## START: Set by rpmautospec ## (rpmautospec version 0.6.0) ## RPMAUTOSPEC: autorelease, autochangelog %define autorelease(e:s:pb:n) %{?-p:0.}%{lua: release_number = 13; base_release_number = tonumber(rpm.expand("%{?-b*}%{!?-b:1}")); print(release_number + base_release_number - 1); }%{?-e:.%{-e*}}%{?-s:.%{-s*}}%{!?-n:%{?dist}} ## END: Set by rpmautospec # Require mpi for tests, and seem to hang in Mock, so disabled by default %bcond_with tests %global _description %{expand: \ SpyKING CIRCUS is a python code to allow fast spike sorting on multi channel recordings. A publication on the algorithm can be found at https://elifesciences.org/articles/34518. It has been tested on datasets coming from in vitro retina with 252 electrodes MEA, from in vivo hippocampus with tetrodes, in vivo and in vitro cortex data with 30 and up to 4225 channels, with good results. Synthetic tests on these data show that cells firing at more than 0.5Hz can be detected, and their spikes recovered with error rates at around 1%, even resolving overlapping spikes and synchronous firing. It seems to be compatible with optogenetic stimulation, based on experimental data obtained in the retina.} %global forgeurl https://github.com/spyking-circus/spyking-circus Name: python-spyking-circus Version: 1.1.0 Release: %autorelease Summary: Fast and scalable spike sorting of large-scale extracellular recordings %global tag %{version} %forgemeta License: CeCILL URL: %forgeurl Source0: %forgesource # We install the probe files to datadir Patch0: set-probe-datadir.patch BuildArch: noarch %description %_description %package -n python3-spyking-circus Summary: %{summary} BuildRequires: python3-devel BuildRequires: /usr/bin/patch %if %{with tests} BuildRequires: mpich-devel BuildRequires: python3-mpi4py-mpich BuildRequires: openmpi-devel BuildRequires: python3-mpi4py-openmpi BuildRequires: python3-pytest %endif %description -n python3-spyking-circus %_description %package -n python3-spyking-circus-common Summary: Common files for %{name} %description -n python3-spyking-circus-common %_description # MPICH meta package %package -n python3-spyking-circus-mpich Summary: Meta package for %{name} Requires: python3-mpi4py-mpich Requires: python3-spyking-circus%{?_isa} = %{version}-%{release} %description -n python3-spyking-circus-mpich %_description # OpenMPI meta package %package -n python3-spyking-circus-openmpi Summary: Meta package for %{name} Requires: python3-mpi4py-openmpi Requires: python3-spyking-circus%{?_isa} = %{version}-%{release} %description -n python3-spyking-circus-openmpi %_description %prep %forgeautosetup -S patch # Set the path to datadir sed -i "s|SED_ME|%{_datadir}/spyking-circus/|" setup.py # remove mpi4py from requires, we add it manually sed -i "s/'mpi4py', //" setup.py # Remove env find . -type f -name "*.py" -exec sed -i '/^#![ ]*\/usr\/bin\/env.*$/ d' {} 2>/dev/null ';' # Remove nose from tests: we use pytest sed -i 's/nose,//' tests/__init__.py %generate_buildrequires %pyproject_buildrequires %build %pyproject_wheel %install %pyproject_install # remove duplicate installed files mkdir -m 0755 -p $RPM_BUILD_ROOT/%{_datadir}/spyking-circus/ mv $RPM_BUILD_ROOT/%{python3_sitelib}/usr/share/spyking-circus/* $RPM_BUILD_ROOT/%{_datadir}/spyking-circus/ rm -rf $RPM_BUILD_ROOT/%{python3_sitelib}/usr/ %pyproject_save_files -l circus %check %if %{with tests} %{_mpich_load} %{pytest} tests/ %{_mpich_unload} %{_openmpi_load} %{pytest} tests/ %{_openmpi_unload} %endif %files -n python3-spyking-circus -f %{pyproject_files} %doc README.rst %{_bindir}/circus-artefacts %{_bindir}/circus-folders %{_bindir}/circus-gui-matlab %{_bindir}/circus-gui-python %{_bindir}/circus-multi %{_bindir}/spyking-circus %{_bindir}/spyking-circus-launcher %{_bindir}/spyking-circus-subtask %{_datadir}/spyking-circus %changelog ## START: Generated by rpmautospec * Fri Jul 19 2024 Fedora Release Engineering - 1.1.0-13 - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild * Sat Jun 15 2024 Python Maint - 1.1.0-12 - Rebuilt for Python 3.13 * Fri Jan 26 2024 Fedora Release Engineering - 1.1.0-11 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Mon Jan 22 2024 Fedora Release Engineering - 1.1.0-10 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Thu Jan 04 2024 Benjamin A. Beasley - 1.1.0-9 - Assert that the .dist-info directory contains a license file * Fri Jul 21 2023 Fedora Release Engineering - 1.1.0-7 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Wed Jul 12 2023 Python Maint - 1.1.0-6 - Rebuilt for Python 3.12 * Fri Jan 20 2023 Fedora Release Engineering - 1.1.0-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Fri Jul 22 2022 Fedora Release Engineering - 1.1.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Wed Jun 29 2022 Python Maint - 1.1.0-3 - Rebuilt for Python 3.11 * Fri Jan 21 2022 Fedora Release Engineering - 1.1.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Sun Jan 16 2022 Ankur Sinha (Ankur Sinha Gmail) - 1.1.0-1 - feat: update to 1.1.0 * Fri Jul 23 2021 Fedora Release Engineering - 0.9.7-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Fri Jun 04 2021 Python Maint - 0.9.7-5 - Rebuilt for Python 3.10 * Wed Jan 27 2021 Fedora Release Engineering - 0.9.7-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Wed Jul 29 2020 Fedora Release Engineering - 0.9.7-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Tue May 26 2020 Miro Hrončok - 0.9.7-2 - Rebuilt for Python 3.9 * Sun Apr 26 2020 Ankur Sinha - 0.9.7-1 - Update for review - Remove mpi4py from auto-requires: we add them explicitly for the mpi implementations - Correct readme.txt * Sat Apr 25 2020 Ankur Sinha - 0.9.7-1 - Initial build ## END: Generated by rpmautospec