Name: bout++ Version: 5.1.1 Release: %autorelease Summary: Library for the BOUndary Turbulence simulation framework # BOUT++ itself is LGPL, but we are linking with GPLed code, so the distributed library is GPL # Automatically converted from old format: GPLv3+ - review is highly recommended. License: GPL-3.0-or-later URL: https://boutproject.github.io/ Source0: https://github.com/boutproject/BOUT-dev/releases/download/v%{version}/BOUT++-v%{version}.tar.xz Patch0: test-timeout.patch Patch1: https://patch-diff.githubusercontent.com/raw/boutproject/BOUT-dev/pull/3141.patch # https://fedoraproject.org/wiki/Changes/EncourageI686LeafRemoval ExcludeArch: %{ix86} %if 0%{?fedora} >= 33 %bcond_without flexiblas %else %bcond_with flexiblas %endif # Disable tests and manual on epel < 8 %if 0%{?rhel} && 0%{?rhel} < 8 %bcond_with manual %bcond_with test %bcond_with sundials %bcond_with petsc %else %bcond_without manual %bcond_without test %bcond_without sundials %bcond_without petsc %endif # Enable both mpi every where %bcond_without mpich %bcond_without openmpi %if 0%{?fedora} || ( 0%{?rhel} && 0%{?rhel} > 7 ) # Use system mpark %bcond_without system_mpark %else %bcond_with system_mpark %endif # # DEPENDENCIES # BuildRequires: m4 BuildRequires: zlib-devel BuildRequires: cmake BuildRequires: gettext-devel BuildRequires: environment-modules BuildRequires: netcdf-devel BuildRequires: netcdf-cxx%{?fedora:4}-devel BuildRequires: hdf5-devel BuildRequires: fftw-devel BuildRequires: make BuildRequires: fmt-devel BuildRequires: chrpath BuildRequires: python%{python3_pkgversion} BuildRequires: python%{python3_pkgversion}-numpy BuildRequires: python%{python3_pkgversion}-cython BuildRequires: python%{python3_pkgversion}-netcdf4 BuildRequires: python%{python3_pkgversion}-scipy BuildRequires: python%{python3_pkgversion}-boututils BuildRequires: python%{python3_pkgversion}-boutdata BuildRequires: python%{python3_pkgversion}-zoidberg BuildRequires: python%{python3_pkgversion}-tables %if %{with flexiblas} BuildRequires: flexiblas-devel %else BuildRequires: blas-devel BuildRequires: lapack-devel %endif BuildRequires: gcc-c++ %if %{with system_mpark} BuildRequires: mpark-variant-devel %endif # cxx generation BuildRequires: python%{python3_pkgversion}-jinja2 # Documentation %if %{with manual} BuildRequires: doxygen BuildRequires: python3-sphinx %endif %if %{with petsc} && %{with mpich} BuildRequires: petsc-mpich-devel BuildRequires: hdf5-mpich-devel %endif %if %{with petsc} && %{with openmpi} BuildRequires: petsc-openmpi-devel BuildRequires: hdf5-openmpi-devel %endif %if %{with sundials} && %{with mpich} BuildRequires: sundials-mpich-devel # https://bugzilla.redhat.com/show_bug.cgi?id=1839131 BuildRequires: sundials-devel %endif %if %{with sundials} && %{with openmpi} BuildRequires: sundials-openmpi-devel # https://bugzilla.redhat.com/show_bug.cgi?id=1839131 BuildRequires: sundials-devel %endif # # DESCRIPTIONS # %if %{with mpich} BuildRequires: mpich-devel %global mpi_list mpich %endif %if %{with openmpi} BuildRequires: openmpi-devel %global mpi_list openmpi %{?mpi_list} %endif %description BOUT++ is a framework for writing fluid and plasma simulations in curvilinear geometry. It is intended to be quite modular, with a variety of numerical methods and time-integration solvers available. BOUT++ is primarily designed and tested with reduced plasma fluid models in mind, but it can evolve any number of equations, with equations appearing in a readable form. %if %{with mpich} %package mpich Summary: BOUT++ mpich libraries Requires: %{name}-common = %{version}-%{release} # Use bundled version, to reproduce upstream results Provides: bundled(libpvode) Recommends: environment-modules Recommends: python%{python3_pkgversion}-boututils Recommends: python%{python3_pkgversion}-boutdata Recommends: python%{python3_pkgversion}-xbout %package mpich-devel Summary: BOUT++ mpich libraries Requires: %{name}-mpich = %{version}-%{release} Recommends: gcc-c++ Recommends: make Recommends: mpich-devel Recommends: zlib-devel Recommends: gettext-devel Recommends: netcdf-devel Recommends: netcdf-cxx%{?fedora:4}-devel Recommends: hdf5-devel Recommends: fftw-devel %if %{with flexiblas} Recommends: flexiblas-devel %else Recommends: blas-devel Recommends: lapack-devel %endif %if %{with system_mpark} Recommends: mpark-variant-devel %endif %if %{with petsc} Recommends: petsc-mpich-devel Recommends: hdf5-mpich-devel %endif %if %{with sundials} Recommends: sundials-mpich-devel # https://bugzilla.redhat.com/show_bug.cgi?id=1839131 Recommends: sundials-devel %endif %description mpich-devel BOUT++ is a framework for writing fluid and plasma simulations in curvilinear geometry. It is intended to be quite modular, with a variety of numerical methods and time-integration solvers available. BOUT++ is primarily designed and tested with reduced plasma fluid models in mind, but it can evolve any number of equations, with equations appearing in a readable form. This BOUT++ library is build for mpich. %description mpich BOUT++ is a framework for writing fluid and plasma simulations in curvilinear geometry. It is intended to be quite modular, with a variety of numerical methods and time-integration solvers available. BOUT++ is primarily designed and tested with reduced plasma fluid models in mind, but it can evolve any number of equations, with equations appearing in a readable form. This BOUT++ library is build for mpich. %package -n python%{python3_pkgversion}-%{name}-mpich Summary: BOUT++ mpich library for python%{python3_pkgversion} Requires: %{name}-mpich Requires: python%{python3_pkgversion}-%{name} BuildRequires: python%{python3_pkgversion}-devel Requires: mpich Requires: python%{python3_pkgversion}-mpich Requires: python%{python3_pkgversion}-numpy Requires: python%{python3_pkgversion}-boututils Requires: python%{python3_pkgversion}-boutdata Recommends: python%{python3_pkgversion}-xbout %py_provides python%{python3_pkgversion}-%{name}-mpich %description -n python%{python3_pkgversion}-%{name}-mpich This is the BOUT++ library python%{python3_pkgversion} with mpich. %endif %if %{with openmpi} %package openmpi Summary: BOUT++ openmpi libraries # Use bundled version, to reproduce upstream results Provides: bundled(libpvode) Requires: %{name}-common = %{version}-%{release} Recommends: environment-modules Recommends: python%{python3_pkgversion}-boututils Recommends: python%{python3_pkgversion}-boutdata Recommends: python%{python3_pkgversion}-xbout %package openmpi-devel Summary: BOUT++ openmpi libraries Requires: %{name}-openmpi = %{version}-%{release} Recommends: gcc-c++ Recommends: make Recommends: openmpi-devel Recommends: zlib-devel Recommends: gettext-devel Recommends: netcdf-devel Recommends: netcdf-cxx%{?fedora:4}-devel Recommends: hdf5-devel Recommends: fftw-devel %if %{with flexiblas} Recommends: flexiblas-devel %else Recommends: blas-devel Recommends: lapack-devel %endif %if %{with system_mpark} Recommends: mpark-variant-devel %endif %if %{with petsc} Recommends: petsc-openmpi-devel Recommends: hdf5-openmpi-devel %endif %if %{with sundials} Recommends: sundials-openmpi-devel # https://bugzilla.redhat.com/show_bug.cgi?id=1839131 Recommends: sundials-devel %endif %description openmpi-devel BOUT++ is a framework for writing fluid and plasma simulations in curvilinear geometry. It is intended to be quite modular, with a variety of numerical methods and time-integration solvers available. BOUT++ is primarily designed and tested with reduced plasma fluid models in mind, but it can evolve any number of equations, with equations appearing in a readable form. This BOUT++ library is build for openmpi and provides the required header files. %description openmpi BOUT++ is a framework for writing fluid and plasma simulations in curvilinear geometry. It is intended to be quite modular, with a variety of numerical methods and time-integration solvers available. BOUT++ is primarily designed and tested with reduced plasma fluid models in mind, but it can evolve any number of equations, with equations appearing in a readable form. This BOUT++ library is build for openmpi. %package -n python%{python3_pkgversion}-%{name}-openmpi Summary: BOUT++ openmpi library for python%{python3_pkgversion} Requires: %{name}-openmpi Requires: python%{python3_pkgversion}-%{name} BuildRequires: python%{python3_pkgversion}-devel Requires: openmpi Requires: python%{python3_pkgversion}-openmpi Requires: python%{python3_pkgversion}-numpy Requires: python%{python3_pkgversion}-boututils Requires: python%{python3_pkgversion}-boutdata Recommends: python%{python3_pkgversion}-xbout %py_provides python%{python3_pkgversion}-%{name}-openmpi %description -n python%{python3_pkgversion}-%{name}-openmpi This is the BOUT++ library python%{python3_pkgversion} with openmpi. %endif %package common Summary: Common files for BOUT++ %description common MPI-independent files for BOUT++, namely localisation files. %package -n python%{python3_pkgversion}-%{name} Summary: BOUT++ python library Requires: python%{python3_pkgversion}-netcdf4 Requires: python%{python3_pkgversion}-numpy Recommends: python%{python3_pkgversion}-scipy Recommends: python%{python3_pkgversion}-matplotlib Recommends: python%{python3_pkgversion}-boututils Recommends: python%{python3_pkgversion}-boutdata BuildArch: noarch %py_provides python%{python3_pkgversion}-%{name} %description -n python%{python3_pkgversion}-%{name} Python%{python3_pkgversion} library for pre and post processing of BOUT++ data %if %{with manual} %package -n %{name}-doc Summary: BOUT++ Documentation BuildArch: noarch %description -n %{name}-doc BOUT++ is a framework for writing fluid and plasma simulations in curvilinear geometry. It is intended to be quite modular, with a variety of numerical methods and time-integration solvers available. BOUT++ is primarily designed and tested with reduced plasma fluid models in mind, but it can evolve any number of equations, with equations appearing in a readable form. This package contains the documentation. %endif # # PREP # %prep %autosetup -n BOUT++-v%{version} -N %patch -P 0 -p1 %patch -P 1 -p1 -b .backup # Switch to standard theme # sphinx_book_theme is not packaged sed -e 's/html_theme = "sphinx_book_theme"/html_theme = "sphinxdoc"/' -i manual/sphinx/conf.py %if %{with system_mpark} # use mpark provided by fedora rm -rf externalpackages/mpark.variant/ mkdir -p externalpackages/mpark.variant/include/ %endif rm -rf tools/pylib/boutdata rm -rf tools/pylib/boututils # Remove shebang for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) do sed -i '/^#!\//d' $f done # # BUILD # %build # MPI builds export CC=mpicc export CXX=mpicxx for mpi in %{mpi_list} do mkdir build_$mpi done for mpi in %{mpi_list} do %global _vpath_builddir build_$mpi if [ $mpi = mpich ] ; then %_mpich_load elif [ $mpi = openmpi ] ; then %_openmpi_load else echo "unknown mpi" &> /dev/stderr exit 1 fi %cmake \ -DBOUT_USE_FFTW=ON \ -DBOUT_USE_NETCDF=ON \ -DBOUT_USE_SCOREP=OFF \ -DBOUT_USE_SYSTEM_MPARK_VARIANT=ON \ -DBOUT_USE_LAPACK=ON \ -DBOUT_USE_NLS=ON \ -DBOUT_USE_SYSTEM_FMT=ON \ -DBOUT_USE_UUID_SYSTEM_GENERATOR=ON \ -DCMAKE_INSTALL_PREFIX=/usr \ -DCMAKE_INSTALL_LIBDIR=%{_libdir}/$mpi/lib \ -DCMAKE_INSTALL_BINDIR=%{_libdir}/$mpi/bin \ -DCMAKE_INSTALL_INCLUDEDIR=%{_includedir}/$mpi-%{_arch}/bout++/ \ -DCMAKE_INSTALL_DATAROOTDIR=%{_datadir} \ -DCMAKE_INSTALL_PYTHON_SITEARCH=${MPI_PYTHON3_SITEARCH} \ -DBOUT_TEST_TIMEOUT=900 \ %if %{with manual} -DBOUT_BUILD_DOCS=ON \ %endif %if %{with petsc} -DBOUT_USE_PETSC=ON \ %endif %if %{with sundials} -DBOUT_USE_SUNDIALS=ON \ %endif %cmake_build %if %{with manual} %global _vpath_builddir build_$mpi/manual # Store original values PYPA=${PYTHONPATH} LDPA=${LD_LIBRARY_PATH} # Add our stuff export PYTHONPATH=${PYTHONPATH}:$(pwd)/build_$mpi/tools/pylib/ export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:$(pwd)/build_$mpi/lib/ %cmake_build # Restore export LD_LIBRARY_PATH=$LDPA export PYTHONPATH=$PYPA %endif if [ $mpi = mpich ] ; then %_mpich_unload elif [ $mpi = openmpi ] ; then %_openmpi_unload fi done # # INSTALL # %install for mpi in %{mpi_list} do %global _vpath_builddir build_$mpi if [ $mpi = mpich ] ; then %_mpich_load else %_openmpi_load fi %cmake_install for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') ; do chrpath -r $MPI_LIB $f done rm -rf ${RPM_BUILD_ROOT}/usr/share/bout++ mkdir -p ${RPM_BUILD_ROOT}/usr/share/modulefiles/bout++ cat > ${RPM_BUILD_ROOT}/usr/share/modulefiles/bout++/$MPI_COMPILER <