 52.5 KiB | 00m00s [ 2/154] cpio-0:2.15-2.fc41.x86_64 100% | 5.6 MiB/s | 285.2 KiB | 00m00s [ 3/154] diffutils-0:3.10-8.fc41.x86_6 100% | 5.9 MiB/s | 397.2 KiB | 00m00s [ 4/154] fedora-release-common-0:42-0. 100% | 1.1 MiB/s | 23.9 KiB | 00m00s [ 5/154] findutils-1:4.10.0-4.fc41.x86 100% | 6.6 MiB/s | 539.8 KiB | 00m00s [ 6/154] coreutils-0:9.5-11.fc42.x86_6 100% | 3.1 MiB/s | 1.1 MiB | 00m00s [ 7/154] glibc-minimal-langpack-0:2.40 100% | 3.5 MiB/s | 118.0 KiB | 00m00s [ 8/154] grep-0:3.11-9.fc41.x86_64 100% | 5.7 MiB/s | 289.7 KiB | 00m00s [ 9/154] gzip-0:1.13-2.fc41.x86_64 100% | 3.8 MiB/s | 164.1 KiB | 00m00s [ 10/154] info-0:7.1.1-2.fc42.x86_64 100% | 4.4 MiB/s | 183.2 KiB | 00m00s [ 11/154] patch-0:2.7.6-25.fc41.x86_64 100% | 3.9 MiB/s | 131.0 KiB | 00m00s [ 12/154] redhat-rpm-config-0:296-1.fc4 100% | 3.0 MiB/s | 75.7 KiB | 00m00s [ 13/154] gawk-0:5.3.0-4.fc41.x86_64 100% | 3.6 MiB/s | 1.1 MiB | 00m00s [ 14/154] rpm-build-0:4.20.0-1.fc42.x86 100% | 3.1 MiB/s | 75.2 KiB | 00m00s [ 15/154] sed-0:4.9-3.fc41.x86_64 100% | 5.3 MiB/s | 309.3 KiB | 00m00s [ 16/154] bash-0:5.2.37-1.fc42.x86_64 100% | 2.5 MiB/s | 1.8 MiB | 00m01s [ 17/154] unzip-0:6.0-65.fc42.x86_64 100% | 4.5 MiB/s | 184.5 KiB | 00m00s [ 18/154] shadow-utils-2:4.17.0~rc1-1.f 100% | 2.7 MiB/s | 1.2 MiB | 00m00s [ 19/154] util-linux-0:2.40.2-8.fc42.x8 100% | 3.7 MiB/s | 1.1 MiB | 00m00s [ 20/154] which-0:2.21-42.fc41.x86_64 100% | 2.4 MiB/s | 41.6 KiB | 00m00s [ 21/154] tar-2:1.35-4.fc41.x86_64 100% | 1.7 MiB/s | 852.1 KiB | 00m00s [ 22/154] fedora-repos-0:42-0.3.noarch 100% | 574.5 KiB/s | 9.2 KiB | 00m00s [ 23/154] xz-1:5.6.3-2.fc42.x86_64 100% | 6.0 MiB/s | 461.7 KiB | 00m00s [ 24/154] glibc-common-0:2.40.9000-22.f 100% | 5.9 MiB/s | 386.9 KiB | 00m00s [ 25/154] rpm-0:4.20.0-1.fc42.x86_64 100% | 6.9 MiB/s | 519.3 KiB | 00m00s [ 26/154] libblkid-0:2.40.2-8.fc42.x86_ 100% | 3.7 MiB/s | 125.0 KiB | 00m00s [ 27/154] libfdisk-0:2.40.2-8.fc42.x86_ 100% | 3.8 MiB/s | 159.6 KiB | 00m00s [ 28/154] libmount-0:2.40.2-8.fc42.x86_ 100% | 3.7 MiB/s | 156.1 KiB | 00m00s [ 29/154] libsmartcols-0:2.40.2-8.fc42. 100% | 2.5 MiB/s | 83.9 KiB | 00m00s [ 30/154] libuuid-0:2.40.2-8.fc42.x86_6 100% | 1.7 MiB/s | 29.0 KiB | 00m00s [ 31/154] util-linux-core-0:2.40.2-8.fc 100% | 5.4 MiB/s | 521.5 KiB | 00m00s [ 32/154] xz-libs-1:5.6.3-2.fc42.x86_64 100% | 3.4 MiB/s | 111.9 KiB | 00m00s [ 33/154] fedora-gpg-keys-0:42-0.3.noar 100% | 3.7 MiB/s | 123.4 KiB | 00m00s [ 34/154] fedora-repos-rawhide-0:42-0.3 100% | 547.7 KiB/s | 8.8 KiB | 00m00s [ 35/154] glibc-0:2.40.9000-22.fc42.x86 100% | 2.9 MiB/s | 2.2 MiB | 00m01s [ 36/154] rpm-libs-0:4.20.0-1.fc42.x86_ 100% | 6.0 MiB/s | 309.5 KiB | 00m00s [ 37/154] rpm-build-libs-0:4.20.0-1.fc4 100% | 3.9 MiB/s | 98.7 KiB | 00m00s [ 38/154] libxcrypt-0:4.4.36-11.fc42.x8 100% | 3.5 MiB/s | 118.1 KiB | 00m00s [ 39/154] coreutils-common-0:9.5-11.fc4 100% | 2.2 MiB/s | 2.1 MiB | 00m01s [ 40/154] libselinux-0:3.8-0.rc1.2.fc42 100% | 3.4 MiB/s | 90.7 KiB | 00m00s [ 41/154] libsepol-0:3.8-0.rc1.1.fc42.x 100% | 6.6 MiB/s | 345.7 KiB | 00m00s [ 42/154] ncurses-libs-0:6.5-2.20240629 100% | 6.5 MiB/s | 334.0 KiB | 00m00s [ 43/154] pam-0:1.7.0-3.fc42.x86_64 100% | 6.1 MiB/s | 517.9 KiB | 00m00s [ 44/154] libeconf-0:0.7.5-1.fc42.x86_6 100% | 1.9 MiB/s | 33.1 KiB | 00m00s [ 45/154] systemd-libs-0:257-1.fc42.x86 100% | 2.9 MiB/s | 770.3 KiB | 00m00s [ 46/154] pam-libs-0:1.7.0-3.fc42.x86_6 100% | 2.3 MiB/s | 58.0 KiB | 00m00s [ 47/154] audit-libs-0:4.0.2-1.fc41.x86 100% | 3.7 MiB/s | 126.2 KiB | 00m00s [ 48/154] authselect-libs-0:1.5.0-8.fc4 100% | 4.9 MiB/s | 204.7 KiB | 00m00s [ 49/154] authselect-0:1.5.0-8.fc42.x86 100% | 4.2 MiB/s | 141.2 KiB | 00m00s [ 50/154] glibc-gconv-extra-0:2.40.9000 100% | 2.1 MiB/s | 1.5 MiB | 00m01s [ 51/154] libcap-ng-0:0.8.5-3.fc41.x86_ 100% | 1.9 MiB/s | 32.6 KiB | 00m00s [ 52/154] bzip2-libs-0:1.0.8-19.fc41.x8 100% | 2.4 MiB/s | 41.1 KiB | 00m00s [ 53/154] zlib-ng-compat-0:2.2.2-1.fc42 100% | 3.1 MiB/s | 76.9 KiB | 00m00s [ 54/154] readline-0:8.2-11.fc42.x86_64 100% | 4.4 MiB/s | 213.4 KiB | 00m00s [ 55/154] libcap-0:2.71-1.fc42.x86_64 100% | 3.4 MiB/s | 86.4 KiB | 00m00s [ 56/154] libgcc-0:14.2.1-6.fc42.x86_64 100% | 5.3 MiB/s | 135.2 KiB | 00m00s [ 57/154] libattr-0:2.5.2-4.fc41.x86_64 100% | 1.1 MiB/s | 18.2 KiB | 00m00s [ 58/154] libsemanage-0:3.8-0.rc1.1.fc4 100% | 3.3 MiB/s | 115.9 KiB | 00m00s [ 59/154] setup-0:2.15.0-5.fc41.noarch 100% | 4.0 MiB/s | 148.3 KiB | 00m00s [ 60/154] libzstd-0:1.5.6-2.fc41.x86_64 100% | 6.2 MiB/s | 310.3 KiB | 00m00s [ 61/154] lua-libs-0:5.4.7-1.fc42.x86_6 100% | 3.9 MiB/s | 132.1 KiB | 00m00s [ 62/154] popt-0:1.19-7.fc41.x86_64 100% | 2.4 MiB/s | 59.3 KiB | 00m00s [ 63/154] sqlite-libs-0:3.47.2-1.fc42.x 100% | 2.7 MiB/s | 699.8 KiB | 00m00s [ 64/154] elfutils-libelf-0:0.192-7.fc4 100% | 4.6 MiB/s | 204.6 KiB | 00m00s [ 65/154] elfutils-libs-0:0.192-7.fc42. 100% | 5.1 MiB/s | 251.9 KiB | 00m00s [ 66/154] rpm-sequoia-0:1.7.0-3.fc42.x8 100% | 1.7 MiB/s | 826.0 KiB | 00m00s [ 67/154] elfutils-debuginfod-client-0: 100% | 2.4 MiB/s | 43.9 KiB | 00m00s [ 68/154] elfutils-0:0.192-7.fc42.x86_6 100% | 5.9 MiB/s | 499.5 KiB | 00m00s [ 69/154] file-0:5.45-8.fc42.x86_64 100% | 1.9 MiB/s | 48.6 KiB | 00m00s [ 70/154] libgomp-0:14.2.1-6.fc42.x86_6 100% | 6.1 MiB/s | 356.9 KiB | 00m00s [ 71/154] file-libs-0:5.45-8.fc42.x86_6 100% | 3.2 MiB/s | 763.6 KiB | 00m00s [ 72/154] jansson-0:2.14-1.fc42.x86_64 100% | 2.6 MiB/s | 45.3 KiB | 00m00s [ 73/154] debugedit-0:5.1-2.fc42.x86_64 100% | 3.1 MiB/s | 78.2 KiB | 00m00s [ 74/154] libarchive-0:3.7.7-1.fc42.x86 100% | 6.2 MiB/s | 413.9 KiB | 00m00s [ 75/154] pkgconf-pkg-config-0:2.3.0-1. 100% | 588.9 KiB/s | 10.0 KiB | 00m00s [ 76/154] pkgconf-0:2.3.0-1.fc42.x86_64 100% | 2.6 MiB/s | 45.2 KiB | 00m00s [ 77/154] pkgconf-m4-0:2.3.0-1.fc42.noa 100% | 895.1 KiB/s | 14.3 KiB | 00m00s [ 78/154] libpkgconf-0:2.3.0-1.fc42.x86 100% | 2.2 MiB/s | 38.5 KiB | 00m00s [ 79/154] libacl-0:2.3.2-2.fc41.x86_64 100% | 23.5 KiB/s | 24.5 KiB | 00m01s [ 80/154] zstd-0:1.5.6-2.fc41.x86_64 100% | 5.7 MiB/s | 481.5 KiB | 00m00s [ 81/154] build-reproducibility-srpm-ma 100% | 657.6 KiB/s | 11.2 KiB | 00m00s [ 82/154] curl-0:8.11.1-1.fc42.x86_64 100% | 4.5 MiB/s | 219.8 KiB | 00m00s [ 83/154] efi-srpm-macros-0:5-13.fc42.n 100% | 1.3 MiB/s | 22.5 KiB | 00m00s [ 84/154] pyproject-srpm-macros-0:1.16. 100% | 866.6 KiB/s | 13.9 KiB | 00m00s [ 85/154] qt6-srpm-macros-0:6.8.1-4.fc4 100% | 579.2 KiB/s | 9.3 KiB | 00m00s [ 86/154] ansible-srpm-macros-0:1-16.fc 100% | 1.2 MiB/s | 20.8 KiB | 00m00s [ 87/154] dwz-0:0.15-8.fc42.x86_64 100% | 4.1 MiB/s | 139.1 KiB | 00m00s [ 88/154] fonts-srpm-macros-1:2.0.5-17. 100% | 1.5 MiB/s | 27.0 KiB | 00m00s [ 89/154] forge-srpm-macros-0:0.4.0-1.f 100% | 1.2 MiB/s | 19.8 KiB | 00m00s [ 90/154] fpc-srpm-macros-0:1.3-13.fc41 100% | 442.3 KiB/s | 8.0 KiB | 00m00s [ 91/154] ghc-srpm-macros-0:1.9.2-1.fc4 100% | 536.3 KiB/s | 9.1 KiB | 00m00s [ 92/154] gnat-srpm-macros-0:6-6.fc41.n 100% | 559.5 KiB/s | 9.0 KiB | 00m00s [ 93/154] go-srpm-macros-0:3.6.0-5.fc42 100% | 1.5 MiB/s | 28.0 KiB | 00m00s [ 94/154] kernel-srpm-macros-0:1.0-24.f 100% | 616.8 KiB/s | 9.9 KiB | 00m00s [ 95/154] add-determinism-0:0.4.3-1.fc4 100% | 3.6 MiB/s | 904.4 KiB | 00m00s [ 96/154] lua-srpm-macros-0:1-14.fc41.n 100% | 554.9 KiB/s | 8.9 KiB | 00m00s [ 97/154] ocaml-srpm-macros-0:10-3.fc41 100% | 541.1 KiB/s | 9.2 KiB | 00m00s [ 98/154] openblas-srpm-macros-0:2-18.f 100% | 482.2 KiB/s | 7.7 KiB | 00m00s [ 99/154] package-notes-srpm-macros-0:0 100% | 614.3 KiB/s | 9.8 KiB | 00m00s [100/154] perl-srpm-macros-0:1-56.fc41. 100% | 532.0 KiB/s | 8.5 KiB | 00m00s [101/154] python-srpm-macros-0:3.13-3.f 100% | 1.4 MiB/s | 23.7 KiB | 00m00s [102/154] qt5-srpm-macros-0:5.15.15-1.f 100% | 523.4 KiB/s | 8.9 KiB | 00m00s [103/154] rust-srpm-macros-0:26.3-3.fc4 100% | 756.2 KiB/s | 12.1 KiB | 00m00s [104/154] zig-srpm-macros-0:1-3.fc41.no 100% | 507.7 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890.1 KiB | 00m00s [131/154] binutils-0:2.43.50-9.fc42.x86 100% | 2.4 MiB/s | 5.8 MiB | 00m02s [132/154] ca-certificates-0:2024.2.69_v 100% | 3.3 MiB/s | 944.5 KiB | 00m00s [133/154] pcre2-syntax-0:10.44-1.fc41.1 100% | 3.6 MiB/s | 149.9 KiB | 00m00s [134/154] libffi-0:3.4.6-3.fc42.x86_64 100% | 2.2 MiB/s | 40.0 KiB | 00m00s [135/154] libtasn1-0:4.19.0-9.fc41.x86_ 100% | 2.9 MiB/s | 74.2 KiB | 00m00s [136/154] p11-kit-trust-0:0.25.5-4.fc42 100% | 3.9 MiB/s | 133.2 KiB | 00m00s [137/154] fedora-release-0:42-0.11.noar 100% | 763.6 KiB/s | 13.0 KiB | 00m00s [138/154] xxhash-libs-0:0.8.2-4.fc42.x8 100% | 2.1 MiB/s | 36.8 KiB | 00m00s [139/154] p11-kit-0:0.25.5-4.fc42.x86_6 100% | 6.3 MiB/s | 478.3 KiB | 00m00s [140/154] fedora-release-identity-basic 100% | 810.9 KiB/s | 13.8 KiB | 00m00s [141/154] libnghttp2-0:1.64.0-1.fc42.x8 100% | 2.9 MiB/s | 77.4 KiB | 00m00s [142/154] libcurl-0:8.11.1-1.fc42.x86_6 100% | 5.0 MiB/s | 356.5 KiB | 00m00s [143/154] libssh-config-0:0.11.1-1.fc42 100% | 552.1 KiB/s | 9.4 KiB | 00m00s [144/154] libssh-0:0.11.1-1.fc42.x86_64 100% | 4.2 MiB/s | 231.9 KiB | 00m00s [145/154] openldap-0:2.6.8-6.fc42.x86_6 100% | 4.9 MiB/s | 243.4 KiB | 00m00s [146/154] libbrotli-0:1.1.0-5.fc41.x86_ 100% | 5.5 MiB/s | 340.5 KiB | 00m00s [147/154] libidn2-0:2.3.7-2.fc41.x86_64 100% | 3.2 MiB/s | 112.6 KiB | 00m00s [148/154] libpsl-0:0.21.5-4.fc41.x86_64 100% | 2.5 MiB/s | 64.1 KiB | 00m00s [149/154] libevent-0:2.1.12-14.fc41.x86 100% | 5.1 MiB/s | 257.5 KiB | 00m00s [150/154] libtool-ltdl-0:2.5.4-1.fc42.x 100% | 1.8 MiB/s | 34.2 KiB | 00m00s [151/154] libunistring-0:1.1-8.fc41.x86 100% | 6.3 MiB/s | 544.8 KiB | 00m00s [152/154] publicsuffix-list-dafsa-0:202 100% | 2.4 MiB/s | 58.3 KiB | 00m00s [153/154] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 3.0 MiB/s | 794.9 KiB | 00m00s [154/154] gdb-minimal-0:15.2-4.fc42.x86 100% | 2.3 MiB/s | 4.0 MiB | 00m02s -------------------------------------------------------------------------------- [154/154] Total 100% | 7.1 MiB/s | 51.4 MiB | 00m07s Running transaction Importing OpenPGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. 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100% | 0.0 B/s | 5.6 KiB | 00m00s [103/156] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [104/156] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [105/156] Installing package-notes-srpm 100% | 2.0 MiB/s | 2.0 KiB | 00m00s [106/156] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [107/156] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [108/156] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [109/156] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [110/156] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [111/156] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [112/156] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [113/156] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [114/156] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [115/156] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [116/156] Installing coreutils-common-0 100% | 219.4 MiB/s | 11.2 MiB | 00m00s [117/156] Installing openssl-libs-1:3.2 100% | 301.1 MiB/s | 7.8 MiB | 00m00s [118/156] Installing coreutils-0:9.5-11 100% | 131.7 MiB/s | 5.4 MiB | 00m00s [119/156] Installing ca-certificates-0: 100% | 1.1 MiB/s | 2.4 MiB | 00m02s [120/156] Installing krb5-libs-0:1.21.3 100% | 144.1 MiB/s | 2.3 MiB | 00m00s [121/156] Installing libarchive-0:3.7.7 100% | 182.5 MiB/s | 934.2 KiB | 00m00s [122/156] Installing libtirpc-0:1.3.6-1 100% | 101.2 MiB/s | 207.3 KiB | 00m00s [123/156] Installing gzip-0:1.13-2.fc41 100% | 96.3 MiB/s | 394.6 KiB | 00m00s [124/156] Installing authselect-libs-0: 100% | 90.8 MiB/s | 837.2 KiB | 00m00s [125/156] Installing cracklib-0:2.9.11- 100% | 34.9 MiB/s | 250.3 KiB | 00m00s [126/156] Installing libpwquality-0:1.4 100% | 52.5 MiB/s | 430.1 KiB | 00m00s [127/156] Installing libnsl2-0:2.0.1-2. 100% | 57.7 MiB/s | 59.1 KiB | 00m00s [128/156] Installing pam-0:1.7.0-3.fc42 100% | 78.9 MiB/s | 1.9 MiB | 00m00s [129/156] Installing libssh-0:0.11.1-1. 100% | 186.1 MiB/s | 571.7 KiB | 00m00s [130/156] Installing rpm-sequoia-0:1.7. 100% | 258.2 MiB/s | 2.3 MiB | 00m00s [131/156] Installing rpm-libs-0:4.20.0- 100% | 236.9 MiB/s | 727.7 KiB | 00m00s [132/156] Installing rpm-build-libs-0:4 100% | 101.3 MiB/s | 207.5 KiB | 00m00s [133/156] Installing libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.5 KiB | 00m00s [134/156] Installing openldap-0:2.6.8-6 100% | 159.0 MiB/s | 651.2 KiB | 00m00s [135/156] Installing libcurl-0:8.11.1-1 100% | 199.8 MiB/s | 818.4 KiB | 00m00s [136/156] Installing elfutils-debuginfo 100% | 40.9 MiB/s | 83.8 KiB | 00m00s [137/156] Installing elfutils-0:0.192-7 100% | 240.4 MiB/s | 2.6 MiB | 00m00s [138/156] Installing binutils-0:2.43.50 100% | 268.8 MiB/s | 25.8 MiB | 00m00s [139/156] Installing gdb-minimal-0:15.2 100% | 295.9 MiB/s | 12.7 MiB | 00m00s [140/156] Installing debugedit-0:5.1-2. 100% | 99.1 MiB/s | 203.0 KiB | 00m00s [141/156] Installing curl-0:8.11.1-1.fc 100% | 20.2 MiB/s | 454.5 KiB | 00m00s [142/156] Installing rpm-0:4.20.0-1.fc4 100% | 78.3 MiB/s | 2.5 MiB | 00m00s [143/156] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [144/156] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [145/156] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [146/156] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [147/156] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [148/156] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [149/156] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [150/156] Installing redhat-rpm-config- 100% | 47.2 MiB/s | 193.2 KiB | 00m00s [151/156] Installing rpm-build-0:4.20.0 100% | 49.5 MiB/s | 202.9 KiB | 00m00s [152/156] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [153/156] Installing util-linux-0:2.40. 100% | 86.4 MiB/s | 3.7 MiB | 00m00s [154/156] Installing authselect-0:1.5.0 100% | 39.5 MiB/s | 161.9 KiB | 00m00s [155/156] Installing which-0:2.21-42.fc 100% | 40.2 MiB/s | 82.4 KiB | 00m00s [156/156] Installing info-0:7.1.1-2.fc4 100% | 126.9 KiB/s | 362.2 KiB | 00m03s Warning: skipped OpenPGP checks for 153 packages from repository: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.4.3-1.fc42.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.x86_64 authselect-1.5.0-8.fc42.x86_64 authselect-libs-1.5.0-8.fc42.x86_64 basesystem-11-21.fc41.noarch bash-5.2.37-1.fc42.x86_64 binutils-2.43.50-9.fc42.x86_64 build-reproducibility-srpm-macros-0.4.3-1.fc42.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.69_v8.0.401-3.fc42.noarch coreutils-9.5-11.fc42.x86_64 coreutils-common-9.5-11.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20241128-1.gitbb7b0b0.fc42.noarch curl-8.11.1-1.fc42.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.1-2.fc42.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-8.fc42.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-13.fc42.noarch elfutils-0.192-7.fc42.x86_64 elfutils-debuginfod-client-0.192-7.fc42.x86_64 elfutils-default-yama-scope-0.192-7.fc42.noarch elfutils-libelf-0.192-7.fc42.x86_64 elfutils-libs-0.192-7.fc42.x86_64 fedora-gpg-keys-42-0.3.noarch fedora-release-42-0.11.noarch fedora-release-common-42-0.11.noarch fedora-release-identity-basic-42-0.11.noarch fedora-repos-42-0.3.noarch fedora-repos-rawhide-42-0.3.noarch file-5.45-8.fc42.x86_64 file-libs-5.45-8.fc42.x86_64 filesystem-3.18-29.fc42.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc42.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.2-4.fc42.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-22.fc42.x86_64 glibc-common-2.40.9000-22.fc42.x86_64 glibc-gconv-extra-2.40.9000-22.fc42.x86_64 glibc-minimal-langpack-2.40.9000-22.fc42.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-5.fc42.noarch gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1.1-2.fc42.x86_64 jansson-2.14-1.fc42.x86_64 json-c-0.18-1.fc42.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-3.fc42.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.7-1.fc42.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-8.fc42.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.71-1.fc42.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-6.fc42.x86_64 libcurl-8.11.1-1.fc42.x86_64 libeconf-0.7.5-1.fc42.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-8.fc42.x86_64 libffi-3.4.6-3.fc42.x86_64 libgcc-14.2.1-6.fc42.x86_64 libgomp-14.2.1-6.fc42.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-8.fc42.x86_64 libnghttp2-1.64.0-1.fc42.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc42.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.8-0.rc1.2.fc42.x86_64 libsemanage-3.8-0.rc1.1.fc42.x86_64 libsepol-3.8-0.rc1.1.fc42.x86_64 libsmartcols-2.40.2-8.fc42.x86_64 libssh-0.11.1-1.fc42.x86_64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-6.fc42.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.6-1.fc42.x86_64 libtool-ltdl-2.5.4-1.fc42.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-11.fc42.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.7-1.fc42.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-6.fc42.x86_64 openssl-libs-3.2.2-9.fc41.x86_64 p11-kit-0.25.5-4.fc42.x86_64 p11-kit-trust-0.25.5-4.fc42.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.7.0-3.fc42.x86_64 pam-libs-1.7.0-3.fc42.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.16.3-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.1-4.fc42.noarch readline-8.2-11.fc42.x86_64 redhat-rpm-config-296-1.fc42.noarch rpm-4.20.0-1.fc42.x86_64 rpm-build-4.20.0-1.fc42.x86_64 rpm-build-libs-4.20.0-1.fc42.x86_64 rpm-libs-4.20.0-1.fc42.x86_64 rpm-sequoia-1.7.0-3.fc42.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.17.0~rc1-1.fc42.x86_64 sqlite-libs-3.47.2-1.fc42.x86_64 systemd-libs-257-1.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-65.fc42.x86_64 util-linux-2.40.2-8.fc42.x86_64 util-linux-core-2.40.2-8.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-4.fc42.x86_64 xz-5.6.3-2.fc42.x86_64 xz-libs-5.6.3-2.fc42.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-42.fc42.x86_64 zlib-ng-compat-2.2.2-1.fc42.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1733961600 Wrote: /builddir/build/SRPMS/python-dipy-1.10.0-4.fc42.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1734111368.427546/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-3hsmtkai/python-dipy/python-dipy.spec) Config(child) 0 minutes 57 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-dipy-1.10.0-4.fc42.src.rpm) Config(fedora-41-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1734111368.427546/root. INFO: reusing tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1734111368.427546/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1734111368.427546/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-3.fc41.x86_64 dnf5-5.2.8.1-2.fc41.x86_64 dnf5-plugins-5.2.8.1-2.fc41.x86_64 Finish: chroot init Start: build phase for python-dipy-1.10.0-4.fc42.src.rpm Start: build setup for python-dipy-1.10.0-4.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1733961600 Wrote: /builddir/build/SRPMS/python-dipy-1.10.0-4.fc42.src.rpm Updating and loading repositories: updates 100% | 1.1 MiB/s | 30.8 KiB | 00m00s fedora 100% | 1.2 MiB/s | 31.3 KiB | 00m00s Copr repository 100% | 31.2 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 72.2 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: gcc-c++ x86_64 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38.1 MiB python3-devel x86_64 3.13.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB python3-pytest noarch 8.3.4-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20.8 MiB Installing dependencies: annobin-docs noarch 12.79-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 98.6 KiB annobin-plugin-gcc x86_64 12.79-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 989.3 KiB cpp x86_64 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.0 MiB expat x86_64 2.6.4-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 285.5 KiB gcc x86_64 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 104.3 MiB gcc-plugin-annobin x86_64 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 57.6 KiB glibc-devel x86_64 2.40.9000-22.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB kernel-headers x86_64 6.13.0-0.rc1.e70140ba0d2b.14.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.5 MiB libb2 x86_64 0.98.1-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 42.2 KiB libmpc x86_64 1.3.1-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 164.7 KiB libstdc++-devel x86_64 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 15.4 MiB libxcrypt-devel x86_64 4.4.36-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30.5 KiB make x86_64 1:4.4.1-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB mpdecimal x86_64 2.5.1-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 204.9 KiB pyproject-rpm-macros noarch 1.16.3-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113.7 KiB python-pip-wheel noarch 24.3.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB python-rpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22.1 KiB python3 x86_64 3.13.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30.6 KiB python3-iniconfig noarch 1.1.1-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20.6 KiB python3-libs x86_64 3.13.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.8 MiB python3-packaging noarch 24.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 555.7 KiB python3-pluggy noarch 1.5.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 193.2 KiB python3-rpm-generators noarch 14-11.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.4 KiB tzdata noarch 2024b-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB Transaction Summary: Installing: 28 packages Total size of inbound packages is 83 MiB. Need to download 83 MiB. After this operation, 271 MiB extra will be used (install 271 MiB, remove 0 B). [ 1/28] python3-devel-0:3.13.1-2.fc42.x 100% | 3.2 MiB/s | 357.9 KiB | 00m00s [ 2/28] libstdc++-devel-0:14.2.1-6.fc42 100% | 2.5 MiB/s | 2.6 MiB | 00m01s [ 3/28] python3-0:3.13.1-2.fc42.x86_64 100% | 1.5 MiB/s | 26.9 KiB | 00m00s [ 4/28] python3-libs-0:3.13.1-2.fc42.x8 100% | 2.5 MiB/s | 8.6 MiB | 00m03s [ 5/28] gcc-c++-0:14.2.1-6.fc42.x86_64 100% | 2.6 MiB/s | 14.2 MiB | 00m06s [ 6/28] python3-pytest-0:8.3.4-1.fc42.n 100% | 2.6 MiB/s | 2.0 MiB | 00m01s [ 7/28] python3-iniconfig-0:1.1.1-23.fc 100% | 1.0 MiB/s | 18.1 KiB | 00m00s [ 8/28] python3-packaging-0:24.2-2.fc42 100% | 4.1 MiB/s | 143.6 KiB | 00m00s [ 9/28] python3-pluggy-0:1.5.0-1.fc41.n 100% | 2.0 MiB/s | 53.1 KiB | 00m00s [10/28] expat-0:2.6.4-1.fc42.x86_64 100% | 3.4 MiB/s | 114.5 KiB | 00m00s [11/28] libb2-0:0.98.1-12.fc41.x86_64 100% | 1.5 MiB/s | 25.7 KiB | 00m00s [12/28] mpdecimal-0:2.5.1-16.fc41.x86_6 100% | 2.7 MiB/s | 89.0 KiB | 00m00s [13/28] python-pip-wheel-0:24.3.1-1.fc4 100% | 6.8 MiB/s | 1.2 MiB | 00m00s [14/28] tzdata-0:2024b-1.fc42.noarch 100% | 6.2 MiB/s | 428.6 KiB | 00m00s [15/28] libmpc-0:1.3.1-6.fc41.x86_64 100% | 2.8 MiB/s | 71.1 KiB | 00m00s [16/28] glibc-devel-0:2.40.9000-22.fc42 100% | 6.6 MiB/s | 563.9 KiB | 00m00s [17/28] make-1:4.4.1-9.fc42.x86_64 100% | 6.1 MiB/s | 579.3 KiB | 00m00s [18/28] libxcrypt-devel-0:4.4.36-11.fc4 100% | 1.6 MiB/s | 28.2 KiB | 00m00s [19/28] kernel-headers-0:6.13.0-0.rc1.e 100% | 7.3 MiB/s | 1.5 MiB | 00m00s [20/28] gcc-plugin-annobin-0:14.2.1-6.f 100% | 2.1 MiB/s | 57.1 KiB | 00m00s [21/28] pyproject-rpm-macros-0:1.16.3-1 100% | 2.4 MiB/s | 44.6 KiB | 00m00s [22/28] python-rpm-macros-0:3.13-3.fc41 100% | 1.0 MiB/s | 17.7 KiB | 00m00s [23/28] python3-rpm-generators-0:14-11. 100% | 1.6 MiB/s | 29.3 KiB | 00m00s [24/28] python3-rpm-macros-0:3.13-3.fc4 100% | 777.7 KiB/s | 12.4 KiB | 00m00s [25/28] cpp-0:14.2.1-6.fc42.x86_64 100% | 4.4 MiB/s | 11.9 MiB | 00m03s [26/28] annobin-plugin-gcc-0:12.79-1.fc 100% | 6.4 MiB/s | 975.8 KiB | 00m00s [27/28] annobin-docs-0:12.79-1.fc42.noa 100% | 2.7 MiB/s | 92.7 KiB | 00m00s [28/28] gcc-0:14.2.1-6.fc42.x86_64 100% | 4.1 MiB/s | 36.9 MiB | 00m09s -------------------------------------------------------------------------------- [28/28] Total 100% | 9.2 MiB/s | 82.6 MiB | 00m09s Running transaction [ 1/30] Verify package files 100% | 106.0 B/s | 28.0 B | 00m00s [ 2/30] Prepare transaction 100% | 405.0 B/s | 28.0 B | 00m00s [ 3/30] Installing python-rpm-macros-0: 100% | 22.3 MiB/s | 22.8 KiB | 00m00s [ 4/30] Installing libmpc-0:1.3.1-6.fc4 100% | 81.1 MiB/s | 166.2 KiB | 00m00s [ 5/30] Installing python3-rpm-macros-0 100% | 0.0 B/s | 6.7 KiB | 00m00s [ 6/30] Installing pyproject-rpm-macros 100% | 56.5 MiB/s | 115.7 KiB | 00m00s [ 7/30] Installing cpp-0:14.2.1-6.fc42. 100% | 286.7 MiB/s | 35.0 MiB | 00m00s [ 8/30] Installing annobin-docs-0:12.79 100% | 48.7 MiB/s | 99.7 KiB | 00m00s [ 9/30] Installing kernel-headers-0:6.1 100% | 114.6 MiB/s | 6.6 MiB | 00m00s [10/30] Installing libxcrypt-devel-0:4. 100% | 10.7 MiB/s | 32.9 KiB | 00m00s [11/30] Installing glibc-devel-0:2.40.9 100% | 89.6 MiB/s | 2.3 MiB | 00m00s [12/30] Installing make-1:4.4.1-9.fc42. 100% | 180.0 MiB/s | 1.8 MiB | 00m00s [13/30] Installing gcc-0:14.2.1-6.fc42. 100% | 307.7 MiB/s | 104.3 MiB | 00m00s [14/30] Installing tzdata-0:2024b-1.fc4 100% | 25.8 MiB/s | 1.9 MiB | 00m00s [15/30] Installing python-pip-wheel-0:2 100% | 414.7 MiB/s | 1.2 MiB | 00m00s [16/30] Installing mpdecimal-0:2.5.1-16 100% | 100.6 MiB/s | 206.0 KiB | 00m00s [17/30] Installing libb2-0:0.98.1-12.fc 100% | 42.3 MiB/s | 43.3 KiB | 00m00s [18/30] Installing expat-0:2.6.4-1.fc42 100% | 56.2 MiB/s | 287.6 KiB | 00m00s [19/30] Installing python3-libs-0:3.13. 100% | 202.1 MiB/s | 40.2 MiB | 00m00s [20/30] Installing python3-0:3.13.1-2.f 100% | 15.8 MiB/s | 32.4 KiB | 00m00s [21/30] Installing python3-packaging-0: 100% | 110.9 MiB/s | 568.0 KiB | 00m00s [22/30] Installing python3-rpm-generato 100% | 81.0 MiB/s | 82.9 KiB | 00m00s [23/30] Installing python3-iniconfig-0: 100% | 23.0 MiB/s | 23.6 KiB | 00m00s [24/30] Installing python3-pluggy-0:1.5 100% | 48.7 MiB/s | 199.4 KiB | 00m00s [25/30] Installing libstdc++-devel-0:14 100% | 213.1 MiB/s | 15.6 MiB | 00m00s [26/30] Installing gcc-c++-0:14.2.1-6.f 100% | 302.6 MiB/s | 38.1 MiB | 00m00s [27/30] Installing python3-pytest-0:8.3 100% | 262.6 MiB/s | 21.0 MiB | 00m00s [28/30] Installing python3-devel-0:3.13 100% | 106.8 MiB/s | 1.8 MiB | 00m00s [29/30] Installing gcc-plugin-annobin-0 100% | 2.3 MiB/s | 59.2 KiB | 00m00s [30/30] Installing annobin-plugin-gcc-0 100% | 5.0 MiB/s | 990.9 KiB | 00m00s Warning: skipped OpenPGP checks for 28 packages from repository: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Finish: build setup for python-dipy-1.10.0-4.fc42.src.rpm Start: rpmbuild python-dipy-1.10.0-4.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1733961600 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.OKIxRO + umask 022 + cd /builddir/build/BUILD/python-dipy-1.10.0-build + test -d /builddir/build/BUILD/python-dipy-1.10.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-dipy-1.10.0-build + /usr/bin/rm -rf /builddir/build/BUILD/python-dipy-1.10.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-dipy-1.10.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-dipy-1.10.0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.DXfiVm + umask 022 + cd /builddir/build/BUILD/python-dipy-1.10.0-build + cd /builddir/build/BUILD/python-dipy-1.10.0-build + rm -rf dipy-1.10.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/dipy-1.10.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd dipy-1.10.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + sed -i 's/#!\/usr\/bin\/env python[0-9]?/#!\/usr\/bin\/python3/' doc/tools/docgen_cmd.py + sed -i 's/#!\/usr\/bin\/env python[0-9]?/#!\/usr\/bin\/python3/' doc/tools/build_modref_templates.py + find tools/ -name '*.py' -exec sed -i 's/#!\/usr\/bin\/env python[0-9]?/#!\/usr\/bin\/python3/' '{}' ';' + for f in "dipy/stats/resampling.py" "dipy/reconst/dki.py" "dipy/reconst/dti.py" "dipy/workflows/mask.py" "dipy/workflows/tracking.py" "dipy/reconst/dki_micro.py" "dipy/reconst/msdki.py" "dipy/workflows/tests/test_stats.py" + chmod -x dipy/stats/resampling.py + sed -i '/^#!\/usr\/bin\/env python/ d' dipy/stats/resampling.py + sed -i '/^#!\/usr\/bin\/python/ d' dipy/stats/resampling.py + for f in "dipy/stats/resampling.py" "dipy/reconst/dki.py" "dipy/reconst/dti.py" "dipy/workflows/mask.py" "dipy/workflows/tracking.py" "dipy/reconst/dki_micro.py" "dipy/reconst/msdki.py" "dipy/workflows/tests/test_stats.py" + chmod -x dipy/reconst/dki.py + sed -i '/^#!\/usr\/bin\/env python/ d' dipy/reconst/dki.py + sed -i '/^#!\/usr\/bin\/python/ d' dipy/reconst/dki.py + for f in "dipy/stats/resampling.py" "dipy/reconst/dki.py" "dipy/reconst/dti.py" "dipy/workflows/mask.py" "dipy/workflows/tracking.py" "dipy/reconst/dki_micro.py" "dipy/reconst/msdki.py" "dipy/workflows/tests/test_stats.py" + chmod -x dipy/reconst/dti.py + sed -i '/^#!\/usr\/bin\/env python/ d' dipy/reconst/dti.py + sed -i '/^#!\/usr\/bin\/python/ d' dipy/reconst/dti.py + for f in "dipy/stats/resampling.py" "dipy/reconst/dki.py" "dipy/reconst/dti.py" "dipy/workflows/mask.py" "dipy/workflows/tracking.py" "dipy/reconst/dki_micro.py" "dipy/reconst/msdki.py" "dipy/workflows/tests/test_stats.py" + chmod -x dipy/workflows/mask.py + sed -i '/^#!\/usr\/bin\/env python/ d' dipy/workflows/mask.py + sed -i '/^#!\/usr\/bin\/python/ d' dipy/workflows/mask.py + for f in "dipy/stats/resampling.py" "dipy/reconst/dki.py" "dipy/reconst/dti.py" "dipy/workflows/mask.py" "dipy/workflows/tracking.py" "dipy/reconst/dki_micro.py" "dipy/reconst/msdki.py" "dipy/workflows/tests/test_stats.py" + chmod -x dipy/workflows/tracking.py + sed -i '/^#!\/usr\/bin\/env python/ d' dipy/workflows/tracking.py + sed -i '/^#!\/usr\/bin\/python/ d' dipy/workflows/tracking.py + for f in "dipy/stats/resampling.py" "dipy/reconst/dki.py" "dipy/reconst/dti.py" "dipy/workflows/mask.py" "dipy/workflows/tracking.py" "dipy/reconst/dki_micro.py" "dipy/reconst/msdki.py" "dipy/workflows/tests/test_stats.py" + chmod -x dipy/reconst/dki_micro.py + sed -i '/^#!\/usr\/bin\/env python/ d' dipy/reconst/dki_micro.py + sed -i '/^#!\/usr\/bin\/python/ d' dipy/reconst/dki_micro.py + for f in "dipy/stats/resampling.py" "dipy/reconst/dki.py" "dipy/reconst/dti.py" "dipy/workflows/mask.py" "dipy/workflows/tracking.py" "dipy/reconst/dki_micro.py" "dipy/reconst/msdki.py" "dipy/workflows/tests/test_stats.py" + chmod -x dipy/reconst/msdki.py + sed -i '/^#!\/usr\/bin\/env python/ d' dipy/reconst/msdki.py + sed -i '/^#!\/usr\/bin\/python/ d' dipy/reconst/msdki.py + for f in "dipy/stats/resampling.py" "dipy/reconst/dki.py" "dipy/reconst/dti.py" "dipy/workflows/mask.py" "dipy/workflows/tracking.py" "dipy/reconst/dki_micro.py" "dipy/reconst/msdki.py" "dipy/workflows/tests/test_stats.py" + chmod -x dipy/workflows/tests/test_stats.py + sed -i '/^#!\/usr\/bin\/env python/ d' dipy/workflows/tests/test_stats.py + sed -i '/^#!\/usr\/bin\/python/ d' dipy/workflows/tests/test_stats.py + chmod a-x doc/examples/affine_registration_3d.py doc/examples/affine_registration_masks.py doc/examples/afq_tract_profiles.py doc/examples/brain_extraction_dwi.py doc/examples/bundle_assignment_maps.py doc/examples/bundle_extraction.py doc/examples/bundle_group_registration.py doc/examples/bundle_registration.py doc/examples/bundle_shape_similarity.py doc/examples/bundlewarp_registration.py doc/examples/cluster_confidence.py doc/examples/combined_workflow_creation.py doc/examples/contextual_enhancement.py doc/examples/denoise_ascm.py doc/examples/denoise_gibbs.py doc/examples/denoise_localpca.py doc/examples/denoise_mppca.py doc/examples/denoise_nlmeans.py doc/examples/denoise_patch2self.py doc/examples/fast_streamline_search.py doc/examples/fiber_to_bundle_coherence.py doc/examples/gradients_spheres.py doc/examples/histology_resdnn.py doc/examples/kfold_xval.py doc/examples/linear_fascicle_evaluation.py doc/examples/motion_correction.py doc/examples/path_length_map.py doc/examples/piesno.py doc/examples/quick_start.py doc/examples/reconst_bingham.py doc/examples/reconst_csa.py doc/examples/reconst_csa_parallel.py doc/examples/reconst_csd.py doc/examples/reconst_csd_parallel.py doc/examples/reconst_cti.py doc/examples/reconst_dki.py doc/examples/reconst_dki_micro.py doc/examples/reconst_dsi.py doc/examples/reconst_dsi_metrics.py doc/examples/reconst_dsid.py doc/examples/reconst_dti.py doc/examples/reconst_forecast.py doc/examples/reconst_fwdti.py doc/examples/reconst_gqi.py doc/examples/reconst_ivim.py doc/examples/reconst_mapmri.py doc/examples/reconst_mcsd.py doc/examples/reconst_msdki.py doc/examples/reconst_qtdmri.py doc/examples/reconst_qti.py doc/examples/reconst_qtiplus.py doc/examples/reconst_rumba.py doc/examples/reconst_sfm.py doc/examples/reconst_sh.py doc/examples/reconst_shore.py doc/examples/reconst_shore_metrics.py doc/examples/register_binary_fuzzy.py doc/examples/reslice_datasets.py doc/examples/restore_dti.py doc/examples/segment_clustering_features.py doc/examples/segment_clustering_metrics.py doc/examples/segment_extending_clustering_framework.py doc/examples/segment_quickbundles.py doc/examples/simulate_dki.py doc/examples/simulate_multi_tensor.py doc/examples/snr_in_cc.py doc/examples/streamline_formats.py doc/examples/streamline_length.py doc/examples/streamline_registration.py doc/examples/streamline_tools.py doc/examples/surface_seed.py doc/examples/syn_registration_2d.py doc/examples/syn_registration_3d.py doc/examples/tissue_classification.py doc/examples/tracking_bootstrap_peaks.py doc/examples/tracking_deterministic.py doc/examples/tracking_introduction_eudx.py doc/examples/tracking_pft.py doc/examples/tracking_probabilistic.py doc/examples/tracking_ptt.py doc/examples/tracking_rumba.py doc/examples/tracking_sfm.py doc/examples/tracking_stopping_criterion.py doc/examples/viz_advanced.py doc/examples/viz_bundles.py doc/examples/viz_roi_contour.py doc/examples/viz_slice.py doc/examples/workflow_creation.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.tJCCFJ + umask 022 + cd /builddir/build/BUILD/python-dipy-1.10.0-build + cd dipy-1.10.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/pyproject-wheeldir --output /builddir/build/BUILD/python-dipy-1.10.0-build/python-dipy-1.10.0-4.fc42.x86_64-pyproject-buildrequires -p Handling meson-python>=0.13.1 from build-system.requires Requirement not satisfied: meson-python>=0.13.1 Handling Cython>=3.0.4 from build-system.requires Requirement not satisfied: Cython>=3.0.4 Handling packaging>21.0 from build-system.requires Requirement satisfied: packaging>21.0 (installed: packaging 24.2) Handling wheel from build-system.requires Requirement not satisfied: wheel Handling numpy>=2.0.0rc1; python_version>='3.9' and platform_python_implementation!='PyPy' from build-system.requires Requirement not satisfied: numpy>=2.0.0rc1; python_version>='3.9' and platform_python_implementation!='PyPy' Handling numpy; python_version>='3.9' and platform_python_implementation=='PyPy' from build-system.requires Ignoring alien requirement: numpy; python_version>='3.9' and platform_python_implementation=='PyPy' Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-dipy-1.10.0-build/python-dipy-1.10.0-4.fc42.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-dipy-1.10.0-4.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: updates 100% | 994.9 KiB/s | 30.8 KiB | 00m00s fedora 100% | 1.2 MiB/s | 31.3 KiB | 00m00s Copr repository 100% | 35.6 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 73.6 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package "gcc-c++-14.2.1-6.fc42.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc42.noarch" is already installed. Package "python3-devel-3.13.1-2.fc42.x86_64" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "python3-pytest-8.3.4-1.fc42.noarch" is already installed. Package Arch Version Repository Size Installing: python3-cython x86_64 3.0.11-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 18.1 MiB python3-meson-python noarch 0.17.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.7 KiB python3-numpy x86_64 1:2.2.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.8 MiB python3-pip noarch 24.3.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.3 MiB python3-wheel noarch 1:0.44.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 521.0 KiB Installing dependencies: emacs-filesystem noarch 1:30.0-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B flexiblas x86_64 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 48.5 KiB flexiblas-netlib x86_64 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.7 MiB flexiblas-openblas-openmp x86_64 3.4.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43.3 KiB libgfortran x86_64 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB libquadmath x86_64 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 325.9 KiB meson noarch 1.5.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.4 MiB ninja-build x86_64 1.12.1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 432.6 KiB openblas x86_64 0.3.28-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.6 KiB openblas-openmp x86_64 0.3.28-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.3 MiB patchelf x86_64 0.18.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 283.6 KiB python3-pyproject-metadata noarch 0.8.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 92.0 KiB python3-setuptools noarch 74.1.3-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.4 MiB vim-filesystem noarch 2:9.1.906-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.0 B Transaction Summary: Installing: 19 packages Total size of inbound packages is 28 MiB. Need to download 28 MiB. After this operation, 145 MiB extra will be used (install 145 MiB, remove 0 B). [ 1/19] python3-meson-python-0:0.17.1-1 100% | 1.1 MiB/s | 81.2 KiB | 00m00s [ 2/19] python3-pip-0:24.3.1-1.fc42.noa 100% | 7.4 MiB/s | 2.5 MiB | 00m00s [ 3/19] python3-wheel-1:0.44.0-1.fc42.n 100% | 4.4 MiB/s | 153.5 KiB | 00m00s [ 4/19] python3-cython-0:3.0.11-1.fc41. 100% | 6.9 MiB/s | 3.8 MiB | 00m01s [ 5/19] meson-0:1.5.1-1.fc42.noarch 100% | 7.6 MiB/s | 2.0 MiB | 00m00s [ 6/19] patchelf-0:0.18.0-5.fc41.x86_64 100% | 3.8 MiB/s | 125.5 KiB | 00m00s [ 7/19] python3-pyproject-metadata-0:0. 100% | 1.8 MiB/s | 31.3 KiB | 00m00s [ 8/19] flexiblas-netlib-0:3.4.4-3.fc41 100% | 7.2 MiB/s | 3.2 MiB | 00m00s [ 9/19] ninja-build-0:1.12.1-3.fc41.x86 100% | 4.4 MiB/s | 180.0 KiB | 00m00s [10/19] flexiblas-0:3.4.4-3.fc41.x86_64 100% | 1.5 MiB/s | 25.3 KiB | 00m00s [11/19] flexiblas-openblas-openmp-0:3.4 100% | 1.1 MiB/s | 17.2 KiB | 00m00s [12/19] python3-numpy-1:2.2.0-1.fc42.x8 100% | 7.2 MiB/s | 7.7 MiB | 00m01s [13/19] libgfortran-0:14.2.1-6.fc42.x86 100% | 6.8 MiB/s | 939.2 KiB | 00m00s [14/19] vim-filesystem-2:9.1.906-1.fc42 100% | 962.8 KiB/s | 16.4 KiB | 00m00s [15/19] libquadmath-0:14.2.1-6.fc42.x86 100% | 4.9 MiB/s | 204.3 KiB | 00m00s [16/19] emacs-filesystem-1:30.0-3.fc41. 100% | 446.3 KiB/s | 7.1 KiB | 00m00s [17/19] openblas-0:0.3.28-2.fc42.x86_64 100% | 2.4 MiB/s | 41.0 KiB | 00m00s [18/19] python3-setuptools-0:74.1.3-4.f 100% | 6.9 MiB/s | 1.8 MiB | 00m00s [19/19] openblas-openmp-0:0.3.28-2.fc42 100% | 7.9 MiB/s | 5.0 MiB | 00m01s -------------------------------------------------------------------------------- [19/19] Total 100% | 16.1 MiB/s | 27.8 MiB | 00m02s Running transaction [ 1/21] Verify package files 100% | 200.0 B/s | 19.0 B | 00m00s [ 2/21] Prepare transaction 100% | 311.0 B/s | 19.0 B | 00m00s [ 3/21] Installing libgfortran-0:14.2.1 100% | 253.7 MiB/s | 3.0 MiB | 00m00s [ 4/21] Installing openblas-0:0.3.28-2. 100% | 105.8 MiB/s | 108.3 KiB | 00m00s [ 5/21] Installing openblas-openmp-0:0. 100% | 441.4 MiB/s | 39.3 MiB | 00m00s [ 6/21] Installing emacs-filesystem-1:3 100% | 0.0 B/s | 544.0 B | 00m00s [ 7/21] Installing vim-filesystem-2:9.1 100% | 2.3 MiB/s | 4.7 KiB | 00m00s [ 8/21] Installing ninja-build-0:1.12.1 100% | 141.9 MiB/s | 435.8 KiB | 00m00s [ 9/21] Installing libquadmath-0:14.2.1 100% | 159.8 MiB/s | 327.2 KiB | 00m00s [10/21] Installing flexiblas-0:3.4.4-3. 100% | 48.5 MiB/s | 49.7 KiB | 00m00s [11/21] Installing flexiblas-openblas-o 100% | 43.1 MiB/s | 44.1 KiB | 00m00s [12/21] Installing flexiblas-netlib-0:3 100% | 304.7 MiB/s | 10.7 MiB | 00m00s [13/21] Installing python3-setuptools-0 100% | 118.9 MiB/s | 8.6 MiB | 00m00s [14/21] Installing meson-0:1.5.1-1.fc42 100% | 192.0 MiB/s | 11.5 MiB | 00m00s [15/21] Installing python3-pyproject-me 100% | 46.4 MiB/s | 95.0 KiB | 00m00s [16/21] Installing patchelf-0:0.18.0-5. 100% | 92.9 MiB/s | 285.4 KiB | 00m00s [17/21] Installing python3-meson-python 100% | 55.4 MiB/s | 283.7 KiB | 00m00s [18/21] Installing python3-numpy-1:2.2. 100% | 241.6 MiB/s | 41.1 MiB | 00m00s [19/21] Installing python3-wheel-1:0.44 100% | 58.7 MiB/s | 540.6 KiB | 00m00s [20/21] Installing python3-pip-0:24.3.1 100% | 117.3 MiB/s | 11.6 MiB | 00m00s [21/21] Installing python3-cython-0:3.0 100% | 123.5 MiB/s | 18.3 MiB | 00m00s Warning: skipped OpenPGP checks for 19 packages from repository: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1733961600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.6xzpt7 + umask 022 + cd /builddir/build/BUILD/python-dipy-1.10.0-build + cd dipy-1.10.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/pyproject-wheeldir --output /builddir/build/BUILD/python-dipy-1.10.0-build/python-dipy-1.10.0-4.fc42.x86_64-pyproject-buildrequires -p Handling meson-python>=0.13.1 from build-system.requires Requirement satisfied: meson-python>=0.13.1 (installed: meson-python 0.17.1) Handling Cython>=3.0.4 from build-system.requires Requirement satisfied: Cython>=3.0.4 (installed: Cython 3.0.11) Handling packaging>21.0 from build-system.requires Requirement satisfied: packaging>21.0 (installed: packaging 24.2) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.44.0) Handling numpy>=2.0.0rc1; python_version>='3.9' and platform_python_implementation!='PyPy' from build-system.requires Requirement satisfied: numpy>=2.0.0rc1; python_version>='3.9' and platform_python_implementation!='PyPy' (installed: numpy 2.2.0) Handling numpy; python_version>='3.9' and platform_python_implementation=='PyPy' from build-system.requires Ignoring alien requirement: numpy; python_version>='3.9' and platform_python_implementation=='PyPy' Handling numpy>=1.22.4 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement satisfied: numpy>=1.22.4 (installed: numpy 2.2.0) Handling scipy>=1.8 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement not satisfied: scipy>=1.8 Handling nibabel>=3.0.0 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement not satisfied: nibabel>=3.0.0 Handling h5py>=3.1.0 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement not satisfied: h5py>=3.1.0 Handling packaging>=21 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement satisfied: packaging>=21 (installed: packaging 24.2) Handling tqdm>=4.30.0 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement not satisfied: tqdm>=4.30.0 Handling trx-python>=0.2.9 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement not satisfied: trx-python>=0.2.9 Handling dipy[dev,doc,style,test, viz, ml, extra] from pyproject.toml generated metadata: [optional-dependencies] all (dipy) Ignoring alien requirement: dipy[dev,doc,style,test, viz, ml, extra] Handling ruff from pyproject.toml generated metadata: [optional-dependencies] style (dipy) Ignoring alien requirement: ruff Handling pre-commit from pyproject.toml generated metadata: [optional-dependencies] style (dipy) Ignoring alien requirement: pre-commit Handling fury>=0.10.0 from pyproject.toml generated metadata: [optional-dependencies] viz (dipy) Ignoring alien requirement: fury>=0.10.0 Handling matplotlib from pyproject.toml generated metadata: [optional-dependencies] viz (dipy) Ignoring alien requirement: matplotlib Handling pytest from pyproject.toml generated metadata: [optional-dependencies] test (dipy) Ignoring alien requirement: pytest Handling coverage from pyproject.toml generated metadata: [optional-dependencies] test (dipy) Ignoring alien requirement: coverage Handling coveralls from pyproject.toml generated metadata: [optional-dependencies] test (dipy) Ignoring alien requirement: coveralls Handling codecov from pyproject.toml generated metadata: [optional-dependencies] test (dipy) Ignoring alien requirement: codecov Handling asv from pyproject.toml generated metadata: [optional-dependencies] test (dipy) Ignoring alien requirement: asv Handling scikit_learn from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: scikit_learn Handling pandas from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: pandas Handling statsmodels>=0.14.0 from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: statsmodels>=0.14.0 Handling tables from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: tables Handling tensorflow from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: tensorflow Handling torch from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: torch Handling meson-python>=0.13 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: meson-python>=0.13 Handling wheel from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: wheel Handling setuptools~=69.5 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: setuptools~=69.5 Handling packaging>=21 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: packaging>=21 Handling ninja from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: ninja Handling Cython>=0.29.35 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: Cython>=0.29.35 Handling numpy>=1.22.4 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: numpy>=1.22.4 Handling spin>=0.5 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: spin>=0.5 Handling build from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: build Handling dipy[viz, ml] from pyproject.toml generated metadata: [optional-dependencies] extra (dipy) Ignoring alien requirement: dipy[viz, ml] Handling cvxpy from pyproject.toml generated metadata: [optional-dependencies] extra (dipy) Ignoring alien requirement: cvxpy Handling scikit-image from pyproject.toml generated metadata: [optional-dependencies] extra (dipy) Ignoring alien requirement: scikit-image Handling boto3 from pyproject.toml generated metadata: [optional-dependencies] extra (dipy) Ignoring alien requirement: boto3 Handling numpydoc from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: numpydoc Handling sphinx>=7.2.6 from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: sphinx>=7.2.6 Handling texext from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: texext Handling tomli; python_version < "3.11" from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: tomli; python_version < "3.11" Handling sphinxcontrib-bibtex from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: sphinxcontrib-bibtex Handling sphinx_design from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: sphinx_design Handling sphinx-gallery>=0.10.0 from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: sphinx-gallery>=0.10.0 Handling tomli>=2.0.1 from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: tomli>=2.0.1 Handling grg-sphinx-theme>=0.4.0 from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: grg-sphinx-theme>=0.4.0 Handling Jinja2 from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: Jinja2 + cat /builddir/build/BUILD/python-dipy-1.10.0-build/python-dipy-1.10.0-4.fc42.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-dipy-1.10.0-4.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: updates 100% | 1.1 MiB/s | 30.8 KiB | 00m00s fedora 100% | 1.2 MiB/s | 31.3 KiB | 00m00s Copr repository 100% | 51.0 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 72.2 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package "gcc-c++-14.2.1-6.fc42.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc42.noarch" is already installed. Package "python3-devel-3.13.1-2.fc42.x86_64" is already installed. Package "python3-cython-3.0.11-1.fc41.x86_64" is already installed. Package "python3-meson-python-0.17.1-1.fc42.noarch" is already installed. Package "python3-numpy-1:2.2.0-1.fc42.x86_64" is already installed. Package "python3-numpy-1:2.2.0-1.fc42.x86_64" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "python3-pip-24.3.1-1.fc42.noarch" is already installed. Package "python3-pytest-8.3.4-1.fc42.noarch" is already installed. Package "python3-wheel-1:0.44.0-1.fc42.noarch" is already installed. Package Arch Version Repository Size Installing: python3-h5py x86_64 3.12.1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.4 MiB python3-nibabel noarch 5.3.2-3.fc42 copr_base 12.7 MiB python3-scipy x86_64 1.14.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.1 MiB python3-tqdm noarch 4.67.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 566.8 KiB python3-trx-python noarch 0.3-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 285.9 KiB Installing dependencies: hdf5 x86_64 1.14.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.1 MiB libaec x86_64 1.1.3-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 98.1 KiB liblzf x86_64 3.6-29.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53.8 KiB python3-cached_property noarch 2.0.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 34.8 KiB python3-charset-normalizer noarch 3.4.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 319.9 KiB python3-deepdiff noarch 8.0.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 646.3 KiB python3-idna noarch 3.10-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 628.0 KiB python3-numpy-f2py x86_64 1:2.2.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB python3-orderly-set noarch 5.2.2-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.2 KiB python3-platformdirs noarch 4.2.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 168.6 KiB python3-pooch noarch 1.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 625.5 KiB python3-requests noarch 2.32.3-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 485.9 KiB python3-six noarch 1.16.0-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 118.3 KiB python3-urllib3 noarch 2.2.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB Transaction Summary: Installing: 19 packages Total size of inbound packages is 26 MiB. Need to download 26 MiB. After this operation, 98 MiB extra will be used (install 98 MiB, remove 0 B). [ 1/19] python3-nibabel-0:5.3.2-3.fc42. 100% | 31.0 MiB/s | 3.6 MiB | 00m00s [ 2/19] python3-tqdm-0:4.67.1-1.fc42.no 100% | 2.1 MiB/s | 158.1 KiB | 00m00s [ 3/19] python3-trx-python-0:0.3-2.fc41 100% | 3.7 MiB/s | 93.8 KiB | 00m00s [ 4/19] python3-h5py-0:3.12.1-3.fc42.x8 100% | 5.1 MiB/s | 1.1 MiB | 00m00s [ 5/19] python3-numpy-f2py-1:2.2.0-1.fc 100% | 6.6 MiB/s | 448.2 KiB | 00m00s [ 6/19] python3-deepdiff-0:8.0.1-1.fc42 100% | 4.3 MiB/s | 183.5 KiB | 00m00s [ 7/19] python3-pooch-0:1.8.2-3.fc41.no 100% | 3.7 MiB/s | 126.4 KiB | 00m00s [ 8/19] python3-platformdirs-0:4.2.2-2. 100% | 1.7 MiB/s | 41.0 KiB | 00m00s [ 9/19] python3-requests-0:2.32.3-3.fc4 100% | 4.4 MiB/s | 149.0 KiB | 00m00s [10/19] liblzf-0:3.6-29.fc41.x86_64 100% | 1.6 MiB/s | 28.0 KiB | 00m00s [11/19] python3-cached_property-0:2.0.1 100% | 1.2 MiB/s | 19.9 KiB | 00m00s [12/19] python3-six-0:1.16.0-23.fc41.no 100% | 2.4 MiB/s | 41.2 KiB | 00m00s [13/19] python3-orderly-set-0:5.2.2-3.f 100% | 1.9 MiB/s | 32.6 KiB | 00m00s [14/19] hdf5-0:1.14.5-1.fc42.x86_64 100% | 7.5 MiB/s | 2.1 MiB | 00m00s [15/19] libaec-0:1.1.3-1.fc42.x86_64 100% | 2.1 MiB/s | 37.4 KiB | 00m00s [16/19] python3-charset-normalizer-0:3. 100% | 3.0 MiB/s | 101.4 KiB | 00m00s [17/19] python3-idna-0:3.10-1.fc42.noar 100% | 4.2 MiB/s | 111.7 KiB | 00m00s [18/19] python3-urllib3-0:2.2.3-3.fc42. 100% | 5.0 MiB/s | 259.0 KiB | 00m00s [19/19] python3-scipy-0:1.14.1-1.fc42.x 100% | 7.2 MiB/s | 17.1 MiB | 00m02s -------------------------------------------------------------------------------- [19/19] Total 100% | 10.9 MiB/s | 25.7 MiB | 00m02s Running transaction [ 1/21] Verify package files 100% | 218.0 B/s | 19.0 B | 00m00s [ 2/21] Prepare transaction 100% | 311.0 B/s | 19.0 B | 00m00s [ 3/21] Installing python3-idna-0:3.10- 100% | 123.9 MiB/s | 634.3 KiB | 00m00s [ 4/21] Installing python3-urllib3-0:2. 100% | 111.3 MiB/s | 1.0 MiB | 00m00s [ 5/21] Installing python3-charset-norm 100% | 80.5 MiB/s | 329.8 KiB | 00m00s [ 6/21] Installing python3-requests-0:2 100% | 97.3 MiB/s | 498.0 KiB | 00m00s [ 7/21] Installing libaec-0:1.1.3-1.fc4 100% | 49.1 MiB/s | 100.5 KiB | 00m00s [ 8/21] Installing hdf5-0:1.14.5-1.fc42 100% | 237.3 MiB/s | 7.1 MiB | 00m00s [ 9/21] Installing python3-orderly-set- 100% | 52.1 MiB/s | 106.7 KiB | 00m00s [10/21] Installing python3-deepdiff-0:8 100% | 128.3 MiB/s | 656.9 KiB | 00m00s [11/21] Installing python3-six-0:1.16.0 100% | 117.9 MiB/s | 120.7 KiB | 00m00s [12/21] Installing python3-cached_prope 100% | 36.6 MiB/s | 37.5 KiB | 00m00s [13/21] Installing liblzf-0:3.6-29.fc41 100% | 27.4 MiB/s | 56.2 KiB | 00m00s [14/21] Installing python3-platformdirs 100% | 85.5 MiB/s | 175.0 KiB | 00m00s [15/21] Installing python3-pooch-0:1.8. 100% | 89.4 MiB/s | 640.5 KiB | 00m00s [16/21] Installing python3-numpy-f2py-1 100% | 86.1 MiB/s | 2.1 MiB | 00m00s [17/21] Installing python3-nibabel-0:5. 100% | 186.0 MiB/s | 12.8 MiB | 00m00s [18/21] Installing python3-trx-python-0 100% | 41.2 MiB/s | 295.2 KiB | 00m00s [19/21] Installing python3-scipy-0:1.14 100% | 245.3 MiB/s | 67.5 MiB | 00m00s [20/21] Installing python3-h5py-0:3.12. 100% | 211.2 MiB/s | 4.4 MiB | 00m00s [21/21] Installing python3-tqdm-0:4.67. 100% | 18.0 MiB/s | 590.0 KiB | 00m00s Warning: skipped OpenPGP checks for 19 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1733961600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.osBBRs + umask 022 + cd /builddir/build/BUILD/python-dipy-1.10.0-build + cd dipy-1.10.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/pyproject-wheeldir --output /builddir/build/BUILD/python-dipy-1.10.0-build/python-dipy-1.10.0-4.fc42.x86_64-pyproject-buildrequires -p Handling meson-python>=0.13.1 from build-system.requires Requirement satisfied: meson-python>=0.13.1 (installed: meson-python 0.17.1) Handling Cython>=3.0.4 from build-system.requires Requirement satisfied: Cython>=3.0.4 (installed: Cython 3.0.11) Handling packaging>21.0 from build-system.requires Requirement satisfied: packaging>21.0 (installed: packaging 24.2) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.44.0) Handling numpy>=2.0.0rc1; python_version>='3.9' and platform_python_implementation!='PyPy' from build-system.requires Requirement satisfied: numpy>=2.0.0rc1; python_version>='3.9' and platform_python_implementation!='PyPy' (installed: numpy 2.2.0) Handling numpy; python_version>='3.9' and platform_python_implementation=='PyPy' from build-system.requires Ignoring alien requirement: numpy; python_version>='3.9' and platform_python_implementation=='PyPy' Handling numpy>=1.22.4 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement satisfied: numpy>=1.22.4 (installed: numpy 2.2.0) Handling scipy>=1.8 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement satisfied: scipy>=1.8 (installed: scipy 1.14.1) Handling nibabel>=3.0.0 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement satisfied: nibabel>=3.0.0 (installed: nibabel 5.3.2) Handling h5py>=3.1.0 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement satisfied: h5py>=3.1.0 (installed: h5py 3.12.1) Handling packaging>=21 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement satisfied: packaging>=21 (installed: packaging 24.2) Handling tqdm>=4.30.0 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement satisfied: tqdm>=4.30.0 (installed: tqdm 4.67.1) Handling trx-python>=0.2.9 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement satisfied: trx-python>=0.2.9 (installed: trx-python 0.3) Handling dipy[dev,doc,style,test, viz, ml, extra] from pyproject.toml generated metadata: [optional-dependencies] all (dipy) Ignoring alien requirement: dipy[dev,doc,style,test, viz, ml, extra] Handling ruff from pyproject.toml generated metadata: [optional-dependencies] style (dipy) Ignoring alien requirement: ruff Handling pre-commit from pyproject.toml generated metadata: [optional-dependencies] style (dipy) Ignoring alien requirement: pre-commit Handling fury>=0.10.0 from pyproject.toml generated metadata: [optional-dependencies] viz (dipy) Ignoring alien requirement: fury>=0.10.0 Handling matplotlib from pyproject.toml generated metadata: [optional-dependencies] viz (dipy) Ignoring alien requirement: matplotlib Handling pytest from pyproject.toml generated metadata: [optional-dependencies] test (dipy) Ignoring alien requirement: pytest Handling coverage from pyproject.toml generated metadata: [optional-dependencies] test (dipy) Ignoring alien requirement: coverage Handling coveralls from pyproject.toml generated metadata: [optional-dependencies] test (dipy) Ignoring alien requirement: coveralls Handling codecov from pyproject.toml generated metadata: [optional-dependencies] test (dipy) Ignoring alien requirement: codecov Handling asv from pyproject.toml generated metadata: [optional-dependencies] test (dipy) Ignoring alien requirement: asv Handling scikit_learn from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: scikit_learn Handling pandas from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: pandas Handling statsmodels>=0.14.0 from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: statsmodels>=0.14.0 Handling tables from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: tables Handling tensorflow from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: tensorflow Handling torch from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: torch Handling meson-python>=0.13 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: meson-python>=0.13 Handling wheel from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: wheel Handling setuptools~=69.5 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: setuptools~=69.5 Handling packaging>=21 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: packaging>=21 Handling ninja from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: ninja Handling Cython>=0.29.35 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: Cython>=0.29.35 Handling numpy>=1.22.4 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: numpy>=1.22.4 Handling spin>=0.5 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: spin>=0.5 Handling build from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: build Handling dipy[viz, ml] from pyproject.toml generated metadata: [optional-dependencies] extra (dipy) Ignoring alien requirement: dipy[viz, ml] Handling cvxpy from pyproject.toml generated metadata: [optional-dependencies] extra (dipy) Ignoring alien requirement: cvxpy Handling scikit-image from pyproject.toml generated metadata: [optional-dependencies] extra (dipy) Ignoring alien requirement: scikit-image Handling boto3 from pyproject.toml generated metadata: [optional-dependencies] extra (dipy) Ignoring alien requirement: boto3 Handling numpydoc from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: numpydoc Handling sphinx>=7.2.6 from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: sphinx>=7.2.6 Handling texext from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: texext Handling tomli; python_version < "3.11" from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: tomli; python_version < "3.11" Handling sphinxcontrib-bibtex from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: sphinxcontrib-bibtex Handling sphinx_design from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: sphinx_design Handling sphinx-gallery>=0.10.0 from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: sphinx-gallery>=0.10.0 Handling tomli>=2.0.1 from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: tomli>=2.0.1 Handling grg-sphinx-theme>=0.4.0 from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: grg-sphinx-theme>=0.4.0 Handling Jinja2 from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: Jinja2 + cat /builddir/build/BUILD/python-dipy-1.10.0-build/python-dipy-1.10.0-4.fc42.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-dipy-1.10.0-4.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 1.0 MiB/s | 31.3 KiB | 00m00s Copr repository 100% | 51.0 KiB/s | 1.5 KiB | 00m00s updates 100% | 1.2 MiB/s | 30.8 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 73.6 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Nothing to do. Package "gcc-c++-14.2.1-6.fc42.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc42.noarch" is already installed. Package "python3-devel-3.13.1-2.fc42.x86_64" is already installed. Package "python3-cython-3.0.11-1.fc41.x86_64" is already installed. Package "python3-h5py-3.12.1-3.fc42.x86_64" is already installed. Package "python3-meson-python-0.17.1-1.fc42.noarch" is already installed. Package "python3-nibabel-5.3.2-3.fc42.noarch" is already installed. Package "python3-numpy-1:2.2.0-1.fc42.x86_64" is already installed. Package "python3-numpy-1:2.2.0-1.fc42.x86_64" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "python3-pip-24.3.1-1.fc42.noarch" is already installed. Package "python3-pytest-8.3.4-1.fc42.noarch" is already installed. Package "python3-scipy-1.14.1-1.fc42.x86_64" is already installed. Package "python3-tqdm-4.67.1-1.fc42.noarch" is already installed. Package "python3-trx-python-0.3-2.fc41.noarch" is already installed. Package "python3-wheel-1:0.44.0-1.fc42.noarch" is already installed. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1733961600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.FCLn6b + umask 022 + cd /builddir/build/BUILD/python-dipy-1.10.0-build + cd dipy-1.10.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/pyproject-wheeldir --output /builddir/build/BUILD/python-dipy-1.10.0-build/python-dipy-1.10.0-4.fc42.x86_64-pyproject-buildrequires -p Handling meson-python>=0.13.1 from build-system.requires Requirement satisfied: meson-python>=0.13.1 (installed: meson-python 0.17.1) Handling Cython>=3.0.4 from build-system.requires Requirement satisfied: Cython>=3.0.4 (installed: Cython 3.0.11) Handling packaging>21.0 from build-system.requires Requirement satisfied: packaging>21.0 (installed: packaging 24.2) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.44.0) Handling numpy>=2.0.0rc1; python_version>='3.9' and platform_python_implementation!='PyPy' from build-system.requires Requirement satisfied: numpy>=2.0.0rc1; python_version>='3.9' and platform_python_implementation!='PyPy' (installed: numpy 2.2.0) Handling numpy; python_version>='3.9' and platform_python_implementation=='PyPy' from build-system.requires Ignoring alien requirement: numpy; python_version>='3.9' and platform_python_implementation=='PyPy' Handling numpy>=1.22.4 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement satisfied: numpy>=1.22.4 (installed: numpy 2.2.0) Handling scipy>=1.8 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement satisfied: scipy>=1.8 (installed: scipy 1.14.1) Handling nibabel>=3.0.0 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement satisfied: nibabel>=3.0.0 (installed: nibabel 5.3.2) Handling h5py>=3.1.0 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement satisfied: h5py>=3.1.0 (installed: h5py 3.12.1) Handling packaging>=21 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement satisfied: packaging>=21 (installed: packaging 24.2) Handling tqdm>=4.30.0 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement satisfied: tqdm>=4.30.0 (installed: tqdm 4.67.1) Handling trx-python>=0.2.9 from pyproject.toml generated metadata: [dependencies] (dipy) Requirement satisfied: trx-python>=0.2.9 (installed: trx-python 0.3) Handling dipy[dev,doc,style,test, viz, ml, extra] from pyproject.toml generated metadata: [optional-dependencies] all (dipy) Ignoring alien requirement: dipy[dev,doc,style,test, viz, ml, extra] Handling ruff from pyproject.toml generated metadata: [optional-dependencies] style (dipy) Ignoring alien requirement: ruff Handling pre-commit from pyproject.toml generated metadata: [optional-dependencies] style (dipy) Ignoring alien requirement: pre-commit Handling fury>=0.10.0 from pyproject.toml generated metadata: [optional-dependencies] viz (dipy) Ignoring alien requirement: fury>=0.10.0 Handling matplotlib from pyproject.toml generated metadata: [optional-dependencies] viz (dipy) Ignoring alien requirement: matplotlib Handling pytest from pyproject.toml generated metadata: [optional-dependencies] test (dipy) Ignoring alien requirement: pytest Handling coverage from pyproject.toml generated metadata: [optional-dependencies] test (dipy) Ignoring alien requirement: coverage Handling coveralls from pyproject.toml generated metadata: [optional-dependencies] test (dipy) Ignoring alien requirement: coveralls Handling codecov from pyproject.toml generated metadata: [optional-dependencies] test (dipy) Ignoring alien requirement: codecov Handling asv from pyproject.toml generated metadata: [optional-dependencies] test (dipy) Ignoring alien requirement: asv Handling scikit_learn from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: scikit_learn Handling pandas from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: pandas Handling statsmodels>=0.14.0 from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: statsmodels>=0.14.0 Handling tables from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: tables Handling tensorflow from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: tensorflow Handling torch from pyproject.toml generated metadata: [optional-dependencies] ml (dipy) Ignoring alien requirement: torch Handling meson-python>=0.13 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: meson-python>=0.13 Handling wheel from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: wheel Handling setuptools~=69.5 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: setuptools~=69.5 Handling packaging>=21 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: packaging>=21 Handling ninja from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: ninja Handling Cython>=0.29.35 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: Cython>=0.29.35 Handling numpy>=1.22.4 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: numpy>=1.22.4 Handling spin>=0.5 from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: spin>=0.5 Handling build from pyproject.toml generated metadata: [optional-dependencies] dev (dipy) Ignoring alien requirement: build Handling dipy[viz, ml] from pyproject.toml generated metadata: [optional-dependencies] extra (dipy) Ignoring alien requirement: dipy[viz, ml] Handling cvxpy from pyproject.toml generated metadata: [optional-dependencies] extra (dipy) Ignoring alien requirement: cvxpy Handling scikit-image from pyproject.toml generated metadata: [optional-dependencies] extra (dipy) Ignoring alien requirement: scikit-image Handling boto3 from pyproject.toml generated metadata: [optional-dependencies] extra (dipy) Ignoring alien requirement: boto3 Handling numpydoc from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: numpydoc Handling sphinx>=7.2.6 from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: sphinx>=7.2.6 Handling texext from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: texext Handling tomli; python_version < "3.11" from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: tomli; python_version < "3.11" Handling sphinxcontrib-bibtex from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: sphinxcontrib-bibtex Handling sphinx_design from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: sphinx_design Handling sphinx-gallery>=0.10.0 from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: sphinx-gallery>=0.10.0 Handling tomli>=2.0.1 from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: tomli>=2.0.1 Handling grg-sphinx-theme>=0.4.0 from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: grg-sphinx-theme>=0.4.0 Handling Jinja2 from pyproject.toml generated metadata: [optional-dependencies] doc (dipy) Ignoring alien requirement: Jinja2 + cat /builddir/build/BUILD/python-dipy-1.10.0-build/python-dipy-1.10.0-4.fc42.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.H7t0VN + umask 022 + cd /builddir/build/BUILD/python-dipy-1.10.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd dipy-1.10.0 + mkdir -p /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/pyproject-wheeldir Processing /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) + meson setup /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0 /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --native-file=/builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/meson-python-native-file.ini The Meson build system Version: 1.5.1 Source dir: /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0 Build dir: /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw Build type: native build Project name: dipy Project version: 1.10.0 C compiler for the host machine: gcc (gcc 14.2.1 "gcc (GCC) 14.2.1 20241104 (Red Hat 14.2.1-6)") C linker for the host machine: gcc ld.bfd 2.43.50.20241126 C++ compiler for the host machine: g++ (gcc 14.2.1 "g++ (GCC) 14.2.1 20241104 (Red Hat 14.2.1-6)") C++ linker for the host machine: g++ ld.bfd 2.43.50.20241126 Cython compiler for the host machine: cython (cython 3.0.11) Host machine cpu family: x86_64 Host machine cpu: x86_64 Program python found: YES (/usr/bin/python3) Found pkg-config: YES (/usr/bin/pkg-config) 2.3.0 Run-time dependency python found: YES 3.13 Program cython found: YES (/usr/bin/cython) Library m found: YES Compiler for C supports arguments -Wno-maybe-uninitialized: YES Compiler for C supports arguments -Wno-discarded-qualifiers: YES Compiler for C supports arguments -Wno-empty-body: YES Compiler for C supports arguments -Wno-implicit-function-declaration: YES Compiler for C supports arguments -Wno-parentheses: YES Compiler for C supports arguments -Wno-switch: YES Compiler for C supports arguments -Wno-unused-label: YES Compiler for C supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-cpp: YES Compiler for C++ supports arguments -Wno-deprecated-declarations: YES Compiler for C++ supports arguments -Wno-class-memaccess: YES Compiler for C++ supports arguments -Wno-format-truncation: YES Compiler for C++ supports arguments -Wno-format-extra-args: YES Compiler for C++ supports arguments -Wno-format: NO Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES Compiler for C++ supports arguments -Wno-sign-compare: YES Compiler for C++ supports arguments -Wno-switch: YES Compiler for C++ supports arguments -Wno-terminate: YES Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES Compiler for C++ supports arguments -Wno-unused-function: YES Compiler for C++ supports arguments -Wno-unused-local-typedefs: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-int-in-bool-context: YES Run-time dependency OpenMP found: YES 4.5 Checking if "SSE intrinsics" compiles: YES Checking if "compiler supports SSE4.1 intrinsics" : links: NO Checking if "compiler supports AVX intrinsics" : links: NO Checking if "ARM NEON intrinsics" compiles: NO Build targets in project: 45 dipy 1.10.0 User defined options Native files: /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/meson-python-native-file.ini buildtype : release b_ndebug : if-release b_vscrt : md Found ninja-1.12.1 at /usr/bin/ninja Generating targets: 0%| | 0/45 eta ? Writing build.ninja: 0%| | 0/188 eta ? + /usr/bin/ninja [1/123] Copying file dipy/__init__.py [2/123] Copying file dipy/cythonutils.h [3/123] Copying file dipy/conditional_omp.h [4/123] Copying file dipy/dpy_math.h [5/123] Generating dipy/generate-version with a custom command [6/123] Copying file dipy/safe_openmp.pxd [7/123] Generating 'dipy/align/bundlemin.cpython-313-x86_64-linux-gnu.so.p/bundlemin.c' [8/123] Generating 'dipy/align/expectmax.cpython-313-x86_64-linux-gnu.so.p/expectmax.c' [9/123] Generating 'dipy/align/crosscorr.cpython-313-x86_64-linux-gnu.so.p/crosscorr.c' [10/123] Generating 'dipy/align/parzenhist.cpython-313-x86_64-linux-gnu.so.p/parzenhist.c' [11/123] Generating 'dipy/align/transforms.cpython-313-x86_64-linux-gnu.so.p/transforms.c' [12/123] Generating 'dipy/align/sumsqdiff.cpython-313-x86_64-linux-gnu.so.p/sumsqdiff.c' [13/123] Generating 'dipy/denoise/denspeed.cpython-313-x86_64-linux-gnu.so.p/denspeed.c' [14/123] Generating 'dipy/core/interpolation.cpython-313-x86_64-linux-gnu.so.p/interpolation.c' [15/123] Generating 'dipy/denoise/enhancement_kernel.cpython-313-x86_64-linux-gnu.so.p/enhancement_kernel.c' [16/123] Generating 'dipy/denoise/nlmeans_block.cpython-313-x86_64-linux-gnu.so.p/nlmeans_block.c' [17/123] Generating 'dipy/denoise/pca_noise_estimate.cpython-313-x86_64-linux-gnu.so.p/pca_noise_estimate.c' [18/123] Generating 'dipy/align/vector_fields.cpython-313-x86_64-linux-gnu.so.p/vector_fields.c' [19/123] Generating 'dipy/denoise/shift_twist_convolution.cpython-313-x86_64-linux-gnu.so.p/shift_twist_convolution.c' [20/123] Generating 'dipy/direction/bootstrap_direction_getter.cpython-313-x86_64-linux-gnu.so.p/bootstrap_direction_getter.c' [21/123] Generating 'dipy/direction/closest_peak_direction_getter.cpython-313-x86_64-linux-gnu.so.p/closest_peak_direction_getter.c' [22/123] Generating 'dipy/direction/pmf.cpython-313-x86_64-linux-gnu.so.p/pmf.c' [23/123] Generating 'dipy/direction/probabilistic_direction_getter.cpython-313-x86_64-linux-gnu.so.p/probabilistic_direction_getter.c' [24/123] Generating 'dipy/reconst/eudx_direction_getter.cpython-313-x86_64-linux-gnu.so.p/eudx_direction_getter.c' [25/123] Generating 'dipy/direction/ptt_direction_getter.cpython-313-x86_64-linux-gnu.so.p/ptt_direction_getter.c' [26/123] Generating 'dipy/reconst/quick_squash.cpython-313-x86_64-linux-gnu.so.p/quick_squash.c' [27/123] Generating 'dipy/reconst/vec_val_sum.cpython-313-x86_64-linux-gnu.so.p/vec_val_sum.c' [28/123] Generating 'dipy/reconst/recspeed.cpython-313-x86_64-linux-gnu.so.p/recspeed.c' [29/123] Generating 'dipy/segment/clustering_algorithms.cpython-313-x86_64-linux-gnu.so.p/clustering_algorithms.c' [30/123] Generating 'dipy/segment/clusteringspeed.cpython-313-x86_64-linux-gnu.so.p/clusteringspeed.c' [31/123] Generating 'dipy/segment/cythonutils.cpython-313-x86_64-linux-gnu.so.p/cythonutils.c' [32/123] Generating 'dipy/segment/featurespeed.cpython-313-x86_64-linux-gnu.so.p/featurespeed.c' [33/123] Generating 'dipy/segment/mrf.cpython-313-x86_64-linux-gnu.so.p/mrf.c' [34/123] Generating 'dipy/segment/metricspeed.cpython-313-x86_64-linux-gnu.so.p/metricspeed.c' [35/123] Generating 'dipy/tracking/direction_getter.cpython-313-x86_64-linux-gnu.so.p/direction_getter.c' [36/123] Generating 'dipy/tracking/distances.cpython-313-x86_64-linux-gnu.so.p/distances.c' [37/123] Generating 'dipy/tracking/fbcmeasures.cpython-313-x86_64-linux-gnu.so.p/fbcmeasures.c' [38/123] Generating 'dipy/tracking/localtrack.cpython-313-x86_64-linux-gnu.so.p/localtrack.c' [39/123] Generating 'dipy/tracking/propspeed.cpython-313-x86_64-linux-gnu.so.p/propspeed.c' [40/123] Generating 'dipy/tracking/stopping_criterion.cpython-313-x86_64-linux-gnu.so.p/stopping_criterion.c' [41/123] Generating 'dipy/tracking/streamlinespeed.cpython-313-x86_64-linux-gnu.so.p/streamlinespeed.c' [42/123] Generating 'dipy/tracking/vox2track.cpython-313-x86_64-linux-gnu.so.p/vox2track.c' [43/123] Generating 'dipy/utils/fast_numpy.cpython-313-x86_64-linux-gnu.so.p/fast_numpy.c' [44/123] Generating 'dipy/utils/omp.cpython-313-x86_64-linux-gnu.so.p/omp.c' [45/123] Generating 'dipy/utils/tests/test_fast_numpy.cpython-313-x86_64-linux-gnu.so.p/test_fast_numpy.c' [46/123] Compiling C object dipy/align/bundlemin.cpython-313-x86_64-linux-gnu.so.p/meson-generated_bundlemin.c.o [47/123] Compiling C object dipy/align/expectmax.cpython-313-x86_64-linux-gnu.so.p/meson-generated_expectmax.c.o [48/123] Compiling C object dipy/align/crosscorr.cpython-313-x86_64-linux-gnu.so.p/meson-generated_crosscorr.c.o [49/123] Compiling C object dipy/align/parzenhist.cpython-313-x86_64-linux-gnu.so.p/meson-generated_parzenhist.c.o [50/123] Compiling C object dipy/align/transforms.cpython-313-x86_64-linux-gnu.so.p/meson-generated_transforms.c.o [51/123] Compiling C object dipy/align/sumsqdiff.cpython-313-x86_64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o [52/123] Compiling C object dipy/denoise/denspeed.cpython-313-x86_64-linux-gnu.so.p/meson-generated_denspeed.c.o [53/123] Compiling C object dipy/denoise/enhancement_kernel.cpython-313-x86_64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o [54/123] Compiling C object dipy/core/interpolation.cpython-313-x86_64-linux-gnu.so.p/meson-generated_interpolation.c.o [55/123] Compiling C object dipy/denoise/nlmeans_block.cpython-313-x86_64-linux-gnu.so.p/meson-generated_nlmeans_block.c.o [56/123] Compiling C object dipy/denoise/pca_noise_estimate.cpython-313-x86_64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o [57/123] Compiling C object dipy/denoise/shift_twist_convolution.cpython-313-x86_64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o [58/123] Compiling C object dipy/direction/bootstrap_direction_getter.cpython-313-x86_64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o [59/123] Compiling C object dipy/direction/closest_peak_direction_getter.cpython-313-x86_64-linux-gnu.so.p/meson-generated_closest_peak_direction_getter.c.o [60/123] Compiling C object dipy/direction/pmf.cpython-313-x86_64-linux-gnu.so.p/meson-generated_pmf.c.o [61/123] Compiling C object dipy/direction/probabilistic_direction_getter.cpython-313-x86_64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o [62/123] Compiling C object dipy/direction/ptt_direction_getter.cpython-313-x86_64-linux-gnu.so.p/meson-generated_ptt_direction_getter.c.o [63/123] Compiling C object dipy/reconst/eudx_direction_getter.cpython-313-x86_64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o [64/123] Compiling C object dipy/reconst/quick_squash.cpython-313-x86_64-linux-gnu.so.p/meson-generated_quick_squash.c.o [65/123] Compiling C object dipy/reconst/vec_val_sum.cpython-313-x86_64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o [66/123] Compiling C object dipy/reconst/recspeed.cpython-313-x86_64-linux-gnu.so.p/meson-generated_recspeed.c.o [67/123] Compiling C object dipy/align/vector_fields.cpython-313-x86_64-linux-gnu.so.p/meson-generated_vector_fields.c.o [68/123] Compiling C object dipy/segment/clustering_algorithms.cpython-313-x86_64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o [69/123] Compiling C object dipy/segment/cythonutils.cpython-313-x86_64-linux-gnu.so.p/meson-generated_cythonutils.c.o [70/123] Compiling C object dipy/segment/clusteringspeed.cpython-313-x86_64-linux-gnu.so.p/meson-generated_clusteringspeed.c.o [71/123] Compiling C object dipy/segment/featurespeed.cpython-313-x86_64-linux-gnu.so.p/meson-generated_featurespeed.c.o [72/123] Compiling C object dipy/segment/mrf.cpython-313-x86_64-linux-gnu.so.p/meson-generated_mrf.c.o [73/123] Compiling C object dipy/segment/metricspeed.cpython-313-x86_64-linux-gnu.so.p/meson-generated_metricspeed.c.o [74/123] Compiling C object dipy/tracking/direction_getter.cpython-313-x86_64-linux-gnu.so.p/meson-generated_direction_getter.c.o [75/123] Compiling C object dipy/tracking/fbcmeasures.cpython-313-x86_64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o [76/123] Compiling C object dipy/tracking/localtrack.cpython-313-x86_64-linux-gnu.so.p/meson-generated_localtrack.c.o [77/123] Compiling C object dipy/tracking/distances.cpython-313-x86_64-linux-gnu.so.p/meson-generated_distances.c.o [78/123] Compiling C object dipy/tracking/propspeed.cpython-313-x86_64-linux-gnu.so.p/meson-generated_propspeed.c.o [79/123] Compiling C object dipy/tracking/streamlinespeed.cpython-313-x86_64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o [80/123] Compiling C object dipy/tracking/stopping_criterion.cpython-313-x86_64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o In file included from /usr/include/string.h:548, from /usr/include/python3.13/Python.h:39, from dipy/tracking/stopping_criterion.cpython-313-x86_64-linux-gnu.so.p/stopping_criterion.c:16: In function ‘memcpy’, inlined from ‘__pyx_f_4dipy_8tracking_18stopping_criterion___pyx_unpickle_StoppingCriterion__set_state’ at dipy/tracking/stopping_criterion.cpython-313-x86_64-linux-gnu.so.p/stopping_criterion.c:30345:3: /usr/include/bits/string_fortified.h:29:10: warning: ‘MEM [(char * {ref-all})&__pyx_t_1]’ may be used uninitialized [-Wmaybe-uninitialized] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ dipy/tracking/stopping_criterion.cpython-313-x86_64-linux-gnu.so.p/stopping_criterion.c: In function ‘__pyx_f_4dipy_8tracking_18stopping_criterion___pyx_unpickle_StoppingCriterion__set_state’: dipy/tracking/stopping_criterion.cpython-313-x86_64-linux-gnu.so.p/stopping_criterion.c:30319:10: note: ‘MEM [(char * {ref-all})&__pyx_t_1]’ was declared here 30319 | double __pyx_t_1[1]; | ^~~~~~~~~ [81/123] Compiling C object dipy/utils/fast_numpy.cpython-313-x86_64-linux-gnu.so.p/meson-generated_fast_numpy.c.o dipy/utils/fast_numpy.cpython-313-x86_64-linux-gnu.so.p/fast_numpy.c:5607:13: warning: ‘__pyx_f_4dipy_5utils_10fast_numpy_print_c_array_pointer’ defined but not used [-Wunused-function] 5607 | static void __pyx_f_4dipy_5utils_10fast_numpy_print_c_array_pointer(double *__pyx_v_arr, int __pyx_v_size) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [82/123] Compiling C object dipy/utils/omp.cpython-313-x86_64-linux-gnu.so.p/meson-generated_omp.c.o [83/123] Compiling C object dipy/tracking/vox2track.cpython-313-x86_64-linux-gnu.so.p/meson-generated_vox2track.c.o [84/123] Linking target dipy/align/bundlemin.cpython-313-x86_64-linux-gnu.so [85/123] Compiling C object dipy/utils/tests/test_fast_numpy.cpython-313-x86_64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o [86/123] Linking target dipy/align/crosscorr.cpython-313-x86_64-linux-gnu.so [87/123] Linking target dipy/align/expectmax.cpython-313-x86_64-linux-gnu.so [88/123] Linking target dipy/align/transforms.cpython-313-x86_64-linux-gnu.so [89/123] Linking target dipy/align/parzenhist.cpython-313-x86_64-linux-gnu.so [90/123] Linking target dipy/align/sumsqdiff.cpython-313-x86_64-linux-gnu.so [91/123] Linking target dipy/denoise/denspeed.cpython-313-x86_64-linux-gnu.so [92/123] Linking target dipy/core/interpolation.cpython-313-x86_64-linux-gnu.so [93/123] Linking target dipy/denoise/enhancement_kernel.cpython-313-x86_64-linux-gnu.so [94/123] Linking target dipy/denoise/nlmeans_block.cpython-313-x86_64-linux-gnu.so [95/123] Linking target dipy/denoise/pca_noise_estimate.cpython-313-x86_64-linux-gnu.so [96/123] Linking target dipy/denoise/shift_twist_convolution.cpython-313-x86_64-linux-gnu.so [97/123] Linking target dipy/direction/bootstrap_direction_getter.cpython-313-x86_64-linux-gnu.so [98/123] Linking target dipy/direction/closest_peak_direction_getter.cpython-313-x86_64-linux-gnu.so [99/123] Linking target dipy/direction/pmf.cpython-313-x86_64-linux-gnu.so [100/123] Linking target dipy/direction/probabilistic_direction_getter.cpython-313-x86_64-linux-gnu.so [101/123] Linking target dipy/direction/ptt_direction_getter.cpython-313-x86_64-linux-gnu.so [102/123] Linking target dipy/reconst/eudx_direction_getter.cpython-313-x86_64-linux-gnu.so [103/123] Linking target dipy/reconst/quick_squash.cpython-313-x86_64-linux-gnu.so [104/123] Linking target dipy/reconst/vec_val_sum.cpython-313-x86_64-linux-gnu.so [105/123] Linking target dipy/reconst/recspeed.cpython-313-x86_64-linux-gnu.so [106/123] Linking target dipy/align/vector_fields.cpython-313-x86_64-linux-gnu.so [107/123] Linking target dipy/segment/clustering_algorithms.cpython-313-x86_64-linux-gnu.so [108/123] Linking target dipy/segment/cythonutils.cpython-313-x86_64-linux-gnu.so [109/123] Linking target dipy/segment/clusteringspeed.cpython-313-x86_64-linux-gnu.so [110/123] Linking target dipy/segment/featurespeed.cpython-313-x86_64-linux-gnu.so [111/123] Linking target dipy/segment/mrf.cpython-313-x86_64-linux-gnu.so [112/123] Linking target dipy/segment/metricspeed.cpython-313-x86_64-linux-gnu.so [113/123] Linking target dipy/tracking/direction_getter.cpython-313-x86_64-linux-gnu.so [114/123] Linking target dipy/tracking/fbcmeasures.cpython-313-x86_64-linux-gnu.so [115/123] Linking target dipy/tracking/distances.cpython-313-x86_64-linux-gnu.so [116/123] Linking target dipy/tracking/localtrack.cpython-313-x86_64-linux-gnu.so [117/123] Linking target dipy/tracking/propspeed.cpython-313-x86_64-linux-gnu.so [118/123] Linking target dipy/tracking/stopping_criterion.cpython-313-x86_64-linux-gnu.so [119/123] Linking target dipy/utils/fast_numpy.cpython-313-x86_64-linux-gnu.so [120/123] Linking target dipy/tracking/streamlinespeed.cpython-313-x86_64-linux-gnu.so [121/123] Linking target dipy/tracking/vox2track.cpython-313-x86_64-linux-gnu.so [122/123] Linking target dipy/utils/omp.cpython-313-x86_64-linux-gnu.so [123/123] Linking target dipy/utils/tests/test_fast_numpy.cpython-313-x86_64-linux-gnu.so [1/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/version.py [2/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/align/bundlemin.cpython-313-x86_64-linux-gnu.so [3/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/align/crosscorr.cpython-313-x86_64-linux-gnu.so [4/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/align/expectmax.cpython-313-x86_64-linux-gnu.so [5/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/align/parzenhist.cpython-313-x86_64-linux-gnu.so [6/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/align/sumsqdiff.cpython-313-x86_64-linux-gnu.so [7/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/align/transforms.cpython-313-x86_64-linux-gnu.so [8/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/align/vector_fields.cpython-313-x86_64-linux-gnu.so [9/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/core/interpolation.cpython-313-x86_64-linux-gnu.so [10/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/denoise/denspeed.cpython-313-x86_64-linux-gnu.so [11/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/denoise/enhancement_kernel.cpython-313-x86_64-linux-gnu.so [12/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/denoise/nlmeans_block.cpython-313-x86_64-linux-gnu.so [13/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/denoise/pca_noise_estimate.cpython-313-x86_64-linux-gnu.so [14/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/denoise/shift_twist_convolution.cpython-313-x86_64-linux-gnu.so [15/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/direction/bootstrap_direction_getter.cpython-313-x86_64-linux-gnu.so [16/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/direction/closest_peak_direction_getter.cpython-313-x86_64-linux-gnu.so [17/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/direction/pmf.cpython-313-x86_64-linux-gnu.so [18/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.mesonpy-bliqs2mw/dipy/direction/probabilistic_direction_getter.cpython-313-x86_64-linux-gnu.so [19/545] 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/builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/dipy/../doc/examples/tracking_rumba.py [539/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/dipy/../doc/examples/tracking_sfm.py [540/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/dipy/../doc/examples/tracking_stopping_criterion.py [541/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/dipy/../doc/examples/viz_advanced.py [542/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/dipy/../doc/examples/viz_bundles.py [543/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/dipy/../doc/examples/viz_roi_contour.py [544/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/dipy/../doc/examples/viz_slice.py [545/545] /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/dipy/../doc/examples/workflow_creation.py Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: dipy Building wheel for dipy (pyproject.toml): started Running command Building wheel for dipy (pyproject.toml) Building wheel for dipy (pyproject.toml): finished with status 'done' Created wheel for dipy: filename=dipy-1.10.0-cp313-cp313-linux_x86_64.whl size=31469461 sha256=9d6725e1ed20d224095278670c8af5f3f708b4dfafc76e9cb5e27324ea356a08 Stored in directory: /builddir/.cache/pip/wheels/7e/d6/9e/09ce82fc8017967f8cc8510fe60bb6e2a80a7b47af95042dd4 Successfully built dipy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.sTLRVC + umask 022 + cd /builddir/build/BUILD/python-dipy-1.10.0-build + '[' /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-dipy-1.10.0-build + mkdir /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd dipy-1.10.0 ++ ls /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/pyproject-wheeldir/dipy-1.10.0-cp313-cp313-linux_x86_64.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=dipy==1.10.0 + '[' -z dipy==1.10.0 ']' + TMPDIR=/builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/pyproject-wheeldir dipy==1.10.0 Using pip 24.3.1 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/pyproject-wheeldir Processing ./pyproject-wheeldir/dipy-1.10.0-cp313-cp313-linux_x86_64.whl Installing collected packages: dipy Creating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_align_syn to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_align_affine to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_apply_transform to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_buan_shapes to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_buan_profiles to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_buan_lmm to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_bundlewarp to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_correct_motion to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_denoise_nlmeans to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_denoise_lpca to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_denoise_mppca to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_denoise_patch2self to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_evac_plus to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fetch to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_csa to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_csd to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_dki to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_dti to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_dsi to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_ivim to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_mapmri to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_mask to 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/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_split to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_track to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_track_pft to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_slr to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_concatenate_tractograms to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_convert_tractogram to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_convert_tensors to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_nifti2pam to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_pam2nifti to 755 changing mode of /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_tensor2pam to 755 Successfully installed dipy-1.10.0 + '[' -d /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_align_affine /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_align_syn /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_apply_transform /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_buan_lmm /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_buan_profiles /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_buan_shapes /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_bundlewarp /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_concatenate_tractograms /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_convert_tensors /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_convert_tractogram /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_correct_motion /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_denoise_lpca /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_denoise_mppca /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_denoise_nlmeans /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_denoise_patch2self /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_evac_plus /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fetch /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_csa /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_csd /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_dki /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_dsi /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_dti /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_ivim /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_mapmri /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_gibbs_ringing /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_horizon /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_info /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_labelsbundles /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_mask /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_median_otsu /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_nifti2pam /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_pam2nifti /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_recobundles /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_reslice /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_sh_convert_mrtrix /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_slr /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_snr_in_cc /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_split /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_tensor2pam /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_track /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_track_pft /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_align_affine: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_align_syn: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_apply_transform: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_buan_lmm: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_buan_profiles: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_buan_shapes: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_bundlewarp: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_concatenate_tractograms: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_convert_tensors: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_convert_tractogram: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_correct_motion: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_denoise_lpca: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_denoise_mppca: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_denoise_nlmeans: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_denoise_patch2self: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_evac_plus: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fetch: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_csa: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_csd: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_dki: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_dsi: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_dti: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_ivim: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_fit_mapmri: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_gibbs_ringing: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_horizon: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_info: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_labelsbundles: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_mask: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_median_otsu: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_nifti2pam: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_pam2nifti: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_recobundles: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_reslice: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_sh_convert_mrtrix: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_slr: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_snr_in_cc: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_split: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_tensor2pam: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_track: updating /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/dipy_track_pft: updating + rm -rfv /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/python-dipy-1.10.0-build/python-dipy-1.10.0-4.fc42.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + site_dirs+=("/usr/lib64/python3.13/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.13/site-packages/dipy-1.10.0.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy-1.10.0.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT --record /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy-1.10.0.dist-info/RECORD --output /builddir/build/BUILD/python-dipy-1.10.0-build/python-dipy-1.10.0-4.fc42.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy-1.10.0.dist-info/RECORD removed '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy-1.10.0.dist-info/RECORD' + rm -fv /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy-1.10.0.dist-info/REQUESTED removed '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy-1.10.0.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-dipy-1.10.0-build/python-dipy-1.10.0-4.fc42.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-dipy-1.10.0-build/python-dipy-1.10.0-4.fc42.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-dipy-1.10.0-build/python-dipy-1.10.0-4.fc42.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/python-dipy-1.10.0-build/python-dipy-1.10.0-4.fc42.x86_64-pyproject-record --prefix /usr dipy + mkdir -p /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/share/doc/python-dipy-doc + mv /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/doc/dipy/examples /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/share/doc/python-dipy-doc/ + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.10.0-4.fc42 --unique-debug-suffix -1.10.0-4.fc42.x86_64 --unique-debug-src-base python-dipy-1.10.0-4.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0 find-debuginfo: starting Extracting debug info from 39 files DWARF-compressing 39 files sepdebugcrcfix: Updated 39 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/python-dipy-1.10.0-4.fc42.x86_64 cpio: .mesonpy-bliqs2mw/: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/align/bundlemin.cpython-313-x86_64-linux-gnu.so.p/bundlemin.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/align/crosscorr.cpython-313-x86_64-linux-gnu.so.p/crosscorr.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/align/expectmax.cpython-313-x86_64-linux-gnu.so.p/expectmax.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/align/parzenhist.cpython-313-x86_64-linux-gnu.so.p/parzenhist.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/align/sumsqdiff.cpython-313-x86_64-linux-gnu.so.p/sumsqdiff.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/align/transforms.cpython-313-x86_64-linux-gnu.so.p/transforms.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/align/vector_fields.cpython-313-x86_64-linux-gnu.so.p/vector_fields.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/core/interpolation.cpython-313-x86_64-linux-gnu.so.p/interpolation.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/denoise/denspeed.cpython-313-x86_64-linux-gnu.so.p/denspeed.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/denoise/enhancement_kernel.cpython-313-x86_64-linux-gnu.so.p/enhancement_kernel.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/denoise/nlmeans_block.cpython-313-x86_64-linux-gnu.so.p/nlmeans_block.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/denoise/pca_noise_estimate.cpython-313-x86_64-linux-gnu.so.p/pca_noise_estimate.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/denoise/shift_twist_convolution.cpython-313-x86_64-linux-gnu.so.p/shift_twist_convolution.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/direction/bootstrap_direction_getter.cpython-313-x86_64-linux-gnu.so.p/bootstrap_direction_getter.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/direction/closest_peak_direction_getter.cpython-313-x86_64-linux-gnu.so.p/closest_peak_direction_getter.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/direction/pmf.cpython-313-x86_64-linux-gnu.so.p/pmf.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/direction/probabilistic_direction_getter.cpython-313-x86_64-linux-gnu.so.p/probabilistic_direction_getter.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/direction/ptt_direction_getter.cpython-313-x86_64-linux-gnu.so.p/ptt_direction_getter.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/dpy_math.h: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/reconst/eudx_direction_getter.cpython-313-x86_64-linux-gnu.so.p/eudx_direction_getter.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/reconst/quick_squash.cpython-313-x86_64-linux-gnu.so.p/quick_squash.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/reconst/recspeed.cpython-313-x86_64-linux-gnu.so.p/recspeed.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/reconst/vec_val_sum.cpython-313-x86_64-linux-gnu.so.p/vec_val_sum.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/segment/clustering_algorithms.cpython-313-x86_64-linux-gnu.so.p/clustering_algorithms.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/segment/clusteringspeed.cpython-313-x86_64-linux-gnu.so.p/clusteringspeed.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/segment/cythonutils.cpython-313-x86_64-linux-gnu.so.p/cythonutils.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/segment/featurespeed.cpython-313-x86_64-linux-gnu.so.p/featurespeed.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/segment/metricspeed.cpython-313-x86_64-linux-gnu.so.p/metricspeed.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/segment/mrf.cpython-313-x86_64-linux-gnu.so.p/mrf.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/tracking/direction_getter.cpython-313-x86_64-linux-gnu.so.p/direction_getter.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/tracking/distances.cpython-313-x86_64-linux-gnu.so.p/distances.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/tracking/fbcmeasures.cpython-313-x86_64-linux-gnu.so.p/fbcmeasures.c: Cannot stat: No such file or directory cpio: .mesonpy-bliqs2mw/dipy/tracking/localtrack.cpython-313-x86_64-linux-gnu.so.p/localtrack.c: Cannot stat: No such file or directory cpio: 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/usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/lib64/python3.13/site-packages/dipy/align/streamwarp.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/dipy/align/tests/test_streamwarp.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/dipy/reconst/shm.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/dipy/workflows/stats.py is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below 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/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/share/doc/python-dipy-doc/examples/__pycache__/viz_slice.cpython-313.pyc: failed to process: pyc file with hash invalidation are not supported /builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/share/doc/python-dipy-doc/examples/__pycache__/workflow_creation.cpython-313.pyc: failed to process: pyc file with hash invalidation are not supported Scanned 115 directories and 1417 files, processed 473 inodes, 385 modified (72 replaced + 313 rewritten), 88 unsupported format, 0 errors Reading /builddir/build/BUILD/python-dipy-1.10.0-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.C23618 + umask 022 + cd /builddir/build/BUILD/python-dipy-1.10.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd dipy-1.10.0 + k='not test_peaksFromModelParallel' + k='not test_peaksFromModelParallel and not test_reconst_csa' + k='not test_peaksFromModelParallel and not test_reconst_csa and not test_reconst_rumba' + k='not test_peaksFromModelParallel and not test_reconst_csa and not test_reconst_rumba and not test_syn_registration' + k='not test_peaksFromModelParallel and not test_reconst_csa and not test_reconst_rumba and not test_syn_registration and not test_register_dwi_to_template' + k='not test_peaksFromModelParallel and not test_reconst_csa and not test_reconst_rumba and not test_syn_registration and not test_register_dwi_to_template and not test_affine_registration' + k='not test_peaksFromModelParallel and not test_reconst_csa and not test_reconst_rumba and not test_syn_registration and not test_register_dwi_to_template and not test_affine_registration and not test_single_transforms' + k='not test_peaksFromModelParallel and not test_reconst_csa and not test_reconst_rumba and not test_syn_registration and not test_register_dwi_to_template and not test_affine_registration and not test_single_transforms and not test_register_series' + k='not test_peaksFromModelParallel and not test_reconst_csa and not test_reconst_rumba and not test_syn_registration and not test_register_dwi_to_template and not test_affine_registration and not test_single_transforms and not test_register_series and not test_register_dwi_series_and_motion_correction' + k='not test_peaksFromModelParallel and not test_reconst_csa and not test_reconst_rumba and not test_syn_registration and not test_register_dwi_to_template and not test_affine_registration and not test_single_transforms and not test_register_series and not test_register_dwi_series_and_motion_correction and not test_streamline_registration' + k='not test_peaksFromModelParallel and not test_reconst_csa and not test_reconst_rumba and not test_syn_registration and not test_register_dwi_to_template and not test_affine_registration and not test_single_transforms and not test_register_series and not test_register_dwi_series_and_motion_correction and not test_streamline_registration and not test_register_dwi_series_multi_b0' + k='not test_peaksFromModelParallel and not test_reconst_csa and not test_reconst_rumba and not test_syn_registration and not test_register_dwi_to_template and not test_affine_registration and not test_single_transforms and not test_register_series and not test_register_dwi_series_and_motion_correction and not test_streamline_registration and not test_register_dwi_series_multi_b0 and not test_ptt_tracking' + k='not test_peaksFromModelParallel and not test_reconst_csa and not test_reconst_rumba and not test_syn_registration and not test_register_dwi_to_template and not test_affine_registration and not test_single_transforms and not test_register_series and not test_register_dwi_series_and_motion_correction and not test_streamline_registration and not test_register_dwi_series_multi_b0 and not test_ptt_tracking and not test_io_fetch' + k='not test_peaksFromModelParallel and not test_reconst_csa and not test_reconst_rumba and not test_syn_registration and not test_register_dwi_to_template and not test_affine_registration and not test_single_transforms and not test_register_series and not test_register_dwi_series_and_motion_correction and not test_streamline_registration and not test_register_dwi_series_multi_b0 and not test_ptt_tracking and not test_io_fetch and not test_concatenate' + k='not test_peaksFromModelParallel and not test_reconst_csa and not test_reconst_rumba and not test_syn_registration and not test_register_dwi_to_template and not test_affine_registration and not test_single_transforms and not test_register_series and not test_register_dwi_series_and_motion_correction and not test_streamline_registration and not test_register_dwi_series_multi_b0 and not test_ptt_tracking and not test_io_fetch and not test_concatenate and not test_io_info' + k='not test_peaksFromModelParallel and not test_reconst_csa and not test_reconst_rumba and not test_syn_registration and not test_register_dwi_to_template and not test_affine_registration and not test_single_transforms and not test_register_series and not test_register_dwi_series_and_motion_correction and not test_streamline_registration and not test_register_dwi_series_multi_b0 and not test_ptt_tracking and not test_io_fetch and not test_concatenate and not test_io_info and not test_concatenate_flow' + k='not test_peaksFromModelParallel and not test_reconst_csa and not test_reconst_rumba and not test_syn_registration and not test_register_dwi_to_template and not test_affine_registration and not test_single_transforms and not test_register_series and not test_register_dwi_series_and_motion_correction and not test_streamline_registration and not test_register_dwi_series_multi_b0 and not test_ptt_tracking and not test_io_fetch and not test_concatenate and not test_io_info and not test_concatenate_flow and not test_convert_tractogram_flow' + k='not test_peaksFromModelParallel and not test_reconst_csa and not test_reconst_rumba and not test_syn_registration and not test_register_dwi_to_template and not test_affine_registration and not test_single_transforms and not test_register_series and not test_register_dwi_series_and_motion_correction and not test_streamline_registration and not test_register_dwi_series_multi_b0 and not test_ptt_tracking and not test_io_fetch and not test_concatenate and not test_io_info and not test_concatenate_flow and not test_convert_tractogram_flow and not test_shore_fitting_no_constrain_e0' + mkdir test + pushd test ~/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/test ~/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0 + ln -s ../pyproject.toml . + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest -c pyproject.toml -v --pyargs dipy --ignore=dipy/io/tests/test_stateful_tractogram.py --ignore=dipy/io/tests/test_streamline.py --ignore=dipy/io/tests/test_utils.py '-k not test_peaksFromModelParallel and not test_reconst_csa and not test_reconst_rumba and not test_syn_registration and not test_register_dwi_to_template and not test_affine_registration and not test_single_transforms and not test_register_series and not test_register_dwi_series_and_motion_correction and not test_streamline_registration and not test_register_dwi_series_multi_b0 and not test_ptt_tracking and not test_io_fetch and not test_concatenate and not test_io_info and not test_concatenate_flow and not test_convert_tractogram_flow and not test_shore_fitting_no_constrain_e0' ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/python-dipy-1.10.0-build/dipy-1.10.0/test configfile: pyproject.toml collecting ... collected 126 items / 127 errors ==================================== ERRORS ==================================== ___________________ ERROR collecting align/tests/test_api.py ___________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/tests/test_api.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ________________ ERROR collecting align/tests/test_crosscorr.py ________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/tests/test_crosscorr.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ________________ ERROR collecting align/tests/test_expectmax.py ________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/tests/test_expectmax.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ________________ ERROR collecting align/tests/test_imaffine.py _________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/tests/test_imaffine.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting align/tests/test_imwarp.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/tests/test_imwarp.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting align/tests/test_metrics.py _________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/tests/test_metrics.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _______________ ERROR collecting align/tests/test_parzenhist.py ________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/tests/test_parzenhist.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting align/tests/test_reslice.py _________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/tests/test_reslice.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _______________ ERROR collecting align/tests/test_scalespace.py ________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/tests/test_scalespace.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ______________ ERROR collecting align/tests/test_streamlinear.py _______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/tests/test_streamlinear.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _______________ ERROR collecting align/tests/test_streamwarp.py ________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/tests/test_streamwarp.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ________________ ERROR collecting align/tests/test_sumsqdiff.py ________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/tests/test_sumsqdiff.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _______________ ERROR collecting align/tests/test_transforms.py ________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/tests/test_transforms.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ______________ ERROR collecting align/tests/test_vector_fields.py ______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/tests/test_vector_fields.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _____________ ERROR collecting align/tests/test_whole_brain_slr.py _____________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/tests/test_whole_brain_slr.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ________________ ERROR collecting core/tests/test_gradients.py _________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_gradients.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_gradients.py:8: in from dipy.core.gradients import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_gradients.py", line 8, in from dipy.core.gradients import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ______________ ERROR collecting core/tests/test_interpolation.py _______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_interpolation.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_interpolation.py:5: in from scipy.ndimage import map_coordinates /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_interpolation.py", line 5, in from scipy.ndimage import map_coordinates File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting core/tests/test_optimize.py _________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_optimize.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_optimize.py:3: in import scipy.sparse as sps /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_optimize.py", line 3, in import scipy.sparse as sps File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ___________________ ERROR collecting core/tests/test_rng.py ____________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_rng.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_rng.py:4: in from scipy.stats import chisquare /usr/lib64/python3.13/site-packages/scipy/stats/__init__.py:610: in from ._stats_py import * /usr/lib64/python3.13/site-packages/scipy/stats/_stats_py.py:37: in from scipy import sparse /usr/lib64/python3.13/site-packages/scipy/__init__.py:134: in __getattr__ return _importlib.import_module(f'scipy.{name}') /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_rng.py", line 4, in from scipy.stats import chisquare File "/usr/lib64/python3.13/site-packages/scipy/stats/__init__.py", line 610, in from ._stats_py import * File "/usr/lib64/python3.13/site-packages/scipy/stats/_stats_py.py", line 37, in from scipy import sparse File "/usr/lib64/python3.13/site-packages/scipy/__init__.py", line 134, in __getattr__ return _importlib.import_module(f'scipy.{name}') File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. __________________ ERROR collecting core/tests/test_sphere.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_sphere.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_sphere.py:8: in from dipy.core.sphere import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/sphere.py:4: in from scipy import optimize /usr/lib64/python3.13/site-packages/scipy/__init__.py:134: in __getattr__ return _importlib.import_module(f'scipy.{name}') /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) /usr/lib64/python3.13/site-packages/scipy/optimize/__init__.py:414: in from ._optimize import * /usr/lib64/python3.13/site-packages/scipy/optimize/_optimize.py:35: in from scipy.linalg import cholesky, issymmetric, LinAlgError /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_sphere.py", line 8, in from dipy.core.sphere import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/sphere.py", line 4, in from scipy import optimize File "/usr/lib64/python3.13/site-packages/scipy/__init__.py", line 134, in __getattr__ return _importlib.import_module(f'scipy.{name}') File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib64/python3.13/site-packages/scipy/optimize/__init__.py", line 414, in from ._optimize import * File "/usr/lib64/python3.13/site-packages/scipy/optimize/_optimize.py", line 35, in from scipy.linalg import cholesky, issymmetric, LinAlgError File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ___________ ERROR collecting core/tests/test_subdivide_octahedron.py ___________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_subdivide_octahedron.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_subdivide_octahedron.py:3: in from dipy.core.subdivide_octahedron import create_unit_sphere ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/subdivide_octahedron.py:14: in from dipy.core.sphere import HemiSphere, unit_octahedron ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/sphere.py:4: in from scipy import optimize /usr/lib64/python3.13/site-packages/scipy/__init__.py:134: in __getattr__ return _importlib.import_module(f'scipy.{name}') /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) /usr/lib64/python3.13/site-packages/scipy/optimize/__init__.py:414: in from ._optimize import * /usr/lib64/python3.13/site-packages/scipy/optimize/_optimize.py:35: in from scipy.linalg import cholesky, issymmetric, LinAlgError /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/tests/test_subdivide_octahedron.py", line 3, in from dipy.core.subdivide_octahedron import create_unit_sphere File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/subdivide_octahedron.py", line 14, in from dipy.core.sphere import HemiSphere, unit_octahedron File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/sphere.py", line 4, in from scipy import optimize File "/usr/lib64/python3.13/site-packages/scipy/__init__.py", line 134, in __getattr__ return _importlib.import_module(f'scipy.{name}') File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib64/python3.13/site-packages/scipy/optimize/__init__.py", line 414, in from ._optimize import * File "/usr/lib64/python3.13/site-packages/scipy/optimize/_optimize.py", line 35, in from scipy.linalg import cholesky, issymmetric, LinAlgError File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ___________________ ERROR collecting data/tests/test_data.py ___________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/tests/test_data.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting data/tests/test_fetcher.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/tests/test_fetcher.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting denoise/tests/test_ascm.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/tests/test_ascm.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/tests/test_ascm.py:5: in import dipy.data as dpd ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/tests/test_ascm.py", line 5, in import dipy.data as dpd File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ________________ ERROR collecting denoise/tests/test_denoise.py ________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/tests/test_denoise.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/tests/test_denoise.py:1: in import dipy.data as dpd ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/tests/test_denoise.py", line 1, in import dipy.data as dpd File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting denoise/tests/test_gibbs.py _________________ ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/tests/test_gibbs.py:4: in from dipy.denoise.gibbs import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/gibbs.py:5: in import scipy.fft /usr/lib64/python3.13/site-packages/scipy/fft/__init__.py:91: in from ._fftlog import fht, ifht, fhtoffset /usr/lib64/python3.13/site-packages/scipy/fft/_fftlog.py:10: in from ._fftlog_backend import fhtoffset /usr/lib64/python3.13/site-packages/scipy/fft/_fftlog_backend.py:4: in from ..special import loggamma, poch /usr/lib64/python3.13/site-packages/scipy/special/__init__.py:807: in from . import _ufuncs scipy/special/_ufuncs.pyx:1: in init scipy.special._ufuncs ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject ________________ ERROR collecting denoise/tests/test_kernel.py _________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/tests/test_kernel.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/tests/test_kernel.py:6: in from dipy.core.sphere import Sphere ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/sphere.py:4: in from scipy import optimize /usr/lib64/python3.13/site-packages/scipy/__init__.py:134: in __getattr__ return _importlib.import_module(f'scipy.{name}') /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) /usr/lib64/python3.13/site-packages/scipy/optimize/__init__.py:414: in from ._optimize import * /usr/lib64/python3.13/site-packages/scipy/optimize/_optimize.py:35: in from scipy.linalg import cholesky, issymmetric, LinAlgError /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/tests/test_kernel.py", line 6, in from dipy.core.sphere import Sphere File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/sphere.py", line 4, in from scipy import optimize File "/usr/lib64/python3.13/site-packages/scipy/__init__.py", line 134, in __getattr__ return _importlib.import_module(f'scipy.{name}') File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib64/python3.13/site-packages/scipy/optimize/__init__.py", line 414, in from ._optimize import * File "/usr/lib64/python3.13/site-packages/scipy/optimize/_optimize.py", line 35, in from scipy.linalg import cholesky, issymmetric, LinAlgError File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting denoise/tests/test_lpca.py __________________ ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/tests/test_lpca.py:11: in import scipy.special as sps /usr/lib64/python3.13/site-packages/scipy/special/__init__.py:807: in from . import _ufuncs scipy/special/_ufuncs.pyx:1: in init scipy.special._ufuncs ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject ____________ ERROR collecting denoise/tests/test_noise_estimate.py _____________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/tests/test_noise_estimate.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/tests/test_noise_estimate.py:10: in import dipy.core.gradients as dpg ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/tests/test_noise_estimate.py", line 10, in import dipy.core.gradients as dpg File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ______________ ERROR collecting denoise/tests/test_patch2self.py _______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/tests/test_patch2self.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/tests/test_patch2self.py:7: in from dipy.core.gradients import generate_bvecs, gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/denoise/tests/test_patch2self.py", line 7, in from dipy.core.gradients import generate_bvecs, gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _____ ERROR collecting direction/tests/test_bootstrap_direction_getter.py ______ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/direction/__init__.py:1: in from .bootstrap_direction_getter import BootDirectionGetter bootstrap_direction_getter.pyx:1: in init dipy.direction.bootstrap_direction_getter ??? direction_getter.pyx:1: in init dipy.tracking.direction_getter ??? stopping_criterion.pyx:1: in init dipy.tracking.stopping_criterion ??? interpolation.pyx:11: in init dipy.core.interpolation ??? /usr/lib64/python3.13/site-packages/scipy/interpolate/__init__.py:167: in from ._interpolate import * /usr/lib64/python3.13/site-packages/scipy/interpolate/_interpolate.py:8: in import scipy.special as spec /usr/lib64/python3.13/site-packages/scipy/special/__init__.py:807: in from . import _ufuncs scipy/special/_ufuncs.pyx:1: in init scipy.special._ufuncs ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject ________________ ERROR collecting direction/tests/test_peaks.py ________________ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/direction/__init__.py:1: in from .bootstrap_direction_getter import BootDirectionGetter bootstrap_direction_getter.pyx:1: in init dipy.direction.bootstrap_direction_getter ??? direction_getter.pyx:1: in init dipy.tracking.direction_getter ??? stopping_criterion.pyx:1: in init dipy.tracking.stopping_criterion ??? interpolation.pyx:11: in init dipy.core.interpolation ??? /usr/lib64/python3.13/site-packages/scipy/interpolate/__init__.py:167: in from ._interpolate import * /usr/lib64/python3.13/site-packages/scipy/interpolate/_interpolate.py:8: in import scipy.special as spec /usr/lib64/python3.13/site-packages/scipy/special/__init__.py:807: in from . import _ufuncs scipy/special/_ufuncs.pyx:1: in init scipy.special._ufuncs ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject _________________ ERROR collecting direction/tests/test_pmf.py _________________ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/direction/__init__.py:1: in from .bootstrap_direction_getter import BootDirectionGetter bootstrap_direction_getter.pyx:1: in init dipy.direction.bootstrap_direction_getter ??? direction_getter.pyx:1: in init dipy.tracking.direction_getter ??? stopping_criterion.pyx:1: in init dipy.tracking.stopping_criterion ??? interpolation.pyx:11: in init dipy.core.interpolation ??? /usr/lib64/python3.13/site-packages/scipy/interpolate/__init__.py:167: in from ._interpolate import * /usr/lib64/python3.13/site-packages/scipy/interpolate/_interpolate.py:8: in import scipy.special as spec /usr/lib64/python3.13/site-packages/scipy/special/__init__.py:807: in from . import _ufuncs scipy/special/_ufuncs.pyx:1: in init scipy.special._ufuncs ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject ________ ERROR collecting direction/tests/test_prob_direction_getter.py ________ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/direction/__init__.py:1: in from .bootstrap_direction_getter import BootDirectionGetter bootstrap_direction_getter.pyx:1: in init dipy.direction.bootstrap_direction_getter ??? direction_getter.pyx:1: in init dipy.tracking.direction_getter ??? stopping_criterion.pyx:1: in init dipy.tracking.stopping_criterion ??? interpolation.pyx:11: in init dipy.core.interpolation ??? /usr/lib64/python3.13/site-packages/scipy/interpolate/__init__.py:167: in from ._interpolate import * /usr/lib64/python3.13/site-packages/scipy/interpolate/_interpolate.py:8: in import scipy.special as spec /usr/lib64/python3.13/site-packages/scipy/special/__init__.py:807: in from . import _ufuncs scipy/special/_ufuncs.pyx:1: in init scipy.special._ufuncs ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject ________ ERROR collecting direction/tests/test_ptt_direction_getter.py _________ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/direction/__init__.py:1: in from .bootstrap_direction_getter import BootDirectionGetter bootstrap_direction_getter.pyx:1: in init dipy.direction.bootstrap_direction_getter ??? direction_getter.pyx:1: in init dipy.tracking.direction_getter ??? stopping_criterion.pyx:1: in init dipy.tracking.stopping_criterion ??? interpolation.pyx:11: in init dipy.core.interpolation ??? /usr/lib64/python3.13/site-packages/scipy/interpolate/__init__.py:167: in from ._interpolate import * /usr/lib64/python3.13/site-packages/scipy/interpolate/_interpolate.py:8: in import scipy.special as spec /usr/lib64/python3.13/site-packages/scipy/special/__init__.py:807: in from . import _ufuncs scipy/special/_ufuncs.pyx:1: in init scipy.special._ufuncs ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject ____________________ ERROR collecting io/tests/test_dpy.py _____________________ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/__init__.py:4: in from .dpy import Dpy ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/dpy.py:11: in import h5py /usr/lib64/python3.13/site-packages/h5py/__init__.py:45: in from ._conv import register_converters as _register_converters, \ h5py/_conv.pyx:1: in init h5py._conv ??? h5py/h5r.pyx:1: in init h5py.h5r ??? h5py/h5p.pyx:1: in init h5py.h5p ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject _____________________ ERROR collecting io/tests/test_io.py _____________________ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/__init__.py:4: in from .dpy import Dpy ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/dpy.py:11: in import h5py /usr/lib64/python3.13/site-packages/h5py/__init__.py:45: in from ._conv import register_converters as _register_converters, \ h5py/_conv.pyx:1: in init h5py._conv ??? h5py/h5r.pyx:1: in init h5py.h5r ??? h5py/h5p.pyx:1: in init h5py.h5p ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject ________________ ERROR collecting io/tests/test_io_gradients.py ________________ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/__init__.py:4: in from .dpy import Dpy ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/dpy.py:11: in import h5py /usr/lib64/python3.13/site-packages/h5py/__init__.py:45: in from ._conv import register_converters as _register_converters, \ h5py/_conv.pyx:1: in init h5py._conv ??? h5py/h5r.pyx:1: in init h5py.h5r ??? h5py/h5p.pyx:1: in init h5py.h5p ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject __________________ ERROR collecting io/tests/test_io_peaks.py __________________ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/__init__.py:4: in from .dpy import Dpy ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/dpy.py:11: in import h5py /usr/lib64/python3.13/site-packages/h5py/__init__.py:45: in from ._conv import register_converters as _register_converters, \ h5py/_conv.pyx:1: in init h5py._conv ??? h5py/h5r.pyx:1: in init h5py.h5r ??? h5py/h5p.pyx:1: in init h5py.h5p ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject ____________ ERROR collecting io/tests/test_stateful_tractogram.py _____________ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/__init__.py:4: in from .dpy import Dpy ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/dpy.py:11: in import h5py /usr/lib64/python3.13/site-packages/h5py/__init__.py:45: in from ._conv import register_converters as _register_converters, \ h5py/_conv.pyx:1: in init h5py._conv ??? h5py/h5r.pyx:1: in init h5py.h5r ??? h5py/h5p.pyx:1: in init h5py.h5p ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject _________________ ERROR collecting io/tests/test_streamline.py _________________ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/__init__.py:4: in from .dpy import Dpy ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/dpy.py:11: in import h5py /usr/lib64/python3.13/site-packages/h5py/__init__.py:45: in from ._conv import register_converters as _register_converters, \ h5py/_conv.pyx:1: in init h5py._conv ??? h5py/h5r.pyx:1: in init h5py.h5r ??? h5py/h5p.pyx:1: in init h5py.h5p ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject ___________________ ERROR collecting io/tests/test_utils.py ____________________ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/__init__.py:4: in from .dpy import Dpy ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/dpy.py:11: in import h5py /usr/lib64/python3.13/site-packages/h5py/__init__.py:45: in from ._conv import register_converters as _register_converters, \ h5py/_conv.pyx:1: in init h5py._conv ??? h5py/h5r.pyx:1: in init h5py.h5r ??? h5py/h5p.pyx:1: in init h5py.h5p ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject _______________ ERROR collecting nn/tests/test_cnn_1denoiser.py ________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/tests/test_cnn_1denoiser.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py:79: in __all__ = _load_backend() ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py:20: in _load_backend import dipy.nn.torch.evac as evac_module ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/torch/evac.py:10: in from dipy.align.reslice import reslice ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py", line 79, in __all__ = _load_backend() File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py", line 20, in _load_backend import dipy.nn.torch.evac as evac_module File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/torch/evac.py", line 10, in from dipy.align.reslice import reslice File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ___________________ ERROR collecting nn/tests/test_deepn4.py ___________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/tests/test_deepn4.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py:79: in __all__ = _load_backend() ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py:20: in _load_backend import dipy.nn.torch.evac as evac_module ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/torch/evac.py:10: in from dipy.align.reslice import reslice ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py", line 79, in __all__ = _load_backend() File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py", line 20, in _load_backend import dipy.nn.torch.evac as evac_module File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/torch/evac.py", line 10, in from dipy.align.reslice import reslice File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ____________________ ERROR collecting nn/tests/test_evac.py ____________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/tests/test_evac.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py:79: in __all__ = _load_backend() ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py:20: in _load_backend import dipy.nn.torch.evac as evac_module ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/torch/evac.py:10: in from dipy.align.reslice import reslice ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py", line 79, in __all__ = _load_backend() File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py", line 20, in _load_backend import dipy.nn.torch.evac as evac_module File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/torch/evac.py", line 10, in from dipy.align.reslice import reslice File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ________________ ERROR collecting nn/tests/test_histo_resdnn.py ________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/tests/test_histo_resdnn.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py:79: in __all__ = _load_backend() ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py:20: in _load_backend import dipy.nn.torch.evac as evac_module ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/torch/evac.py:10: in from dipy.align.reslice import reslice ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py", line 79, in __all__ = _load_backend() File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py", line 20, in _load_backend import dipy.nn.torch.evac as evac_module File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/torch/evac.py", line 10, in from dipy.align.reslice import reslice File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ___________________ ERROR collecting nn/tests/test_synb0.py ____________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/tests/test_synb0.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py:79: in __all__ = _load_backend() ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py:20: in _load_backend import dipy.nn.torch.evac as evac_module ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/torch/evac.py:10: in from dipy.align.reslice import reslice ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py", line 79, in __all__ = _load_backend() File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py", line 20, in _load_backend import dipy.nn.torch.evac as evac_module File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/torch/evac.py", line 10, in from dipy.align.reslice import reslice File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _____________________ ERROR collecting nn/tests/test_tf.py _____________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/tests/test_tf.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py:79: in __all__ = _load_backend() ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py:20: in _load_backend import dipy.nn.torch.evac as evac_module ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/torch/evac.py:10: in from dipy.align.reslice import reslice ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py", line 79, in __all__ = _load_backend() File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py", line 20, in _load_backend import dipy.nn.torch.evac as evac_module File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/torch/evac.py", line 10, in from dipy.align.reslice import reslice File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ___________________ ERROR collecting nn/tests/test_utils.py ____________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/tests/test_utils.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py:79: in __all__ = _load_backend() ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py:20: in _load_backend import dipy.nn.torch.evac as evac_module ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/torch/evac.py:10: in from dipy.align.reslice import reslice ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py", line 79, in __all__ = _load_backend() File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/__init__.py", line 20, in _load_backend import dipy.nn.torch.evac as evac_module File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/nn/torch/evac.py", line 10, in from dipy.align.reslice import reslice File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ________________ ERROR collecting reconst/tests/test_bingham.py ________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_bingham.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_bingham.py:8: in from dipy.data import get_sphere ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_bingham.py", line 8, in from dipy.data import get_sphere File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting reconst/tests/test_cache.py _________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_cache.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_cache.py:3: in from dipy.core.sphere import Sphere ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/sphere.py:4: in from scipy import optimize /usr/lib64/python3.13/site-packages/scipy/__init__.py:134: in __getattr__ return _importlib.import_module(f'scipy.{name}') /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) /usr/lib64/python3.13/site-packages/scipy/optimize/__init__.py:414: in from ._optimize import * /usr/lib64/python3.13/site-packages/scipy/optimize/_optimize.py:35: in from scipy.linalg import cholesky, issymmetric, LinAlgError /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_cache.py", line 3, in from dipy.core.sphere import Sphere File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/sphere.py", line 4, in from scipy import optimize File "/usr/lib64/python3.13/site-packages/scipy/__init__.py", line 134, in __getattr__ return _importlib.import_module(f'scipy.{name}') File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib64/python3.13/site-packages/scipy/optimize/__init__.py", line 414, in from ._optimize import * File "/usr/lib64/python3.13/site-packages/scipy/optimize/_optimize.py", line 35, in from scipy.linalg import cholesky, issymmetric, LinAlgError File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ___________ ERROR collecting reconst/tests/test_cross_validation.py ____________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_cross_validation.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_cross_validation.py:8: in import dipy.core.gradients as gt ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_cross_validation.py", line 8, in import dipy.core.gradients as gt File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _______________ ERROR collecting reconst/tests/test_csdeconv.py ________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_csdeconv.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_csdeconv.py:13: in from dipy.core.gradients import gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_csdeconv.py", line 13, in from dipy.core.gradients import gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. __________________ ERROR collecting reconst/tests/test_cti.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_cti.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_cti.py:6: in from dipy.core.gradients import gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_cti.py", line 6, in from dipy.core.gradients import gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. __________________ ERROR collecting reconst/tests/test_dki.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dki.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dki.py:15: in from dipy.core.gradients import gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dki.py", line 15, in from dipy.core.gradients import gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _______________ ERROR collecting reconst/tests/test_dki_micro.py _______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dki_micro.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dki_micro.py:15: in from dipy.core.gradients import gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dki_micro.py", line 15, in from dipy.core.gradients import gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. __________________ ERROR collecting reconst/tests/test_dsi.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dsi.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dsi.py:4: in from dipy.core.gradients import gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dsi.py", line 4, in from dipy.core.gradients import gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ______________ ERROR collecting reconst/tests/test_dsi_deconv.py _______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dsi_deconv.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dsi_deconv.py:4: in from dipy.core.gradients import gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dsi_deconv.py", line 4, in from dipy.core.gradients import gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ______________ ERROR collecting reconst/tests/test_dsi_metrics.py ______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dsi_metrics.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dsi_metrics.py:4: in from dipy.core.gradients import gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dsi_metrics.py", line 4, in from dipy.core.gradients import gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. __________________ ERROR collecting reconst/tests/test_dti.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dti.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dti.py:6: in import dipy.core.gradients as grad ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_dti.py", line 6, in import dipy.core.gradients as grad File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ________________ ERROR collecting reconst/tests/test_eudx_dg.py ________________ ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_eudx_dg.py:6: in from dipy.direction.peaks import default_sphere, peaks_from_model ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/direction/__init__.py:1: in from .bootstrap_direction_getter import BootDirectionGetter bootstrap_direction_getter.pyx:1: in init dipy.direction.bootstrap_direction_getter ??? direction_getter.pyx:1: in init dipy.tracking.direction_getter ??? stopping_criterion.pyx:1: in init dipy.tracking.stopping_criterion ??? interpolation.pyx:11: in init dipy.core.interpolation ??? /usr/lib64/python3.13/site-packages/scipy/interpolate/__init__.py:167: in from ._interpolate import * /usr/lib64/python3.13/site-packages/scipy/interpolate/_interpolate.py:8: in import scipy.special as spec /usr/lib64/python3.13/site-packages/scipy/special/__init__.py:807: in from . import _ufuncs scipy/special/_ufuncs.pyx:1: in init scipy.special._ufuncs ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject _______________ ERROR collecting reconst/tests/test_forecast.py ________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_forecast.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_forecast.py:10: in from dipy.data import default_sphere, get_3shell_gtab, get_sphere ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_forecast.py", line 10, in from dipy.data import default_sphere, get_3shell_gtab, get_sphere File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting reconst/tests/test_fwdti.py _________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_fwdti.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_fwdti.py:6: in from dipy.core.gradients import gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_fwdti.py", line 6, in from dipy.core.gradients import gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. __________________ ERROR collecting reconst/tests/test_gqi.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_gqi.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_gqi.py:4: in from dipy.core.gradients import gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_gqi.py", line 4, in from dipy.core.gradients import gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting reconst/tests/test_ivim.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_ivim.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_ivim.py:26: in from dipy.core.gradients import generate_bvecs, gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_ivim.py", line 26, in from dipy.core.gradients import generate_bvecs, gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ________________ ERROR collecting reconst/tests/test_mapmri.py _________________ ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_mapmri.py:15: in import scipy.integrate as integrate /usr/lib64/python3.13/site-packages/scipy/integrate/__init__.py:94: in from ._quadrature import * /usr/lib64/python3.13/site-packages/scipy/integrate/_quadrature.py:9: in from scipy.special import roots_legendre /usr/lib64/python3.13/site-packages/scipy/special/__init__.py:807: in from . import _ufuncs scipy/special/_ufuncs.pyx:1: in init scipy.special._ufuncs ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject _________________ ERROR collecting reconst/tests/test_mcsd.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_mcsd.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_mcsd.py:7: in from dipy.core.gradients import GradientTable ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_mcsd.py", line 7, in from dipy.core.gradients import GradientTable File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting reconst/tests/test_msdki.py _________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_msdki.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_msdki.py:13: in from dipy.core.gradients import gradient_table, round_bvals, unique_bvals_magnitude ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_msdki.py", line 13, in from dipy.core.gradients import gradient_table, round_bvals, unique_bvals_magnitude File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ______________ ERROR collecting reconst/tests/test_multi_voxel.py ______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_multi_voxel.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_multi_voxel.py:6: in from dipy.core.sphere import unit_icosahedron ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/sphere.py:4: in from scipy import optimize /usr/lib64/python3.13/site-packages/scipy/__init__.py:134: in __getattr__ return _importlib.import_module(f'scipy.{name}') /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) /usr/lib64/python3.13/site-packages/scipy/optimize/__init__.py:414: in from ._optimize import * /usr/lib64/python3.13/site-packages/scipy/optimize/_optimize.py:35: in from scipy.linalg import cholesky, issymmetric, LinAlgError /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_multi_voxel.py", line 6, in from dipy.core.sphere import unit_icosahedron File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/sphere.py", line 4, in from scipy import optimize File "/usr/lib64/python3.13/site-packages/scipy/__init__.py", line 134, in __getattr__ return _importlib.import_module(f'scipy.{name}') File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib64/python3.13/site-packages/scipy/optimize/__init__.py", line 414, in from ._optimize import * File "/usr/lib64/python3.13/site-packages/scipy/optimize/_optimize.py", line 35, in from scipy.linalg import cholesky, issymmetric, LinAlgError File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. __________________ ERROR collecting reconst/tests/test_odf.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_odf.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_odf.py:4: in from dipy.core.gradients import GradientTable, gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_odf.py", line 4, in from dipy.core.gradients import GradientTable, gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _____________ ERROR collecting reconst/tests/test_peak_finding.py ______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_peak_finding.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_peak_finding.py:4: in from dipy.core.sphere import HemiSphere, unique_edges ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/sphere.py:4: in from scipy import optimize /usr/lib64/python3.13/site-packages/scipy/__init__.py:134: in __getattr__ return _importlib.import_module(f'scipy.{name}') /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) /usr/lib64/python3.13/site-packages/scipy/optimize/__init__.py:414: in from ._optimize import * /usr/lib64/python3.13/site-packages/scipy/optimize/_optimize.py:35: in from scipy.linalg import cholesky, issymmetric, LinAlgError /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_peak_finding.py", line 4, in from dipy.core.sphere import HemiSphere, unique_edges File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/sphere.py", line 4, in from scipy import optimize File "/usr/lib64/python3.13/site-packages/scipy/__init__.py", line 134, in __getattr__ return _importlib.import_module(f'scipy.{name}') File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib64/python3.13/site-packages/scipy/optimize/__init__.py", line 414, in from ._optimize import * File "/usr/lib64/python3.13/site-packages/scipy/optimize/_optimize.py", line 35, in from scipy.linalg import cholesky, issymmetric, LinAlgError File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ________________ ERROR collecting reconst/tests/test_qtdmri.py _________________ ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_qtdmri.py:12: in import scipy.integrate as integrate /usr/lib64/python3.13/site-packages/scipy/integrate/__init__.py:94: in from ._quadrature import * /usr/lib64/python3.13/site-packages/scipy/integrate/_quadrature.py:9: in from scipy.special import roots_legendre /usr/lib64/python3.13/site-packages/scipy/special/__init__.py:807: in from . import _ufuncs scipy/special/_ufuncs.pyx:1: in init scipy.special._ufuncs ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject __________________ ERROR collecting reconst/tests/test_qti.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_qti.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_qti.py:6: in from dipy.core.gradients import gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_qti.py", line 6, in from dipy.core.gradients import gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting reconst/tests/test_rumba.py _________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_rumba.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_rumba.py:14: in from dipy.core.gradients import gradient_table, unique_bvals_tolerance ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_rumba.py", line 14, in from dipy.core.gradients import gradient_table, unique_bvals_tolerance File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. __________________ ERROR collecting reconst/tests/test_sfm.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_sfm.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_sfm.py:7: in import dipy.core.gradients as grad ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_sfm.py", line 7, in import dipy.core.gradients as grad File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. __________________ ERROR collecting reconst/tests/test_shm.py __________________ ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_shm.py:14: in from scipy.special import sph_harm as sph_harm_sp /usr/lib64/python3.13/site-packages/scipy/special/__init__.py:807: in from . import _ufuncs scipy/special/_ufuncs.pyx:1: in init scipy.special._ufuncs ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject _________________ ERROR collecting reconst/tests/test_shore.py _________________ ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_shore.py:8: in from scipy.special import gamma, genlaguerre /usr/lib64/python3.13/site-packages/scipy/special/__init__.py:807: in from . import _ufuncs scipy/special/_ufuncs.pyx:1: in init scipy.special._ufuncs ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject _____________ ERROR collecting reconst/tests/test_shore_metrics.py _____________ ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_shore_metrics.py:5: in from scipy.special import genlaguerre /usr/lib64/python3.13/site-packages/scipy/special/__init__.py:807: in from . import _ufuncs scipy/special/_ufuncs.pyx:1: in init scipy.special._ufuncs ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject _______________ ERROR collecting reconst/tests/test_shore_odf.py _______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_shore_odf.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_shore_odf.py:7: in from dipy.core.subdivide_octahedron import create_unit_sphere ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/subdivide_octahedron.py:14: in from dipy.core.sphere import HemiSphere, unit_octahedron ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/sphere.py:4: in from scipy import optimize /usr/lib64/python3.13/site-packages/scipy/__init__.py:134: in __getattr__ return _importlib.import_module(f'scipy.{name}') /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) /usr/lib64/python3.13/site-packages/scipy/optimize/__init__.py:414: in from ._optimize import * /usr/lib64/python3.13/site-packages/scipy/optimize/_optimize.py:35: in from scipy.linalg import cholesky, issymmetric, LinAlgError /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_shore_odf.py", line 7, in from dipy.core.subdivide_octahedron import create_unit_sphere File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/subdivide_octahedron.py", line 14, in from dipy.core.sphere import HemiSphere, unit_octahedron File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/sphere.py", line 4, in from scipy import optimize File "/usr/lib64/python3.13/site-packages/scipy/__init__.py", line 134, in __getattr__ return _importlib.import_module(f'scipy.{name}') File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib64/python3.13/site-packages/scipy/optimize/__init__.py", line 414, in from ._optimize import * File "/usr/lib64/python3.13/site-packages/scipy/optimize/_optimize.py", line 35, in from scipy.linalg import cholesky, issymmetric, LinAlgError File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ____________ ERROR collecting reconst/tests/test_weights_method.py _____________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_weights_method.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_weights_method.py:10: in import dipy.core.gradients as grad ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/reconst/tests/test_weights_method.py", line 10, in import dipy.core.gradients as grad File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ________________ ERROR collecting segment/tests/test_bundles.py ________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_bundles.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_bundles.py:6: in from dipy.data import get_fnames ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_bundles.py", line 6, in from dipy.data import get_fnames File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ______________ ERROR collecting segment/tests/test_clustering.py _______________ ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_clustering.py:7: in from dipy.segment.clustering import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/clustering.py:15: in from dipy.tracking.streamline import nbytes, set_number_of_points ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/streamline.py:8: in from scipy.spatial.distance import cdist /usr/lib64/python3.13/site-packages/scipy/spatial/__init__.py:110: in from ._kdtree import * /usr/lib64/python3.13/site-packages/scipy/spatial/_kdtree.py:4: in from ._ckdtree import cKDTree, cKDTreeNode _ckdtree.pyx:1: in init scipy.spatial._ckdtree ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject __________________ ERROR collecting segment/tests/test_fss.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_fss.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_fss.py:4: in from dipy.data import get_fnames ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_fss.py", line 4, in from dipy.data import get_fnames File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting segment/tests/test_mask.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_mask.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_mask.py:5: in from scipy.ndimage import binary_dilation, generate_binary_structure, median_filter /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_mask.py", line 5, in from scipy.ndimage import binary_dilation, generate_binary_structure, median_filter File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. __________________ ERROR collecting segment/tests/test_mrf.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_mrf.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_mrf.py:4: in from dipy.data import get_fnames ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_mrf.py", line 4, in from dipy.data import get_fnames File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. __________________ ERROR collecting segment/tests/test_qbx.py __________________ ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_qbx.py:6: in from dipy.segment.clustering import QuickBundles, QuickBundlesX, qbx_and_merge ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/clustering.py:15: in from dipy.tracking.streamline import nbytes, set_number_of_points ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/streamline.py:8: in from scipy.spatial.distance import cdist /usr/lib64/python3.13/site-packages/scipy/spatial/__init__.py:110: in from ._kdtree import * /usr/lib64/python3.13/site-packages/scipy/spatial/_kdtree.py:4: in from ._ckdtree import cKDTree, cKDTreeNode _ckdtree.pyx:1: in init scipy.spatial._ckdtree ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject _____________ ERROR collecting segment/tests/test_quickbundles.py ______________ ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_quickbundles.py:6: in from dipy.segment.clustering import QuickBundles ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/clustering.py:15: in from dipy.tracking.streamline import nbytes, set_number_of_points ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/streamline.py:8: in from scipy.spatial.distance import cdist /usr/lib64/python3.13/site-packages/scipy/spatial/__init__.py:110: in from ._kdtree import * /usr/lib64/python3.13/site-packages/scipy/spatial/_kdtree.py:4: in from ._ckdtree import cKDTree, cKDTreeNode _ckdtree.pyx:1: in init scipy.spatial._ckdtree ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject ________________ ERROR collecting segment/tests/test_tissue.py _________________ ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_tissue.py:5: in from dipy.segment.tissue import compute_directional_average, dam_classifier ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tissue.py:4: in from dipy.sims.voxel import add_noise ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/sims/voxel.py:3: in from scipy.special import jn /usr/lib64/python3.13/site-packages/scipy/special/__init__.py:807: in from . import _ufuncs scipy/special/_ufuncs.pyx:1: in init scipy.special._ufuncs ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject _________________ ERROR collecting segment/tests/test_utils.py _________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_utils.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_utils.py:3: in from dipy.segment.utils import remove_holes_and_islands ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/utils.py:4: in from scipy.ndimage import label /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/tests/test_utils.py", line 3, in from dipy.segment.utils import remove_holes_and_islands File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/segment/utils.py", line 4, in from scipy.ndimage import label File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting sims/tests/test_phantom.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/sims/tests/test_phantom.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/sims/tests/test_phantom.py:4: in from dipy.core.gradients import gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/sims/tests/test_phantom.py", line 4, in from dipy.core.gradients import gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. __________________ ERROR collecting sims/tests/test_voxel.py ___________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/sims/tests/test_voxel.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/sims/tests/test_voxel.py:9: in from dipy.core.gradients import gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/sims/tests/test_voxel.py", line 9, in from dipy.core.gradients import gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ________________ ERROR collecting stats/tests/test_analysis.py _________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/stats/tests/test_analysis.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/stats/tests/test_analysis.py:4: in from dipy.stats.analysis import afq_profile, gaussian_weights ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/stats/analysis.py:4: in from scipy.ndimage import map_coordinates /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/stats/tests/test_analysis.py", line 4, in from dipy.stats.analysis import afq_profile, gaussian_weights File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/stats/analysis.py", line 4, in from scipy.ndimage import map_coordinates File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ___________________ ERROR collecting stats/tests/test_qc.py ____________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/stats/tests/test_qc.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/stats/tests/test_qc.py:4: in from dipy.core.gradients import gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/stats/tests/test_qc.py", line 4, in from dipy.core.gradients import gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ______________ ERROR collecting tracking/tests/test_distances.py _______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_distances.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_distances.py:11: in from dipy.data import get_fnames ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_distances.py", line 11, in from dipy.data import get_fnames File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting tracking/tests/test_fbc.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_fbc.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_fbc.py:4: in from dipy.core.sphere import Sphere ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/sphere.py:4: in from scipy import optimize /usr/lib64/python3.13/site-packages/scipy/__init__.py:134: in __getattr__ return _importlib.import_module(f'scipy.{name}') /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) /usr/lib64/python3.13/site-packages/scipy/optimize/__init__.py:414: in from ._optimize import * /usr/lib64/python3.13/site-packages/scipy/optimize/_optimize.py:35: in from scipy.linalg import cholesky, issymmetric, LinAlgError /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_fbc.py", line 4, in from dipy.core.sphere import Sphere File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/sphere.py", line 4, in from scipy import optimize File "/usr/lib64/python3.13/site-packages/scipy/__init__.py", line 134, in __getattr__ return _importlib.import_module(f'scipy.{name}') File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib64/python3.13/site-packages/scipy/optimize/__init__.py", line 414, in from ._optimize import * File "/usr/lib64/python3.13/site-packages/scipy/optimize/_optimize.py", line 35, in from scipy.linalg import cholesky, issymmetric, LinAlgError File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting tracking/tests/test_life.py _________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_life.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_life.py:6: in import scipy.linalg as la /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_life.py", line 6, in import scipy.linalg as la File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _______________ ERROR collecting tracking/tests/test_metrics.py ________________ ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_metrics.py:7: in from dipy.tracking import distances as pf, metrics as tm ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/metrics.py:4: in from scipy.interpolate import splev, splprep /usr/lib64/python3.13/site-packages/scipy/interpolate/__init__.py:167: in from ._interpolate import * /usr/lib64/python3.13/site-packages/scipy/interpolate/_interpolate.py:8: in import scipy.special as spec /usr/lib64/python3.13/site-packages/scipy/special/__init__.py:807: in from . import _ufuncs scipy/special/_ufuncs.pyx:1: in init scipy.special._ufuncs ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject _____________ ERROR collecting tracking/tests/test_propagation.py ______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_propagation.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_propagation.py:4: in from dipy.data import default_sphere ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_propagation.py", line 4, in from dipy.data import default_sphere File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. __________ ERROR collecting tracking/tests/test_stopping_criterion.py __________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_stopping_criterion.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_stopping_criterion.py:3: in import scipy.ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_stopping_criterion.py", line 3, in import scipy.ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ______________ ERROR collecting tracking/tests/test_streamline.py ______________ ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_streamline.py:19: in from dipy.tracking.streamline import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/streamline.py:8: in from scipy.spatial.distance import cdist /usr/lib64/python3.13/site-packages/scipy/spatial/__init__.py:110: in from ._kdtree import * /usr/lib64/python3.13/site-packages/scipy/spatial/_kdtree.py:4: in from ._ckdtree import cKDTree, cKDTreeNode _ckdtree.pyx:1: in init scipy.spatial._ckdtree ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject _______________ ERROR collecting tracking/tests/test_tracking.py _______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_tracking.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_tracking.py:7: in from dipy.core.gradients import gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_tracking.py", line 7, in from dipy.core.gradients import gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ________________ ERROR collecting tracking/tests/test_utils.py _________________ ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/tests/test_utils.py:9: in from dipy.tracking import metrics ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/tracking/metrics.py:4: in from scipy.interpolate import splev, splprep /usr/lib64/python3.13/site-packages/scipy/interpolate/__init__.py:167: in from ._interpolate import * /usr/lib64/python3.13/site-packages/scipy/interpolate/_interpolate.py:8: in import scipy.special as spec /usr/lib64/python3.13/site-packages/scipy/special/__init__.py:807: in from . import _ufuncs scipy/special/_ufuncs.pyx:1: in init scipy.special._ufuncs ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject _______________ ERROR collecting utils/tests/test_tractogram.py ________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/utils/tests/test_tractogram.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/utils/tests/test_tractogram.py:6: in from dipy.data import get_fnames ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/utils/tests/test_tractogram.py", line 6, in from dipy.data import get_fnames File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting utils/tests/test_volume.py __________________ ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/utils/tests/test_volume.py:6: in from dipy.utils.volume import adjacency_calc ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/utils/volume.py:4: in from scipy.spatial.distance import pdist, squareform /usr/lib64/python3.13/site-packages/scipy/spatial/__init__.py:110: in from ._kdtree import * /usr/lib64/python3.13/site-packages/scipy/spatial/_kdtree.py:4: in from ._ckdtree import cKDTree, cKDTreeNode _ckdtree.pyx:1: in init scipy.spatial._ckdtree ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject _____________ ERROR collecting viz/horizon/tab/tests/test_base.py ______________ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/viz/__init__.py:5: in from dipy.viz.horizon.app import horizon ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/viz/horizon/app.py:7: in from dipy.io.stateful_tractogram import Space, StatefulTractogram ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/__init__.py:4: in from .dpy import Dpy ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/dpy.py:11: in import h5py /usr/lib64/python3.13/site-packages/h5py/__init__.py:45: in from ._conv import register_converters as _register_converters, \ h5py/_conv.pyx:1: in init h5py._conv ??? h5py/h5r.pyx:1: in init h5py.h5r ??? h5py/h5p.pyx:1: in init h5py.h5p ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject ___________________ ERROR collecting viz/tests/test_apps.py ____________________ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/viz/__init__.py:5: in from dipy.viz.horizon.app import horizon ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/viz/horizon/app.py:7: in from dipy.io.stateful_tractogram import Space, StatefulTractogram ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/__init__.py:4: in from .dpy import Dpy ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/dpy.py:11: in import h5py /usr/lib64/python3.13/site-packages/h5py/__init__.py:45: in from ._conv import register_converters as _register_converters, \ h5py/_conv.pyx:1: in init h5py._conv ??? h5py/h5r.pyx:1: in init h5py.h5r ??? h5py/h5p.pyx:1: in init h5py.h5p ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject ___________________ ERROR collecting viz/tests/test_fury.py ____________________ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/viz/__init__.py:5: in from dipy.viz.horizon.app import horizon ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/viz/horizon/app.py:7: in from dipy.io.stateful_tractogram import Space, StatefulTractogram ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/__init__.py:4: in from .dpy import Dpy ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/dpy.py:11: in import h5py /usr/lib64/python3.13/site-packages/h5py/__init__.py:45: in from ._conv import register_converters as _register_converters, \ h5py/_conv.pyx:1: in init h5py._conv ??? h5py/h5r.pyx:1: in init h5py.h5r ??? h5py/h5p.pyx:1: in init h5py.h5p ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject _________________ ERROR collecting viz/tests/test_regtools.py __________________ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/viz/__init__.py:5: in from dipy.viz.horizon.app import horizon ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/viz/horizon/app.py:7: in from dipy.io.stateful_tractogram import Space, StatefulTractogram ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/__init__.py:4: in from .dpy import Dpy ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/dpy.py:11: in import h5py /usr/lib64/python3.13/site-packages/h5py/__init__.py:45: in from ._conv import register_converters as _register_converters, \ h5py/_conv.pyx:1: in init h5py._conv ??? h5py/h5r.pyx:1: in init h5py.h5r ??? h5py/h5p.pyx:1: in init h5py.h5p ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject ________________ ERROR collecting viz/tests/test_streamline.py _________________ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/viz/__init__.py:5: in from dipy.viz.horizon.app import horizon ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/viz/horizon/app.py:7: in from dipy.io.stateful_tractogram import Space, StatefulTractogram ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/__init__.py:4: in from .dpy import Dpy ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/dpy.py:11: in import h5py /usr/lib64/python3.13/site-packages/h5py/__init__.py:45: in from ._conv import register_converters as _register_converters, \ h5py/_conv.pyx:1: in init h5py._conv ??? h5py/h5r.pyx:1: in init h5py.h5r ??? h5py/h5p.pyx:1: in init h5py.h5p ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject ___________________ ERROR collecting viz/tests/test_util.py ____________________ /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1310: in _find_and_load_unlocked ??? :488: in _call_with_frames_removed ??? :1387: in _gcd_import ??? :1360: in _find_and_load ??? :1331: in _find_and_load_unlocked ??? :935: in _load_unlocked ??? :1026: in exec_module ??? :488: in _call_with_frames_removed ??? ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/viz/__init__.py:5: in from dipy.viz.horizon.app import horizon ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/viz/horizon/app.py:7: in from dipy.io.stateful_tractogram import Space, StatefulTractogram ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/__init__.py:4: in from .dpy import Dpy ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/dpy.py:11: in import h5py /usr/lib64/python3.13/site-packages/h5py/__init__.py:45: in from ._conv import register_converters as _register_converters, \ h5py/_conv.pyx:1: in init h5py._conv ??? h5py/h5r.pyx:1: in init h5py.h5r ??? h5py/h5p.pyx:1: in init h5py.h5p ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject ________________ ERROR collecting workflows/tests/test_align.py ________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_align.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_align.py:10: in from dipy.align.tests.test_imwarp import get_synthetic_warped_circle ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_align.py", line 10, in from dipy.align.tests.test_imwarp import get_synthetic_warped_circle File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _______________ ERROR collecting workflows/tests/test_denoise.py _______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_denoise.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_denoise.py:8: in from dipy.data import get_fnames ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_denoise.py", line 8, in from dipy.data import get_fnames File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting workflows/tests/test_io.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_io.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_io.py:12: in import dipy.core.gradients as grad ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_io.py", line 12, in import dipy.core.gradients as grad File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _______________ ERROR collecting workflows/tests/test_masking.py _______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_masking.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_masking.py:5: in from dipy.data import get_fnames ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_masking.py", line 5, in from dipy.data import get_fnames File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting workflows/tests/test_nn.py __________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_nn.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_nn.py:8: in from dipy.data import get_fnames ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_nn.py", line 8, in from dipy.data import get_fnames File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ___________ ERROR collecting workflows/tests/test_reconst_csa_csd.py ___________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_csa_csd.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_csa_csd.py:9: in from dipy.core.gradients import generate_bvecs ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_csa_csd.py", line 9, in from dipy.core.gradients import generate_bvecs File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _____________ ERROR collecting workflows/tests/test_reconst_dki.py _____________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_dki.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_dki.py:8: in from dipy.core.gradients import generate_bvecs ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_dki.py", line 8, in from dipy.core.gradients import generate_bvecs File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _____________ ERROR collecting workflows/tests/test_reconst_dsi.py _____________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_dsi.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_dsi.py:8: in from dipy.data import get_fnames ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_dsi.py", line 8, in from dipy.data import get_fnames File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _____________ ERROR collecting workflows/tests/test_reconst_dti.py _____________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_dti.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_dti.py:8: in from dipy.data import get_fnames ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_dti.py", line 8, in from dipy.data import get_fnames File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ____________ ERROR collecting workflows/tests/test_reconst_ivim.py _____________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_ivim.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_ivim.py:8: in from dipy.core.gradients import generate_bvecs, gradient_table ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_ivim.py", line 8, in from dipy.core.gradients import generate_bvecs, gradient_table File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ___________ ERROR collecting workflows/tests/test_reconst_mapmri.py ____________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_mapmri.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_mapmri.py:9: in from dipy.core.gradients import generate_bvecs ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py:5: in from scipy.linalg import inv, polar /usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py:203: in from ._misc import * /usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py:3: in from .blas import get_blas_funcs /usr/lib64/python3.13/site-packages/scipy/linalg/blas.py:213: in from scipy.linalg import _fblas E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_mapmri.py", line 9, in from dipy.core.gradients import generate_bvecs File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/core/gradients.py", line 5, in from scipy.linalg import inv, polar File "/usr/lib64/python3.13/site-packages/scipy/linalg/__init__.py", line 203, in from ._misc import * File "/usr/lib64/python3.13/site-packages/scipy/linalg/_misc.py", line 3, in from .blas import get_blas_funcs File "/usr/lib64/python3.13/site-packages/scipy/linalg/blas.py", line 213, in from scipy.linalg import _fblas Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ____________ ERROR collecting workflows/tests/test_reconst_rumba.py ____________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_rumba.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_rumba.py:8: in from dipy.data import get_fnames ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_reconst_rumba.py", line 8, in from dipy.data import get_fnames File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _______________ ERROR collecting workflows/tests/test_segment.py _______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_segment.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_segment.py:8: in from dipy.align.streamlinear import BundleMinDistanceMetric ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py:27: in from dipy.align._public import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py:18: in from dipy.align.imaffine import ( ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py:44: in import scipy.ndimage as ndimage /usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py:152: in from ._filters import * /usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py:39: in from . import _nd_image E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_segment.py", line 8, in from dipy.align.streamlinear import BundleMinDistanceMetric File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/__init__.py", line 27, in from dipy.align._public import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/_public.py", line 18, in from dipy.align.imaffine import ( File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/align/imaffine.py", line 44, in import scipy.ndimage as ndimage File "/usr/lib64/python3.13/site-packages/scipy/ndimage/__init__.py", line 152, in from ._filters import * File "/usr/lib64/python3.13/site-packages/scipy/ndimage/_filters.py", line 39, in from . import _nd_image Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ________________ ERROR collecting workflows/tests/test_stats.py ________________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_stats.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_stats.py:10: in from dipy.data import get_fnames ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_stats.py", line 10, in from dipy.data import get_fnames File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. ______________ ERROR collecting workflows/tests/test_tracking.py _______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_tracking.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_tracking.py:9: in from dipy.data import get_fnames ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_tracking.py", line 9, in from dipy.data import get_fnames File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. _________________ ERROR collecting workflows/tests/test_viz.py _________________ ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_viz.py:9: in from dipy.io.image import save_nifti ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/__init__.py:4: in from .dpy import Dpy ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/io/dpy.py:11: in import h5py /usr/lib64/python3.13/site-packages/h5py/__init__.py:45: in from ._conv import register_converters as _register_converters, \ h5py/_conv.pyx:1: in init h5py._conv ??? h5py/h5r.pyx:1: in init h5py.h5r ??? h5py/h5p.pyx:1: in init h5py.h5p ??? E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject ______________ ERROR collecting workflows/tests/test_workflow.py _______________ ImportError while importing test module '/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_workflow.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib64/python3.13/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_workflow.py:8: in from dipy.data import get_fnames ../../BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py:9: in from scipy.sparse import load_npz /usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py:294: in from ._csr import * /usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py:11: in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, E ImportError: numpy.core.multiarray failed to import ------------------------------- Captured stderr -------------------------------- A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/bin/pytest", line 8, in sys.exit(console_main()) File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201, in console_main code = main() File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 336, in _main config.hook.pytest_collection(session=session) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 347, in pytest_collection session.perform_collect() File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 809, in perform_collect self.items.extend(self.genitems(node)) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 975, in genitems yield from self.genitems(subnode) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 970, in genitems rep, duplicate = self._collect_one_node(node, handle_dupes) File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 835, in _collect_one_node rep = collect_one_node(node) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 567, in collect_one_node rep: CollectReport = ihook.pytest_make_collect_report(collector=collector) File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 391, in pytest_make_collect_report call = CallInfo.from_call( File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341, in from_call result: TResult | None = func() File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 549, in collect self._register_setup_module_fixture() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 562, in _register_setup_module_fixture self.obj, ("setUpModule", "setup_module") File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 284, in obj self._obj = obj = self._getobj() File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 546, in _getobj return importtestmodule(self.path, self.config) File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 493, in importtestmodule mod = import_path( File "/usr/lib/python3.13/site-packages/_pytest/pathlib.py", line 587, in import_path importlib.import_module(module_name) File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/usr/lib/python3.13/site-packages/_pytest/assertion/rewrite.py", line 184, in exec_module exec(co, module.__dict__) File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/workflows/tests/test_workflow.py", line 8, in from dipy.data import get_fnames File "/builddir/build/BUILD/python-dipy-1.10.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dipy/data/__init__.py", line 9, in from scipy.sparse import load_npz File "/usr/lib64/python3.13/site-packages/scipy/sparse/__init__.py", line 294, in from ._csr import * File "/usr/lib64/python3.13/site-packages/scipy/sparse/_csr.py", line 11, in from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks, Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.0 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. =========================== short test summary info ============================ ERROR align/tests/test_api.py ERROR align/tests/test_crosscorr.py ERROR align/tests/test_expectmax.py ERROR align/tests/test_imaffine.py ERROR align/tests/test_imwarp.py ERROR align/tests/test_metrics.py ERROR align/tests/test_parzenhist.py ERROR align/tests/test_reslice.py ERROR align/tests/test_scalespace.py ERROR align/tests/test_streamlinear.py ERROR align/tests/test_streamwarp.py ERROR align/tests/test_sumsqdiff.py ERROR align/tests/test_transforms.py ERROR align/tests/test_vector_fields.py ERROR align/tests/test_whole_brain_slr.py ERROR core/tests/test_gradients.py ERROR core/tests/test_interpolation.py ERROR core/tests/test_optimize.py ERROR core/tests/test_rng.py ERROR core/tests/test_sphere.py ERROR core/tests/test_subdivide_octahedron.py ERROR data/tests/test_data.py ERROR data/tests/test_fetcher.py ERROR denoise/tests/test_ascm.py ERROR denoise/tests/test_denoise.py ERROR denoise/tests/test_gibbs.py - ValueError: numpy.dtype size changed, may... ERROR denoise/tests/test_kernel.py ERROR denoise/tests/test_lpca.py - ValueError: numpy.dtype size changed, may ... ERROR denoise/tests/test_noise_estimate.py ERROR denoise/tests/test_patch2self.py ERROR direction/tests/test_bootstrap_direction_getter.py - ValueError: numpy.... ERROR direction/tests/test_peaks.py - ValueError: numpy.dtype size changed, m... ERROR direction/tests/test_pmf.py - ValueError: numpy.dtype size changed, may... ERROR direction/tests/test_prob_direction_getter.py - ValueError: numpy.dtype... ERROR direction/tests/test_ptt_direction_getter.py - ValueError: numpy.dtype ... ERROR io/tests/test_dpy.py - ValueError: numpy.dtype size changed, may indica... ERROR io/tests/test_io.py - ValueError: numpy.dtype size changed, may indicat... ERROR io/tests/test_io_gradients.py - ValueError: numpy.dtype size changed, m... ERROR io/tests/test_io_peaks.py - ValueError: numpy.dtype size changed, may i... ERROR io/tests/test_stateful_tractogram.py - ValueError: numpy.dtype size cha... ERROR io/tests/test_streamline.py - ValueError: numpy.dtype size changed, may... ERROR io/tests/test_utils.py - ValueError: numpy.dtype size changed, may indi... ERROR nn/tests/test_cnn_1denoiser.py ERROR nn/tests/test_deepn4.py ERROR nn/tests/test_evac.py ERROR nn/tests/test_histo_resdnn.py ERROR nn/tests/test_synb0.py ERROR nn/tests/test_tf.py ERROR nn/tests/test_utils.py ERROR reconst/tests/test_bingham.py ERROR reconst/tests/test_cache.py ERROR reconst/tests/test_cross_validation.py ERROR reconst/tests/test_csdeconv.py ERROR reconst/tests/test_cti.py ERROR reconst/tests/test_dki.py ERROR reconst/tests/test_dki_micro.py ERROR reconst/tests/test_dsi.py ERROR reconst/tests/test_dsi_deconv.py ERROR reconst/tests/test_dsi_metrics.py ERROR reconst/tests/test_dti.py ERROR reconst/tests/test_eudx_dg.py - ValueError: numpy.dtype size changed, m... ERROR reconst/tests/test_forecast.py ERROR reconst/tests/test_fwdti.py ERROR reconst/tests/test_gqi.py ERROR reconst/tests/test_ivim.py ERROR reconst/tests/test_mapmri.py - ValueError: numpy.dtype size changed, ma... ERROR reconst/tests/test_mcsd.py ERROR reconst/tests/test_msdki.py ERROR reconst/tests/test_multi_voxel.py ERROR reconst/tests/test_odf.py ERROR reconst/tests/test_peak_finding.py ERROR reconst/tests/test_qtdmri.py - ValueError: numpy.dtype size changed, ma... ERROR reconst/tests/test_qti.py ERROR reconst/tests/test_rumba.py ERROR reconst/tests/test_sfm.py ERROR reconst/tests/test_shm.py - ValueError: numpy.dtype size changed, may i... ERROR reconst/tests/test_shore.py - ValueError: numpy.dtype size changed, may... ERROR reconst/tests/test_shore_metrics.py - ValueError: numpy.dtype size chan... ERROR reconst/tests/test_shore_odf.py ERROR reconst/tests/test_weights_method.py ERROR segment/tests/test_bundles.py ERROR segment/tests/test_clustering.py - ValueError: numpy.dtype size changed... ERROR segment/tests/test_fss.py ERROR segment/tests/test_mask.py ERROR segment/tests/test_mrf.py ERROR segment/tests/test_qbx.py - ValueError: numpy.dtype size changed, may i... ERROR segment/tests/test_quickbundles.py - ValueError: numpy.dtype size chang... ERROR segment/tests/test_tissue.py - ValueError: numpy.dtype size changed, ma... ERROR segment/tests/test_utils.py ERROR sims/tests/test_phantom.py ERROR sims/tests/test_voxel.py ERROR stats/tests/test_analysis.py ERROR stats/tests/test_qc.py ERROR tracking/tests/test_distances.py ERROR tracking/tests/test_fbc.py ERROR tracking/tests/test_life.py ERROR tracking/tests/test_metrics.py - ValueError: numpy.dtype size changed, ... ERROR tracking/tests/test_propagation.py ERROR tracking/tests/test_stopping_criterion.py ERROR tracking/tests/test_streamline.py - ValueError: numpy.dtype size change... ERROR tracking/tests/test_tracking.py ERROR tracking/tests/test_utils.py - ValueError: numpy.dtype size changed, ma... ERROR utils/tests/test_tractogram.py ERROR utils/tests/test_volume.py - ValueError: numpy.dtype size changed, may ... ERROR viz/horizon/tab/tests/test_base.py - ValueError: numpy.dtype size chang... ERROR viz/tests/test_apps.py - ValueError: numpy.dtype size changed, may indi... ERROR viz/tests/test_fury.py - ValueError: numpy.dtype size changed, may indi... ERROR viz/tests/test_regtools.py - ValueError: numpy.dtype size changed, may ... ERROR viz/tests/test_streamline.py - ValueError: numpy.dtype size changed, ma... ERROR viz/tests/test_util.py - ValueError: numpy.dtype size changed, may indi... ERROR workflows/tests/test_align.py ERROR workflows/tests/test_denoise.py ERROR workflows/tests/test_io.py ERROR workflows/tests/test_masking.py ERROR workflows/tests/test_nn.py ERROR workflows/tests/test_reconst_csa_csd.py ERROR workflows/tests/test_reconst_dki.py ERROR workflows/tests/test_reconst_dsi.py ERROR workflows/tests/test_reconst_dti.py ERROR workflows/tests/test_reconst_ivim.py ERROR workflows/tests/test_reconst_mapmri.py ERROR workflows/tests/test_reconst_rumba.py ERROR workflows/tests/test_segment.py ERROR workflows/tests/test_stats.py ERROR workflows/tests/test_tracking.py ERROR workflows/tests/test_viz.py - ValueError: numpy.dtype size changed, may... ERROR workflows/tests/test_workflow.py !!!!!!!!!!!!!!!!!! Interrupted: 127 errors during collection !!!!!!!!!!!!!!!!!!! ============================= 127 errors in 5.36s ============================== RPM build errors: error: Bad exit status from /var/tmp/rpm-tmp.C23618 (%check) Bad exit status from /var/tmp/rpm-tmp.C23618 (%check) Finish: rpmbuild python-dipy-1.10.0-4.fc42.src.rpm Finish: build phase for python-dipy-1.10.0-4.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1734111368.427546/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names ERROR: Exception(/var/lib/copr-rpmbuild/results/python-dipy-1.10.0-4.fc42.src.rpm) Config(fedora-41-x86_64) 7 minutes 52 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_failure=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot ERROR: Command failed: # /usr/bin/systemd-nspawn -q -M 521291c539d546148241bfe5478b668e -D /var/lib/mock/fedora-41-x86_64-1734111368.427546/root -a -u mockbuild --capability=cap_ipc_lock --rlimit=RLIMIT_NOFILE=10240 --capability=cap_ipc_lock --bind=/tmp/mock-resolv.zry3jcn2:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;\007"' '--setenv=PS1= \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -ba --noprep --target x86_64 /builddir/build/originals/python-dipy.spec' Copr build error: Build failed