Name:		minimap2
Version:	2.30
Release:	1%{?dist}
Summary:	A versatile pairwise aligner for genomic and spliced nucleotide sequences

License:	MIT
URL:		https://lh3.github.io/minimap2/
Source0:	https://github.com/lh3/%{name}/archive/refs/tags/v%{version}.tar.gz
# Set up SIMDe capable compilation
# https://salsa.debian.org/med-team/minimap2/-/blob/master/debian/patches/simde
Patch0:		minimap2-2.30-simde.patch
# Propagate LDFLAGS and other user-supplied options
# https://github.com/lh3/minimap2/pull/1168
Patch1:         minimap2-2.30-propagate-build-flags.patch

BuildRequires:	make
BuildRequires:	gcc
BuildRequires:	zlib-devel
BuildRequires:	simde-devel


%description
Minimap2 is a versatile sequence alignment program that aligns DNA or
mRNA sequences against a large reference database. Typical use cases
include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
human genome; (2) finding overlaps between long reads with error rate
up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore
cDNA or Direct RNA reads against a reference genome; (4) aligning
Illumina single- or paired-end reads; (5) assembly-to-assembly
alignment; (6) full-genome alignment between two closely related
species with divergence below ~15%.


%prep
%autosetup


%build
%ifarch x86_64
  %make_build
%else
  %ifarch aarch64
    %make_build -f Makefile.simde arm_neon=1 aarch64=1
  %else
    %make_build -f Makefile.simde
  %endif
%endif


%install
rm -rf %{buildroot}
mkdir -p %{buildroot}%{_bindir}
install -m 0755 minimap2 %{buildroot}%{_bindir}

mkdir -p %{buildroot}%{_mandir}/man1
install -m 0644 minimap2.1 %{buildroot}%{_mandir}/man1/


%files
%license LICENSE.txt
%doc cookbook.md FAQ.md NEWS.md README.md test
%{_bindir}/minimap2
%{_mandir}/man1/minimap2.1.gz


%changelog
* Wed Feb 11 2026 Rasmus Ory Nielsen <ron@ron.dk> - 2.30-1
- Initial build