Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c14d' (ED25519) to the list of known hosts. cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-aomnjrs_/libsonata rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading libsonata-0.1.23.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o libsonata-0.1.23.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/qulogic/matplotlib-310/libsonata/libsonata-0.1.23.tar.gz/md5/4a2f0917fd2882f707e2b2e92e40f85b/libsonata-0.1.23.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 624k 100 624k 0 0 7690k 0 --:--:-- --:--:-- --:--:-- 7712k INFO: Reading stdout from command: md5sum libsonata-0.1.23.tar.gz Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-aomnjrs_/libsonata/libsonata.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-aomnjrs_/libsonata --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1731400446.231082 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.9 starting (python version = 3.12.1, NVR = mock-5.9-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-aomnjrs_/libsonata/libsonata.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-aomnjrs_/libsonata --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1731400446.231082 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-aomnjrs_/libsonata/libsonata.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.9 INFO: Mock Version: 5.9 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1731400446.231082/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1731400446.231082/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/a6118e40d21946c1daf3c4aff29f373cec1f70b55ec3aeb688b0b8a370efc93f/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/a6118e40d21946c1daf3c4aff29f373cec1f70b55ec3aeb688b0b8a370efc93f/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1731400446.231082/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.6.2-1.fc42.x86_64 dnf5-plugins-5.2.6.2-1.fc42.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 863.6 KiB/s | 27.6 KiB | 00m00s Copr repository 100% | 33.1 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 219.8 KiB/s | 16.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.37-1.fc42 fedora 8.2 MiB bzip2 x86_64 1.0.8-19.fc41 fedora 95.7 KiB coreutils x86_64 9.5-10.fc42 fedora 5.7 MiB cpio x86_64 2.15-2.fc41 fedora 1.1 MiB diffutils x86_64 3.10-8.fc41 fedora 1.6 MiB fedora-release-common noarch 42-0.8 fedora 19.7 KiB findutils x86_64 1:4.10.0-4.fc41 fedora 1.8 MiB gawk x86_64 5.3.0-4.fc41 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.40.9000-16.fc42 fedora 0.0 B grep x86_64 3.11-9.fc41 fedora 1.0 MiB gzip x86_64 1.13-2.fc41 fedora 389.0 KiB info x86_64 7.1.1-2.fc42 fedora 361.8 KiB patch x86_64 2.7.6-25.fc41 fedora 266.7 KiB redhat-rpm-config noarch 296-1.fc42 fedora 186.6 KiB rpm-build x86_64 4.20.0-1.fc42 fedora 194.3 KiB sed x86_64 4.9-3.fc41 fedora 861.5 KiB shadow-utils x86_64 2:4.16.0-6.fc42 fedora 4.1 MiB tar x86_64 2:1.35-4.fc41 fedora 2.9 MiB unzip x86_64 6.0-64.fc41 fedora 386.8 KiB util-linux x86_64 2.40.2-8.fc42 fedora 3.7 MiB which x86_64 2.21-42.fc41 fedora 80.2 KiB xz x86_64 1:5.6.3-2.fc42 fedora 1.2 MiB Installing dependencies: add-determinism x86_64 0.4.3-1.fc42 fedora 2.4 MiB alternatives x86_64 1.30-1.fc41 fedora 66.3 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs x86_64 4.0.2-1.fc41 fedora 331.3 KiB authselect x86_64 1.5.0-8.fc42 fedora 157.5 KiB authselect-libs x86_64 1.5.0-8.fc42 fedora 822.2 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils x86_64 2.43.50-5.fc42 fedora 27.6 MiB build-reproducibility-srpm-macros noarch 0.4.3-1.fc42 fedora 735.0 B bzip2-libs x86_64 1.0.8-19.fc41 fedora 80.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-2.fc42 fedora 2.6 MiB coreutils-common x86_64 9.5-10.fc42 fedora 11.2 MiB cracklib x86_64 2.9.11-6.fc41 fedora 238.9 KiB crypto-policies noarch 20241106-1.git35892de.fc42 fedora 136.9 KiB curl x86_64 8.10.1-2.fc42 fedora 453.3 KiB cyrus-sasl-lib x86_64 2.1.28-27.fc41 fedora 2.3 MiB debugedit x86_64 5.1-1.fc42 fedora 192.7 KiB dwz x86_64 0.15-8.fc42 fedora 299.2 KiB ed x86_64 1.20.2-2.fc41 fedora 146.9 KiB efi-srpm-macros noarch 5-12.fc41 fedora 40.1 KiB elfutils x86_64 0.192-3.fc42 fedora 2.7 MiB elfutils-debuginfod-client x86_64 0.192-3.fc42 fedora 76.0 KiB elfutils-default-yama-scope noarch 0.192-3.fc42 fedora 1.8 KiB elfutils-libelf x86_64 0.192-3.fc42 fedora 1.2 MiB elfutils-libs x86_64 0.192-3.fc42 fedora 675.1 KiB fedora-gpg-keys noarch 42-0.3 fedora 126.4 KiB fedora-release noarch 42-0.8 fedora 0.0 B fedora-release-identity-basic noarch 42-0.8 fedora 719.0 B fedora-repos noarch 42-0.3 fedora 4.9 KiB fedora-repos-rawhide noarch 42-0.3 fedora 2.2 KiB file x86_64 5.45-7.fc41 fedora 103.5 KiB file-libs x86_64 5.45-7.fc41 fedora 9.9 MiB filesystem x86_64 3.18-29.fc42 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-1.fc42 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal x86_64 15.2-2.fc42 fedora 13.0 MiB gdbm x86_64 1:1.23-7.fc41 fedora 460.9 KiB gdbm-libs x86_64 1:1.23-7.fc41 fedora 121.9 KiB ghc-srpm-macros noarch 1.9.2-1.fc42 fedora 779.0 B glibc x86_64 2.40.9000-16.fc42 fedora 6.6 MiB glibc-common x86_64 2.40.9000-16.fc42 fedora 1.0 MiB glibc-gconv-extra x86_64 2.40.9000-16.fc42 fedora 7.1 MiB gmp x86_64 1:6.3.0-2.fc41 fedora 811.4 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-3.fc41 fedora 60.8 KiB jansson x86_64 2.14-1.fc42 fedora 93.1 KiB json-c x86_64 0.18-1.fc42 fedora 83.3 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-4.fc41 fedora 54.4 KiB krb5-libs x86_64 1.21.3-3.fc42 fedora 2.3 MiB libacl x86_64 2.3.2-2.fc41 fedora 40.0 KiB libarchive x86_64 3.7.7-1.fc42 fedora 932.3 KiB libattr x86_64 2.5.2-4.fc41 fedora 28.5 KiB libblkid x86_64 2.40.2-8.fc42 fedora 262.5 KiB libbrotli x86_64 1.1.0-5.fc41 fedora 837.6 KiB libcap x86_64 2.71-1.fc42 fedora 210.8 KiB libcap-ng x86_64 0.8.5-3.fc41 fedora 69.2 KiB libcom_err x86_64 1.47.1-6.fc42 fedora 67.2 KiB libcurl x86_64 8.10.1-2.fc42 fedora 838.4 KiB libeconf x86_64 0.7.4-3.fc42 fedora 65.7 KiB libevent x86_64 2.1.12-14.fc41 fedora 895.7 KiB libfdisk x86_64 2.40.2-8.fc42 fedora 362.9 KiB libffi x86_64 3.4.6-3.fc42 fedora 86.4 KiB libgcc x86_64 14.2.1-6.fc42 fedora 270.6 KiB libgomp x86_64 14.2.1-6.fc42 fedora 519.8 KiB libidn2 x86_64 2.3.7-2.fc41 fedora 329.1 KiB libmount x86_64 2.40.2-8.fc42 fedora 355.8 KiB libnghttp2 x86_64 1.64.0-1.fc42 fedora 174.5 KiB libnsl2 x86_64 2.0.1-2.fc41 fedora 57.9 KiB libpkgconf x86_64 2.3.0-1.fc42 fedora 78.2 KiB libpsl x86_64 0.21.5-4.fc41 fedora 80.5 KiB libpwquality x86_64 1.4.5-11.fc41 fedora 417.8 KiB libselinux x86_64 3.7-6.fc42 fedora 181.1 KiB libsemanage x86_64 3.7-3.fc42 fedora 298.0 KiB libsepol x86_64 3.7-3.fc42 fedora 818.0 KiB libsmartcols x86_64 2.40.2-8.fc42 fedora 180.4 KiB libssh x86_64 0.11.1-1.fc42 fedora 569.6 KiB libssh-config noarch 0.11.1-1.fc42 fedora 277.0 B libstdc++ x86_64 14.2.1-6.fc42 fedora 2.8 MiB libtasn1 x86_64 4.19.0-9.fc41 fedora 175.7 KiB libtirpc x86_64 1.3.6-0.fc42 fedora 203.0 KiB libtool-ltdl x86_64 2.4.7-12.fc41 fedora 66.2 KiB libunistring x86_64 1.1-8.fc41 fedora 1.7 MiB libuuid x86_64 2.40.2-8.fc42 fedora 41.4 KiB libverto x86_64 0.3.2-9.fc41 fedora 29.5 KiB libxcrypt x86_64 4.4.36-10.fc42 fedora 267.7 KiB libxml2 x86_64 2.12.8-2.fc41 fedora 1.7 MiB libzstd x86_64 1.5.6-2.fc41 fedora 795.9 KiB lua-libs x86_64 5.4.7-1.fc42 fedora 285.0 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs x86_64 1.10.0-1.fc41 fedora 145.5 KiB mpfr x86_64 4.2.1-5.fc41 fedora 832.1 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs x86_64 6.5-2.20240629.fc41 fedora 975.2 KiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap x86_64 2.6.8-5.fc41 fedora 644.2 KiB openssl-libs x86_64 1:3.2.2-8.fc42 fedora 7.8 MiB p11-kit x86_64 0.25.5-4.fc42 fedora 2.2 MiB p11-kit-trust x86_64 0.25.5-4.fc42 fedora 403.8 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam x86_64 1.7.0-2.fc42 fedora 1.7 MiB pam-libs x86_64 1.7.0-2.fc42 fedora 127.7 KiB pcre2 x86_64 10.44-1.fc41.1 fedora 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf x86_64 2.3.0-1.fc42 fedora 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc42 fedora 989.0 B popt x86_64 1.19-7.fc41 fedora 136.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB pyproject-srpm-macros noarch 1.16.1-1.fc42 fedora 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 fedora 500.0 B qt6-srpm-macros noarch 6.8.0-1.fc42 fedora 456.0 B readline x86_64 8.2-11.fc42 fedora 493.1 KiB rpm x86_64 4.20.0-1.fc42 fedora 3.1 MiB rpm-build-libs x86_64 4.20.0-1.fc42 fedora 206.7 KiB rpm-libs x86_64 4.20.0-1.fc42 fedora 726.1 KiB rpm-sequoia x86_64 1.7.0-2.fc41 fedora 2.4 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-5.fc41 fedora 720.7 KiB sqlite-libs x86_64 3.46.1-1.fc42 fedora 1.4 MiB systemd-libs x86_64 257~rc1-2.fc42 fedora 2.3 MiB util-linux-core x86_64 2.40.2-8.fc42 fedora 1.5 MiB xxhash-libs x86_64 0.8.2-4.fc42 fedora 88.4 KiB xz-libs x86_64 1:5.6.3-2.fc42 fedora 218.4 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip x86_64 3.0-41.fc41 fedora 703.2 KiB zlib-ng-compat x86_64 2.2.2-1.fc42 fedora 134.0 KiB zstd x86_64 1.5.6-2.fc41 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 154 packages Total size of inbound packages is 53 MiB. Need to download 0 B. After this operation, 180 MiB extra will be used (install 180 MiB, remove 0 B). [1/1] tar-2:1.35-4.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [1/1] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/2] bzip2-0:1.0.8-19.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [2/2] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/3] redhat-rpm-config-0:296-1.fc42.no 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [3/3] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/4] rpm-build-0:4.20.0-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [4/4] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/5] unzip-0:6.0-64.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded 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Importing PGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing PGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. 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100% | 0.0 B/s | 2.3 KiB | 00m00s [142/156] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [143/156] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [144/156] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [145/156] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [146/156] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [147/156] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [148/156] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [149/156] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [150/156] Installing redhat-rpm-config- 100% | 62.9 MiB/s | 193.2 KiB | 00m00s [151/156] Installing rpm-build-0:4.20.0 100% | 49.5 MiB/s | 202.9 KiB | 00m00s [152/156] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [153/156] Installing util-linux-0:2.40. 100% | 100.4 MiB/s | 3.7 MiB | 00m00s [154/156] Installing authselect-0:1.5.0 100% | 39.5 MiB/s | 161.9 KiB | 00m00s [155/156] Installing which-0:2.21-42.fc 100% | 80.5 MiB/s | 82.4 KiB | 00m00s [156/156] Installing info-0:7.1.1-2.fc4 100% | 132.0 KiB/s | 362.2 KiB | 00m03s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.4.3-1.fc42.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.x86_64 authselect-1.5.0-8.fc42.x86_64 authselect-libs-1.5.0-8.fc42.x86_64 basesystem-11-21.fc41.noarch bash-5.2.37-1.fc42.x86_64 binutils-2.43.50-5.fc42.x86_64 build-reproducibility-srpm-macros-0.4.3-1.fc42.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.69_v8.0.401-2.fc42.noarch coreutils-9.5-10.fc42.x86_64 coreutils-common-9.5-10.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20241106-1.git35892de.fc42.noarch curl-8.10.1-2.fc42.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.1-1.fc42.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-8.fc42.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.192-3.fc42.x86_64 elfutils-debuginfod-client-0.192-3.fc42.x86_64 elfutils-default-yama-scope-0.192-3.fc42.noarch elfutils-libelf-0.192-3.fc42.x86_64 elfutils-libs-0.192-3.fc42.x86_64 fedora-gpg-keys-42-0.3.noarch fedora-release-42-0.8.noarch fedora-release-common-42-0.8.noarch fedora-release-identity-basic-42-0.8.noarch fedora-repos-42-0.3.noarch fedora-repos-rawhide-42-0.3.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-29.fc42.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc42.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.2-2.fc42.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-16.fc42.x86_64 glibc-common-2.40.9000-16.fc42.x86_64 glibc-gconv-extra-2.40.9000-16.fc42.x86_64 glibc-minimal-langpack-2.40.9000-16.fc42.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-105ef944-65ca83d1 gpg-pubkey-31645531-66b6dccf gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1.1-2.fc42.x86_64 jansson-2.14-1.fc42.x86_64 json-c-0.18-1.fc42.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-3.fc42.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.7-1.fc42.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-8.fc42.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.71-1.fc42.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-6.fc42.x86_64 libcurl-8.10.1-2.fc42.x86_64 libeconf-0.7.4-3.fc42.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-8.fc42.x86_64 libffi-3.4.6-3.fc42.x86_64 libgcc-14.2.1-6.fc42.x86_64 libgomp-14.2.1-6.fc42.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-8.fc42.x86_64 libnghttp2-1.64.0-1.fc42.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc42.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-6.fc42.x86_64 libsemanage-3.7-3.fc42.x86_64 libsepol-3.7-3.fc42.x86_64 libsmartcols-2.40.2-8.fc42.x86_64 libssh-0.11.1-1.fc42.x86_64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-6.fc42.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.6-0.fc42.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-10.fc42.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.7-1.fc42.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.x86_64 openssl-libs-3.2.2-8.fc42.x86_64 p11-kit-0.25.5-4.fc42.x86_64 p11-kit-trust-0.25.5-4.fc42.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.7.0-2.fc42.x86_64 pam-libs-1.7.0-2.fc42.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.16.1-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.0-1.fc42.noarch readline-8.2-11.fc42.x86_64 redhat-rpm-config-296-1.fc42.noarch rpm-4.20.0-1.fc42.x86_64 rpm-build-4.20.0-1.fc42.x86_64 rpm-build-libs-4.20.0-1.fc42.x86_64 rpm-libs-4.20.0-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.16.0-6.fc42.x86_64 sqlite-libs-3.46.1-1.fc42.x86_64 systemd-libs-257~rc1-2.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-8.fc42.x86_64 util-linux-core-2.40.2-8.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-4.fc42.x86_64 xz-5.6.3-2.fc42.x86_64 xz-libs-5.6.3-2.fc42.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.2.2-1.fc42.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1729814400 Wrote: /builddir/build/SRPMS/libsonata-0.1.23-11.fc42.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1731400446.231082/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-aomnjrs_/libsonata/libsonata.spec) Config(child) 0 minutes 20 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/libsonata-0.1.23-11.fc42.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1731400446.231082/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1731400446.231082/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1731400446.231082/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.6.2-1.fc42.x86_64 dnf5-plugins-5.2.6.2-1.fc42.x86_64 Finish: chroot init Start: build phase for libsonata-0.1.23-11.fc42.src.rpm Start: build setup for libsonata-0.1.23-11.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1729814400 Wrote: /builddir/build/SRPMS/libsonata-0.1.23-11.fc42.src.rpm Updating and loading repositories: fedora 100% | 1.0 MiB/s | 27.6 KiB | 00m00s Copr repository 100% | 12.5 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: boost-devel x86_64 1.83.0-8.fc41 fedora 143.0 MiB catch2-devel x86_64 2.13.10-5.fc41 fedora 952.8 KiB cmake x86_64 3.30.5-1.fc42 fedora 32.7 MiB fmt-devel x86_64 11.0.2-2.fc42 fedora 575.3 KiB gcc-c++ x86_64 14.2.1-6.fc42 fedora 38.1 MiB git-core x86_64 2.47.0-1.fc42 fedora 22.6 MiB hdf5-devel x86_64 1.14.5-1.fc42 fedora 3.3 MiB highfive-devel x86_64 2.10.0-2.fc42 fedora 377.0 KiB json-devel x86_64 3.11.3-2.fc41 fedora 1.0 MiB pybind11-devel x86_64 2.13.6-1.fc42 copr_base 847.8 KiB python3-devel x86_64 3.13.0-1.fc42 fedora 1.8 MiB python3-h5py x86_64 3.12.1-3.fc42 fedora 4.4 MiB python3-pip noarch 24.2-2.fc42 fedora 11.4 MiB python3-pybind11 x86_64 2.13.6-1.fc42 copr_base 897.3 KiB python3-pytest noarch 8.3.3-3.fc42 fedora 20.8 MiB python3-setuptools noarch 74.1.3-3.fc42 fedora 8.4 MiB python3-setuptools_scm noarch 8.1.0-1.fc42 fedora 320.0 KiB python3-wheel noarch 1:0.44.0-1.fc42 fedora 521.0 KiB Installing dependencies: annobin-docs noarch 12.70-1.fc42 fedora 97.7 KiB annobin-plugin-gcc x86_64 12.70-1.fc42 fedora 985.6 KiB boost x86_64 1.83.0-8.fc41 fedora 1.3 KiB boost-atomic x86_64 1.83.0-8.fc41 fedora 21.0 KiB boost-chrono x86_64 1.83.0-8.fc41 fedora 37.6 KiB boost-container x86_64 1.83.0-8.fc41 fedora 65.5 KiB boost-context x86_64 1.83.0-8.fc41 fedora 16.5 KiB boost-contract x86_64 1.83.0-8.fc41 fedora 103.2 KiB boost-coroutine x86_64 1.83.0-8.fc41 fedora 21.2 KiB boost-date-time x86_64 1.83.0-8.fc41 fedora 16.3 KiB boost-fiber x86_64 1.83.0-8.fc41 fedora 82.8 KiB boost-filesystem x86_64 1.83.0-8.fc41 fedora 147.6 KiB boost-graph x86_64 1.83.0-8.fc41 fedora 346.4 KiB boost-iostreams x86_64 1.83.0-8.fc41 fedora 94.8 KiB boost-json x86_64 1.83.0-8.fc41 fedora 329.2 KiB boost-locale x86_64 1.83.0-8.fc41 fedora 606.2 KiB boost-log x86_64 1.83.0-8.fc41 fedora 1.5 MiB boost-math x86_64 1.83.0-8.fc41 fedora 647.1 KiB boost-nowide x86_64 1.83.0-8.fc41 fedora 24.9 KiB boost-numpy3 x86_64 1.83.0-8.fc41 fedora 57.6 KiB boost-program-options x86_64 1.83.0-8.fc41 fedora 272.7 KiB boost-python3 x86_64 1.83.0-8.fc41 fedora 250.5 KiB boost-random x86_64 1.83.0-8.fc41 fedora 29.7 KiB boost-regex x86_64 1.83.0-8.fc41 fedora 271.0 KiB boost-serialization x86_64 1.83.0-8.fc41 fedora 437.7 KiB boost-stacktrace x86_64 1.83.0-8.fc41 fedora 64.1 KiB boost-system x86_64 1.83.0-8.fc41 fedora 16.3 KiB boost-test x86_64 1.83.0-8.fc41 fedora 643.0 KiB boost-thread x86_64 1.83.0-8.fc41 fedora 136.8 KiB boost-timer x86_64 1.83.0-8.fc41 fedora 25.1 KiB boost-type_erasure x86_64 1.83.0-8.fc41 fedora 58.2 KiB boost-wave x86_64 1.83.0-8.fc41 fedora 635.9 KiB cmake-data noarch 3.30.5-1.fc42 fedora 8.2 MiB cmake-filesystem x86_64 3.30.5-1.fc42 fedora 0.0 B cmake-rpm-macros noarch 3.30.5-1.fc42 fedora 7.5 KiB cpp x86_64 14.2.1-6.fc42 fedora 35.0 MiB emacs-filesystem noarch 1:30.0-3.fc41 fedora 0.0 B expat x86_64 2.6.4-1.fc42 fedora 285.5 KiB flexiblas x86_64 3.4.4-3.fc41 fedora 48.5 KiB flexiblas-netlib x86_64 3.4.4-3.fc41 fedora 10.7 MiB flexiblas-openblas-openmp x86_64 3.4.4-3.fc41 fedora 43.3 KiB fmt x86_64 11.0.2-2.fc42 fedora 264.1 KiB gcc x86_64 14.2.1-6.fc42 fedora 104.3 MiB gcc-gfortran x86_64 14.2.1-6.fc42 fedora 37.2 MiB gcc-plugin-annobin x86_64 14.2.1-6.fc42 fedora 57.6 KiB glibc-devel x86_64 2.40.9000-16.fc42 fedora 2.3 MiB hdf5 x86_64 1.14.5-1.fc42 fedora 7.1 MiB jsoncpp x86_64 1.9.5-8.fc41 fedora 253.4 KiB kernel-headers x86_64 6.12.0-0.rc6.51.fc42 fedora 6.4 MiB less x86_64 668-1.fc42 fedora 406.4 KiB libaec x86_64 1.1.3-1.fc42 fedora 98.1 KiB libaec-devel x86_64 1.1.3-1.fc42 fedora 12.5 KiB libb2 x86_64 0.98.1-12.fc41 fedora 42.2 KiB libcbor x86_64 0.11.0-2.fc41 fedora 73.9 KiB libedit x86_64 3.1-53.20240808cvs.fc41 fedora 244.1 KiB libfido2 x86_64 1.15.0-2.fc41 fedora 238.2 KiB libgfortran x86_64 14.2.1-6.fc42 fedora 3.0 MiB libicu x86_64 74.2-2.fc41 fedora 34.9 MiB libicu-devel x86_64 74.2-2.fc41 fedora 5.6 MiB liblzf x86_64 3.6-29.fc41 fedora 53.8 KiB libmpc x86_64 1.3.1-6.fc41 fedora 164.7 KiB libquadmath x86_64 14.2.1-6.fc42 fedora 325.9 KiB libquadmath-devel x86_64 14.2.1-6.fc42 fedora 21.9 KiB libstdc++-devel x86_64 14.2.1-6.fc42 fedora 15.4 MiB libuv x86_64 1:1.49.2-1.fc42 fedora 569.4 KiB libxcrypt-devel x86_64 4.4.36-10.fc42 fedora 30.5 KiB make x86_64 1:4.4.1-9.fc42 fedora 1.8 MiB mpdecimal x86_64 2.5.1-16.fc41 fedora 204.9 KiB openblas x86_64 0.3.26-5.fc41 fedora 96.0 KiB openblas-openmp x86_64 0.3.26-5.fc41 fedora 39.4 MiB openssh x86_64 9.9p1-5.fc42 fedora 1.4 MiB openssh-clients x86_64 9.9p1-5.fc42 fedora 2.7 MiB pyproject-rpm-macros noarch 1.16.1-1.fc42 fedora 113.8 KiB python-pip-wheel noarch 24.2-2.fc42 fedora 1.2 MiB python-rpm-macros noarch 3.13-3.fc41 fedora 22.1 KiB python3 x86_64 3.13.0-1.fc42 fedora 31.8 KiB python3-cached_property noarch 2.0.1-1.fc42 fedora 34.8 KiB python3-iniconfig noarch 1.1.1-23.fc41 fedora 20.6 KiB python3-libs x86_64 3.13.0-1.fc42 fedora 40.4 MiB python3-numpy x86_64 1:1.26.4-8.fc41 fedora 43.8 MiB python3-packaging noarch 24.1-2.fc41 fedora 422.3 KiB python3-pluggy noarch 1.5.0-1.fc41 fedora 193.2 KiB python3-rpm-generators noarch 14-11.fc41 fedora 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 fedora 6.4 KiB python3-six noarch 1.16.0-23.fc41 fedora 118.3 KiB rhash x86_64 1.4.5-1.fc42 fedora 359.3 KiB tzdata noarch 2024a-9.fc41 fedora 1.7 MiB vim-filesystem noarch 2:9.1.825-1.fc42 fedora 40.0 B zlib-ng-compat-devel x86_64 2.2.2-1.fc42 fedora 106.8 KiB Transaction Summary: Installing: 107 packages Total size of inbound packages is 174 MiB. Need to download 95 MiB. After this operation, 707 MiB extra will be used (install 707 MiB, remove 0 B). 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23.2 MiB/s | 95.4 MiB | 00m04s Running transaction [ 1/109] Verify package files 100% | 185.0 B/s | 107.0 B | 00m01s [ 2/109] Prepare transaction 100% | 374.0 B/s | 107.0 B | 00m00s [ 3/109] Installing boost-system-0:1.8 100% | 16.9 MiB/s | 17.3 KiB | 00m00s [ 4/109] Installing cmake-filesystem-0 100% | 2.4 MiB/s | 7.3 KiB | 00m00s [ 5/109] Installing boost-chrono-0:1.8 100% | 37.7 MiB/s | 38.6 KiB | 00m00s [ 6/109] Installing boost-thread-0:1.8 100% | 67.2 MiB/s | 137.7 KiB | 00m00s [ 7/109] Installing libicu-0:74.2-2.fc 100% | 301.3 MiB/s | 35.0 MiB | 00m00s [ 8/109] Installing libgfortran-0:14.2 100% | 276.8 MiB/s | 3.0 MiB | 00m00s [ 9/109] Installing libmpc-0:1.3.1-6.f 100% | 81.1 MiB/s | 166.2 KiB | 00m00s [ 10/109] Installing boost-regex-0:1.83 100% | 132.8 MiB/s | 272.0 KiB | 00m00s [ 11/109] Installing python-rpm-macros- 100% | 22.3 MiB/s | 22.8 KiB | 00m00s [ 12/109] Installing libquadmath-0:14.2 100% | 159.8 MiB/s | 327.2 KiB | 00m00s [ 13/109] Installing boost-context-0:1. 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Finish: build setup for libsonata-0.1.23-11.fc42.src.rpm Start: rpmbuild libsonata-0.1.23-11.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1729814400 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.MWnKmF + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + test -d /builddir/build/BUILD/libsonata-0.1.23-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/libsonata-0.1.23-build + /usr/bin/rm -rf /builddir/build/BUILD/libsonata-0.1.23-build + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.SNt8Tj + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + cd /builddir/build/BUILD/libsonata-0.1.23-build + rm -rf libsonata-0.1.23 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/libsonata-0.1.23.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd libsonata-0.1.23 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + GIT_COMMITTER_DATE=@1729814400 + GIT_AUTHOR_DATE=@1729814400 + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'libsonata-0.1.23 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-include-catch-cmake.patch + /usr/bin/git apply --index --reject - Checking patch tests/CMakeLists.txt... Applied patch tests/CMakeLists.txt cleanly. + GIT_COMMITTER_DATE=@1729814400 + GIT_AUTHOR_DATE=@1729814400 + /usr/bin/git commit -q -m 0001-include-catch-cmake.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-use-cpp-17-filesystem.patch + /usr/bin/git apply --index --reject - Checking patch src/config.cpp... Applied patch src/config.cpp cleanly. + GIT_COMMITTER_DATE=@1729814400 + GIT_AUTHOR_DATE=@1729814400 + /usr/bin/git commit -q -m 0002-use-cpp-17-filesystem.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0003-Remove-pybind-redeclarations.patch + /usr/bin/git apply --index --reject - Checking patch python/bindings.cpp... Applied patch python/bindings.cpp cleanly. + GIT_COMMITTER_DATE=@1729814400 + GIT_AUTHOR_DATE=@1729814400 + /usr/bin/git commit -q -m 0003-Remove-pybind-redeclarations.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0004-disable-python-ext-build.patch + /usr/bin/git apply --index --reject - Checking patch setup.py... Applied patch setup.py cleanly. + GIT_COMMITTER_DATE=@1729814400 + GIT_AUTHOR_DATE=@1729814400 + /usr/bin/git commit -q -m 0004-disable-python-ext-build.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0005-set-libdir.patch + /usr/bin/git apply --index --reject - Checking patch CMakeLists.txt... Applied patch CMakeLists.txt cleanly. + GIT_COMMITTER_DATE=@1729814400 + GIT_AUTHOR_DATE=@1729814400 + /usr/bin/git commit -q -m 0005-set-libdir.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0006-adapt-to-fmt-11.patch + /usr/bin/git apply --index --reject - Checking patch src/node_sets.cpp... Applied patch src/node_sets.cpp cleanly. + GIT_COMMITTER_DATE=@1729814400 + GIT_AUTHOR_DATE=@1729814400 + /usr/bin/git commit -q -m 0006-adapt-to-fmt-11.patch --author 'rpm-build ' + rm -rf libsonata.egg-info + rm -rf extlib/Catch2 extlib/Highfive extlib/fmt extlib/nlohmann + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.MJiaeq + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DSONATA_PYTHON=ON -DEXTLIB_FROM_SUBMODULES=OFF -DSONATA_VERSION=0.1.23 -DSONATA_TESTS=ON -DSONATA_CXX_WARNINGS=OFF -DCMAKE_CXX_STANDARD=17 CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_policy): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.14.5") CMake Warning (dev) at /usr/lib64/cmake/HighFive/HighFiveTargetDeps.cmake:55 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib64/cmake/HighFive/HighFiveConfig.cmake:93 (include) CMakeLists.txt:79 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/include (found version "1.83.0") found components: system serialization -- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.3") CMake Warning (dev) at /usr/share/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/share/cmake/pybind11/pybind11Common.cmake:228 (include) /usr/share/cmake/pybind11/pybind11Config.cmake:250 (include) python/CMakeLists.txt:6 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13", minimum required is "3.7") -- Found PythonLibs: /usr/lib64/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets -- Configuring done (1.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose Change Dir: '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2 /usr/bin/cmake -S/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 -B/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/CMakeFiles /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/sonata_shared.dir/build.make CMakeFiles/sonata_shared.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/CMakeFiles/sonata_shared.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f CMakeFiles/sonata_static.dir/build.make CMakeFiles/sonata_static.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/sonata_shared.dir/build.make CMakeFiles/sonata_shared.dir/build cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/nodes.cpp.o -MF CMakeFiles/sonata_shared.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/nodes.cpp [ 44%] Building CXX object CMakeFiles/sonata_static.dir/src/population.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/population.cpp.o -MF CMakeFiles/sonata_static.dir/src/population.cpp.o.d -o CMakeFiles/sonata_static.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/population.cpp [ 47%] Building CXX object CMakeFiles/sonata_shared.dir/src/population.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/population.cpp.o -MF CMakeFiles/sonata_shared.dir/src/population.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/population.cpp [ 50%] Building CXX object CMakeFiles/sonata_static.dir/src/report_reader.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_static.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/report_reader.cpp [ 52%] Building CXX object CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/report_reader.cpp [ 55%] Building CXX object CMakeFiles/sonata_static.dir/src/utils.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/utils.cpp.o -MF CMakeFiles/sonata_static.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_static.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/utils.cpp [ 58%] Building CXX object CMakeFiles/sonata_static.dir/src/version.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/version.cpp.o -MF CMakeFiles/sonata_static.dir/src/version.cpp.o.d -o CMakeFiles/sonata_static.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/src/version.cpp [ 61%] Linking CXX static library libsonata.a /usr/bin/cmake -P CMakeFiles/sonata_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsonata.a CMakeFiles/sonata_static.dir/src/common.cpp.o CMakeFiles/sonata_static.dir/src/config.cpp.o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o CMakeFiles/sonata_static.dir/src/edges.cpp.o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o CMakeFiles/sonata_static.dir/src/nodes.cpp.o CMakeFiles/sonata_static.dir/src/population.cpp.o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o CMakeFiles/sonata_static.dir/src/utils.cpp.o CMakeFiles/sonata_static.dir/src/version.cpp.o /usr/bin/ranlib libsonata.a gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [ 61%] Built target sonata_static [ 64%] Building CXX object CMakeFiles/sonata_shared.dir/src/utils.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/utils.cpp.o -MF CMakeFiles/sonata_shared.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/utils.cpp /usr/bin/gmake -f python/CMakeFiles/sonata_python.dir/build.make python/CMakeFiles/sonata_python.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python/CMakeFiles/sonata_python.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f python/CMakeFiles/sonata_python.dir/build.make python/CMakeFiles/sonata_python.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [ 67%] Building CXX object python/CMakeFiles/sonata_python.dir/bindings.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -Dsonata_python_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT python/CMakeFiles/sonata_python.dir/bindings.cpp.o -MF CMakeFiles/sonata_python.dir/bindings.cpp.o.d -o CMakeFiles/sonata_python.dir/bindings.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp: In lambda function: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp:424:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘pybind11::ssize_t’ {aka ‘long int’} [-Wsign-compare] 424 | for (size_t i = 0; i < raw.shape(0); ++i) { | ~~^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include/bbp/sonata/edges.h:13, from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include/bbp/sonata/config.h:20, from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp:6: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include/bbp/sonata/population.h: In instantiation of ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = const long int*]’: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp:430:46: required from here 430 | return Selection::fromValues(raw.data(0), raw.data(raw.shape(0))); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include/bbp/sonata/population.h:77:15: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘long unsigned int’ [-Wsign-compare] 77 | if (v == range.second) { | ~~^~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/sonata_shared.dir/src/version.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/version.cpp.o -MF CMakeFiles/sonata_shared.dir/src/version.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/src/version.cpp [ 73%] Linking CXX shared library libsonata.so /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsonata.so.0.1 -o libsonata.so.0.1.23 CMakeFiles/sonata_shared.dir/src/common.cpp.o CMakeFiles/sonata_shared.dir/src/config.cpp.o CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o CMakeFiles/sonata_shared.dir/src/edges.cpp.o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o CMakeFiles/sonata_shared.dir/src/population.cpp.o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o CMakeFiles/sonata_shared.dir/src/utils.cpp.o CMakeFiles/sonata_shared.dir/src/version.cpp.o /usr/lib64/libhdf5.so [ 76%] Linking CXX shared module _libsonata.cpython-313-x86_64-linux-gnu.so cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_python.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o _libsonata.cpython-313-x86_64-linux-gnu.so CMakeFiles/sonata_python.dir/bindings.cpp.o ../libsonata.a /usr/lib64/libhdf5.so /usr/bin/cmake -E cmake_symlink_library libsonata.so.0.1.23 libsonata.so.0.1 libsonata.so gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [ 76%] Built target sonata_shared /usr/bin/gmake -f tests/CMakeFiles/unittests.dir/build.make tests/CMakeFiles/unittests.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests/CMakeFiles/unittests.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f tests/CMakeFiles/unittests.dir/build.make tests/CMakeFiles/unittests.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [ 79%] Building CXX object tests/CMakeFiles/unittests.dir/main.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/main.cpp.o -MF CMakeFiles/unittests.dir/main.cpp.o.d -o CMakeFiles/unittests.dir/main.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/main.cpp [ 82%] Building CXX object tests/CMakeFiles/unittests.dir/test_config.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_config.cpp.o -MF CMakeFiles/unittests.dir/test_config.cpp.o.d -o CMakeFiles/unittests.dir/test_config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp In file included from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp:1: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp: In function ‘void C_A_T_C_H_T_E_S_T_0()’: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp:51:44: warning: ignoring return value of ‘static nlohmann::json_abi_v3_11_3::basic_json nlohmann::json_abi_v3_11_3::basic_json::parse(InputType&&, parser_callback_t, bool, bool) [with InputType = const std::__cxx11::basic_string&; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector; CustomBaseClass = void; parser_callback_t = std::function&)>]’, declared with attribute ‘warn_unused_result’ [-Wunused-result] 51 | CHECK_NOTHROW(nlohmann::json::parse(config.getExpandedJSON())); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp:3: /usr/include/nlohmann/json.hpp:4015:23: note: declared here 4015 | static basic_json parse(InputType&& i, | ^~~~~ /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp: In function ‘void C_A_T_C_H_T_E_S_T_5()’: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp:391:44: warning: ignoring return value of ‘static nlohmann::json_abi_v3_11_3::basic_json nlohmann::json_abi_v3_11_3::basic_json::parse(InputType&&, parser_callback_t, bool, bool) [with InputType = const std::__cxx11::basic_string&; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector; CustomBaseClass = void; parser_callback_t = std::function&)>]’, declared with attribute ‘warn_unused_result’ [-Wunused-result] 391 | CHECK_NOTHROW(nlohmann::json::parse(config.getExpandedJSON())); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/nlohmann/json.hpp:4015:23: note: declared here 4015 | static basic_json parse(InputType&& i, | ^~~~~ cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/strip /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python/_libsonata.cpython-313-x86_64-linux-gnu.so gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [ 82%] Built target sonata_python [ 85%] Building CXX object tests/CMakeFiles/unittests.dir/test_edges.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_edges.cpp.o -MF CMakeFiles/unittests.dir/test_edges.cpp.o.d -o CMakeFiles/unittests.dir/test_edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_edges.cpp [ 88%] Building CXX object tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o -MF CMakeFiles/unittests.dir/test_node_sets.cpp.o.d -o CMakeFiles/unittests.dir/test_node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_node_sets.cpp [ 91%] Building CXX object tests/CMakeFiles/unittests.dir/test_nodes.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_nodes.cpp.o -MF CMakeFiles/unittests.dir/test_nodes.cpp.o.d -o CMakeFiles/unittests.dir/test_nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_nodes.cpp [ 94%] Building CXX object tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o -MF CMakeFiles/unittests.dir/test_report_reader.cpp.o.d -o CMakeFiles/unittests.dir/test_report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp [ 97%] Building CXX object tests/CMakeFiles/unittests.dir/test_selection.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_selection.cpp.o -MF CMakeFiles/unittests.dir/test_selection.cpp.o.d -o CMakeFiles/unittests.dir/test_selection.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_selection.cpp In file included from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp:1: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp: In function ‘void testTimes(const std::vector&, double, double, int)’: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp:8:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 8 | REQUIRE(size == vec.size()); | ~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp:9:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 9 | for (int i = 0; i < vec.size(); ++i) { | ~~^~~~~~~~~~~~ [100%] Linking CXX executable unittests cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unittests.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/unittests.dir/main.cpp.o CMakeFiles/unittests.dir/test_config.cpp.o CMakeFiles/unittests.dir/test_edges.cpp.o CMakeFiles/unittests.dir/test_node_sets.cpp.o CMakeFiles/unittests.dir/test_nodes.cpp.o CMakeFiles/unittests.dir/test_report_reader.cpp.o CMakeFiles/unittests.dir/test_selection.cpp.o -o unittests -Wl,-rpath,/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build ../libsonata.so.0.1.23 /usr/lib64/libhdf5.so cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/cmake -D TEST_TARGET=unittests -D TEST_EXECUTABLE=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests/unittests -D TEST_EXECUTOR= -D TEST_WORKING_DIR=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests -D TEST_SPEC= -D TEST_EXTRA_ARGS= -D TEST_PROPERTIES= -D TEST_PREFIX= -D TEST_SUFFIX= -D TEST_LIST=unittests_TESTS -D TEST_REPORTER= -D TEST_OUTPUT_DIR= -D TEST_OUTPUT_PREFIX= -D TEST_OUTPUT_SUFFIX= -D CTEST_FILE=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests/unittests_tests-b12d07c.cmake -P /usr/lib64/cmake/Catch2/CatchAddTests.cmake gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [100%] Built target unittests gmake[1]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/CMakeFiles 0 + export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + cp -a README.rst redhat-linux-build + cp -a setup.py redhat-linux-build + cp -a pyproject.toml redhat-linux-build + cp -a COPYING.LESSER redhat-linux-build + cp -a MANIFEST.in redhat-linux-build + mkdir -p redhat-linux-build/python/libsonata/ + cp -a python/libsonata/__init__.py redhat-linux-build/python/libsonata ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + pushd redhat-linux-build + mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir Processing /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running dist_info creating /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-p54cryd9/libsonata.egg-info writing /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-p54cryd9/libsonata.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-p54cryd9/libsonata.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-p54cryd9/libsonata.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-p54cryd9/libsonata.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-p54cryd9/libsonata.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-p54cryd9/libsonata.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'include' warning: no files found matching 'CMakeLists.txt' warning: no files found matching 'extlib/CMakeLists.txt' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching 'extlib/filesystem.hpp' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING.LESSER' writing manifest file '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-p54cryd9/libsonata.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-p54cryd9/libsonata-0.1.23.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: libsonata Building wheel for libsonata (pyproject.toml): started Running command Building wheel for libsonata (pyproject.toml) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-313 creating build/lib.linux-x86_64-cpython-313/libsonata copying python/libsonata/__init__.py -> build/lib.linux-x86_64-cpython-313/libsonata running build_ext installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/libsonata copying build/lib.linux-x86_64-cpython-313/libsonata/__init__.py -> build/bdist.linux-x86_64/wheel/./libsonata running install_egg_info running egg_info creating python/libsonata.egg-info writing python/libsonata.egg-info/PKG-INFO writing dependency_links to python/libsonata.egg-info/dependency_links.txt writing requirements to python/libsonata.egg-info/requires.txt writing top-level names to python/libsonata.egg-info/top_level.txt writing manifest file 'python/libsonata.egg-info/SOURCES.txt' reading manifest file 'python/libsonata.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'include' warning: no files found matching 'CMakeLists.txt' warning: no files found matching 'extlib/CMakeLists.txt' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching 'extlib/filesystem.hpp' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING.LESSER' writing manifest file 'python/libsonata.egg-info/SOURCES.txt' Copying python/libsonata.egg-info to build/bdist.linux-x86_64/wheel/./libsonata-0.1.23-py3.13.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/libsonata-0.1.23.dist-info/WHEEL creating '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-wheel-o7qb7dus/.tmp-ls845ajt/libsonata-0.1.23-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'libsonata/__init__.py' adding 'libsonata-0.1.23.dist-info/COPYING.LESSER' adding 'libsonata-0.1.23.dist-info/METADATA' adding 'libsonata-0.1.23.dist-info/WHEEL' adding 'libsonata-0.1.23.dist-info/top_level.txt' adding 'libsonata-0.1.23.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for libsonata (pyproject.toml): finished with status 'done' Created wheel for libsonata: filename=libsonata-0.1.23-cp313-cp313-linux_x86_64.whl size=8519 sha256=7c901dd428a726ac15c714f1566ce1788bb28bdfe1a27bbdf9bd40a986142168 Stored in directory: /builddir/.cache/pip/wheels/4c/00/f7/4a34f1c54e616a8baccb759d4c3d12096f209c7b5f68a68b5e Successfully built libsonata + popd ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + pushd tests/data ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/data ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + /usr/bin/python3 generate.py ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + popd + mkdir -p redhat-linux-build/tests + cp -a tests/data redhat-linux-build/tests + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.DjIsHl + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + '[' /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT ++ dirname /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT + mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build + mkdir /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + DESTDIR=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "" -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/libsonata.so.0.1.23 -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/libsonata.so.0.1 -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/libsonata.so -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/libsonata.a -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/common.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/config.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/edges.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/node_sets.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/nodes.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/optional.hpp -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/population.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/report_reader.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/variant.hpp -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/sonata/CMake/sonata-config.cmake -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/sonata/CMake/sonata-targets.cmake -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/sonata/CMake/sonata-targets-noconfig.cmake + rm -rf /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT//usr/lib64/libsonata.a + install -p -m 0655 -D -t /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT//usr/lib64/python3.13/site-packages/libsonata/ redhat-linux-build/python/_libsonata.cpython-313-x86_64-linux-gnu.so + export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + pushd redhat-linux-build ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 ++ ls /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir/libsonata-0.1.23-cp313-cp313-linux_x86_64.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=libsonata==0.1.23 + '[' -z libsonata==0.1.23 ']' + TMPDIR=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir libsonata==0.1.23 Using pip 24.2 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir Processing /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir/libsonata-0.1.23-cp313-cp313-linux_x86_64.whl Installing collected packages: libsonata Successfully installed libsonata-0.1.23 + '[' -d /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-11.fc42.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + site_dirs+=("/usr/lib64/python3.13/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT --record /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/RECORD --output /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-11.fc42.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/RECORD removed '/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/RECORD' + rm -fv /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/REQUESTED removed '/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-11.fc42.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-11.fc42.x86_64-pyproject-files --output-modules /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-11.fc42.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-11.fc42.x86_64-pyproject-record --prefix /usr -l libsonata ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + popd + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.1.23-11.fc42 --unique-debug-suffix -0.1.23-11.fc42.x86_64 --unique-debug-src-base libsonata-0.1.23-11.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/libsonata-0.1.23-11.fc42.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents Scanned 28 directories and 50 files, processed 1 inodes, 1 modified (0 replaced + 1 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/libsonata-0.1.23-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Szy29t + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j2 tests Internal ctest changing into directory: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build Test project /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build Start 1: Selection Start 2: SpikeReader 1/30 Test #1: Selection ....................................... Passed 0.00 sec Start 3: SomaReportReader limits 2/30 Test #2: SpikeReader ..................................... Passed 0.01 sec Start 4: SomaReportReader 3/30 Test #3: SomaReportReader limits ......................... Passed 0.01 sec Start 5: ElementReportReader limits 4/30 Test #4: SomaReportReader ................................ Passed 0.01 sec Start 6: ElementReportReader 5/30 Test #5: ElementReportReader limits ...................... Passed 0.01 sec Start 7: NodePopulation 6/30 Test #6: ElementReportReader ............................. Passed 0.01 sec Start 8: NodePopulationMove 7/30 Test #7: NodePopulation .................................. Passed 0.01 sec Start 9: NodePopulationSelectAll 8/30 Test #8: NodePopulationMove .............................. Passed 0.01 sec Start 10: NodePopulationmatchAttributeValues 9/30 Test #9: NodePopulationSelectAll ......................... Passed 0.01 sec Start 11: NodePopulationmatchAttributeValues - int8_t 10/30 Test #10: NodePopulationmatchAttributeValues .............. Passed 0.01 sec Start 12: NodePopulationmatchAttributeValues - uint8_t 11/30 Test #11: NodePopulationmatchAttributeValues - int8_t ..... Passed 0.01 sec Start 13: NodePopulationmatchAttributeValues - int16_t 12/30 Test #12: NodePopulationmatchAttributeValues - uint8_t .... Passed 0.01 sec Start 14: NodePopulationmatchAttributeValues - uint16_t 13/30 Test #13: NodePopulationmatchAttributeValues - int16_t .... Passed 0.01 sec Start 15: NodePopulationmatchAttributeValues - int32_t 14/30 Test #14: NodePopulationmatchAttributeValues - uint16_t ... Passed 0.01 sec Start 16: NodePopulationmatchAttributeValues - uint32_t 15/30 Test #15: NodePopulationmatchAttributeValues - int32_t .... Passed 0.01 sec Start 17: NodePopulationmatchAttributeValues - int64_t 16/30 Test #16: NodePopulationmatchAttributeValues - uint32_t ... Passed 0.01 sec Start 18: NodePopulationmatchAttributeValues - uint64_t 17/30 Test #17: NodePopulationmatchAttributeValues - int64_t .... Passed 0.01 sec Start 19: NodeSetParse 18/30 Test #18: NodePopulationmatchAttributeValues - uint64_t ... Passed 0.01 sec Start 20: NodeSetBasic 19/30 Test #19: NodeSetParse .................................... Passed 0.01 sec Start 21: NodeSetCompound 20/30 Test #20: NodeSetBasic .................................... Passed 0.01 sec Start 22: NodeSet 21/30 Test #22: NodeSet ......................................... Passed 0.00 sec Start 23: EdgePopulation 22/30 Test #21: NodeSetCompound ................................. Passed 0.01 sec Start 24: EdgePopulationSelectAll 23/30 Test #24: EdgePopulationSelectAll ......................... Passed 0.01 sec Start 25: EdgePopulation::writeIndices 24/30 Test #23: EdgePopulation .................................. Passed 0.01 sec Start 26: EdgeStorage 25/30 Test #25: EdgePopulation::writeIndices .................... Passed 0.01 sec Start 27: CircuitConfig 26/30 Test #26: EdgeStorage ..................................... Passed 0.01 sec Start 28: SimulationConfig 27/30 Test #27: CircuitConfig ................................... Passed 0.01 sec Start 29: SONATA 28/30 Test #29: SONATA .......................................... Passed 0.00 sec Start 30: unittests 29/30 Test #28: SimulationConfig ................................ Passed 0.01 sec 30/30 Test #30: unittests ....................................... Passed 0.03 sec 100% tests passed, 0 tests failed out of 30 Total Test time (real) = 0.13 sec + pushd python/tests ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/tests ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + export PYTHONPATH=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT//usr/lib64/python3.13/site-packages/ + PYTHONPATH=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT//usr/lib64/python3.13/site-packages/ + /usr/bin/python3 -m unittest -v test_astrocyte_properties (test_config.TestCircuitConfig.test_astrocyte_properties) ... ok test_basic (test_config.TestCircuitConfig.test_basic) ... ok test_biophysical_properties_raises (test_config.TestCircuitConfig.test_biophysical_properties_raises) ... ok test_duplicate_population (test_config.TestCircuitConfig.test_duplicate_population) ... ok test_endfeet_properties (test_config.TestCircuitConfig.test_endfeet_properties) ... ok test_expanded_json (test_config.TestCircuitConfig.test_expanded_json) ... ok test_get_population_properties (test_config.TestCircuitConfig.test_get_population_properties) ... ok test_partial (test_config.TestCircuitConfig.test_partial) ... ok test_shadowing_morphs (test_config.TestCircuitConfig.test_shadowing_morphs) ... ok test_spatial_directories (test_config.TestCircuitConfig.test_spatial_directories) ... ok test_vasculature_properties (test_config.TestCircuitConfig.test_vasculature_properties) ... ok test_basic (test_config.TestSimulationConfig.test_basic) ... ok test_empty_connection_overrides (test_config.TestSimulationConfig.test_empty_connection_overrides) ... ok test_expanded_json (test_config.TestSimulationConfig.test_expanded_json) ... ok test_run (test_config.TestSimulationConfig.test_run) ... ok test_simulation_config_failures (test_config.TestSimulationConfig.test_simulation_config_failures) ... ok test_BasicScalarAnded (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarAnded) ... ok test_BasicScalarEnum (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarEnum) ... ok test_BasicScalarInt (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarInt) ... ok test_BasicScalarNodeId (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarNodeId) ... ok test_BasicScalarPopulation (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarPopulation) ... ok test_BasicScalarString (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarString) ... ok test_NodeSetCompound (test_nodesets.TestNodePopulationNodeSet.test_NodeSetCompound) ... ok test_NodeSetEmptyArray (test_nodesets.TestNodePopulationNodeSet.test_NodeSetEmptyArray) ... ok test_NodeSet_toJSON (test_nodesets.TestNodePopulationNodeSet.test_NodeSet_toJSON) ... ok test_library_datatype (test_nodesets.TestNodePopulationNodeSet.test_library_datatype) ... ok test_BasicScalarFailFloat (test_nodesets.TestNodeSetFailure.test_BasicScalarFailFloat) ... ok test_BasicScalarFailNegativeNodeIds (test_nodesets.TestNodeSetFailure.test_BasicScalarFailNegativeNodeIds) ... ok test_BasicScalarFailPopulation (test_nodesets.TestNodeSetFailure.test_BasicScalarFailPopulation) ... ok test_CorrectStructure (test_nodesets.TestNodeSetFailure.test_CorrectStructure) ... ok test_FailCompoundWithInt (test_nodesets.TestNodeSetFailure.test_FailCompoundWithInt) ... ok test_FaileRecursiveCompound (test_nodesets.TestNodeSetFailure.test_FaileRecursiveCompound) ... ok test_MissingBasic (test_nodesets.TestNodeSetFailure.test_MissingBasic) ... ok test_MissingFile (test_nodesets.TestNodeSetFailure.test_MissingFile) ... ok test_afferent_edges (test_population.TestEdgePopulation.test_afferent_edges) ... ok test_connecting_edges (test_population.TestEdgePopulation.test_connecting_edges) ... ok test_efferent_edges (test_population.TestEdgePopulation.test_efferent_edges) ... ok test_library_enumeration (test_population.TestEdgePopulation.test_library_enumeration) ... ok test_select_all (test_population.TestEdgePopulation.test_select_all) ... ok test_source (test_population.TestEdgePopulation.test_source) ... ok test_source_nodes (test_population.TestEdgePopulation.test_source_nodes) ... ok test_target (test_population.TestEdgePopulation.test_target) ... ok test_target_nodes (test_population.TestEdgePopulation.test_target_nodes) ... ok test_path_ctor (test_population.TestMisc.test_path_ctor) ... ok test_attribute_names (test_population.TestNodePopulation.test_attribute_names) ... ok test_enumeration_names (test_population.TestNodePopulation.test_enumeration_names) ... ok test_enumeration_values (test_population.TestNodePopulation.test_enumeration_values) ... ok test_get_attribute (test_population.TestNodePopulation.test_get_attribute) ... ok test_get_dynamics_attribute (test_population.TestNodePopulation.test_get_dynamics_attribute) ... ok test_match_values (test_population.TestNodePopulation.test_match_values) ... ok test_name (test_population.TestNodePopulation.test_name) ... ok test_select_all (test_population.TestNodePopulation.test_select_all) ... ok test_size (test_population.TestNodePopulation.test_size) ... ok test_basic (test_population.TestSelection.test_basic) ... ok test_comparison (test_population.TestSelection.test_comparison) ... ok test_dtypes (test_population.TestSelection.test_dtypes) ... ok test_from_ranges (test_population.TestSelection.test_from_ranges) ... ok test_from_values (test_population.TestSelection.test_from_values) ... ok test_from_values_empty (test_population.TestSelection.test_from_values_empty) ... ok test_union_intersection (test_population.TestSelection.test_union_intersection) ... ok test_block_gap_limit (test_reports.TestElementReportReader.test_block_gap_limit) ... ok test_get_all_population (test_reports.TestElementReportReader.test_get_all_population) ... ok test_get_inexistant_population (test_reports.TestElementReportReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.14.5): #000: ../../src/H5G.c line 437 in H5Gopen2(): unable to synchronously open group major: Symbol table minor: Unable to create file #001: ../../src/H5G.c line 399 in H5G__open_api_common(): unable to open group major: Symbol table minor: Can't open object #002: ../../src/H5VLcallback.c line 4354 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLcallback.c line 4321 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #004: ../../src/H5VLnative_group.c line 153 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #005: ../../src/H5Gint.c line 380 in H5G__open_name(): group not found major: Symbol table minor: Object not found #006: ../../src/H5Gloc.c line 424 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 824 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #008: ../../src/H5Gtraverse.c line 596 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #009: ../../src/H5Gloc.c line 381 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_node_id_element_id_mapping (test_reports.TestElementReportReader.test_get_node_id_element_id_mapping) ... ok test_get_node_ids (test_reports.TestElementReportReader.test_get_node_ids) ... ok test_get_population (test_reports.TestElementReportReader.test_get_population) ... ok test_get_reports_from_population (test_reports.TestElementReportReader.test_get_reports_from_population) ... ok test_block_gap_limit (test_reports.TestSomaReportReader.test_block_gap_limit) ... ok test_get_all_population (test_reports.TestSomaReportReader.test_get_all_population) ... ok test_get_inexistant_population (test_reports.TestSomaReportReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.14.5): #000: ../../src/H5G.c line 437 in H5Gopen2(): unable to synchronously open group major: Symbol table minor: Unable to create file #001: ../../src/H5G.c line 399 in H5G__open_api_common(): unable to open group major: Symbol table minor: Can't open object #002: ../../src/H5VLcallback.c line 4354 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLcallback.c line 4321 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #004: ../../src/H5VLnative_group.c line 153 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #005: ../../src/H5Gint.c line 380 in H5G__open_name(): group not found major: Symbol table minor: Object not found #006: ../../src/H5Gloc.c line 424 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 824 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #008: ../../src/H5Gtraverse.c line 596 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #009: ../../src/H5Gloc.c line 381 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_node_id_element_id_mapping (test_reports.TestSomaReportReader.test_get_node_id_element_id_mapping) ... ok test_get_population (test_reports.TestSomaReportReader.test_get_population) ... ok test_get_reports_from_population (test_reports.TestSomaReportReader.test_get_reports_from_population) ... ok test_getTimes_from_population (test_reports.TestSpikeReader.test_getTimes_from_population) ... ok test_get_all_populations (test_reports.TestSpikeReader.test_get_all_populations) ... ok test_get_inexistant_population (test_reports.TestSpikeReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.14.5): #000: ../../src/H5G.c line 437 in H5Gopen2(): unable to synchronously open group major: Symbol table minor: Unable to create file #001: ../../src/H5G.c line 399 in H5G__open_api_common(): unable to open group major: Symbol table minor: Can't open object #002: ../../src/H5VLcallback.c line 4354 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLcallback.c line 4321 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #004: ../../src/H5VLnative_group.c line 153 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #005: ../../src/H5Gint.c line 380 in H5G__open_name(): group not found major: Symbol table minor: Object not found #006: ../../src/H5Gloc.c line 424 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 824 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #008: ../../src/H5Gtraverse.c line 596 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #009: ../../src/H5Gloc.c line 381 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_population (test_reports.TestSpikeReader.test_get_population) ... ok test_get_spikes_from_population (test_reports.TestSpikeReader.test_get_spikes_from_population) ... ok ---------------------------------------------------------------------- Ran 78 tests in 0.049s OK + popd ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: libsonata-0.1.23-11.fc42.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.eozW89 + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + cd libsonata-0.1.23 + DOCDIR=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/libsonata + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/README.rst /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/CHANGELOG.md /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/libsonata + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.9Ntbd1 + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + cd libsonata-0.1.23 + LICENSEDIR=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/licenses/libsonata + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/licenses/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/COPYING.LESSER /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/licenses/libsonata + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsonata = 0.1.23-11.fc42 libsonata(x86-64) = 0.1.23-11.fc42 libsonata.so.0.1()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.310()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: libsonata-devel-0.1.23-11.fc42.x86_64 Provides: libsonata-devel = 0.1.23-11.fc42 libsonata-devel(x86-64) = 0.1.23-11.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsonata.so.0.1()(64bit) Processing files: python3-libsonata-0.1.23-11.fc42.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.FEForJ + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + cd libsonata-0.1.23 + DOCDIR=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/python3-libsonata + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/python3-libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/README.rst /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/python3-libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/CHANGELOG.md /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/python3-libsonata + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-libsonata = 0.1.23-11.fc42 python3-libsonata = 0.1.23-11.fc42 python3-libsonata(x86-64) = 0.1.23-11.fc42 python3.13-libsonata = 0.1.23-11.fc42 python3.13dist(libsonata) = 0.1.23 python3dist(libsonata) = 0.1.23 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.310()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 python3.13dist(numpy) >= 1.17.3 rtld(GNU_HASH) Processing files: libsonata-debugsource-0.1.23-11.fc42.x86_64 Provides: libsonata-debugsource = 0.1.23-11.fc42 libsonata-debugsource(x86-64) = 0.1.23-11.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: libsonata-debuginfo-0.1.23-11.fc42.x86_64 Provides: debuginfo(build-id) = e5af513f5ad7034685409a3c82ada15a9dc584be libsonata-debuginfo = 0.1.23-11.fc42 libsonata-debuginfo(x86-64) = 0.1.23-11.fc42 libsonata.so.0.1.23-0.1.23-11.fc42.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsonata-debugsource(x86-64) = 0.1.23-11.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT Wrote: /builddir/build/RPMS/python3-libsonata-0.1.23-11.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-0.1.23-11.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-debugsource-0.1.23-11.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-devel-0.1.23-11.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-debuginfo-0.1.23-11.fc42.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.nryAV3 + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + test -d /builddir/build/BUILD/libsonata-0.1.23-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/libsonata-0.1.23-build + rm -rf /builddir/build/BUILD/libsonata-0.1.23-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild libsonata-0.1.23-11.fc42.src.rpm Finish: build phase for libsonata-0.1.23-11.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1731400446.231082/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/libsonata-0.1.23-11.fc42.src.rpm) Config(child) 4 minutes 12 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "libsonata-devel", "epoch": null, "version": "0.1.23", "release": "11.fc42", "arch": "x86_64" }, { "name": "libsonata-debugsource", "epoch": null, "version": "0.1.23", "release": "11.fc42", "arch": "x86_64" }, { "name": "libsonata", "epoch": null, "version": "0.1.23", "release": "11.fc42", "arch": "x86_64" }, { "name": "libsonata", "epoch": null, "version": "0.1.23", "release": "11.fc42", "arch": "src" }, { "name": "python3-libsonata", "epoch": null, "version": "0.1.23", "release": "11.fc42", "arch": "x86_64" }, { "name": "libsonata-debuginfo", "epoch": null, "version": "0.1.23", "release": "11.fc42", "arch": "x86_64" } ] } RPMResults finished