Warning: Permanently added '98.91.216.185' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10615622-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 1.8 PID: 9587 Logging PID: 9589 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 10615622, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '71a899366331dd562498ce3b58eead6e4bc927f5', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/sagitter/openbabel-3.2.0/openbabel', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'openbabel', 'package_version': '3.2.0-1', 'project_dirname': 'openbabel-3.2.0', 'project_name': 'openbabel-3.2.0', 'project_owner': 'sagitter', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/sagitter/openbabel-3.2.0/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'sagitter/openbabel-3.2.0--sagitter', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 1, 'submitter': 'sagitter', 'tags': [], 'task_id': '10615622-fedora-rawhide-aarch64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/sagitter/openbabel-3.2.0/openbabel /var/lib/copr-rpmbuild/workspace/workdir-lfm4gtnc/openbabel --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/sagitter/openbabel-3.2.0/openbabel', '/var/lib/copr-rpmbuild/workspace/workdir-lfm4gtnc/openbabel', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-lfm4gtnc/openbabel'... Running: git checkout 71a899366331dd562498ce3b58eead6e4bc927f5 -- cmd: ['git', 'checkout', '71a899366331dd562498ce3b58eead6e4bc927f5', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-lfm4gtnc/openbabel rc: 0 stdout: stderr: Note: switching to '71a899366331dd562498ce3b58eead6e4bc927f5'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 71a8993 automatic import of openbabel Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-lfm4gtnc/openbabel rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading openbabel-openbabel-3-2-0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o openbabel-openbabel-3-2-0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/sagitter/openbabel-3.2.0/openbabel/openbabel-openbabel-3-2-0.tar.gz/md5/7ff7d2b8de07fa0507a7826f62d7045a/openbabel-openbabel-3-2-0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 36.06M 100 36.06M 0 0 15.50M 0 00:02 00:02 15.67M INFO: Reading stdout from command: md5sum openbabel-openbabel-3-2-0.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-lfm4gtnc/openbabel/openbabel.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-lfm4gtnc/openbabel --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1781813679.476266 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.7 starting (python version = 3.14.5, NVR = mock-6.7-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-lfm4gtnc/openbabel/openbabel.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-lfm4gtnc/openbabel --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1781813679.476266 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-lfm4gtnc/openbabel/openbabel.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 6.7 INFO: Mock Version: 6.7 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1781813679.476266/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-b9821873-4d5a-4d04-a8aa-1954e62374ae INFO: Checking that cd722bca8e28865761d12fb3206f2193362a9dc678629d04a80669993751a1b6 image matches host's architecture INFO: Copy content of container cd722bca8e28865761d12fb3206f2193362a9dc678629d04a80669993751a1b6 to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1781813679.476266/root INFO: mounting cd722bca8e28865761d12fb3206f2193362a9dc678629d04a80669993751a1b6 with podman image mount INFO: image cd722bca8e28865761d12fb3206f2193362a9dc678629d04a80669993751a1b6 as /var/lib/containers/storage/overlay/de0ef2425bf4acdb9cc0b53466ee83c9d59221eac5791be207918f39aae16807/merged INFO: umounting image cd722bca8e28865761d12fb3206f2193362a9dc678629d04a80669993751a1b6 (/var/lib/containers/storage/overlay/de0ef2425bf4acdb9cc0b53466ee83c9d59221eac5791be207918f39aae16807/merged) with podman image umount INFO: Removing image mock-bootstrap-b9821873-4d5a-4d04-a8aa-1954e62374ae INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1781813679.476266/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-6.fc45.aarch64 rpm-sequoia-1.10.2-2.fc45.aarch64 dnf5-5.4.2.1-3.fc45.aarch64 dnf5-plugins-5.4.2.1-3.fc45.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 31.9 KiB/s | 21.8 KiB | 00m01s fedora 100% | 18.7 MiB/s | 20.7 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 0:5.3.9-3.fc44 fedora 8.4 MiB bzip2 aarch64 0:1.0.8-23.fc44 fedora 171.1 KiB coreutils aarch64 0:9.11-3.fc45 fedora 8.2 MiB cpio aarch64 0:2.15-9.fc44 fedora 1.1 MiB diffutils aarch64 0:3.12-5.fc44 fedora 1.6 MiB fedora-release-common noarch 0:45-0.8 fedora 4.2 KiB findutils aarch64 1:4.10.0-7.fc44 fedora 1.9 MiB gawk aarch64 0:5.4.0-3.fc45 fedora 2.9 MiB glibc-minimal-langpack aarch64 0:2.43.9000-20.fc45 fedora 0.0 B grep aarch64 0:3.12-3.fc44 fedora 1.0 MiB gzip aarch64 0:1.14-2.fc44 fedora 437.5 KiB info aarch64 0:7.3-2.fc45 fedora 424.4 KiB patch aarch64 0:2.8-4.fc44 fedora 262.4 KiB redhat-rpm-config noarch 0:344-2.fc45 fedora 183.7 KiB rpm-build aarch64 0:6.0.1-6.fc45 fedora 598.7 KiB sed aarch64 0:4.10-1.fc45 fedora 943.4 KiB shadow-utils aarch64 2:4.19.3-3.fc45 fedora 4.5 MiB tar aarch64 2:1.35-8.fc44 fedora 3.0 MiB unzip aarch64 0:6.0-69.fc44 fedora 533.8 KiB util-linux aarch64 0:2.42.2-1.fc45 fedora 6.9 MiB which aarch64 0:2.25-1.fc45 fedora 123.6 KiB xz aarch64 1:5.8.3-1.fc45 fedora 1.5 MiB Installing dependencies: R-srpm-macros noarch 0:1.3.7-2.fc45 fedora 3.5 KiB add-determinism aarch64 0:0.7.3-2.fc45 fedora 2.0 MiB alternatives aarch64 0:1.33-5.fc44 fedora 90.1 KiB ansible-srpm-macros noarch 0:1-20.1.fc44 fedora 35.7 KiB audit-libs aarch64 0:4.1.4-2.fc45 fedora 486.7 KiB binutils aarch64 0:2.46.50-10.fc45 fedora 31.5 MiB build-reproducibility-srpm-macros noarch 0:0.7.3-2.fc45 fedora 1.2 KiB bzip2-libs aarch64 0:1.0.8-23.fc44 fedora 72.5 KiB ca-certificates noarch 0:2025.2.80_v9.0.304-7.fc45 fedora 2.7 MiB cmake-srpm-macros noarch 0:4.3.0-3.fc45 fedora 524.0 B coreutils-common aarch64 0:9.11-3.fc45 fedora 10.9 MiB crypto-policies noarch 0:20260331-1.git4c567b2.fc45 fedora 133.2 KiB curl aarch64 0:8.21.0~rc2-1.fc45 fedora 528.8 KiB cyrus-sasl-lib aarch64 0:2.1.28-35.fc44 fedora 2.4 MiB debugedit aarch64 0:5.3-2.fc45 fedora 320.9 KiB dwz aarch64 0:0.16-3.fc44 fedora 322.4 KiB ed aarch64 0:1.22.5-2.fc45 fedora 157.7 KiB efi-srpm-macros noarch 0:6-6.fc44 fedora 40.2 KiB elfutils aarch64 0:0.195-1.fc45 fedora 3.6 MiB elfutils-debuginfod-client aarch64 0:0.195-1.fc45 fedora 143.9 KiB elfutils-libelf aarch64 0:0.195-1.fc45 fedora 1.2 MiB elfutils-libs aarch64 0:0.195-1.fc45 fedora 746.5 KiB erlang-srpm-macros noarch 0:0.3.11-1.fc45 fedora 1.9 KiB fedora-gpg-keys noarch 0:45-0.1 fedora 133.4 KiB fedora-release noarch 0:45-0.8 fedora 0.0 B fedora-release-identity-basic noarch 0:45-0.8 fedora 664.0 B fedora-repos noarch 0:45-0.1 fedora 4.9 KiB fedora-repos-rawhide noarch 0:45-0.1 fedora 2.2 KiB file aarch64 0:5.47-3.fc45 fedora 141.2 KiB file-libs aarch64 0:5.47-3.fc45 fedora 12.2 MiB filesystem aarch64 0:3.18-58.fc45 fedora 112.0 B filesystem-srpm-macros noarch 0:3.18-58.fc45 fedora 38.2 KiB fonts-srpm-macros noarch 1:5.0.0-3.fc45 fedora 55.8 KiB forge-srpm-macros noarch 0:0.4.0-4.fc44 fedora 38.9 KiB fpc-srpm-macros noarch 0:1.3-16.fc44 fedora 144.0 B gap-srpm-macros noarch 0:2-2.fc44 fedora 2.1 KiB gdb-minimal aarch64 0:17.1-10.fc45 fedora 13.5 MiB gdbm-libs aarch64 1:1.23-11.fc44 fedora 233.7 KiB ghc-srpm-macros noarch 0:1.10-1.fc44 fedora 792.0 B glibc aarch64 0:2.43.9000-20.fc45 fedora 6.5 MiB glibc-common aarch64 0:2.43.9000-20.fc45 fedora 1.3 MiB glibc-gconv-extra aarch64 0:2.43.9000-20.fc45 fedora 18.6 MiB gmp aarch64 1:6.3.0-5.fc44 fedora 657.9 KiB gnat-srpm-macros noarch 0:7-2.fc44 fedora 1.0 KiB gnome-srpm-macros noarch 0:1.0-1.fc45 fedora 3.5 KiB gnulib-l10n noarch 0:20241231-3.fc45 fedora 655.0 KiB gnupg2 aarch64 0:2.4.9-16.fc45 fedora 6.4 MiB gnupg2-dirmngr aarch64 0:2.4.9-16.fc45 fedora 646.1 KiB gnupg2-gpg-agent aarch64 0:2.4.9-16.fc45 fedora 846.9 KiB gnupg2-gpgconf aarch64 0:2.4.9-16.fc45 fedora 321.8 KiB gnupg2-keyboxd aarch64 0:2.4.9-16.fc45 fedora 233.2 KiB gnupg2-verify aarch64 0:2.4.9-16.fc45 fedora 364.3 KiB gnutls aarch64 0:3.8.13-1.fc45 fedora 3.7 MiB go-srpm-macros noarch 0:3.8.0-2.fc44 fedora 61.9 KiB gpgverify noarch 0:2.2-4.fc44 fedora 8.7 KiB ima-evm-utils-libs aarch64 0:1.6.2-10.fc45 fedora 92.6 KiB jansson aarch64 0:2.14-4.fc44 fedora 93.0 KiB java-srpm-macros noarch 0:1-8.fc44 fedora 870.0 B json-c aarch64 0:0.18-8.fc44 fedora 138.5 KiB kernel-srpm-macros noarch 0:1.0-29.fc45 fedora 1.9 KiB keyutils-libs aarch64 0:1.6.3-7.fc44 fedora 98.2 KiB krb5-libs aarch64 0:1.22.2-7.fc45 fedora 2.5 MiB libacl aarch64 0:2.3.2-7.fc45 fedora 67.8 KiB libarchive aarch64 0:3.8.7-1.fc45 fedora 975.6 KiB libassuan aarch64 0:2.5.7-5.fc44 fedora 215.8 KiB libattr aarch64 0:2.5.2-9.fc45 fedora 68.4 KiB libblkid aarch64 0:2.42.2-1.fc45 fedora 290.3 KiB libbrotli aarch64 0:1.2.0-4.fc45 fedora 909.2 KiB libcap aarch64 0:2.78-1.fc45 fedora 508.4 KiB libcap-ng aarch64 0:0.9.3-2.fc45 fedora 160.9 KiB libcbor aarch64 0:0.14.0-2.fc45 fedora 139.6 KiB libcom_err aarch64 0:1.47.4-1.fc45 fedora 111.1 KiB libcurl aarch64 0:8.21.0~rc2-1.fc45 fedora 981.5 KiB libeconf aarch64 0:0.7.9-3.fc44 fedora 80.8 KiB libevent aarch64 0:2.1.12-17.fc44 fedora 1.1 MiB libfdisk aarch64 0:2.42.2-1.fc45 fedora 418.7 KiB libffi aarch64 0:3.5.2-2.fc44 fedora 155.7 KiB libfido2 aarch64 0:1.17.0-2.fc45 fedora 280.7 KiB libfsverity aarch64 0:1.7-1.fc45 fedora 68.3 KiB libgcc aarch64 0:16.1.1-2.fc45 fedora 222.3 KiB libgcrypt aarch64 0:1.12.2-1.fc45 fedora 1.2 MiB libgomp aarch64 0:16.1.1-2.fc45 fedora 592.8 KiB libgpg-error aarch64 0:1.61-1.fc45 fedora 997.9 KiB libidn2 aarch64 0:2.3.8-3.fc44 fedora 560.4 KiB libksba aarch64 0:1.8.0-1.fc45 fedora 407.0 KiB liblastlog2 aarch64 0:2.42.2-1.fc45 fedora 137.8 KiB libmount aarch64 0:2.42.2-1.fc45 fedora 420.3 KiB libnghttp2 aarch64 0:1.69.0-1.fc45 fedora 197.9 KiB libnghttp3 aarch64 0:1.16.0-1.fc45 fedora 206.6 KiB libpkgconf aarch64 0:2.5.1-1.fc45 fedora 133.9 KiB libpsl aarch64 0:0.21.5-7.fc44 fedora 132.3 KiB libselinux aarch64 0:3.10-2.fc45 fedora 201.1 KiB libselinux-utils aarch64 0:3.10-2.fc45 fedora 1.3 MiB libsemanage aarch64 0:3.10-2.fc45 fedora 360.1 KiB libsepol aarch64 0:3.10-1.fc44 fedora 810.0 KiB libsmartcols aarch64 0:2.42.2-1.fc45 fedora 224.4 KiB libssh aarch64 0:0.12.0-1.fc45 fedora 718.9 KiB libssh-config noarch 0:0.12.0-1.fc45 fedora 277.0 B libstdc++ aarch64 0:16.1.1-2.fc45 fedora 3.0 MiB libtasn1 aarch64 0:4.21.0-1.fc45 fedora 220.7 KiB libtool-ltdl aarch64 0:2.5.4-10.fc44 fedora 93.9 KiB libunistring aarch64 0:1.1-11.fc44 fedora 1.7 MiB libusb1 aarch64 0:1.0.30-1.fc45 fedora 179.7 KiB libuuid aarch64 0:2.42.2-1.fc45 fedora 69.3 KiB libverto aarch64 0:0.3.2-12.fc44 fedora 69.3 KiB libxcrypt aarch64 0:4.5.2-3.fc44 fedora 273.2 KiB libxml2 aarch64 0:2.13.9-2.fc45 fedora 1.8 MiB libzstd aarch64 0:1.5.7-5.fc44 fedora 860.2 KiB linkdupes aarch64 0:0.7.3-2.fc45 fedora 713.7 KiB lua-libs aarch64 0:5.5.0-1.fc45 fedora 329.9 KiB lua-srpm-macros noarch 0:1-17.fc44 fedora 1.3 KiB lz4-libs aarch64 0:1.10.0-4.fc44 fedora 197.3 KiB mpfr aarch64 0:4.2.2-3.fc44 fedora 755.4 KiB ncurses-base noarch 0:6.6-2.fc45 fedora 329.7 KiB ncurses-libs aarch64 0:6.6-2.fc45 fedora 1.2 MiB nettle aarch64 0:3.10.1-3.fc44 fedora 765.0 KiB ngtcp2 aarch64 0:1.22.1-1.fc45 fedora 341.1 KiB ngtcp2-crypto-ossl aarch64 0:1.22.1-1.fc45 fedora 67.5 KiB npth aarch64 0:1.8-4.fc44 fedora 93.3 KiB ocaml-srpm-macros noarch 0:11-3.fc44 fedora 1.9 KiB openblas-srpm-macros noarch 0:2-21.fc44 fedora 112.0 B openldap aarch64 0:2.6.13-1.fc45 fedora 764.2 KiB openssl-libs aarch64 1:3.5.7-1.fc45 fedora 7.4 MiB p11-kit aarch64 0:0.26.2-1.fc45 fedora 2.7 MiB p11-kit-trust aarch64 0:0.26.2-1.fc45 fedora 530.1 KiB package-notes-srpm-macros noarch 0:0.19-1.fc45 fedora 1.6 KiB pam-libs aarch64 0:1.7.2-1.fc44 fedora 222.6 KiB pcre2 aarch64 0:10.47-1.fc44.1 fedora 714.3 KiB pcre2-syntax noarch 0:10.47-1.fc44.1 fedora 281.9 KiB perl-srpm-macros noarch 0:1-61.fc44 fedora 861.0 B pkgconf aarch64 0:2.5.1-1.fc45 fedora 116.7 KiB pkgconf-m4 noarch 0:2.5.1-1.fc45 fedora 14.3 KiB pkgconf-pkg-config aarch64 0:2.5.1-1.fc45 fedora 990.0 B policycoreutils aarch64 0:3.10-5.fc45 fedora 1.5 MiB popt aarch64 0:1.19-10.fc44 fedora 144.6 KiB publicsuffix-list-dafsa noarch 0:20260116-1.fc44 fedora 70.4 KiB pyproject-srpm-macros noarch 0:1.22.2-1.fc45 fedora 3.2 KiB python-srpm-macros noarch 0:3.15-1.fc45 fedora 51.6 KiB qt5-srpm-macros noarch 0:5.15.18-2.fc44 fedora 500.0 B qt6-srpm-macros noarch 0:6.11.1-1.fc45 fedora 472.0 B readline aarch64 0:8.3-4.fc44 fedora 563.5 KiB redhat-systemd-presets noarch 0:102-2.fc45 fedora 1.0 KiB redhat-systemd-presets-common noarch 0:102-2.fc45 fedora 16.9 KiB rpm aarch64 0:6.0.1-6.fc45 fedora 3.3 MiB rpm-build-libs aarch64 0:6.0.1-6.fc45 fedora 264.1 KiB rpm-libs aarch64 0:6.0.1-6.fc45 fedora 995.2 KiB rpm-plugin-selinux aarch64 0:6.0.1-6.fc45 fedora 67.9 KiB rpm-sequoia aarch64 0:1.10.2-2.fc45 fedora 2.2 MiB rpm-sign-libs aarch64 0:6.0.1-6.fc45 fedora 67.7 KiB rust-srpm-macros noarch 0:28.4-3.fc44 fedora 5.5 KiB selinux-policy noarch 0:45.5-1.fc45 fedora 32.1 KiB selinux-policy-targeted noarch 0:45.5-1.fc45 fedora 18.9 MiB setup noarch 0:2.15.0-29.fc45 fedora 724.9 KiB sqlite-libs aarch64 0:3.53.2-1.fc45 fedora 1.6 MiB systemd-libs aarch64 0:261~rc3-3.fc45 fedora 2.8 MiB systemd-standalone-sysusers aarch64 0:261~rc3-3.fc45 fedora 914.6 KiB tpm2-tss aarch64 0:4.1.3-9.fc44 fedora 2.1 MiB tree-sitter-srpm-macros noarch 0:0.4.6-1.fc45 fedora 8.6 KiB util-linux-core aarch64 0:2.42.2-1.fc45 fedora 2.5 MiB xxhash-libs aarch64 0:0.8.3-4.fc44 fedora 85.8 KiB xz-libs aarch64 1:5.8.3-1.fc45 fedora 265.5 KiB zig-srpm-macros noarch 0:1-8.fc44 fedora 1.3 KiB zip aarch64 0:3.0-45.fc44 fedora 762.0 KiB zlib-ng-compat aarch64 0:2.3.3-5.fc45 fedora 133.3 KiB zstd aarch64 0:1.5.7-5.fc44 fedora 562.2 KiB Installing groups: Buildsystem building group Transaction Summary: Installing: 187 packages Total size of inbound packages is 68 MiB. Need to download 68 MiB. After this operation, 253 MiB extra will be used (install 253 MiB, remove 0 B). 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79.0 KiB | 00m00s [155/187] libidn2-0:2.3.8-3.fc44.aarch6 100% | 4.6 MiB/s | 174.6 KiB | 00m00s [156/187] libunistring-0:1.1-11.fc44.aa 100% | 14.6 MiB/s | 538.3 KiB | 00m00s [157/187] nettle-0:3.10.1-3.fc44.aarch6 100% | 10.4 MiB/s | 425.5 KiB | 00m00s [158/187] cyrus-sasl-lib-0:2.1.28-35.fc 100% | 17.2 MiB/s | 772.9 KiB | 00m00s [159/187] libevent-0:2.1.12-17.fc44.aar 100% | 9.4 MiB/s | 270.5 KiB | 00m00s [160/187] libtool-ltdl-0:2.5.4-10.fc44. 100% | 1.2 MiB/s | 35.6 KiB | 00m00s [161/187] gdbm-libs-1:1.23-11.fc44.aarc 100% | 1.6 MiB/s | 56.3 KiB | 00m00s [162/187] fedora-release-0:45-0.8.noarc 100% | 361.6 KiB/s | 12.7 KiB | 00m00s [163/187] systemd-standalone-sysusers-0 100% | 10.9 MiB/s | 377.8 KiB | 00m00s [164/187] xxhash-libs-0:0.8.3-4.fc44.aa 100% | 1.1 MiB/s | 34.5 KiB | 00m00s [165/187] fedora-release-identity-basic 100% | 419.5 KiB/s | 13.4 KiB | 00m00s [166/187] gdb-minimal-0:17.1-10.fc45.aa 100% | 54.9 MiB/s | 4.3 MiB | 00m00s [167/187] libcurl-0:8.21.0~rc2-1.fc45.a 100% | 9.9 MiB/s | 444.1 KiB | 00m00s [168/187] krb5-libs-0:1.22.2-7.fc45.aar 100% | 14.9 MiB/s | 762.1 KiB | 00m00s [169/187] libnghttp2-0:1.69.0-1.fc45.aa 100% | 2.4 MiB/s | 74.4 KiB | 00m00s [170/187] libbrotli-0:1.2.0-4.fc45.aarc 100% | 8.7 MiB/s | 348.8 KiB | 00m00s [171/187] libnghttp3-0:1.16.0-1.fc45.aa 100% | 2.0 MiB/s | 69.1 KiB | 00m00s [172/187] libpsl-0:0.21.5-7.fc44.aarch6 100% | 2.0 MiB/s | 64.9 KiB | 00m00s [173/187] libssh-0:0.12.0-1.fc45.aarch6 100% | 7.9 MiB/s | 274.8 KiB | 00m00s [174/187] ngtcp2-0:1.22.1-1.fc45.aarch6 100% | 5.3 MiB/s | 147.2 KiB | 00m00s [175/187] ngtcp2-crypto-ossl-0:1.22.1-1 100% | 812.0 KiB/s | 26.0 KiB | 00m00s [176/187] keyutils-libs-0:1.6.3-7.fc44. 100% | 828.3 KiB/s | 31.5 KiB | 00m00s [177/187] libcom_err-0:1.47.4-1.fc45.aa 100% | 784.3 KiB/s | 26.7 KiB | 00m00s [178/187] libverto-0:0.3.2-12.fc44.aarc 100% | 570.0 KiB/s | 20.5 KiB | 00m00s [179/187] publicsuffix-list-dafsa-0:202 100% | 1.6 MiB/s | 60.3 KiB | 00m00s [180/187] libfido2-0:1.17.0-2.fc45.aarc 100% | 2.7 MiB/s | 98.9 KiB | 00m00s [181/187] libssh-config-0:0.12.0-1.fc45 100% | 314.0 KiB/s | 9.4 KiB | 00m00s [182/187] libcbor-0:0.14.0-2.fc45.aarch 100% | 1.0 MiB/s | 35.0 KiB | 00m00s [183/187] policycoreutils-0:3.10-5.fc45 100% | 7.5 MiB/s | 262.0 KiB | 00m00s [184/187] selinux-policy-0:45.5-1.fc45. 100% | 2.3 MiB/s | 74.5 KiB | 00m00s [185/187] libselinux-utils-0:3.10-2.fc4 100% | 5.4 MiB/s | 126.5 KiB | 00m00s [186/187] selinux-policy-targeted-0:45. 100% | 72.1 MiB/s | 6.8 MiB | 00m00s [187/187] rpm-plugin-selinux-0:6.0.1-6. 100% | 530.7 KiB/s | 18.6 KiB | 00m00s -------------------------------------------------------------------------------- [187/187] Total 100% | 27.2 MiB/s | 67.9 MiB | 00m02s Running transaction Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x91211FCE: UserID : "Fedora (46) " Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary The key was successfully imported. [ 1/189] Verify package files 100% | 727.0 B/s | 187.0 B | 00m00s [ 2/189] Prepare transaction 100% | 2.2 KiB/s | 187.0 B | 00m00s [ 3/189] Installing libgcc-0:16.1.1-2. 100% | 109.4 MiB/s | 224.0 KiB | 00m00s [ 4/189] Installing redhat-systemd-pre 100% | 0.0 B/s | 1.5 KiB | 00m00s [ 5/189] Installing redhat-systemd-pre 100% | 17.7 MiB/s | 18.1 KiB | 00m00s [ 6/189] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 7/189] Installing publicsuffix-list- 100% | 69.4 MiB/s | 71.1 KiB | 00m00s [ 8/189] Installing fedora-release-ide 100% | 898.4 KiB/s | 920.0 B | 00m00s [ 9/189] Installing fedora-gpg-keys-0: 100% | 29.6 MiB/s | 182.1 KiB | 00m00s [ 10/189] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 11/189] Installing fedora-repos-0:45- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 12/189] Installing fedora-release-com 100% | 7.3 MiB/s | 7.4 KiB | 00m00s [ 13/189] Installing fedora-release-0:4 100% | 20.2 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-29.fc45.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-29.fc45.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 14/189] Installing setup-0:2.15.0-29. 100% | 28.5 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 15/189] Installing filesystem-0:3.18- 100% | 1.6 MiB/s | 253.6 KiB | 00m00s [ 16/189] Installing pkgconf-m4-0:2.5.1 100% | 14.4 MiB/s | 14.7 KiB | 00m00s [ 17/189] Installing pcre2-syntax-0:10. 100% | 138.8 MiB/s | 284.3 KiB | 00m00s [ 18/189] Installing gnulib-l10n-0:2024 100% | 107.7 MiB/s | 661.9 KiB | 00m00s [ 19/189] Installing coreutils-common-0 100% | 296.1 MiB/s | 11.0 MiB | 00m00s [ 20/189] Installing ncurses-base-0:6.6 100% | 43.4 MiB/s | 355.3 KiB | 00m00s [ 21/189] Installing bash-0:5.3.9-3.fc4 100% | 162.2 MiB/s | 8.4 MiB | 00m00s [ 22/189] Installing glibc-common-0:2.4 100% | 39.0 MiB/s | 1.3 MiB | 00m00s [ 23/189] Installing glibc-gconv-extra- 100% | 373.7 MiB/s | 18.7 MiB | 00m00s [ 24/189] Installing glibc-0:2.43.9000- 100% | 120.4 MiB/s | 6.5 MiB | 00m00s [ 25/189] Installing ncurses-libs-0:6.6 100% | 207.6 MiB/s | 1.2 MiB | 00m00s [ 26/189] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 27/189] Installing zlib-ng-compat-0:2 100% | 131.0 MiB/s | 134.1 KiB | 00m00s [ 28/189] Installing bzip2-libs-0:1.0.8 100% | 71.9 MiB/s | 73.6 KiB | 00m00s [ 29/189] Installing libgpg-error-0:1.6 100% | 31.6 MiB/s | 1.0 MiB | 00m00s [ 30/189] Installing libstdc++-0:16.1.1 100% | 297.1 MiB/s | 3.0 MiB | 00m00s [ 31/189] Installing libassuan-0:2.5.7- 100% | 106.3 MiB/s | 217.7 KiB | 00m00s [ 32/189] Installing libgcrypt-0:1.12.2 100% | 240.0 MiB/s | 1.2 MiB | 00m00s [ 33/189] Installing readline-0:8.3-4.f 100% | 184.1 MiB/s | 565.6 KiB | 00m00s [ 34/189] Installing gmp-1:6.3.0-5.fc44 100% | 214.9 MiB/s | 660.1 KiB | 00m00s [ 35/189] Installing systemd-libs-0:261 100% | 308.9 MiB/s | 2.8 MiB | 00m00s [ 36/189] Installing libuuid-0:2.42.2-1 100% | 68.8 MiB/s | 70.4 KiB | 00m00s [ 37/189] Installing xz-libs-1:5.8.3-1. 100% | 260.3 MiB/s | 266.6 KiB | 00m00s [ 38/189] Installing libzstd-0:1.5.7-5. 100% | 280.4 MiB/s | 861.5 KiB | 00m00s [ 39/189] Installing elfutils-libelf-0: 100% | 294.4 MiB/s | 1.2 MiB | 00m00s [ 40/189] Installing popt-0:1.19-10.fc4 100% | 36.9 MiB/s | 151.3 KiB | 00m00s [ 41/189] Installing npth-0:1.8-4.fc44. 100% | 92.2 MiB/s | 94.4 KiB | 00m00s [ 42/189] Installing elfutils-libs-0:0. 100% | 243.6 MiB/s | 748.4 KiB | 00m00s [ 43/189] Installing libblkid-0:2.42.2- 100% | 142.2 MiB/s | 291.3 KiB | 00m00s [ 44/189] Installing libattr-0:2.5.2-9. 100% | 67.7 MiB/s | 69.3 KiB | 00m00s [ 45/189] Installing libacl-0:2.3.2-7.f 100% | 67.1 MiB/s | 68.7 KiB | 00m00s [ 46/189] Installing libsepol-0:3.10-1. 100% | 264.0 MiB/s | 810.9 KiB | 00m00s [ 47/189] Installing sqlite-libs-0:3.53 100% | 261.4 MiB/s | 1.6 MiB | 00m00s [ 48/189] Installing gnupg2-gpgconf-0:2 100% | 11.3 MiB/s | 323.9 KiB | 00m00s [ 49/189] Installing pcre2-0:10.47-1.fc 100% | 233.0 MiB/s | 715.7 KiB | 00m00s [ 50/189] Installing libselinux-0:3.10- 100% | 98.8 MiB/s | 202.3 KiB | 00m00s [ 51/189] Installing grep-0:3.12-3.fc44 100% | 31.4 MiB/s | 1.0 MiB | 00m00s [ 52/189] Installing sed-0:4.10-1.fc45. 100% | 28.2 MiB/s | 951.9 KiB | 00m00s [ 53/189] Installing findutils-1:4.10.0 100% | 54.8 MiB/s | 1.9 MiB | 00m00s [ 54/189] Installing libxcrypt-0:4.5.2- 100% | 134.7 MiB/s | 275.9 KiB | 00m00s [ 55/189] Installing libtasn1-0:4.21.0- 100% | 108.7 MiB/s | 222.5 KiB | 00m00s [ 56/189] Installing libunistring-0:1.1 100% | 291.0 MiB/s | 1.7 MiB | 00m00s [ 57/189] Installing libidn2-0:2.3.8-3. 100% | 61.5 MiB/s | 566.6 KiB | 00m00s [ 58/189] Installing crypto-policies-0: 100% | 19.3 MiB/s | 158.3 KiB | 00m00s [ 59/189] Installing xz-1:5.8.3-1.fc45. 100% | 41.2 MiB/s | 1.5 MiB | 00m00s [ 60/189] Installing libmount-0:2.42.2- 100% | 205.7 MiB/s | 421.3 KiB | 00m00s [ 61/189] Installing gnupg2-verify-0:2. 100% | 12.7 MiB/s | 365.6 KiB | 00m00s [ 62/189] Installing dwz-0:0.16-3.fc44. 100% | 11.3 MiB/s | 323.8 KiB | 00m00s [ 63/189] Installing mpfr-0:4.2.2-3.fc4 100% | 184.8 MiB/s | 757.1 KiB | 00m00s [ 64/189] Installing gawk-0:5.4.0-3.fc4 100% | 78.7 MiB/s | 2.9 MiB | 00m00s [ 65/189] Installing libksba-0:1.8.0-1. 100% | 133.3 MiB/s | 409.6 KiB | 00m00s [ 66/189] Installing unzip-0:6.0-69.fc4 100% | 16.9 MiB/s | 537.3 KiB | 00m00s [ 67/189] Installing file-libs-0:5.47-3 100% | 554.8 MiB/s | 12.2 MiB | 00m00s [ 68/189] Installing file-0:5.47-3.fc45 100% | 5.0 MiB/s | 142.7 KiB | 00m00s [ 69/189] Installing diffutils-0:3.12-5 100% | 47.7 MiB/s | 1.6 MiB | 00m00s [ 70/189] Installing libeconf-0:0.7.9-3 100% | 80.5 MiB/s | 82.5 KiB | 00m00s [ 71/189] Installing libcap-ng-0:0.9.3- 100% | 159.0 MiB/s | 162.8 KiB | 00m00s [ 72/189] Installing audit-libs-0:4.1.4 100% | 159.3 MiB/s | 489.2 KiB | 00m00s [ 73/189] Installing pam-libs-0:1.7.2-1 100% | 109.8 MiB/s | 225.0 KiB | 00m00s [ 74/189] Installing libcap-0:2.78-1.fc 100% | 16.7 MiB/s | 513.5 KiB | 00m00s [ 75/189] Installing libsemanage-0:3.10 100% | 176.7 MiB/s | 361.8 KiB | 00m00s [ 76/189] Installing libsmartcols-0:2.4 100% | 220.3 MiB/s | 225.6 KiB | 00m00s [ 77/189] Installing alternatives-0:1.3 100% | 3.3 MiB/s | 91.6 KiB | 00m00s [ 78/189] Installing lua-libs-0:5.5.0-1 100% | 161.8 MiB/s | 331.4 KiB | 00m00s [ 79/189] Installing libffi-0:3.5.2-2.f 100% | 153.4 MiB/s | 157.1 KiB | 00m00s [ 80/189] Installing p11-kit-0:0.26.2-1 100% | 67.4 MiB/s | 2.8 MiB | 00m00s [ 81/189] Installing p11-kit-trust-0:0. 100% | 15.3 MiB/s | 531.8 KiB | 00m00s [ 82/189] Installing json-c-0:0.18-8.fc 100% | 136.5 MiB/s | 139.7 KiB | 00m00s [ 83/189] Installing ngtcp2-0:1.22.1-1. 100% | 167.3 MiB/s | 342.7 KiB | 00m00s [ 84/189] Installing openssl-libs-1:3.5 100% | 309.2 MiB/s | 7.4 MiB | 00m00s [ 85/189] Installing coreutils-0:9.11-3 100% | 144.3 MiB/s | 8.2 MiB | 00m00s [ 86/189] Installing ca-certificates-0: 100% | 1.4 MiB/s | 2.5 MiB | 00m02s [ 87/189] Installing gzip-0:1.14-2.fc44 100% | 14.0 MiB/s | 443.0 KiB | 00m00s [ 88/189] Installing rpm-sequoia-0:1.10 100% | 278.4 MiB/s | 2.2 MiB | 00m00s [ 89/189] Installing libfsverity-0:1.7- 100% | 67.6 MiB/s | 69.3 KiB | 00m00s [ 90/189] Installing libevent-0:2.1.12- 100% | 271.2 MiB/s | 1.1 MiB | 00m00s [ 91/189] Installing ngtcp2-crypto-ossl 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 92/189] Installing util-linux-core-0: 100% | 66.7 MiB/s | 2.5 MiB | 00m00s [ 93/189] Installing liblastlog2-0:2.42 100% | 27.3 MiB/s | 139.8 KiB | 00m00s [ 94/189] Installing zip-0:3.0-45.fc44. 100% | 24.1 MiB/s | 765.8 KiB | 00m00s [ 95/189] Installing gnupg2-keyboxd-0:2 100% | 38.2 MiB/s | 234.5 KiB | 00m00s [ 96/189] Installing libpsl-0:0.21.5-7. 100% | 130.3 MiB/s | 133.4 KiB | 00m00s [ 97/189] Installing tar-2:1.35-8.fc44. 100% | 77.0 MiB/s | 3.0 MiB | 00m00s [ 98/189] Installing linkdupes-0:0.7.3- 100% | 22.5 MiB/s | 715.1 KiB | 00m00s [ 99/189] Installing libselinux-utils-0 100% | 42.4 MiB/s | 1.4 MiB | 00m00s [100/189] Installing libfdisk-0:2.42.2- 100% | 102.5 MiB/s | 419.9 KiB | 00m00s [101/189] Installing util-linux-0:2.42. 100% | 113.1 MiB/s | 7.0 MiB | 00m00s [102/189] Installing policycoreutils-0: 100% | 33.2 MiB/s | 1.5 MiB | 00m00s [103/189] Installing selinux-policy-0:4 100% | 1.7 MiB/s | 34.5 KiB | 00m00s [104/189] Installing selinux-policy-tar 100% | 121.7 MiB/s | 15.1 MiB | 00m00s [105/189] Installing zstd-0:1.5.7-5.fc4 100% | 18.4 MiB/s | 565.8 KiB | 00m00s [106/189] Installing libxml2-0:2.13.9-2 100% | 54.2 MiB/s | 1.8 MiB | 00m00s [107/189] Installing libusb1-0:1.0.30-1 100% | 22.1 MiB/s | 181.4 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.aarch64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.aarch64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [108/189] Installing tpm2-tss-0:4.1.3-9 100% | 239.7 MiB/s | 2.2 MiB | 00m00s [109/189] Installing ima-evm-utils-libs 100% | 91.7 MiB/s | 93.9 KiB | 00m00s [110/189] Installing gnupg2-gpg-agent-0 100% | 22.5 MiB/s | 850.9 KiB | 00m00s [111/189] Installing nettle-0:3.10.1-3. 100% | 187.5 MiB/s | 768.2 KiB | 00m00s [112/189] Installing gnutls-0:3.8.13-1. 100% | 309.1 MiB/s | 3.7 MiB | 00m00s [113/189] Installing bzip2-0:1.0.8-23.f 100% | 5.9 MiB/s | 175.6 KiB | 00m00s [114/189] Installing add-determinism-0: 100% | 58.0 MiB/s | 2.0 MiB | 00m00s [115/189] Installing build-reproducibil 100% | 1.5 MiB/s | 1.5 KiB | 00m00s [116/189] Installing cpio-0:2.15-9.fc44 100% | 34.2 MiB/s | 1.1 MiB | 00m00s [117/189] Installing ed-0:1.22.5-2.fc45 100% | 5.6 MiB/s | 159.9 KiB | 00m00s [118/189] Installing patch-0:2.8-4.fc44 100% | 9.2 MiB/s | 263.9 KiB | 00m00s [119/189] Installing jansson-0:2.14-4.f 100% | 92.2 MiB/s | 94.4 KiB | 00m00s [120/189] Installing lz4-libs-0:1.10.0- 100% | 193.7 MiB/s | 198.4 KiB | 00m00s [121/189] Installing libarchive-0:3.8.7 100% | 238.7 MiB/s | 977.5 KiB | 00m00s [122/189] Installing libgomp-0:16.1.1-2 100% | 290.1 MiB/s | 594.1 KiB | 00m00s [123/189] Installing libpkgconf-0:2.5.1 100% | 131.9 MiB/s | 135.1 KiB | 00m00s [124/189] Installing pkgconf-0:2.5.1-1. 100% | 4.2 MiB/s | 119.2 KiB | 00m00s [125/189] Installing pkgconf-pkg-config 100% | 65.7 KiB/s | 1.8 KiB | 00m00s [126/189] Installing libtool-ltdl-0:2.5 100% | 92.8 MiB/s | 95.0 KiB | 00m00s [127/189] Installing gdbm-libs-1:1.23-1 100% | 114.9 MiB/s | 235.4 KiB | 00m00s [128/189] Installing cyrus-sasl-lib-0:2 100% | 69.0 MiB/s | 2.4 MiB | 00m00s [129/189] Installing openldap-0:2.6.13- 100% | 187.5 MiB/s | 768.0 KiB | 00m00s [130/189] Installing gnupg2-dirmngr-0:2 100% | 18.1 MiB/s | 648.9 KiB | 00m00s [131/189] Installing gnupg2-0:2.4.9-16. 100% | 126.6 MiB/s | 6.5 MiB | 00m00s [132/189] Installing gpgverify-0:2.2-4. 100% | 9.2 MiB/s | 9.4 KiB | 00m00s [133/189] Installing systemd-standalone 100% | 28.8 MiB/s | 915.1 KiB | 00m00s [134/189] Installing rpm-libs-0:6.0.1-6 100% | 194.7 MiB/s | 996.7 KiB | 00m00s [135/189] Installing rpm-sign-libs-0:6. 100% | 66.9 MiB/s | 68.5 KiB | 00m00s [136/189] Installing rpm-build-libs-0:6 100% | 129.4 MiB/s | 264.9 KiB | 00m00s [137/189] Installing xxhash-libs-0:0.8. 100% | 85.1 MiB/s | 87.2 KiB | 00m00s [138/189] Installing libbrotli-0:1.2.0- 100% | 222.5 MiB/s | 911.5 KiB | 00m00s [139/189] Installing libnghttp2-0:1.69. 100% | 194.4 MiB/s | 199.0 KiB | 00m00s [140/189] Installing libnghttp3-0:1.16. 100% | 203.2 MiB/s | 208.1 KiB | 00m00s [141/189] Installing keyutils-libs-0:1. 100% | 97.3 MiB/s | 99.6 KiB | 00m00s [142/189] Installing libcom_err-0:1.47. 100% | 109.6 MiB/s | 112.2 KiB | 00m00s [143/189] Installing libverto-0:0.3.2-1 100% | 69.4 MiB/s | 71.1 KiB | 00m00s [144/189] Installing krb5-libs-0:1.22.2 100% | 253.4 MiB/s | 2.5 MiB | 00m00s [145/189] Installing libcbor-0:0.14.0-2 100% | 137.7 MiB/s | 141.0 KiB | 00m00s [146/189] Installing libfido2-0:1.17.0- 100% | 137.8 MiB/s | 282.2 KiB | 00m00s [147/189] Installing libssh-0:0.12.0-1. 100% | 234.7 MiB/s | 721.0 KiB | 00m00s [148/189] Installing libcurl-0:8.21.0~r 100% | 239.9 MiB/s | 982.6 KiB | 00m00s [149/189] Installing elfutils-debuginfo 100% | 4.9 MiB/s | 146.2 KiB | 00m00s [150/189] Installing binutils-0:2.46.50 100% | 266.9 MiB/s | 31.5 MiB | 00m00s [151/189] Installing elfutils-0:0.195-1 100% | 92.0 MiB/s | 3.6 MiB | 00m00s [152/189] Installing gdb-minimal-0:17.1 100% | 199.0 MiB/s | 13.5 MiB | 00m00s [153/189] Installing debugedit-0:5.3-2. 100% | 10.6 MiB/s | 324.2 KiB | 00m00s [154/189] Installing curl-0:8.21.0~rc2- 100% | 14.0 MiB/s | 531.4 KiB | 00m00s [155/189] Installing rpm-0:6.0.1-6.fc45 100% | 49.9 MiB/s | 2.8 MiB | 00m00s [156/189] Installing cmake-srpm-macros- 100% | 785.2 KiB/s | 804.0 B | 00m00s [157/189] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [158/189] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [159/189] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [160/189] Installing tree-sitter-srpm-m 100% | 9.4 MiB/s | 9.6 KiB | 00m00s [161/189] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [162/189] Installing filesystem-srpm-ma 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [163/189] Installing rust-srpm-macros-0 100% | 6.2 MiB/s | 6.4 KiB | 00m00s [164/189] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 748.0 B | 00m00s [165/189] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [166/189] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [167/189] Installing package-notes-srpm 100% | 0.0 B/s | 2.1 KiB | 00m00s [168/189] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [169/189] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [170/189] Installing kernel-srpm-macros 100% | 388.0 KiB/s | 2.3 KiB | 00m00s [171/189] Installing gnome-srpm-macros- 100% | 0.0 B/s | 4.1 KiB | 00m00s [172/189] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [173/189] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [174/189] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [175/189] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [176/189] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [177/189] Installing redhat-rpm-config- 100% | 61.8 MiB/s | 189.9 KiB | 00m00s [178/189] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [179/189] Installing rpm-build-0:6.0.1- 100% | 18.5 MiB/s | 607.8 KiB | 00m00s [180/189] Installing erlang-srpm-macros 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [181/189] Installing pyproject-srpm-mac 100% | 3.7 MiB/s | 3.8 KiB | 00m00s [182/189] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [183/189] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [184/189] Installing R-srpm-macros-0:1. 100% | 4.3 MiB/s | 4.4 KiB | 00m00s [185/189] Installing python-srpm-macros 100% | 51.7 MiB/s | 52.9 KiB | 00m00s [186/189] Installing rpm-plugin-selinux 100% | 67.3 MiB/s | 68.9 KiB | 00m00s [187/189] Installing which-0:2.25-1.fc4 100% | 4.1 MiB/s | 125.8 KiB | 00m00s [188/189] Installing shadow-utils-2:4.1 100% | 81.8 MiB/s | 4.6 MiB | 00m00s [189/189] Installing info-0:7.3-2.fc45. 100% | 50.0 KiB/s | 424.8 KiB | 00m08s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: R-srpm-macros-1.3.7-2.fc45.noarch add-determinism-0.7.3-2.fc45.aarch64 alternatives-1.33-5.fc44.aarch64 ansible-srpm-macros-1-20.1.fc44.noarch audit-libs-4.1.4-2.fc45.aarch64 bash-5.3.9-3.fc44.aarch64 binutils-2.46.50-10.fc45.aarch64 build-reproducibility-srpm-macros-0.7.3-2.fc45.noarch bzip2-1.0.8-23.fc44.aarch64 bzip2-libs-1.0.8-23.fc44.aarch64 ca-certificates-2025.2.80_v9.0.304-7.fc45.noarch cmake-srpm-macros-4.3.0-3.fc45.noarch coreutils-9.11-3.fc45.aarch64 coreutils-common-9.11-3.fc45.aarch64 cpio-2.15-9.fc44.aarch64 crypto-policies-20260331-1.git4c567b2.fc45.noarch curl-8.21.0~rc2-1.fc45.aarch64 cyrus-sasl-lib-2.1.28-35.fc44.aarch64 debugedit-5.3-2.fc45.aarch64 diffutils-3.12-5.fc44.aarch64 dwz-0.16-3.fc44.aarch64 ed-1.22.5-2.fc45.aarch64 efi-srpm-macros-6-6.fc44.noarch elfutils-0.195-1.fc45.aarch64 elfutils-debuginfod-client-0.195-1.fc45.aarch64 elfutils-libelf-0.195-1.fc45.aarch64 elfutils-libs-0.195-1.fc45.aarch64 erlang-srpm-macros-0.3.11-1.fc45.noarch fedora-gpg-keys-45-0.1.noarch fedora-release-45-0.8.noarch fedora-release-common-45-0.8.noarch fedora-release-identity-basic-45-0.8.noarch fedora-repos-45-0.1.noarch fedora-repos-rawhide-45-0.1.noarch file-5.47-3.fc45.aarch64 file-libs-5.47-3.fc45.aarch64 filesystem-3.18-58.fc45.aarch64 filesystem-srpm-macros-3.18-58.fc45.noarch findutils-4.10.0-7.fc44.aarch64 fonts-srpm-macros-5.0.0-3.fc45.noarch forge-srpm-macros-0.4.0-4.fc44.noarch fpc-srpm-macros-1.3-16.fc44.noarch gap-srpm-macros-2-2.fc44.noarch gawk-5.4.0-3.fc45.aarch64 gdb-minimal-17.1-10.fc45.aarch64 gdbm-libs-1.23-11.fc44.aarch64 ghc-srpm-macros-1.10-1.fc44.noarch glibc-2.43.9000-20.fc45.aarch64 glibc-common-2.43.9000-20.fc45.aarch64 glibc-gconv-extra-2.43.9000-20.fc45.aarch64 glibc-minimal-langpack-2.43.9000-20.fc45.aarch64 gmp-6.3.0-5.fc44.aarch64 gnat-srpm-macros-7-2.fc44.noarch gnome-srpm-macros-1.0-1.fc45.noarch gnulib-l10n-20241231-3.fc45.noarch gnupg2-2.4.9-16.fc45.aarch64 gnupg2-dirmngr-2.4.9-16.fc45.aarch64 gnupg2-gpg-agent-2.4.9-16.fc45.aarch64 gnupg2-gpgconf-2.4.9-16.fc45.aarch64 gnupg2-keyboxd-2.4.9-16.fc45.aarch64 gnupg2-verify-2.4.9-16.fc45.aarch64 gnutls-3.8.13-1.fc45.aarch64 go-srpm-macros-3.8.0-2.fc44.noarch gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98 gpg-pubkey-d924b10d3e810dabdd8b56b596e7e91491211fce-697c9899 gpgverify-2.2-4.fc44.noarch grep-3.12-3.fc44.aarch64 gzip-1.14-2.fc44.aarch64 ima-evm-utils-libs-1.6.2-10.fc45.aarch64 info-7.3-2.fc45.aarch64 jansson-2.14-4.fc44.aarch64 java-srpm-macros-1-8.fc44.noarch json-c-0.18-8.fc44.aarch64 kernel-srpm-macros-1.0-29.fc45.noarch keyutils-libs-1.6.3-7.fc44.aarch64 krb5-libs-1.22.2-7.fc45.aarch64 libacl-2.3.2-7.fc45.aarch64 libarchive-3.8.7-1.fc45.aarch64 libassuan-2.5.7-5.fc44.aarch64 libattr-2.5.2-9.fc45.aarch64 libblkid-2.42.2-1.fc45.aarch64 libbrotli-1.2.0-4.fc45.aarch64 libcap-2.78-1.fc45.aarch64 libcap-ng-0.9.3-2.fc45.aarch64 libcbor-0.14.0-2.fc45.aarch64 libcom_err-1.47.4-1.fc45.aarch64 libcurl-8.21.0~rc2-1.fc45.aarch64 libeconf-0.7.9-3.fc44.aarch64 libevent-2.1.12-17.fc44.aarch64 libfdisk-2.42.2-1.fc45.aarch64 libffi-3.5.2-2.fc44.aarch64 libfido2-1.17.0-2.fc45.aarch64 libfsverity-1.7-1.fc45.aarch64 libgcc-16.1.1-2.fc45.aarch64 libgcrypt-1.12.2-1.fc45.aarch64 libgomp-16.1.1-2.fc45.aarch64 libgpg-error-1.61-1.fc45.aarch64 libidn2-2.3.8-3.fc44.aarch64 libksba-1.8.0-1.fc45.aarch64 liblastlog2-2.42.2-1.fc45.aarch64 libmount-2.42.2-1.fc45.aarch64 libnghttp2-1.69.0-1.fc45.aarch64 libnghttp3-1.16.0-1.fc45.aarch64 libpkgconf-2.5.1-1.fc45.aarch64 libpsl-0.21.5-7.fc44.aarch64 libselinux-3.10-2.fc45.aarch64 libselinux-utils-3.10-2.fc45.aarch64 libsemanage-3.10-2.fc45.aarch64 libsepol-3.10-1.fc44.aarch64 libsmartcols-2.42.2-1.fc45.aarch64 libssh-0.12.0-1.fc45.aarch64 libssh-config-0.12.0-1.fc45.noarch libstdc++-16.1.1-2.fc45.aarch64 libtasn1-4.21.0-1.fc45.aarch64 libtool-ltdl-2.5.4-10.fc44.aarch64 libunistring-1.1-11.fc44.aarch64 libusb1-1.0.30-1.fc45.aarch64 libuuid-2.42.2-1.fc45.aarch64 libverto-0.3.2-12.fc44.aarch64 libxcrypt-4.5.2-3.fc44.aarch64 libxml2-2.13.9-2.fc45.aarch64 libzstd-1.5.7-5.fc44.aarch64 linkdupes-0.7.3-2.fc45.aarch64 lua-libs-5.5.0-1.fc45.aarch64 lua-srpm-macros-1-17.fc44.noarch lz4-libs-1.10.0-4.fc44.aarch64 mpfr-4.2.2-3.fc44.aarch64 ncurses-base-6.6-2.fc45.noarch ncurses-libs-6.6-2.fc45.aarch64 nettle-3.10.1-3.fc44.aarch64 ngtcp2-1.22.1-1.fc45.aarch64 ngtcp2-crypto-ossl-1.22.1-1.fc45.aarch64 npth-1.8-4.fc44.aarch64 ocaml-srpm-macros-11-3.fc44.noarch openblas-srpm-macros-2-21.fc44.noarch openldap-2.6.13-1.fc45.aarch64 openssl-libs-3.5.7-1.fc45.aarch64 p11-kit-0.26.2-1.fc45.aarch64 p11-kit-trust-0.26.2-1.fc45.aarch64 package-notes-srpm-macros-0.19-1.fc45.noarch pam-libs-1.7.2-1.fc44.aarch64 patch-2.8-4.fc44.aarch64 pcre2-10.47-1.fc44.1.aarch64 pcre2-syntax-10.47-1.fc44.1.noarch perl-srpm-macros-1-61.fc44.noarch pkgconf-2.5.1-1.fc45.aarch64 pkgconf-m4-2.5.1-1.fc45.noarch pkgconf-pkg-config-2.5.1-1.fc45.aarch64 policycoreutils-3.10-5.fc45.aarch64 popt-1.19-10.fc44.aarch64 publicsuffix-list-dafsa-20260116-1.fc44.noarch pyproject-srpm-macros-1.22.2-1.fc45.noarch python-srpm-macros-3.15-1.fc45.noarch qt5-srpm-macros-5.15.18-2.fc44.noarch qt6-srpm-macros-6.11.1-1.fc45.noarch readline-8.3-4.fc44.aarch64 redhat-rpm-config-344-2.fc45.noarch redhat-systemd-presets-102-2.fc45.noarch redhat-systemd-presets-common-102-2.fc45.noarch rpm-6.0.1-6.fc45.aarch64 rpm-build-6.0.1-6.fc45.aarch64 rpm-build-libs-6.0.1-6.fc45.aarch64 rpm-libs-6.0.1-6.fc45.aarch64 rpm-plugin-selinux-6.0.1-6.fc45.aarch64 rpm-sequoia-1.10.2-2.fc45.aarch64 rpm-sign-libs-6.0.1-6.fc45.aarch64 rust-srpm-macros-28.4-3.fc44.noarch sed-4.10-1.fc45.aarch64 selinux-policy-45.5-1.fc45.noarch selinux-policy-targeted-45.5-1.fc45.noarch setup-2.15.0-29.fc45.noarch shadow-utils-4.19.3-3.fc45.aarch64 sqlite-libs-3.53.2-1.fc45.aarch64 systemd-libs-261~rc3-3.fc45.aarch64 systemd-standalone-sysusers-261~rc3-3.fc45.aarch64 tar-1.35-8.fc44.aarch64 tpm2-tss-4.1.3-9.fc44.aarch64 tree-sitter-srpm-macros-0.4.6-1.fc45.noarch unzip-6.0-69.fc44.aarch64 util-linux-2.42.2-1.fc45.aarch64 util-linux-core-2.42.2-1.fc45.aarch64 which-2.25-1.fc45.aarch64 xxhash-libs-0.8.3-4.fc44.aarch64 xz-5.8.3-1.fc45.aarch64 xz-libs-5.8.3-1.fc45.aarch64 zig-srpm-macros-1-8.fc44.noarch zip-3.0-45.fc44.aarch64 zlib-ng-compat-2.3.3-5.fc45.aarch64 zstd-1.5.7-5.fc44.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 sh: line 1: perl: command not found setting SOURCE_DATE_EPOCH=1781740800 Wrote: /builddir/build/SRPMS/openbabel-3.2.0-1.fc45.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1781813679.476266/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-lfm4gtnc/openbabel/openbabel.spec) Config(child) 0 minutes 33 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/openbabel-3.2.0-1.fc45.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1781813679.476266/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1781813679.476266/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1781813679.476266/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-6.fc45.aarch64 rpm-sequoia-1.10.2-2.fc45.aarch64 dnf5-5.4.2.1-3.fc45.aarch64 dnf5-plugins-5.4.2.1-3.fc45.aarch64 Finish: chroot init Start: build phase for openbabel-3.2.0-1.fc45.src.rpm Start: build setup for openbabel-3.2.0-1.fc45.src.rpm Building target platforms: aarch64 Building for target aarch64 sh: line 1: perl: command not found setting SOURCE_DATE_EPOCH=1781740800 Wrote: /builddir/build/SRPMS/openbabel-3.2.0-1.fc45.src.rpm Updating and loading repositories: fedora 100% | 37.9 KiB/s | 11.9 KiB | 00m00s Copr repository 100% | 5.5 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: ImageMagick aarch64 1:7.1.2.13-4.fc45 fedora 140.1 KiB boost-devel aarch64 0:1.90.0-10.fc45 fedora 142.7 MiB cmake aarch64 0:4.3.0-3.fc45 fedora 32.8 MiB desktop-file-utils aarch64 0:0.28-7.fc45 fedora 318.3 KiB dos2unix aarch64 0:7.5.5-1.fc45 fedora 867.3 KiB eigen3-devel noarch 0:5.0.1-3.fc44 fedora 9.5 MiB gcc-c++ aarch64 0:16.1.1-2.fc45 fedora 44.8 MiB inchi-devel aarch64 0:1.0.6-14.fc44 fedora 97.0 KiB libxml2-devel aarch64 0:2.13.9-2.fc45 fedora 3.2 MiB make aarch64 1:4.4.1-12.fc44 fedora 1.8 MiB perl-devel aarch64 4:5.42.2-524.fc45 fedora 3.8 MiB perl-generators noarch 0:1.16-9.fc44 fedora 21.8 KiB python3-devel aarch64 0:3.15.0~b2-3.fc45 fedora 2.4 MiB python3-setuptools noarch 0:82.0.1-3.fc45 fedora 7.3 MiB rapidjson-devel aarch64 0:1.1.0^20241222git24b5e7a-4.fc44 fedora 785.8 KiB ruby-devel aarch64 0:4.0.5-33.fc45 fedora 1.6 MiB swig aarch64 0:4.4.1-7.fc45 fedora 6.0 MiB wxGTK-devel aarch64 0:3.2.9-2.fc44 fedora 74.3 KiB Installing dependencies: ImageMagick-libs aarch64 1:7.1.2.13-4.fc45 fedora 13.8 MiB LibRaw aarch64 0:0.22.1-1.fc45 fedora 2.5 MiB SDL3 aarch64 0:3.4.10-1.fc45 fedora 3.1 MiB abattis-cantarell-vf-fonts noarch 0:0.301-17.fc44 fedora 192.7 KiB adobe-mappings-cmap noarch 0:20231115-5.fc44 fedora 15.2 MiB adobe-mappings-cmap-deprecated noarch 0:20231115-5.fc44 fedora 582.1 KiB adobe-mappings-pdf noarch 0:20190401-12.fc44 fedora 4.4 MiB adwaita-cursor-theme noarch 0:50.0-1.fc45 fedora 11.4 MiB adwaita-icon-theme noarch 0:50.0-1.fc45 fedora 1.1 MiB adwaita-icon-theme-legacy noarch 0:46.2-7.fc45 fedora 2.1 MiB alsa-lib aarch64 0:1.2.16.1-1.fc45 fedora 1.5 MiB annobin-docs noarch 0:13.22-1.fc45 fedora 99.5 KiB annobin-plugin-gcc aarch64 0:13.22-1.fc45 fedora 718.6 KiB at-spi2-atk aarch64 0:2.60.4-2.fc45 fedora 359.7 KiB at-spi2-atk-devel aarch64 0:2.60.4-2.fc45 fedora 1.6 KiB at-spi2-core aarch64 0:2.60.4-2.fc45 fedora 1.7 MiB at-spi2-core-devel aarch64 0:2.60.4-2.fc45 fedora 4.5 MiB atk aarch64 0:2.60.4-2.fc45 fedora 296.8 KiB atk-devel aarch64 0:2.60.4-2.fc45 fedora 6.0 MiB avahi-glib aarch64 0:0.9~rc2-8.fc44 fedora 67.4 KiB avahi-libs aarch64 0:0.9~rc2-8.fc44 fedora 229.9 KiB boost aarch64 0:1.90.0-10.fc45 fedora 1.3 KiB boost-atomic aarch64 0:1.90.0-10.fc45 fedora 68.7 KiB boost-charconv aarch64 0:1.90.0-10.fc45 fedora 197.6 KiB boost-chrono aarch64 0:1.90.0-10.fc45 fedora 69.3 KiB boost-cobalt aarch64 0:1.90.0-10.fc45 fedora 667.0 KiB boost-container aarch64 0:1.90.0-10.fc45 fedora 69.3 KiB boost-context aarch64 0:1.90.0-10.fc45 fedora 68.4 KiB boost-contract aarch64 0:1.90.0-10.fc45 fedora 134.5 KiB boost-coroutine aarch64 0:1.90.0-10.fc45 fedora 68.9 KiB boost-date-time aarch64 0:1.90.0-10.fc45 fedora 68.1 KiB boost-fiber aarch64 0:1.90.0-10.fc45 fedora 134.5 KiB boost-filesystem aarch64 0:1.90.0-10.fc45 fedora 198.9 KiB boost-graph aarch64 0:1.90.0-10.fc45 fedora 333.5 KiB boost-iostreams aarch64 0:1.90.0-10.fc45 fedora 134.0 KiB boost-json aarch64 0:1.90.0-10.fc45 fedora 391.9 KiB boost-locale aarch64 0:1.90.0-10.fc45 fedora 659.6 KiB boost-log aarch64 0:1.90.0-10.fc45 fedora 1.4 MiB boost-math aarch64 0:1.90.0-10.fc45 fedora 796.1 KiB boost-nowide aarch64 0:1.90.0-10.fc45 fedora 68.7 KiB boost-numpy3 aarch64 0:1.90.0-10.fc45 fedora 69.3 KiB boost-process aarch64 0:1.90.0-10.fc45 fedora 69.6 KiB boost-program-options aarch64 0:1.90.0-10.fc45 fedora 267.2 KiB boost-python3 aarch64 0:1.90.0-10.fc45 fedora 268.1 KiB boost-random aarch64 0:1.90.0-10.fc45 fedora 69.4 KiB boost-regex aarch64 0:1.90.0-10.fc45 fedora 266.0 KiB boost-serialization aarch64 0:1.90.0-10.fc45 fedora 467.1 KiB boost-stacktrace aarch64 0:1.90.0-10.fc45 fedora 203.6 KiB boost-test aarch64 0:1.90.0-10.fc45 fedora 664.9 KiB boost-thread aarch64 0:1.90.0-10.fc45 fedora 135.4 KiB boost-timer aarch64 0:1.90.0-10.fc45 fedora 68.8 KiB boost-type_erasure aarch64 0:1.90.0-10.fc45 fedora 69.9 KiB boost-url aarch64 0:1.90.0-10.fc45 fedora 330.3 KiB boost-wave aarch64 0:1.90.0-10.fc45 fedora 917.9 KiB brotli aarch64 0:1.2.0-4.fc45 fedora 69.5 KiB brotli-devel aarch64 0:1.2.0-4.fc45 fedora 65.9 KiB bubblewrap aarch64 0:0.11.0-4.fc44 fedora 182.7 KiB bzip2-devel aarch64 0:1.0.8-23.fc44 fedora 309.8 KiB cairo aarch64 0:1.18.4-6.fc44 fedora 1.8 MiB cairo-devel aarch64 0:1.18.4-6.fc44 fedora 2.3 MiB cairo-gobject aarch64 0:1.18.4-6.fc44 fedora 67.0 KiB cairo-gobject-devel aarch64 0:1.18.4-6.fc44 fedora 7.0 KiB cdparanoia-libs aarch64 0:10.2-50.fc44 fedora 137.3 KiB cmake-data noarch 0:4.3.0-3.fc45 fedora 9.4 MiB cmake-filesystem aarch64 0:4.3.0-3.fc45 fedora 0.0 B cmake-rpm-macros noarch 0:4.3.0-3.fc45 fedora 8.4 KiB colord-libs aarch64 0:1.4.8-4.fc44 fedora 969.8 KiB cpp aarch64 0:16.1.1-2.fc45 fedora 40.8 MiB cups-filesystem noarch 1:2.4.19-3.fc45 fedora 0.0 B cups-libs aarch64 1:2.4.19-3.fc45 fedora 730.8 KiB dbus aarch64 1:1.16.2-1.fc45 fedora 0.0 B dbus-devel aarch64 1:1.16.2-1.fc45 fedora 131.7 KiB dbus-libs aarch64 1:1.16.2-1.fc45 fedora 397.5 KiB 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gcc-plugin-annobin aarch64 0:16.1.1-2.fc45 fedora 69.1 KiB gdk-pixbuf2 aarch64 0:2.44.6-1.fc45 fedora 2.7 MiB gdk-pixbuf2-devel aarch64 0:2.44.6-1.fc45 fedora 2.3 MiB gettext aarch64 0:1.0-1.fc45 fedora 18.5 MiB gettext-envsubst aarch64 0:1.0-1.fc45 fedora 106.5 KiB gettext-libs aarch64 0:1.0-1.fc45 fedora 2.3 MiB gettext-runtime aarch64 0:1.0-1.fc45 fedora 783.8 KiB glfw aarch64 1:3.4-7.fc45 fedora 421.2 KiB glib-networking aarch64 0:2.80.1-9.fc45 fedora 887.0 KiB glib2 aarch64 0:2.89.0-1.fc45 fedora 15.8 MiB glib2-devel aarch64 0:2.89.0-1.fc45 fedora 16.1 MiB glibc-devel aarch64 0:2.43.9000-20.fc45 fedora 2.3 MiB glycin-devel aarch64 0:2.1.1-1.fc45 fedora 126.2 KiB glycin-libs aarch64 0:2.1.1-1.fc45 fedora 4.1 MiB glycin-loaders aarch64 0:2.1.1-1.fc45 fedora 13.0 MiB google-droid-sans-fonts noarch 0:20200215-24.fc44 fedora 6.3 MiB google-noto-fonts-common noarch 0:20260601-2.fc45 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 0:20260601-2.fc45 fedora 1.4 MiB graphene aarch64 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aarch64 0:1.9.6-3.fc44 fedora 271.7 KiB kernel-headers aarch64 0:7.1.0-55.fc45 fedora 6.8 MiB lame-libs aarch64 0:3.100-21.fc44 fedora 1.2 MiB lcms2 aarch64 0:2.16-7.fc44 fedora 484.7 KiB lcms2-devel aarch64 0:2.16-7.fc44 fedora 135.7 KiB libGLEW aarch64 0:2.2.0-12.fc44 fedora 840.3 KiB libICE aarch64 0:1.1.2-4.fc44 fedora 222.2 KiB libSM aarch64 0:1.2.5-4.fc44 fedora 128.9 KiB libX11 aarch64 0:1.8.13-1.fc45 fedora 1.3 MiB libX11-common noarch 0:1.8.13-1.fc45 fedora 1.1 MiB libX11-devel aarch64 0:1.8.13-1.fc45 fedora 1.0 MiB libX11-xcb aarch64 0:1.8.13-1.fc45 fedora 66.9 KiB libXau aarch64 0:1.0.12-4.fc44 fedora 120.8 KiB libXau-devel aarch64 0:1.0.12-4.fc44 fedora 7.3 KiB libXcomposite aarch64 0:0.4.6-7.fc44 fedora 96.3 KiB libXcomposite-devel aarch64 0:0.4.6-7.fc44 fedora 7.6 KiB libXcursor aarch64 0:1.2.3-4.fc44 fedora 69.3 KiB libXcursor-devel aarch64 0:1.2.3-4.fc44 fedora 20.5 KiB libXdamage aarch64 0:1.1.6-7.fc44 fedora 95.5 KiB libXdamage-devel aarch64 0:1.1.6-7.fc44 fedora 2.5 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libstdc++-devel aarch64 0:16.1.1-2.fc45 fedora 40.3 MiB libstemmer aarch64 0:3.1.1-1.fc45 fedora 789.5 KiB libtextstyle aarch64 0:1.0-1.fc45 fedora 199.0 KiB libthai aarch64 0:0.1.30-2.fc44 fedora 824.9 KiB libthai-devel aarch64 0:0.1.30-2.fc44 fedora 651.3 KiB libtheora aarch64 1:1.1.1-41.fc44 fedora 468.3 KiB libtiff aarch64 0:4.7.1-2.fc44 fedora 659.0 KiB libtinysparql aarch64 0:3.11.1-2.fc45 fedora 1.1 MiB libubsan aarch64 0:16.1.1-2.fc45 fedora 476.0 KiB libultrahdr aarch64 0:1.4.0^20251202git8cbc983-1.fc44 fedora 347.6 KiB libunwind aarch64 0:1.8.3-1.fc44 fedora 351.8 KiB libuv aarch64 1:1.52.1-1.fc45 fedora 616.4 KiB libva aarch64 0:2.23.0-3.fc44 fedora 557.6 KiB libvisual aarch64 1:0.4.2-4.fc44 fedora 488.5 KiB libvorbis aarch64 1:1.3.7-20.fc45 fedora 845.3 KiB libwayland-client aarch64 0:1.24.0-3.fc44 fedora 69.9 KiB libwayland-cursor aarch64 0:1.24.0-3.fc44 fedora 81.2 KiB libwayland-egl aarch64 0:1.24.0-3.fc44 fedora 68.3 KiB libwayland-server aarch64 0:1.24.0-3.fc44 fedora 134.5 KiB libwebp aarch64 0:1.6.0-3.fc44 fedora 816.8 KiB libwmf-lite aarch64 0:0.2.13-9.fc44 fedora 159.6 KiB libxcb aarch64 0:1.17.0-7.fc44 fedora 2.1 MiB libxcb-devel aarch64 0:1.17.0-7.fc44 fedora 2.6 MiB libxcrypt-devel aarch64 0:4.5.2-3.fc44 fedora 31.0 KiB libxkbcommon aarch64 0:1.13.1-2.fc44 fedora 471.5 KiB libxkbcommon-devel aarch64 0:1.13.1-2.fc44 fedora 393.4 KiB libxshmfence aarch64 0:1.3.2-8.fc44 fedora 68.4 KiB libxslt aarch64 0:1.1.43-7.fc45 fedora 548.0 KiB libyaml aarch64 0:0.2.5-18.fc44 fedora 134.3 KiB libyuv aarch64 0:0-0.62.20260213git6067afd.fc45 fedora 590.9 KiB libzip aarch64 0:1.11.4-3.fc44 fedora 135.6 KiB llvm-filesystem aarch64 0:22.1.7-1.fc45 fedora 0.0 B llvm-libs aarch64 0:22.1.7-1.fc45 fedora 135.1 MiB lm_sensors-libs aarch64 0:3.6.0-24.fc44 fedora 93.7 KiB lzo aarch64 0:2.10-16.fc44 fedora 162.8 KiB lzo-devel aarch64 0:2.10-16.fc44 fedora 212.2 KiB lzo-minilzo aarch64 0:2.10-16.fc44 fedora 88.5 KiB mesa-dri-drivers aarch64 0:26.1.2-1.fc45 fedora 39.0 MiB mesa-filesystem aarch64 0:26.1.2-1.fc45 fedora 3.6 KiB mesa-libEGL aarch64 0:26.1.2-1.fc45 fedora 394.3 KiB mesa-libGL aarch64 0:26.1.2-1.fc45 fedora 398.0 KiB mesa-libGLU aarch64 0:9.0.3-8.fc44 fedora 329.5 KiB mesa-libGLU-devel aarch64 0:9.0.3-8.fc44 fedora 17.0 KiB mesa-libgbm aarch64 0:26.1.2-1.fc45 fedora 67.7 KiB mpdecimal aarch64 0:4.0.1-3.fc44 fedora 281.1 KiB mpg123-libs aarch64 0:1.32.10-4.fc45 fedora 754.2 KiB ncurses aarch64 0:6.6-2.fc45 fedora 895.8 KiB ninja-build aarch64 0:1.13.2-4.fc45 fedora 468.8 KiB noopenh264 aarch64 0:2.6.0-4.fc44 fedora 95.1 KiB openblas aarch64 0:0.3.29-3.fc45 fedora 111.7 KiB openblas-openmp aarch64 0:0.3.29-3.fc45 fedora 20.4 MiB openexr-libs aarch64 0:3.4.12-2.fc45 fedora 3.1 MiB openjpeg aarch64 0:2.5.4-3.fc44 fedora 412.2 KiB opus aarch64 0:1.6-2.fc44 fedora 455.8 KiB orc aarch64 0:0.4.41-3.fc44 fedora 874.1 KiB pango aarch64 0:1.57.1-1.fc45 fedora 1.2 MiB pango-devel aarch64 0:1.57.1-1.fc45 fedora 1.5 MiB pcre2-devel aarch64 0:10.47-1.fc44.1 fedora 2.1 MiB pcre2-utf16 aarch64 0:10.47-1.fc44.1 fedora 582.9 KiB pcre2-utf32 aarch64 0:10.47-1.fc44.1 fedora 582.9 KiB perl-AutoLoader noarch 0:5.74-524.fc45 fedora 20.6 KiB perl-AutoSplit noarch 0:5.74-524.fc45 fedora 23.1 KiB perl-B aarch64 0:1.89-524.fc45 fedora 545.3 KiB perl-Benchmark noarch 0:1.27-524.fc45 fedora 36.4 KiB perl-Carp noarch 0:1.54-521.fc44 fedora 46.6 KiB perl-Class-Struct noarch 0:0.68-524.fc45 fedora 25.4 KiB perl-Data-Dumper aarch64 0:2.192-523.fc45 fedora 135.6 KiB perl-Devel-PPPort aarch64 0:3.73-522.fc44 fedora 917.7 KiB perl-Digest noarch 0:1.20-521.fc44 fedora 35.3 KiB perl-Digest-MD5 aarch64 0:2.59-521.fc44 fedora 103.6 KiB perl-DynaLoader aarch64 0:1.57-524.fc45 fedora 32.1 KiB perl-Encode aarch64 4:3.24-524.fc45 fedora 4.8 MiB perl-Errno aarch64 0:1.38-524.fc45 fedora 8.4 KiB perl-Exporter noarch 0:5.79-521.fc44 fedora 54.3 KiB perl-ExtUtils-Command noarch 2:7.78-1.fc45 fedora 9.6 KiB perl-ExtUtils-Constant noarch 0:0.25-524.fc45 fedora 85.9 KiB perl-ExtUtils-Install noarch 0:2.22-521.fc44 fedora 85.5 KiB perl-ExtUtils-MakeMaker noarch 2:7.78-1.fc45 fedora 739.7 KiB perl-ExtUtils-Manifest noarch 1:1.75-521.fc44 fedora 84.8 KiB perl-ExtUtils-ParseXS noarch 1:3.63-1.fc45 fedora 721.6 KiB perl-Fcntl aarch64 0:1.20-524.fc45 fedora 92.7 KiB perl-Fedora-VSP noarch 0:0.001-38.fc44 fedora 39.7 KiB perl-File-Basename noarch 0:2.86-524.fc45 fedora 14.0 KiB perl-File-Compare noarch 0:1.100.800-524.fc45 fedora 5.6 KiB perl-File-Copy noarch 0:2.41-524.fc45 fedora 19.7 KiB perl-File-Find noarch 0:1.44-524.fc45 fedora 42.0 KiB perl-File-Path noarch 0:2.18-522.fc44 fedora 63.5 KiB perl-File-Temp noarch 1:0.231.200-2.fc44 fedora 163.7 KiB perl-File-stat noarch 0:1.14-524.fc45 fedora 12.5 KiB perl-FileHandle noarch 0:2.05-524.fc45 fedora 9.4 KiB perl-Getopt-Long noarch 1:2.58-521.fc44 fedora 144.5 KiB perl-Getopt-Std noarch 0:1.14-524.fc45 fedora 11.2 KiB perl-HTTP-Tiny noarch 0:0.096-1.fc45 fedora 162.4 KiB perl-Hash-Util aarch64 0:0.32-524.fc45 fedora 98.9 KiB perl-Hash-Util-FieldHash aarch64 0:1.27-524.fc45 fedora 106.5 KiB perl-IO aarch64 0:1.55-524.fc45 fedora 191.3 KiB perl-IO-Socket-IP noarch 0:0.44-1.fc45 fedora 100.5 KiB perl-IO-Socket-SSL noarch 0:2.098-3.fc45 fedora 723.5 KiB perl-IPC-Open3 noarch 0:1.24-524.fc45 fedora 27.7 KiB perl-MIME-Base32 noarch 0:1.303-25.fc44 fedora 30.7 KiB perl-MIME-Base64 aarch64 0:3.16-521.fc44 fedora 93.9 KiB perl-Net-SSLeay aarch64 0:1.96-2.fc45 fedora 1.4 MiB perl-POSIX aarch64 0:2.23-524.fc45 fedora 261.5 KiB perl-PathTools aarch64 0:3.94-521.fc44 fedora 223.9 KiB perl-Pod-Escapes noarch 1:1.07-521.fc44 fedora 24.9 KiB perl-Pod-Perldoc noarch 0:3.28.01-522.fc44 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.48-2.fc45 fedora 565.9 KiB perl-Pod-Usage noarch 4:2.05-521.fc44 fedora 86.3 KiB perl-Scalar-List-Utils aarch64 5:1.70-2.fc44 fedora 152.8 KiB perl-SelectSaver noarch 0:1.02-524.fc45 fedora 2.2 KiB perl-Socket aarch64 4:2.041-1.fc45 fedora 144.7 KiB perl-Storable aarch64 1:3.41-1.fc45 fedora 243.1 KiB perl-Symbol noarch 0:1.09-524.fc45 fedora 6.8 KiB perl-Term-ANSIColor noarch 0:5.01-522.fc44 fedora 97.5 KiB perl-Term-Cap noarch 0:1.18-521.fc44 fedora 29.3 KiB perl-Test-Harness noarch 1:3.52-5.fc44 fedora 560.8 KiB perl-Text-ParseWords noarch 0:3.31-521.fc44 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 0:2024.001-521.fc44 fedora 22.6 KiB perl-Time-HiRes aarch64 4:1.9778-521.fc44 fedora 151.6 KiB perl-Time-Local noarch 2:1.350-521.fc44 fedora 69.0 KiB perl-URI noarch 0:5.35-1.fc45 fedora 268.2 KiB perl-base noarch 0:2.27-524.fc45 fedora 12.6 KiB perl-constant noarch 0:1.33-522.fc44 fedora 26.2 KiB perl-fields noarch 0:2.27-524.fc45 fedora 11.9 KiB perl-if noarch 0:0.61.000-524.fc45 fedora 5.8 KiB perl-interpreter aarch64 4:5.42.2-524.fc45 fedora 174.7 KiB perl-lib aarch64 0:0.65-524.fc45 fedora 8.5 KiB perl-libnet noarch 0:3.15-522.fc44 fedora 289.4 KiB perl-libs aarch64 4:5.42.2-524.fc45 fedora 11.6 MiB perl-locale noarch 0:1.13-524.fc45 fedora 6.1 KiB perl-macros noarch 4:5.42.2-524.fc45 fedora 5.5 KiB perl-mro aarch64 0:1.29-524.fc45 fedora 81.5 KiB perl-overload noarch 0:1.40-524.fc45 fedora 71.6 KiB perl-overloading noarch 0:0.02-524.fc45 fedora 4.9 KiB perl-parent noarch 1:0.244-521.fc44 fedora 10.3 KiB perl-podlators noarch 1:6.0.2-521.fc44 fedora 317.5 KiB perl-vars noarch 0:1.05-524.fc45 fedora 3.9 KiB perl-version aarch64 9:0.99.34-1.fc45 fedora 160.8 KiB pixman aarch64 0:0.46.2-3.fc44 fedora 654.3 KiB pixman-devel aarch64 0:0.46.2-3.fc44 fedora 56.1 KiB pulseaudio-libs aarch64 0:17.0-9.fc44 fedora 3.4 MiB pyproject-rpm-macros noarch 0:1.22.2-1.fc45 fedora 147.2 KiB python-pip-wheel noarch 0:26.1.1-6.fc45 fedora 1.2 MiB python-rpm-macros noarch 0:3.15-1.fc45 fedora 28.0 KiB python3 aarch64 0:3.15.0~b2-3.fc45 fedora 84.8 KiB python3-libs aarch64 0:3.15.0~b2-3.fc45 fedora 49.5 MiB python3-numpy aarch64 1:2.4.6-2.fc45 fedora 36.4 MiB python3-numpy-f2py aarch64 1:2.4.6-2.fc45 fedora 2.1 MiB python3-packaging noarch 0:26.2-2.fc45 fedora 1.0 MiB python3-pyparsing noarch 0:3.1.2-17.fc45 fedora 1.0 MiB python3-rpm-generators noarch 0:14-15.fc45 fedora 81.7 KiB python3-rpm-macros noarch 0:3.15-1.fc45 fedora 6.5 KiB rav1e-libs aarch64 0:0.8.1-3.fc44 fedora 2.1 MiB rhash aarch64 0:1.4.5-4.fc44 fedora 394.5 KiB ruby aarch64 0:4.0.5-33.fc45 fedora 153.9 KiB ruby-default-gems noarch 0:4.0.5-33.fc45 fedora 64.3 KiB ruby-libs aarch64 0:4.0.5-33.fc45 fedora 19.0 MiB rubygem-psych aarch64 0:5.3.1-33.fc45 fedora 175.0 KiB rubygems noarch 0:4.0.13-1.fc45 fedora 1.8 MiB rubypick noarch 0:1.1.1-24.fc44 fedora 4.4 KiB sdl2-compat aarch64 0:2.32.70-1.fc45 fedora 484.4 KiB shared-mime-info aarch64 0:2.4-11.fc45 fedora 5.3 MiB spirv-tools-libs aarch64 0:2026.2-2.fc45 fedora 5.8 MiB svt-av1-libs aarch64 0:3.1.2-2.fc44 fedora 3.4 MiB sysprof-capture-devel aarch64 0:50.0-1.fc45 fedora 770.3 KiB systemd-devel aarch64 0:261~rc3-3.fc45 fedora 623.0 KiB systemd-rpm-macros noarch 0:261~rc3-3.fc45 fedora 8.5 KiB systemtap-sdt-devel aarch64 0:5.5-2.fc45 fedora 184.5 KiB systemtap-sdt-dtrace aarch64 0:5.5-2.fc45 fedora 181.1 KiB tzdata noarch 0:2026b-1.fc45 fedora 1.2 MiB urw-base35-bookman-fonts noarch 0:20200910-28.fc45 fedora 1.4 MiB urw-base35-c059-fonts noarch 0:20200910-28.fc45 fedora 1.4 MiB urw-base35-d050000l-fonts noarch 0:20200910-28.fc45 fedora 84.3 KiB urw-base35-fonts noarch 0:20200910-28.fc45 fedora 5.3 KiB urw-base35-fonts-common noarch 0:20200910-28.fc45 fedora 37.4 KiB urw-base35-gothic-fonts noarch 0:20200910-28.fc45 fedora 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 0:20200910-28.fc45 fedora 1.0 MiB urw-base35-nimbus-roman-fonts noarch 0:20200910-28.fc45 fedora 1.4 MiB urw-base35-nimbus-sans-fonts noarch 0:20200910-28.fc45 fedora 2.4 MiB urw-base35-p052-fonts noarch 0:20200910-28.fc45 fedora 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 0:20200910-28.fc45 fedora 64.9 KiB urw-base35-z003-fonts noarch 0:20200910-28.fc45 fedora 390.8 KiB vim-filesystem noarch 2:9.2.597-1.fc45 fedora 40.0 B vulkan-loader aarch64 0:1.4.350.0-1.fc45 fedora 613.9 KiB wayland-devel aarch64 0:1.24.0-3.fc44 fedora 711.9 KiB webkit2gtk4.1 aarch64 0:2.53.3-2.fc45 fedora 94.1 MiB wxBase aarch64 0:3.2.9-2.fc44 fedora 2.9 MiB wxBase-devel aarch64 0:3.2.9-2.fc44 fedora 6.7 MiB wxGTK aarch64 0:3.2.9-2.fc44 fedora 16.0 MiB wxGTK-gl aarch64 0:3.2.9-2.fc44 fedora 134.4 KiB wxGTK-i18n noarch 0:3.2.9-2.fc44 fedora 5.7 MiB wxGTK-media aarch64 0:3.2.9-2.fc44 fedora 134.3 KiB wxGTK-webview aarch64 0:3.2.9-2.fc44 fedora 267.1 KiB xdg-dbus-proxy aarch64 0:0.1.7-1.fc45 fedora 98.7 KiB xkeyboard-config noarch 0:2.47-1.fc45 fedora 6.4 MiB xml-common noarch 0:0.6.3-68.fc44 fedora 78.4 KiB xorg-x11-proto-devel noarch 0:2025.1-2.fc44 fedora 1.8 MiB xprop aarch64 0:1.2.8-5.fc44 fedora 78.5 KiB xz-devel aarch64 1:5.8.3-1.fc45 fedora 258.8 KiB zlib-ng-compat-devel aarch64 0:2.3.3-5.fc45 fedora 107.0 KiB Transaction Summary: Installing: 464 packages Total size of inbound packages is 374 MiB. Need to download 374 MiB. After this operation, 1 GiB extra will be used (install 1 GiB, remove 0 B). [ 1/464] ImageMagick-1:7.1.2.13-4.fc45 100% | 709.6 KiB/s | 73.1 KiB | 00m00s [ 2/464] desktop-file-utils-0:0.28-7.f 100% | 1.2 MiB/s | 69.6 KiB | 00m00s [ 3/464] dos2unix-0:7.5.5-1.fc45.aarch 100% | 2.4 MiB/s | 300.3 KiB | 00m00s [ 4/464] eigen3-devel-0:5.0.1-3.fc44.n 100% | 6.4 MiB/s | 1.3 MiB | 00m00s [ 5/464] cmake-0:4.3.0-3.fc45.aarch64 100% | 17.5 MiB/s | 10.8 MiB | 00m01s [ 6/464] inchi-devel-0:1.0.6-14.fc44.a 100% | 681.4 KiB/s | 24.5 KiB | 00m00s [ 7/464] libxml2-devel-0:2.13.9-2.fc45 100% | 10.1 MiB/s | 456.7 KiB | 00m00s [ 8/464] make-1:4.4.1-12.fc44.aarch64 100% | 10.8 MiB/s | 583.6 KiB | 00m00s [ 9/464] perl-devel-4:5.42.2-524.fc45. 100% | 7.6 MiB/s | 663.2 KiB | 00m00s [ 10/464] perl-generators-0:1.16-9.fc44 100% | 465.4 KiB/s | 16.3 KiB | 00m00s [ 11/464] boost-devel-0:1.90.0-10.fc45. 100% | 16.8 MiB/s | 15.0 MiB | 00m01s [ 12/464] rapidjson-devel-0:1.1.0^20241 100% | 3.9 MiB/s | 143.1 KiB | 00m00s [ 13/464] python3-devel-0:3.15.0~b2-3.f 100% | 5.9 MiB/s | 480.9 KiB | 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python3-rpm-macros-0:3.15-1.f 100% | 300.7 KiB/s | 12.3 KiB | 00m00s [462/464] cmake-rpm-macros-0:4.3.0-3.fc 100% | 266.5 KiB/s | 13.6 KiB | 00m00s [463/464] ninja-build-0:1.13.2-4.fc45.a 100% | 2.4 MiB/s | 183.7 KiB | 00m00s [464/464] llvm-libs-0:22.1.7-1.fc45.aar 100% | 4.3 MiB/s | 32.8 MiB | 00m08s -------------------------------------------------------------------------------- [464/464] Total 100% | 14.2 MiB/s | 373.9 MiB | 00m26s Running transaction [ 1/466] Verify package files 100% | 378.0 B/s | 464.0 B | 00m01s [ 2/466] Prepare transaction 100% | 1.2 KiB/s | 464.0 B | 00m00s [ 3/466] Installing glib2-0:2.89.0-1.f 100% | 195.4 MiB/s | 15.8 MiB | 00m00s [ 4/466] Installing xorg-x11-proto-dev 100% | 163.3 MiB/s | 1.8 MiB | 00m00s [ 5/466] Installing boost-container-0: 100% | 68.7 MiB/s | 70.3 KiB | 00m00s [ 6/466] Installing libicu-0:78.3-3.fc 100% | 357.1 MiB/s | 37.9 MiB | 00m00s [ 7/466] Installing libjpeg-turbo-0:3. 100% | 243.2 MiB/s | 747.0 KiB | 00m00s [ 8/466] Installing 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libxkbcommon-devel 100% | 96.5 MiB/s | 395.1 KiB | 00m00s [441/466] Installing gtk3-devel-0:3.24. 100% | 293.0 MiB/s | 34.9 MiB | 00m00s [442/466] Installing inchi-libs-0:1.0.6 100% | 151.8 MiB/s | 1.2 MiB | 00m00s [443/466] Installing libstdc++-devel-0: 100% | 378.3 MiB/s | 40.5 MiB | 00m00s [444/466] Installing rhash-0:1.4.5-4.fc 100% | 12.6 MiB/s | 399.8 KiB | 00m00s [445/466] Installing libuv-1:1.52.1-1.f 100% | 201.6 MiB/s | 619.2 KiB | 00m00s [446/466] Installing jsoncpp-0:1.9.6-3. 100% | 133.4 MiB/s | 273.3 KiB | 00m00s [447/466] Installing cmake-0:4.3.0-3.fc 100% | 241.3 MiB/s | 32.8 MiB | 00m00s [448/466] Installing cmake-data-0:4.3.0 100% | 74.6 MiB/s | 10.1 MiB | 00m00s [449/466] Installing gcc-c++-0:16.1.1-2 100% | 274.9 MiB/s | 44.8 MiB | 00m00s [450/466] Installing inchi-devel-0:1.0. 100% | 95.5 MiB/s | 97.8 KiB | 00m00s [451/466] Installing wxGTK-devel-0:3.2. 100% | 75.1 MiB/s | 76.9 KiB | 00m00s [452/466] Installing perl-devel-4:5.42. 100% | 84.6 MiB/s | 3.8 MiB | 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Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1781740800 Wrote: /builddir/build/SRPMS/openbabel-3.2.0-1.fc45.src.rpm Updating and loading repositories: fedora 100% | 47.2 KiB/s | 11.9 KiB | 00m00s Copr repository 100% | 8.1 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "ImageMagick-1:7.1.2.13-4.fc45.aarch64" is already installed. Package "boost-devel-1.90.0-10.fc45.aarch64" is already installed. Package "cmake-4.3.0-3.fc45.aarch64" is already installed. Package "desktop-file-utils-0.28-7.fc45.aarch64" is already installed. Package "dos2unix-7.5.5-1.fc45.aarch64" is already installed. Package "eigen3-devel-5.0.1-3.fc44.noarch" is already installed. Package "gcc-c++-16.1.1-2.fc45.aarch64" is already installed. Package "inchi-devel-1.0.6-14.fc44.aarch64" is already installed. Package "libxml2-devel-2.13.9-2.fc45.aarch64" is already installed. Package "make-1:4.4.1-12.fc44.aarch64" is already installed. Package "perl-devel-4:5.42.2-524.fc45.aarch64" is already installed. Package "perl-generators-1.16-9.fc44.noarch" is already installed. Package "python3-devel-3.15.0~b2-3.fc45.aarch64" is already installed. Package "python3-setuptools-82.0.1-3.fc45.noarch" is already installed. Package "rapidjson-devel-1.1.0^20241222git24b5e7a-4.fc44.aarch64" is already installed. Package "ruby-devel-4.0.5-33.fc45.aarch64" is already installed. Nothing to do. Package "swig-4.4.1-7.fc45.aarch64" is already installed. Package "wxGTK-devel-3.2.9-2.fc44.aarch64" is already installed. Finish: build setup for openbabel-3.2.0-1.fc45.src.rpm Start: rpmbuild openbabel-3.2.0-1.fc45.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1781740800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.pPZLT1 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.OyKLui + umask 022 + cd /builddir/build/BUILD/openbabel-3.2.0-build + cd /builddir/build/BUILD/openbabel-3.2.0-build + rm -rf openbabel-openbabel-3-2-0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/openbabel-openbabel-3-2-0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd openbabel-openbabel-3-2-0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (openbabel-perl.patch):' Patch #0 (openbabel-perl.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .perl_path --fuzz=0 patching file scripts/CMakeLists.txt Patch #1 (openbabel-plugindir.patch): + echo 'Patch #1 (openbabel-plugindir.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .plugindir --fuzz=0 patching file CMakeLists.txt + echo 'Patch #5 (openbabel-fix-libdir-in-pkgconfig.patch):' Patch #5 (openbabel-fix-libdir-in-pkgconfig.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file openbabel-3.pc.cmake + rm -rf src/formats/libinchi + dos2unix -k data/chemdrawcdx.h include/openbabel/tautomer.h include/openbabel/math/align.h src/math/align.cpp test/testsmartssym.py dos2unix: converting file data/chemdrawcdx.h to Unix format... dos2unix: converting file include/openbabel/tautomer.h to Unix format... dos2unix: converting file include/openbabel/math/align.h to Unix format... dos2unix: converting file src/math/align.cpp to Unix format... dos2unix: converting file test/testsmartssym.py to Unix format... + magick src/GUI/babel.xpm -transparent white babel.png + pushd doc ~/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/doc ~/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 + for man in *.1 ++ basename obabel.1 .1 + html=obabel.html + '[' -f obabel.html ']' + rm obabel.html + for man in *.1 ++ basename obchiral.1 .1 + html=obchiral.html + '[' -f obchiral.html ']' + rm obchiral.html + for man in *.1 ++ basename obconformer.1 .1 + html=obconformer.html + '[' -f obconformer.html ']' + rm obconformer.html + for man in *.1 ++ basename obdistgen.1 .1 + html=obdistgen.html + '[' -f obdistgen.html ']' + for man in *.1 ++ basename obenergy.1 .1 + html=obenergy.html + '[' -f obenergy.html ']' + rm obenergy.html + for man in *.1 ++ basename obfit.1 .1 + html=obfit.html + '[' -f obfit.html ']' + rm obfit.html + for man in *.1 ++ basename obgen.1 .1 + html=obgen.html + '[' -f obgen.html ']' + rm obgen.html + for man in *.1 ++ basename obgrep.1 .1 + html=obgrep.html + '[' -f obgrep.html ']' + rm obgrep.html + for man in *.1 ++ basename obgui.1 .1 + html=obgui.html + '[' -f obgui.html ']' + rm obgui.html + for man in *.1 ++ basename obminimize.1 .1 + html=obminimize.html + '[' -f obminimize.html ']' + rm obminimize.html + for man in *.1 ++ basename obprobe.1 .1 + html=obprobe.html + '[' -f obprobe.html ']' + rm obprobe.html + for man in *.1 ++ basename obprop.1 .1 + html=obprop.html + '[' -f obprop.html ']' + rm obprop.html + for man in *.1 ++ basename obrms.1 .1 + html=obrms.html + '[' -f obrms.html ']' + for man in *.1 ++ basename obrotamer.1 .1 + html=obrotamer.html + '[' -f obrotamer.html ']' + rm obrotamer.html + for man in *.1 ++ basename obrotate.1 .1 + html=obrotate.html + '[' -f obrotate.html ']' + rm obrotate.html + for man in *.1 ++ basename obspectrophore.1 .1 + html=obspectrophore.html + '[' -f obspectrophore.html ']' + rm obspectrophore.html + for man in *.1 ++ basename obsym.1 .1 + html=obsym.html + '[' -f obsym.html ']' + for man in *.1 ++ basename obtautomer.1 .1 + html=obtautomer.html + '[' -f obtautomer.html ']' + for man in *.1 ++ basename obthermo.1 .1 + html=obthermo.html + '[' -f obthermo.html ']' + for man in *.1 ++ basename roundtrip.1 .1 + html=roundtrip.html ~/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 + '[' -f roundtrip.html ']' + popd + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.nbNYUE + umask 022 + cd /builddir/build/BUILD/openbabel-3.2.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd openbabel-openbabel-3-2-0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCMAKE_SKIP_RPATH:BOOL=ON -DBUILD_GUI:BOOL=ON -DPYTHON_BINDINGS:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPERL_BINDINGS:BOOL=ON -DRUBY_BINDINGS:BOOL=ON -DWITH_MAEPARSER:BOOL=OFF -DWITH_COORDGEN:BOOL=OFF -DOB_PLUGIN_INSTALL_DIR:PATH=lib64/openbabel3 -DOPENBABEL_USE_SYSTEM_INCHI=true -DINCHI_INCLUDE_DIR:PATH=/usr/include/inchi -DINCHI_LIBRARY:FILEPATH=/usr/lib64/libinchi.so -DENABLE_VERSIONED_FORMATS=false -DRUN_SWIG:BOOL=ON -DENABLE_TESTS:BOOL=ON -DOPTIMIZE_NATIVE=OFF -DGLIBC_24_COMPATIBLE:BOOL=OFF -DEigen3_DIR:PATH=/usr/share/cmake/eigen3 -DRUBY_INSTDIR:PATH=/usr/lib64/ruby/vendor_ruby -- The C compiler identification is GNU 16.1.1 -- The CXX compiler identification is GNU 16.1.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.13.9") -- Found ZLIB: /usr/lib64/libz.so (found version "1.3.1") -- Found wxWidgets: -pthread;;;-lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.9") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for xdrstdio_create -- Looking for xdrstdio_create - not found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success Using built-in specs. COLLECT_GCC=/usr/bin/gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/aarch64-redhat-linux/16/lto-wrapper Target: aarch64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,objc,obj-c++,ada,go,d,m2,cobol,algol68,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugzilla.redhat.com/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --enable-libstdcxx-backtrace --with-libstdcxx-zoneinfo=/usr/share/zoneinfo --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl=/builddir/build/BUILD/gcc-16.1.1-build/gcc-16.1.1-20260515/obj-aarch64-redhat-linux/isl-install --enable-gnu-indirect-function --build=aarch64-redhat-linux --with-build-config=bootstrap-lto --enable-link-serialization=1 --disable-libssp --disable-libquadmath Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 16.1.1 20260515 (Red Hat 16.1.1-2) (GCC) -- Found Boost: /usr/lib64/cmake/Boost-1.90.0/BoostConfig.cmake (found version "1.90.0") found components: program_options iostreams -- Found Boost: /usr/lib64/cmake/Boost-1.90.0/BoostConfig.cmake (found version "1.90.0") found components: filesystem iostreams unit_test_framework -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. -- Found PkgConfig: /usr/bin/pkg-config (found version "2.5.1") -- Found RapidJSON: /usr/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/include -- Checking for module 'cairo' -- Found cairo, version 1.18.4 -- Found Cairo: /usr/lib64/libcairo.so -- Cairo found. PNG output will be supported. -- Found Perl: /usr/bin/perl (found version "5.42.2") -- Found Boost: /usr/lib64/cmake/Boost-1.90.0/BoostConfig.cmake (found suitable version "1.90.0", minimum required is "1.45.0") found components: system -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost: /usr/lib64/cmake/Boost-1.90.0/BoostConfig.cmake (found version "1.90.0") found components: program_options iostreams -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built -- Found Python: /usr/bin/python3.15 (found version "3.15.0") found components: Interpreter -- Found SWIG: /usr/bin/swig (found version "4.4.1") -- Found SWIG: /usr/bin/swig (found suitable version "4.4.1", minimum required is "2.0") -- Found Python: /usr/bin/python3.15 (found version "3.15.0") found components: Interpreter Development Development.Module Development.Embed -- Python bindings will be compiled -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.42.2") -- Perl bindings will be compiled -- Found Ruby: /usr/bin/ruby (found version "4.0.5") found components: Interpreter Development -- Ruby bindings will be compiled -- Configuring done (6.1s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR PYTHON_EXECUTABLE SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j4 --verbose Change Dir: '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 4 [0/2] /usr/bin/cmake -P /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/CMakeFiles/VerifyGlobs.cmake [1/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bondtyp.txt BondTypeData BondTypeData > bondtyp.h [2/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/atomtyp.txt AtomTypeData AtomTypeData > atomtyp.h [3/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/phmodel.txt PhModelData PhModelData > phmodeldata.h [4/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/ringtyp.txt RingTypeData RingTypeData > ringtyp.h [5/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/torlib.txt TorsionDefaults TorsionDefaults > torlib.h [6/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/resdata.txt ResidueData ResidueData > resdata.h [7/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/types.txt TypesData TypesData > types.h [8/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/space-groups.txt SpaceGroupsData SpaceGroupsData > spacegroups.h [9/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/atomization-energies.txt AtomicHeatOfFormationData AtomicHeatOfFormationData > atomizationenergies.h [10/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/base.cpp.o -MF src/CMakeFiles/openbabel.dir/base.cpp.o.d -o src/CMakeFiles/openbabel.dir/base.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/base.cpp [11/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bitvec.cpp.o -MF src/CMakeFiles/openbabel.dir/bitvec.cpp.o.d -o src/CMakeFiles/openbabel.dir/bitvec.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bitvec.cpp [12/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bond.cpp.o -MF src/CMakeFiles/openbabel.dir/bond.cpp.o.d -o src/CMakeFiles/openbabel.dir/bond.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp: In constructor ‘OpenBabel::OBBond::OBBond()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:63:18: warning: ‘OpenBabel::OBBond::Visit’ is deprecated: Use OBBitVec objects instead to be fully thread-safe. [-Wdeprecated-declarations] 63 | OBBond::OBBond() /*: d(new OBBondPrivate)*/ | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:98:12: note: declared here 98 | bool Visit; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:63:18: warning: ‘OpenBabel::OBBond::Visit’ is deprecated: Use OBBitVec objects instead to be fully thread-safe. [-Wdeprecated-declarations] 63 | OBBond::OBBond() /*: d(new OBBondPrivate)*/ | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:98:12: note: declared here 98 | bool Visit; | ^~~~~ [13/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/atom.cpp.o -MF src/CMakeFiles/openbabel.dir/atom.cpp.o.d -o src/CMakeFiles/openbabel.dir/atom.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/atom.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/atom.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/atom.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [14/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -MF src/CMakeFiles/openbabel.dir/bondtyper.cpp.o.d -o src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bondtyper.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bondtyper.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bondtyper.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bondtyper.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [15/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/alias.cpp.o -MF src/CMakeFiles/openbabel.dir/alias.cpp.o.d -o src/CMakeFiles/openbabel.dir/alias.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/alias.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/alias.h:20, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/alias.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/alias.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [16/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/macrocycle.cpp.o -MF src/CMakeFiles/openbabel.dir/macrocycle.cpp.o.d -o src/CMakeFiles/openbabel.dir/macrocycle.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/macrocycle.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/macrocycle.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [17/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/chargemodel.cpp.o -MF src/CMakeFiles/openbabel.dir/chargemodel.cpp.o.d -o src/CMakeFiles/openbabel.dir/chargemodel.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chargemodel.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chargemodel.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [18/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/chains.cpp.o -MF src/CMakeFiles/openbabel.dir/chains.cpp.o.d -o src/CMakeFiles/openbabel.dir/chains.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chains.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chains.cpp:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [19/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data_utilities.cpp.o -MF src/CMakeFiles/openbabel.dir/data_utilities.cpp.o.d -o src/CMakeFiles/openbabel.dir/data_utilities.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data_utilities.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data_utilities.cpp:30: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [20/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/descriptor.cpp.o -MF src/CMakeFiles/openbabel.dir/descriptor.cpp.o.d -o src/CMakeFiles/openbabel.dir/descriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptor.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptor.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [21/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data.cpp.o -MF src/CMakeFiles/openbabel.dir/data.cpp.o.d -o src/CMakeFiles/openbabel.dir/data.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [22/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/canon.cpp.o -MF src/CMakeFiles/openbabel.dir/canon.cpp.o.d -o src/CMakeFiles/openbabel.dir/canon.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/canon.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/canon.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [23/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/builder.cpp.o -MF src/CMakeFiles/openbabel.dir/builder.cpp.o.d -o src/CMakeFiles/openbabel.dir/builder.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/builder.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/builder.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/builder.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [24/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/format.cpp.o -MF src/CMakeFiles/openbabel.dir/format.cpp.o.d -o src/CMakeFiles/openbabel.dir/format.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/format.cpp [25/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/elements.cpp.o -MF src/CMakeFiles/openbabel.dir/elements.cpp.o.d -o src/CMakeFiles/openbabel.dir/elements.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/elements.cpp [26/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -MF src/CMakeFiles/openbabel.dir/fingerprint.cpp.o.d -o src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprint.cpp [27/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/grid.cpp.o -MF src/CMakeFiles/openbabel.dir/grid.cpp.o.d -o src/CMakeFiles/openbabel.dir/grid.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:55:18: warning: ‘virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)’ was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:123:10: note: by ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’ 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In constructor ‘OpenBabel::OBFloatGrid::OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In destructor ‘virtual OpenBabel::OBFloatGrid::~OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp: In member function ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:82:5: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 82 | _ival=nullptr; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:82:5: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 82 | _ival=nullptr; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ [28/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/griddata.cpp.o -MF src/CMakeFiles/openbabel.dir/griddata.cpp.o.d -o src/CMakeFiles/openbabel.dir/griddata.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:31, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:55:18: warning: ‘virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)’ was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:123:10: note: by ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’ 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In constructor ‘OpenBabel::OBFloatGrid::OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In destructor ‘virtual OpenBabel::OBFloatGrid::~OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp: In member function ‘void OpenBabel::OBGridData::GetOriginVector(double*) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:194:24: warning: ‘void OpenBabel::OBFloatGrid::GetMin(double*)’ is deprecated: Use GetMin() instead [-Wdeprecated-declarations] 194 | d->floatGrid.GetMin(o); | ~~~~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:132:10: note: declared here 132 | void GetMin(double *a) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp: In member function ‘void OpenBabel::OBGridData::SetLimits(const double*, const double*, const double*, const double*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:235:27: warning: ‘void OpenBabel::OBFloatGrid::SetLimits(const double*, const double*, const double*, const double*)’ is deprecated: Use vector version instead [-Wdeprecated-declarations] 235 | d->floatGrid.SetLimits(origin, x, y, z); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:229:10: note: declared here 229 | void SetLimits(const double origin[3], const double x[3], const double y[3], | ^~~~~~~~~ [29/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/graphsym.cpp.o -MF src/CMakeFiles/openbabel.dir/graphsym.cpp.o.d -o src/CMakeFiles/openbabel.dir/graphsym.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/graphsym.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/graphsym.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/graphsym.cpp:30: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [30/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/kekulize.cpp.o -MF src/CMakeFiles/openbabel.dir/kekulize.cpp.o.d -o src/CMakeFiles/openbabel.dir/kekulize.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp: In function ‘bool OpenBabel::NeedsDoubleBond(OBAtom*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp:100:15: warning: unused variable ‘nbr’ [-Wunused-variable] 100 | OBAtom *nbr = bond->GetNbrAtom(atom); | ^~~ [31/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/locale.cpp.o -MF src/CMakeFiles/openbabel.dir/locale.cpp.o.d -o src/CMakeFiles/openbabel.dir/locale.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/locale.cpp [32/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/generic.cpp.o -MF src/CMakeFiles/openbabel.dir/generic.cpp.o.d -o src/CMakeFiles/openbabel.dir/generic.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/generic.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/generic.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/generic.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [33/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/matrix.cpp.o -MF src/CMakeFiles/openbabel.dir/matrix.cpp.o.d -o src/CMakeFiles/openbabel.dir/matrix.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/matrix.cpp [34/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/isomorphism.cpp.o -MF src/CMakeFiles/openbabel.dir/isomorphism.cpp.o.d -o src/CMakeFiles/openbabel.dir/isomorphism.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/isomorphism.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/isomorphism.cpp:3: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [35/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/molchrg.cpp.o -MF src/CMakeFiles/openbabel.dir/molchrg.cpp.o.d -o src/CMakeFiles/openbabel.dir/molchrg.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/molchrg.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/molchrg.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [36/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/forcefield.cpp.o -MF src/CMakeFiles/openbabel.dir/forcefield.cpp.o.d -o src/CMakeFiles/openbabel.dir/forcefield.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:55:18: warning: ‘virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)’ was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:123:10: note: by ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’ 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In constructor ‘OpenBabel::OBFloatGrid::OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In destructor ‘virtual OpenBabel::OBFloatGrid::~OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:435:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 435 | if (_ignoreAtom == a) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:437:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 437 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:447:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 447 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:457:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 457 | if (_ignoreAtom == d) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘double OpenBabel::OBFFConstraints::GetConstraintEnergy()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:526:53: warning: ‘static double OpenBabel::OBForceField::VectorLengthDerivative(OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 526 | rab = OBForceField::VectorLengthDerivative(da, db); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1569:19: note: declared here 1569 | static double VectorLengthDerivative(vector3 &a, vector3 &b); | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:543:54: warning: ‘static double OpenBabel::OBForceField::VectorAngleDerivative(OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 543 | theta = OBForceField::VectorAngleDerivative(da, db, dc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1585:19: note: declared here 1585 | static double VectorAngleDerivative(vector3 &a, vector3 &b, vector3 &c); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:562:56: warning: ‘static double OpenBabel::OBForceField::VectorTorsionDerivative(OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 562 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1618:19: note: declared here 1618 | static double VectorTorsionDerivative(vector3 &a, vector3 &b, vector3 &c, vector3 &d); | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintType(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:709:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 709 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘double OpenBabel::OBFFConstraints::GetConstraintValue(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:717:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 717 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomA(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:725:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 725 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomB(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:733:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 733 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomC(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:741:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 741 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomD(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:749:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 749 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBForceField::SystematicRotorSearchInitialize(unsigned int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1224:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1224 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotamer.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:32: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBForceField::FastRotorSearch(bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1345:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1345 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1393:34: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1393 | num_permutations = factorial[num_rotors_to_permute]; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1397:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1397 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1410 | for (int i=0; i >&, std::vector, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1619:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 1619 | if (j == rotorKey[i]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1638:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 1638 | if (j == rotorKey[i]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1678:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1678 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:668:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:664:20: note: ‘constraint’ declared here 664 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:668:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:664:20: note: ‘constraint’ declared here 664 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:679:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:673:20: note: ‘constraint’ declared here 673 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:679:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:673:20: note: ‘constraint’ declared here 673 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:691:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:684:20: note: ‘constraint’ declared here 684 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:691:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:684:20: note: ‘constraint’ declared here 684 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:704:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:696:20: note: ‘constraint’ declared here 696 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:704:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:696:20: note: ‘constraint’ declared here 696 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddIgnore(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:624:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM [(double *)&constraint + 16B]’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddIgnore(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:621:20: note: ‘constraint’ declared here 621 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:635:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:631:20: note: ‘constraint’ declared here 631 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:635:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:631:20: note: ‘constraint’ declared here 631 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:646:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:642:20: note: ‘constraint’ declared here 642 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:646:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:642:20: note: ‘constraint’ declared here 642 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:657:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:653:20: note: ‘constraint’ declared here 653 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:657:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:653:20: note: ‘constraint’ declared here 653 | OBFFConstraint constraint; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBForceField::FastRotorSearch(bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1433:29: warning: ‘minj’ may be used uninitialized [-Wmaybe-uninitialized] 1433 | rotorKey[idx + 1] = minj; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1359:21: note: ‘minj’ was declared here 1359 | unsigned int j, minj; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1450:11: warning: ‘minE’ may be used uninitialized [-Wmaybe-uninitialized] 1450 | if (minE < best_minE) { | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1360:22: note: ‘minE’ was declared here 1360 | double currentE, minE, best_minE; | ^~~~ [37/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obconversion.cpp.o -MF src/CMakeFiles/openbabel.dir/obconversion.cpp.o.d -o src/CMakeFiles/openbabel.dir/obconversion.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obconversion.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstream.h:333, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obconversion.cpp:54: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstreamimpl.h: In instantiation of ‘bool zlib_stream::basic_zip_streambuf::zip_to_stream(char_type*, std::streamsize) [with charT = char; traits = std::char_traits; char_type = char; std::streamsize = long int]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstreamimpl.h:126:9: required from ‘zlib_stream::basic_zip_streambuf::int_type zlib_stream::basic_zip_streambuf::overflow(int_type) [with charT = char; traits = std::char_traits; int_type = int]’ 126 | if (zip_to_stream(this->pbase(), w)) | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstreamimpl.h:118:1: required from here 118 | basic_zip_streambuf::overflow(int_type c) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstreamimpl.h:242:44: warning: variable ‘total_written_byte_size’ set but not used [-Wunused-but-set-variable=] 242 | std::streamsize written_byte_size = 0, total_written_byte_size = 0; | ^~~~~~~~~~~~~~~~~~~~~~~ [38/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/oberror.cpp.o -MF src/CMakeFiles/openbabel.dir/oberror.cpp.o.d -o src/CMakeFiles/openbabel.dir/oberror.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/oberror.cpp [39/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obfunctions.cpp.o -MF src/CMakeFiles/openbabel.dir/obfunctions.cpp.o.d -o src/CMakeFiles/openbabel.dir/obfunctions.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obfunctions.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obfunctions.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obfunctions.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [40/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obutil.cpp.o -MF src/CMakeFiles/openbabel.dir/obutil.cpp.o.d -o src/CMakeFiles/openbabel.dir/obutil.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obutil.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obutil.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [41/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/op.cpp.o -MF src/CMakeFiles/openbabel.dir/op.cpp.o.d -o src/CMakeFiles/openbabel.dir/op.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/op.cpp [42/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mol.cpp.o -MF src/CMakeFiles/openbabel.dir/mol.cpp.o.d -o src/CMakeFiles/openbabel.dir/mol.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp: In member function ‘unsigned int OpenBabel::OBMol::NumHvyAtoms() const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:811:36: warning: unnecessary parentheses in declaration of ‘i’ [-Wparentheses] 811 | vector::const_iterator(i); | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:811:36: note: remove parentheses 811 | vector::const_iterator(i); | ^~~ | - - /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp: In member function ‘unsigned int OpenBabel::OBMol::GetTotalSpinMultiplicity()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:1229:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1229 | if (chg % 2 != unpaired_electrons %2) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp: In member function ‘bool OpenBabel::OBMol::ConvertZeroBonds()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:3935:31: warning: unused variable ‘b’ [-Wunused-variable] 3935 | FOR_BONDS_OF_ATOM(b, bgn) { bcount += 1; } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:420:45: note: in definition of macro ‘FOR_BONDS_OF_ATOM’ 420 | #define FOR_BONDS_OF_ATOM(b,p) for (auto b : impl::AtomGetBonds(p)) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:3937:31: warning: unused variable ‘b’ [-Wunused-variable] 3937 | FOR_BONDS_OF_ATOM(b, end) { ecount += 1; } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:420:45: note: in definition of macro ‘FOR_BONDS_OF_ATOM’ 420 | #define FOR_BONDS_OF_ATOM(b,p) for (auto b : impl::AtomGetBonds(p)) | ^ [43/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obiter.cpp.o -MF src/CMakeFiles/openbabel.dir/obiter.cpp.o.d -o src/CMakeFiles/openbabel.dir/obiter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h: In constructor ‘OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:378:12: warning: ‘OpenBabel::OBMolRingIter::_parent’ will be initialized after [-Wreorder] 378 | OBMol *_parent; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:377:13: warning: ‘OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr’ [-Wreorder] 377 | OBRing *_ptr; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:1022:3: warning: when initialized here [-Wreorder] 1022 | OBMolRingIter::OBMolRingIter(OBMol *mol): _parent(mol), _ptr(nullptr) | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h: In constructor ‘OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:378:12: warning: ‘OpenBabel::OBMolRingIter::_parent’ will be initialized after [-Wreorder] 378 | OBMol *_parent; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:377:13: warning: ‘OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr’ [-Wreorder] 377 | OBRing *_ptr; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:1032:3: warning: when initialized here [-Wreorder] 1032 | OBMolRingIter::OBMolRingIter(OBMol &mol): _parent(&mol), _ptr(nullptr) | ^~~~~~~~~~~~~ [44/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/patty.cpp.o -MF src/CMakeFiles/openbabel.dir/patty.cpp.o.d -o src/CMakeFiles/openbabel.dir/patty.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/patty.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/patty.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/patty.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [45/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/phmodel.cpp.o -MF src/CMakeFiles/openbabel.dir/phmodel.cpp.o.d -o src/CMakeFiles/openbabel.dir/phmodel.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/phmodel.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/phmodel.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/phmodel.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [46/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/plugin.cpp.o -MF src/CMakeFiles/openbabel.dir/plugin.cpp.o.d -o src/CMakeFiles/openbabel.dir/plugin.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/plugin.cpp [47/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/parsmart.cpp.o -MF src/CMakeFiles/openbabel.dir/parsmart.cpp.o.d -o src/CMakeFiles/openbabel.dir/parsmart.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp: In member function ‘bool OpenBabel::OBSmartsPattern::Init(const char*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1775:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1775 | if (strlen(buffer) > MaxSmartsLength) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1778:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1778 | delete[] _buffer; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp: In destructor ‘virtual OpenBabel::OBSmartsPattern::~OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1807:37: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 1807 | OBSmartsPattern::~OBSmartsPattern() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1807:37: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 1807 | OBSmartsPattern::~OBSmartsPattern() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [48/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/query.cpp.o -MF src/CMakeFiles/openbabel.dir/query.cpp.o.d -o src/CMakeFiles/openbabel.dir/query.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/query.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/query.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/query.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [49/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rand.cpp.o -MF src/CMakeFiles/openbabel.dir/rand.cpp.o.d -o src/CMakeFiles/openbabel.dir/rand.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.cpp:429:15: warning: ‘void OpenBabel::GenerateSequence(unsigned int, unsigned int, unsigned int, unsigned int)’ defined but not used [-Wunused-function] 429 | static void GenerateSequence( unsigned int p, unsigned int m, | ^~~~~~~~~~~~~~~~ [50/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/pointgroup.cpp.o -MF src/CMakeFiles/openbabel.dir/pointgroup.cpp.o.d -o src/CMakeFiles/openbabel.dir/pointgroup.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘int OpenBabel::PointGroupPrivate::establish_pairs(SYMMETRY_ELEMENT*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:267:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 267 | if( elem->transform[i] >= _mol->NumAtoms() ){ /* No symmetric atom yet */ | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘int OpenBabel::PointGroupPrivate::check_transform_order(SYMMETRY_ELEMENT*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:311:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 311 | if( elem->transform[i] == i ) /* Identity transform is Ok for any order */ | ~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:315:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 315 | if( elem->transform[j] == i ) | ~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘int OpenBabel::PointGroupPrivate::same_transform(SYMMETRY_ELEMENT*, SYMMETRY_ELEMENT*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:358:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 358 | if( b->transform[j] != i ) | ~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘OpenBabel::OBPointGroup::Symbol OpenBabel::OBPointGroup::IdentifyPointGroupSymbol(double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:1958:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1958 | || d->NormalAxesCounts[2] >= maxAxis) { // Are there the perpendicular C2 axes? | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:1961:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1961 | if (d->PlanesCount >= maxAxis + 1) { // Likely Dnh | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:1986:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1986 | else if (d->PlanesCount == maxAxis) { // Likely Dnd | ~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2088:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2088 | else if (d->PlanesCount >= maxAxis) { // Cnv | ~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘void OpenBabel::OBPointGroup::Symmetrize(OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2175:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2175 | for (unsigned int i = 0; i < d->PlanesCount; i++) | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2182:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2182 | for (unsigned int i = 0; i < d->NormalAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2189:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2189 | for (unsigned int i = 0; i < d->ImproperAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~~~ [51/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o -MF src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o.d -o src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp: In member function ‘void OpenBabel::OBReactionFacadePrivate::FindComponents()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp:122:15: warning: unused variable ‘atm’ [-Wunused-variable] 122 | OBAtom* atm = &*atom; | ^~~ [52/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -MF src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o.d -o src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:425:5: warning: multi-line comment [-Wcomment] 425 | // / \ | ^ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘bool OpenBabel::TSimpleMolecule::threeBondResolve(int, int, double&, double&, OpenBabel::neighbourlist*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:970:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 970 | for (i=0; i&, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:1473:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1473 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1480 | } while (k&, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2022:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2022 | for (j=0; j0) atDef=atDef+1; | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2032:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2032 | if (cN>=0) if (maxAtDef==atomCycle[cN].size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2047:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2047 | for (j=1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2053 | for (j=0;currNumDef < atomClean && j&, std::vector, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2120:98: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2120 | if (baseCycle>0) for (i=0; i, std::vector, int, int&, int, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2251:67: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2251 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2253 | for (k=0; k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2277 | for (j=1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2588 | if ((nb + i) > dsATN.size()) nb=dsATN.size()-i; // Check added to avoid segfault below, see issue #1851 | ~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TSimpleMolecule::flipSmall(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2998:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2998 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3037 | for (i=0; i, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3116 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3116:75: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3116 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3118:26: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3118 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3118:75: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3118 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘bool OpenBabel::compareAtoms(int, int, std::vector*>)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3140:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3140 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3140:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3140 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TSimpleMolecule::makeEquivalentList(std::vector&, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3306:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3306 | for (j=0; jsize(); j++) (*lL)[i]=0; | ~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3314:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3314 | for (i=0; i*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3324 | for (int i=0; i&, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3340:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const __gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘const int’} [-Wsign-compare] 3340 | if (l <= maxValues[i]) { /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘int OpenBabel::TSimpleMolecule::correctOverlapped()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3389:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3389 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3442 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3452 | for (i=0; i*, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3555:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 3555 | for (i=0; isize(); i++) if (i != index) { | ~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4231:19: warning: variable ‘nBondsOld’ set but not used [-Wunused-but-set-variable=] 4231 | int nAtomsOld,nBondsOld,naDef1,naDef,i; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4232:10: warning: variable ‘test’ set but not used [-Wunused-but-set-variable=] 4232 | bool test,test1,test2; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4232:15: warning: variable ‘test1’ set but not used [-Wunused-but-set-variable=] 4232 | bool test,test1,test2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4232:21: warning: variable ‘test2’ set but not used [-Wunused-but-set-variable=] 4232 | bool test,test1,test2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4234:40: warning: variable ‘xCenter’ set but not used [-Wunused-but-set-variable=] 4234 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4234:48: warning: variable ‘yCenter’ set but not used [-Wunused-but-set-variable=] 4234 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘OpenBabel::TEditedMolecule* OpenBabel::TEditedMolecule::extractFragment(int, std::vector*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4425:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4425 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4425:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4425 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4430:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4430 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4433 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4606 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4611 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4616 | for (i=0; i*, std::vector*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4651:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 4651 | if (qEnumerator->size() != nAtoms()) qEnumerator->resize(nAtoms()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4652:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4652 | for (i=0; isize(); i++) (*qEnumerator)[i]=i; | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4681:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4681 | for (j=0; jsize(); j++) { | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘bool OpenBabel::TEditedMolecule::fragmentSearch(OpenBabel::TEditedMolecule*, std::vector*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4868:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4868 | if (molecule1->listarSize()>aSTested.size()) aSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4869:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4869 | if (molecule1->listarSize()>bSTested.size()) bSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4870:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4870 | if (molecule1->listarSize()>queryQHydr.size()) queryQHydr.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4871:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4871 | if (molecule1->listarSize()>queryAQTested.size()) queryAQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4872:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4872 | if (molecule1->listarSize()>queryBQTested.size()) queryBQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4873:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4873 | if (molecule1->listarSize()>queryCurrentAssignment.size()) queryCurrentAssignment.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4874:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4874 | if (this->listarSize()>queryAQTested.size()) queryAQTested.resize(this->listarSize()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5047:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 5047 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4855:9: warning: variable ‘cycleNumber’ set but not used [-Wunused-but-set-variable=] 4855 | int cycleNumber; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘bool OpenBabel::TemplateRedraw::internalBondsPresent(OpenBabel::TEditedMolecule*, OpenBabel::TSimpleMolecule*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5210:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 5210 | for (i=0; inAtoms(); i++) aList[mQuery->queryAQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5211:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 5211 | for (i=0; inBonds(); i++) bList[mQuery->queryBQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TemplateRedraw::rotateBondVertically(OpenBabel::TSimpleMolecule*, std::vector, int, double, double, double&, double&, double&, double&, double&, double&, int&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5241:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5241 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5286 | for (i=0; i*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5320:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5320 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5337:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5337 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5367 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5377 | for (i=0; i*, OpenBabel::PartFragmentDefinition&, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5408:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5408 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5421:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5421 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5437:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5437 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘int OpenBabel::TemplateRedraw::coordinatesPrepare(OpenBabel::TEditedMolecule&, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5676:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5676 | for (i=kk; ifragmentSearch(&sm,nullptr)) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5724:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5724 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5727 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5735 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5807 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5837 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5903 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5915 | for (frCount=0; frCount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5931 | for (frCount=0; frCount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5954 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5969 | for (frCount=0; frCount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6009 | for (i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6016 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6035 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6043 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6044 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6045 | for (i=0; i::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 6367 | if (result == string::npos) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6368:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6368 | if (result >= instring.length()) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘std::string OpenBabel::getAtomMCDL(OBMol*, int, std::vector, std::vector, std::vector, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6555:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6555 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6600 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6602:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6602 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) n++; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6608:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6608 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) { | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6618:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6618 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-1; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6621:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6621 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-2; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6632:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6632 | if (k == 1) for (i=0; i >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6641 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6641 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6651 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘std::string OpenBabel::getBondMCDL(OBMol*, int, int, std::vector, std::vector, int (*)[4], std::vector, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6852:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6852 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6854:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6854 | for (j=i+1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6859 | for (j=i+1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6873 | for (j=i+1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6881 | for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6886 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6886 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6896 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6689:26: warning: variable ‘n4’ set but not used [-Wunused-but-set-variable=] 6689 | int i,j,n,m,n1,n2,n3,n4,an1,an2,an3,an4,k; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘void OpenBabel::implementAtomStereo(std::vector&, std::vector&, std::vector&, std::vector, std::vector, int, int, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6969:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6969 | if (n1 < (astereo.length()-1)) astereo=astereo.substr(n1+1); else astereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘void OpenBabel::implementBondStereo(std::vector, std::vector, std::vector&, std::vector&, int, int, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7033:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7033 | if (n1 < (bstereo.length()-1)) bstereo=bstereo.substr(n1+1); else bstereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘int OpenBabel::groupRedraw(OBMol*, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7168:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7168 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7176 | for (int i=0; i&, int&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7218 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7221:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7221 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7242:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7242 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7245:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7245 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4348:16: warning: ‘r1’ may be used uninitialized [-Wmaybe-uninitialized] 4348 | xNew=r1*scale*xu1+this->getAtom(thisAN)->rx; | ~~^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4235:12: note: ‘r1’ was declared here 4235 | double r1; | ^~ [53/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/residue.cpp.o -MF src/CMakeFiles/openbabel.dir/residue.cpp.o.d -o src/CMakeFiles/openbabel.dir/residue.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/residue.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/residue.cpp:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [54/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/ring.cpp.o -MF src/CMakeFiles/openbabel.dir/ring.cpp.o.d -o src/CMakeFiles/openbabel.dir/ring.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp: In constructor ‘OpenBabel::OBRingSearch::OBRingSearch()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:484:62: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 484 | OBRingSearch::OBRingSearch() : _d(new OBRingSearchPrivate()) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:484:62: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 484 | OBRingSearch::OBRingSearch() : _d(new OBRingSearchPrivate()) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:484:62: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 484 | OBRingSearch::OBRingSearch() : _d(new OBRingSearchPrivate()) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp: In destructor ‘OpenBabel::OBRingSearch::~OBRingSearch()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:521:31: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 521 | OBRingSearch::~OBRingSearch() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:521:31: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 521 | OBRingSearch::~OBRingSearch() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ [55/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotamer.cpp.o -MF src/CMakeFiles/openbabel.dir/rotamer.cpp.o.d -o src/CMakeFiles/openbabel.dir/rotamer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp: In member function ‘void OpenBabel::OBRotamerList::AddRotamer(std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:410:11: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 410 | while (angle < 0.0) | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:412:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 412 | while (angle > 360.0) | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp: In member function ‘bool OpenBabel::OBRotamerList::SetCurrentCoordinates(OpenBabel::OBMol&, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:543:11: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 543 | while (angle < 0.0) | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:545:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 545 | while (angle > 360.0) | ^~~~~ [56/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/spectrophore.cpp.o -MF src/CMakeFiles/openbabel.dir/spectrophore.cpp.o.d -o src/CMakeFiles/openbabel.dir/spectrophore.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/spectrophore.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/spectrophore.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [57/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tokenst.cpp.o -MF src/CMakeFiles/openbabel.dir/tokenst.cpp.o.d -o src/CMakeFiles/openbabel.dir/tokenst.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tokenst.cpp [58/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotor.cpp.o -MF src/CMakeFiles/openbabel.dir/rotor.cpp.o.d -o src/CMakeFiles/openbabel.dir/rotor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp: In member function ‘bool OpenBabel::OBRotorList::SetEvalAtoms(OpenBabel::OBMol&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:335:28: warning: ‘void OpenBabel::OBRotor::SetEvalAtoms(OpenBabel::OBBitVec&)’ is deprecated [-Wdeprecated-declarations] 335 | rotor->SetEvalAtoms(eval); | ~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:435:10: note: declared here 435 | void SetEvalAtoms(OBBitVec &bv) { _evalatoms = bv; } | ^~~~~~~~~~~~ [59/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tautomer.cpp.o -MF src/CMakeFiles/openbabel.dir/tautomer.cpp.o.d -o src/CMakeFiles/openbabel.dir/tautomer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp: In member function ‘bool OpenBabel::TautomerImpl::IsPropagationValid(OpenBabel::OBMol*, const std::vector&, const std::vector&, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp:407:13: warning: variable ‘numSingleBond’ set but not used [-Wunused-but-set-variable=] 407 | int numSingleBond = 0, numDoubleBond = 0, numUnassigned = 0; | ^~~~~~~~~~~~~ [60/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/transform.cpp.o -MF src/CMakeFiles/openbabel.dir/transform.cpp.o.d -o src/CMakeFiles/openbabel.dir/transform.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/transform.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/transform.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/transform.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [61/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/typer.cpp.o -MF src/CMakeFiles/openbabel.dir/typer.cpp.o.d -o src/CMakeFiles/openbabel.dir/typer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/typer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/typer.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/typer.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [62/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -MF src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o.d -o src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obmolecformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obmolecformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:277:28: warning: ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’ was hidden [-Woverloaded-virtual=] 277 | virtual const char *GetTitle(bool /*replaceNewlines*/ = true) const { return ""; } | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obmolecformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:99:15: note: by ‘std::string OpenBabel::OBReaction::GetTitle() const’ 99 | std::string GetTitle() const { return _title; } | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:278:21: warning: ‘virtual void OpenBabel::OBBase::SetTitle(const char*)’ was hidden [-Woverloaded-virtual=] 278 | virtual void SetTitle(const char *) {} | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:101:8: note: by ‘void OpenBabel::OBReaction::SetTitle(const std::string&)’ 101 | void SetTitle(const std::string& title) { _title=title; } | ^~~~~~~~ [63/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -MF src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o.d -o src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/dlhandler_unix.cpp [64/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/confsearch.cpp.o -MF src/CMakeFiles/openbabel.dir/confsearch.cpp.o.d -o src/CMakeFiles/openbabel.dir/confsearch.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotamer.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp: In member function ‘bool OpenBabel::OBDiversePoses::AddPose(std::vector, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:189:14: warning: unused variable ‘min_rmsd’ [-Wunused-variable] 189 | double min_rmsd = DBL_MAX; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp: In member function ‘int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:361:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 361 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ [65/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -MF src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o.d -o src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h: In constructor ‘OpenBabel::SVGPainter::SVGPainter(std::ostream&, std::set >*, bool, double, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:77:11: warning: ‘OpenBabel::SVGPainter::m_fontPointSize’ will be initialized after [-Wreorder] 77 | int m_fontPointSize; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:75:12: warning: ‘bool OpenBabel::SVGPainter::m_isFillcolor’ [-Wreorder] 75 | bool m_isFillcolor; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:75:12: warning: ‘OpenBabel::SVGPainter::m_isFillcolor’ will be initialized after [-Wreorder] 75 | bool m_isFillcolor; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:74:32: warning: ‘std::set >* OpenBabel::SVGPainter::m_Gradients’ [-Wreorder] 74 | std::set *m_Gradients; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ [66/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -MF src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/matrix3x3.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/matrix3x3.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [67/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -MF src/CMakeFiles/openbabel.dir/conformersearch.cpp.o.d -o src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/conformersearch.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotamer.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/conformersearch.h:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:250:12: warning: unused variable ‘score’ [-Wunused-variable] 250 | double score = ff->Energy(false); // no gradients | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘bool OpenBabel::OBConformerSearch::Setup(const OpenBabel::OBMol&, int, int, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:352:23: warning: variable ‘end_it’ set but not used [-Wunused-but-set-variable=] 352 | OBRotorIterator end_it = m_rotorList.EndRotors(); | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::local_opt()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:812:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 812 | for (i = 1; i <= m_rotorList.Size(); ++i, rotor = m_rotorList.NextRotor(ri)) | ~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::reproduce(OpenBabel::RotorKey&, OpenBabel::RotorKey&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:877:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 877 | if (iniche > -1) | ~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::share_fitness()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1042:37: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1042 | if ((dynamic_niches.size () < nb_niches) && (dynamic_niches.size () %2)) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1057:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1057 | if (dist < min_dist ) | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1070:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1070 | if (imax == -1) | ~~~~~^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1087:40: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1087 | if (dynamic_niches.size () < nb_niches) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1013:10: warning: unused variable ‘flag_niched’ [-Wunused-variable] 1013 | bool flag_niched = false; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘double OpenBabel::OBConformerSearch::sharing_generation()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1176 | while (ninsert < ((half_pop * 2) / 3)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1185:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1185 | if (iround < imax) | ~~~~~~~^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1193:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1193 | if (ninsert >= half_pop) | ~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1218:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1218 | while (ninsert < half_pop) | ~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1142:23: warning: unused variable ‘lowest’ [-Wunused-variable] 1142 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1142:37: warning: unused variable ‘highest’ [-Wunused-variable] 1142 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:25: In member function ‘OpenBabel::OBRandomMT::OBRandomMT()’, inlined from ‘OpenBabel::OBConformerSearch::NextGeneration()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:473:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:112:43: warning: ‘generator’ may be used uninitialized [-Wmaybe-uninitialized] 112 | OBRandomMT() : OBRandomMT{randomSeed()} {} | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h: In member function ‘OpenBabel::OBConformerSearch::NextGeneration()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:157:19: note: by argument 1 of type ‘const struct OBRandomMT *’ to ‘OpenBabel::OBRandomMT::randomSeed() const’ declared here 157 | uint_fast64_t randomSeed() const; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:473:16: note: ‘generator’ declared here 473 | OBRandomMT generator{}; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘OpenBabel::OBConformerSearch::MakeSelection()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:568:31: warning: ‘highest’ may be used uninitialized [-Wmaybe-uninitialized] 568 | double sum = 0.0, lowest, highest; | ^~~~~~~ [68/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o -MF src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/transform3d.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/transform3d.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [69/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -MF src/CMakeFiles/openbabel.dir/depict/depict.cpp.o.d -o src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In function ‘unsigned int OpenBabel::GetAtomSymClass(OBAtom*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:284:11: warning: unused variable ‘nclasses’ [-Wunused-variable] 284 | int nclasses = end_pos - copy_sym.begin(); | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In member function ‘virtual void OpenBabel::OBDepictPrivate::DrawAtomLabel(const std::string&, int, const OpenBabel::vector3&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1028:21: warning: variable ‘metrics’ set but not used [-Wunused-but-set-variable=] 1028 | OBFontMetrics metrics = painter->GetFontMetrics(str); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1033:21: warning: variable ‘metrics’ set but not used [-Wunused-but-set-variable=] 1033 | OBFontMetrics metrics = painter->GetFontMetrics(subscript); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In member function ‘void OpenBabel::OBDepictPrivateBallAndStick::DrawAromaticRingBond(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, const OpenBabel::vector3&, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1242:99: warning: expression does not compute the number of elements in this array; element type is ‘const float’, not ‘double’ [-Wsizeof-array-div] 1242 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1242:100: note: add parentheses around ‘sizeof (double)’ to silence this warning 1242 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ^~~~~~~~~~~~~~ | ( ) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1241:24: note: array ‘dashpattern’ declared here 1241 | static const float dashpattern[] = {5., 5.}; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In member function ‘OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:461:22: warning: ‘min_x’ may be used uninitialized [-Wmaybe-uninitialized] 461 | width = max_x - min_x + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:434:14: note: ‘min_x’ was declared here 434 | double min_x, max_x; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:461:22: warning: ‘max_x’ may be used uninitialized [-Wmaybe-uninitialized] 461 | width = max_x - min_x + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:434:21: note: ‘max_x’ was declared here 434 | double min_x, max_x; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:462:22: warning: ‘min_y’ may be used uninitialized [-Wmaybe-uninitialized] 462 | height = max_y - min_y + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:435:14: note: ‘min_y’ was declared here 435 | double min_y, max_y; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:462:22: warning: ‘max_y’ may be used uninitialized [-Wmaybe-uninitialized] 462 | height = max_y - min_y + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:435:21: note: ‘max_y’ was declared here 435 | double min_y, max_y; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:464:25: warning: ‘min_z’ may be used uninitialized [-Wmaybe-uninitialized] 464 | d->zScale = max_z - min_z; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:436:14: note: ‘min_z’ was declared here 436 | double min_z, max_z; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:464:25: warning: ‘max_z’ may be used uninitialized [-Wmaybe-uninitialized] 464 | d->zScale = max_z - min_z; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:436:21: note: ‘max_z’ was declared here 436 | double min_z, max_z; | ^~~~~ [70/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/vector3.cpp.o -MF src/CMakeFiles/openbabel.dir/math/vector3.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/vector3.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/vector3.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/vector3.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [71/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/stereo.cpp [72/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/tetranonplanar.cpp [73/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -MF src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/spacegroup.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/spacegroup.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [74/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/tetraplanar.cpp [75/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/squareplanar.cpp [76/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/cistrans.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/cistrans.cpp:3: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [77/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/tetrahedral.cpp [78/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/facade.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/facade.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [79/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/gen3dstereohelper.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/gen3dstereohelper.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [80/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/cansmidescriptor.cpp [81/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/cmpdfilter.cpp [82/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/groupcontrib.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/groupcontrib.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/groupcontrib.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [83/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/align.cpp.o -MF src/CMakeFiles/openbabel.dir/math/align.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/align.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/align.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/align.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/align.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [84/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/filters.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/filters.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [85/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/inchidescriptor.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/inchidescriptor.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h: In member function ‘bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ [86/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/smartsdescriptors.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/smartsdescriptors.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [87/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp: In function ‘bool OpenBabel::TetStereoToWedgeHash(OBMol&, std::map&, std::map&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:2795:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2795 | for (std::vector::iterator data = vdata.begin(); data != vdata.end(); ++data) | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:2951:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2951 | return true; | ^~~~~~ [88/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/fingerecfp.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/fingerecfp.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [89/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger2.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger2.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [90/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp: In member function ‘virtual bool OpenBabel::PatternFP::GetFingerprint(OpenBabel::OBBase*, std::vector&, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp:109:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 109 | while(n < _bitcount) | ~~^~~~~~~~~~~ [91/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/distgeom.cpp.o -MF src/CMakeFiles/openbabel.dir/distgeom.cpp.o.d -o src/CMakeFiles/openbabel.dir/distgeom.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:55: warning: ignoring ‘#pragma warning ’ [-Wunknown-pragmas] 55 | #pragma warning(disable : 4244) // warning C4244: '=' : conversion from 'double' to 'float', possible loss of data /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:56: warning: ignoring ‘#pragma warning ’ [-Wunknown-pragmas] 56 | #pragma warning(disable : 4305) // warning C4305: '*=' : truncation from 'double' to 'float' /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:642:3: warning: multi-line comment [-Wcomment] 642 | // \ | ^ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp: In member function ‘void OpenBabel::OBDistanceGeometry::SetAromaticRingBounds()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:458:14: warning: variable ‘angle’ set but not used [-Wunused-but-set-variable=] 458 | double angle = 180.0 - (360.0 / size); | ^~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:31: In member function ‘OpenBabel::OBRandomMT::OBRandomMT()’, inlined from ‘OpenBabel::OBDistanceGeometry::generateInitialCoords()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:1059:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:112:43: warning: ‘generator’ may be used uninitialized [-Wmaybe-uninitialized] 112 | OBRandomMT() : OBRandomMT{randomSeed()} {} | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h: In member function ‘OpenBabel::OBDistanceGeometry::generateInitialCoords()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:157:19: note: by argument 1 of type ‘const struct OBRandomMT *’ to ‘OpenBabel::OBRandomMT::randomSeed() const’ declared here 157 | uint_fast64_t randomSeed() const; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:1059:16: note: ‘generator’ declared here 1059 | OBRandomMT generator{}; | ^~~~~~~~~ [92/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:478:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:478:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:493:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:493:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:546:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:546:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:546:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:562:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:562:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:562:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:632:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:632:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:632:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&torsioncalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:632:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16: warning: ‘MEM[(const struct OBFFCalculation4 &)&torsioncalc].force_d’ may be used uninitialized [-Wmaybe-uninitialized] 199 | class OBFPRT OBFFCalculation4: public OBFFCalculation3 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:683:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:683:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:683:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&torsioncalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:683:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16: warning: ‘MEM[(const struct OBFFCalculation4 &)&torsioncalc].force_d’ may be used uninitialized [-Wmaybe-uninitialized] 199 | class OBFPRT OBFFCalculation4: public OBFFCalculation3 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ was declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9: warning: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 104B]’ may be used uninitialized [-Wmaybe-uninitialized] 56 | class OBFFVDWCalculationGhemical : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 104B]’ was declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9: warning: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 105B]’ may be used uninitialized [-Wmaybe-uninitialized] 56 | class OBFFVDWCalculationGhemical : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 105B]’ was declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9: warning: ‘MEM[(const struct OBFFVDWCalculationGhemical &)&vdwcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 56 | class OBFFVDWCalculationGhemical : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘MEM[(const struct OBFFVDWCalculationGhemical &)&vdwcalc].rab’ was declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘elecalc’ declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘elecalc’ declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9: warning: ‘MEM[(const struct OBFFElectrostaticCalculationGhemical &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 71 | class OBFFElectrostaticCalculationGhemical : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘MEM[(const struct OBFFElectrostaticCalculationGhemical &)&elecalc].rab’ was declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘elecalc’ declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘elecalc’ declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ [93/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:29: In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:573:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:573:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:588:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:588:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:638:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:638:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:638:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:654:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:654:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:654:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:708:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:708:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:708:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&torsioncalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:708:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16: warning: ‘MEM[(const struct OBFFCalculation4 &)&torsioncalc].force_d’ may be used uninitialized [-Wmaybe-uninitialized] 199 | class OBFPRT OBFFCalculation4: public OBFFCalculation3 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:725:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:725:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:725:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&torsioncalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:725:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16: warning: ‘MEM[(const struct OBFFCalculation4 &)&torsioncalc].force_d’ may be used uninitialized [-Wmaybe-uninitialized] 199 | class OBFPRT OBFFCalculation4: public OBFFCalculation3 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9: warning: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 104B]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | class OBFFVDWCalculationGaff : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 104B]’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9: warning: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 105B]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | class OBFFVDWCalculationGaff : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 105B]’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9: warning: ‘MEM[(const struct OBFFVDWCalculationGaff &)&vdwcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 63 | class OBFFVDWCalculationGaff : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM[(const struct OBFFVDWCalculationGaff &)&vdwcalc].rab’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGaff::OBFFElectrostaticCalculationGaff(OpenBabel::OBFFElectrostaticCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:72:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGaff*, OpenBabel::OBFFElectrostaticCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGaff*, OpenBabel::OBFFElectrostaticCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1055:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1013:38: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 1013 | OBFFElectrostaticCalculationGaff elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFElectrostaticCalculationGaff::OBFFElectrostaticCalculationGaff(OpenBabel::OBFFElectrostaticCalculationGaff const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGaff*, OpenBabel::OBFFElectrostaticCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGaff*, OpenBabel::OBFFElectrostaticCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1055:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:72:9: warning: ‘MEM[(const struct OBFFElectrostaticCalculationGaff &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 72 | class OBFFElectrostaticCalculationGaff : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1013:38: note: ‘MEM[(const struct OBFFElectrostaticCalculationGaff &)&elecalc].rab’ was declared here 1013 | OBFFElectrostaticCalculationGaff elecalc; | ^~~~~~~ [94/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe 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-I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addinindex.cpp [96/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addpolarh.cpp [97/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addnonpolarh.cpp [98/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2798:32: warning: variable ‘bondtype1’ set but not used [-Wunused-but-set-variable=] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2798:43: warning: variable ‘bondtype2’ set but not used [-Wunused-but-set-variable=] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:289:40: required from here 289 | return gradients ? E_Bond() : E_Bond(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | for (int i = 0; i < _bondcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:289:58: required from here 289 | return gradients ? E_Bond() : E_Bond(); | ~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | for (int i = 0; i < _bondcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:295:41: required from here 295 | return gradients ? E_Angle() : E_Angle(); | ~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 263 | for (int i = 0; i < _anglecalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:295:60: required from here 295 | return gradients ? E_Angle() : E_Angle(); | ~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 263 | for (int i = 0; i < _anglecalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:301:42: required from here 301 | return gradients ? E_StrBnd() : E_StrBnd(); | ~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 376 | for (int i = 0; i < _strbndcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:301:62: required from here 301 | return gradients ? E_StrBnd() : E_StrBnd(); | ~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 376 | for (int i = 0; i < _strbndcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:307:43: required from here 307 | return gradients ? E_Torsion() : E_Torsion(); | ~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 512 | for (int i = 0; i < _torsioncalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:307:64: required from here 307 | return gradients ? E_Torsion() : E_Torsion(); | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 512 | for (int i = 0; i < _torsioncalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:313:39: required from here 313 | return gradients ? E_OOP() : E_OOP(); | ~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 610 | for (int i = 0; i < _oopcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:313:56: required from here 313 | return gradients ? E_OOP() : E_OOP(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 610 | for (int i = 0; i < _oopcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:319:39: required from here 319 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 707 | for (int i = 0; i < _vdwcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:319:56: required from here 319 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 707 | for (int i = 0; i < _vdwcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:325:49: required from here 325 | return gradients ? E_Electrostatic() : E_Electrostatic(); | ~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 793 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:325:76: required from here 325 | return gradients ? E_Electrostatic() : E_Electrostatic(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 793 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::PerceiveAromatic()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1451:30: warning: ‘index’ may be used uninitialized [-Wmaybe-uninitialized] 1451 | ringbond = _mol.GetBond(first_rj, index); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1388:12: note: ‘index’ was declared here 1388 | int n, index, ringsize, first_rj, prev_rj, pi_electrons, c60; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1451:30: warning: ‘first_rj’ may be used uninitialized [-Wmaybe-uninitialized] 1451 | ringbond = _mol.GetBond(first_rj, index); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1388:29: note: ‘first_rj’ was declared here 1388 | int n, index, ringsize, first_rj, prev_rj, pi_electrons, c60; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:44: In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2765:38: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2765:38: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2775:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2775:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ was declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9: warning: ‘MEM[(const struct OBFFAngleCalculationMMFF94 &)&anglecalc].theta’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘MEM[(const struct OBFFAngleCalculationMMFF94 &)&anglecalc].theta’ was declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9: warning: ‘MEM[(const struct OBFFAngleCalculationMMFF94 &)&anglecalc].delta’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘MEM[(const struct OBFFAngleCalculationMMFF94 &)&anglecalc].delta’ was declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].energy’ was declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&strbndcalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_theta’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_theta’ was declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_rab’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_rab’ was declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_rbc’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_rbc’ was declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].theta’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].theta’ was declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].rab’ was declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].rbc’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].rbc’ was declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_ab_a’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_ab_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_bc_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_bc_c’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_abc_a’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_abc_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_abc_c’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationMMFF94::OBFFTorsionCalculationMMFF94(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:61:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3357:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3096:34: note: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].energy’ was declared here 3096 | OBFFTorsionCalculationMMFF94 torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFTorsionCalculationMMFF94::OBFFTorsionCalculationMMFF94(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3357:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:61:9: warning: ‘MEM[(const struct OBFFTorsionCalculationMMFF94 &)&torsioncalc].tor’ may be used uninitialized [-Wmaybe-uninitialized] 61 | class OBFFTorsionCalculationMMFF94 : public OBFFCalculation4 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3096:34: note: ‘MEM[(const struct OBFFTorsionCalculationMMFF94 &)&torsioncalc].tor’ was declared here 3096 | OBFFTorsionCalculationMMFF94 torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFTorsionCalculationMMFF94::OBFFTorsionCalculationMMFF94(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3357:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:61:9: warning: ‘MEM[(const struct OBFFTorsionCalculationMMFF94 &)&torsioncalc].cosine’ may be used uninitialized [-Wmaybe-uninitialized] 61 | class OBFFTorsionCalculationMMFF94 : public OBFFCalculation4 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3096:34: note: ‘MEM[(const struct OBFFTorsionCalculationMMFF94 &)&torsioncalc].cosine’ was declared here 3096 | OBFFTorsionCalculationMMFF94 torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationMMFF94::OBFFVDWCalculationMMFF94(OpenBabel::OBFFVDWCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:78:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationMMFF94*, OpenBabel::OBFFVDWCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationMMFF94*, OpenBabel::OBFFVDWCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3616:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3492:30: note: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ was declared here 3492 | OBFFVDWCalculationMMFF94 vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationMMFF94::OBFFVDWCalculationMMFF94(OpenBabel::OBFFVDWCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationMMFF94*, OpenBabel::OBFFVDWCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationMMFF94*, OpenBabel::OBFFVDWCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3616:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:78:9: warning: ‘MEM[(const struct OBFFVDWCalculationMMFF94 &)&vdwcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 78 | class OBFFVDWCalculationMMFF94 : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3492:30: note: ‘MEM[(const struct OBFFVDWCalculationMMFF94 &)&vdwcalc].rab’ was declared here 3492 | OBFFVDWCalculationMMFF94 vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationMMFF94::OBFFElectrostaticCalculationMMFF94(OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:89:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationMMFF94*, OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationMMFF94*, OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3678:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3625:40: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 3625 | OBFFElectrostaticCalculationMMFF94 elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFElectrostaticCalculationMMFF94::OBFFElectrostaticCalculationMMFF94(OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationMMFF94*, OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationMMFF94*, OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3678:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:89:9: warning: ‘MEM[(const struct OBFFElectrostaticCalculationMMFF94 &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 89 | class OBFFElectrostaticCalculationMMFF94 : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3625:40: note: ‘MEM[(const struct OBFFElectrostaticCalculationMMFF94 &)&elecalc].rab’ was declared here 3625 | OBFFElectrostaticCalculationMMFF94 elecalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4336:13: warning: ‘etot’ may be used uninitialized [-Wmaybe-uninitialized] 4336 | delta = (Energy() - etot); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:12: note: ‘etot’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:31: In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4308:15: /usr/include/bits/stdio2.h:68:35: warning: ‘ebond’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:18: note: ‘ebond’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4312:15: /usr/include/bits/stdio2.h:68:35: warning: ‘eangle’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:25: note: ‘eangle’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4320:15: /usr/include/bits/stdio2.h:68:35: warning: ‘eoop’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:33: note: ‘eoop’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4316:15: /usr/include/bits/stdio2.h:68:35: warning: ‘estbn’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:39: note: ‘estbn’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4324:15: /usr/include/bits/stdio2.h:68:35: warning: ‘etor’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:46: note: ‘etor’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4328:15: /usr/include/bits/stdio2.h:68:35: warning: ‘evdw’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:52: note: ‘evdw’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4332:15: /usr/include/bits/stdio2.h:68:35: warning: ‘eeq’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:58: note: ‘eeq’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~ [99/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/canonical.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/canonical.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [100/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/delpolarh.cpp [101/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp: In member function ‘virtual bool OpenBabel::OpChangeCell::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp:91:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 91 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 122 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ [102/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/delnonpolarh.cpp [103/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/gen2D.cpp [104/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘void OpenBabel::OBFFElectrostaticCalculationUFF::Compute()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:516:49: warning: ‘static double OpenBabel::OBForceField::VectorLengthDerivative(OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 516 | rab = OBForceField::VectorLengthDerivative(da, db); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1569:19: note: declared here 1569 | static double VectorLengthDerivative(vector3 &a, vector3 &b); | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In instantiation of ‘void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:479:37: required from ‘double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = true]’ 479 | i->template Compute(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:193:37: required from here 193 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:432:14: warning: unused variable ‘ab’ [-Wunused-variable] 432 | double ab[3]; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In instantiation of ‘void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:479:37: required from ‘double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = false]’ 479 | i->template Compute(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:193:54: required from here 193 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:432:14: warning: unused variable ‘ab’ [-Wunused-variable] 432 | double ab[3]; | ^~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9: warning: ‘MEM[(const struct OBFFElectrostaticCalculationUFF &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 82 | class OBFFElectrostaticCalculationUFF : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘MEM[(const struct OBFFElectrostaticCalculationUFF &)&elecalc].rab’ was declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].energy’ was declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9: warning: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 30 | class OBFFBondCalculationUFF : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].rab’ was declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9: warning: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].delta’ may be used uninitialized [-Wmaybe-uninitialized] 30 | class OBFFBondCalculationUFF : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].delta’ was declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].at’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].at’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘MEM [(struct OBFFAngleCalculationUFF *)&anglecalc + 156B]’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM [(struct OBFFAngleCalculationUFF *)&anglecalc + 156B]’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].theta’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].theta’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].delta’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].delta’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rij’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rij’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rjk’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rjk’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rik’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rik’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationUFF::OBFFTorsionCalculationUFF(OpenBabel::OBFFTorsionCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:53:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationUFF*, OpenBabel::OBFFTorsionCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationUFF*, OpenBabel::OBFFTorsionCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1341:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:748:31: note: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].energy’ was declared here 748 | OBFFTorsionCalculationUFF torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFTorsionCalculationUFF::OBFFTorsionCalculationUFF(OpenBabel::OBFFTorsionCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationUFF*, OpenBabel::OBFFTorsionCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationUFF*, OpenBabel::OBFFTorsionCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1341:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:53:9: warning: ‘MEM[(const struct OBFFTorsionCalculationUFF &)&torsioncalc].tor’ may be used uninitialized [-Wmaybe-uninitialized] 53 | class OBFFTorsionCalculationUFF : public OBFFCalculation4 | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:748:31: note: ‘MEM[(const struct OBFFTorsionCalculationUFF &)&torsioncalc].tor’ was declared here 748 | OBFFTorsionCalculationUFF torsioncalc; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1334:15: warning: ‘torsioncalc.V’ may be used uninitialized [-Wmaybe-uninitialized] 1334 | if (fabs(torsioncalc.V) < 2e-6) // don't bother calcuating this torsion | ~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:748:31: note: ‘torsioncalc.V’ was declared here 748 | OBFFTorsionCalculationUFF torsioncalc; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1339:48: warning: ‘torsioncalc.n’ may be used uninitialized [-Wmaybe-uninitialized] 1339 | torsioncalc.cosNPhi0 = cos(torsioncalc.n * DEG_TO_RAD * phi0); /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:748:31: note: ‘torsioncalc.n’ was declared here 748 | OBFFTorsionCalculationUFF torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘anglecalc.n’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘anglecalc.n’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ [105/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/fillUC.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/fillUC.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [106/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp: In member function ‘virtual bool OpenBabel::OpMinimize::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp:282:10: warning: unused variable ‘done’ [-Wunused-variable] 282 | bool done = true; | ^~~~ [107/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/gen3d.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/gen3d.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [108/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/largest.cpp [109/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/loader.cpp [110/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/neutralize.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/neutralize.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [111/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp: In member function ‘virtual bool OpenBabel::OpSplit::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp:95:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 95 | if(!pConv) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp:98:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 98 | if(pConv->IsFirstInput()) | ^~ [112/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/partialcharges.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/partialcharges.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [113/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/optransform.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/phmodel.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/optransform.h:19, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/optransform.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [114/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/readconformers.cpp [115/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/ophighlight.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/ophighlight.cpp:16: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/ophighlight.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [116/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/sort.cpp [117/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/xout.cpp [118/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp:15: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/query.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.h:18, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp: In member function ‘virtual bool OpenBabel::OpNewS::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp:303:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 303 | if(pmol->NumHvyAtoms() != nPatternAtoms) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ [119/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp: In member function ‘void OpenBabel::OpConfab::Run(OpenBabel::OBConversion*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp:167:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 167 | for (; c < mol.NumConformers(); ++c) { | ~~^~~~~~~~~~~~~~~~~~~~~ [120/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/conformersearch.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp: In member function ‘virtual bool OpenBabel::OpConformer::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:294:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 294 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){ | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:294:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 294 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){ | ~~^~~~~~~~~~~~~~~~~ [121/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/gasteiger.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/gasteiger.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [122/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eem.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eem.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [123/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opalign.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/align.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opalign.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opalign.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [124/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/none.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/none.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [125/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/mmff94.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/mmff94.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [126/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/fromfile.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/fromfile.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/fromfile.cpp: In member function ‘virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/fromfile.cpp:102:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 102 | for ( int i = 1; i <= mol.NumAtoms(); i++) | ~~^~~~~~~~~~~~~~~~~ [127/538] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -shared -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/CMakeFiles/openbabel.dir/link.d -Wl,-soname,libopenbabel.so.8 -o lib64/libopenbabel.so.8.0.0 src/CMakeFiles/openbabel.dir/alias.cpp.o src/CMakeFiles/openbabel.dir/atom.cpp.o src/CMakeFiles/openbabel.dir/base.cpp.o src/CMakeFiles/openbabel.dir/bitvec.cpp.o src/CMakeFiles/openbabel.dir/bond.cpp.o src/CMakeFiles/openbabel.dir/bondtyper.cpp.o src/CMakeFiles/openbabel.dir/builder.cpp.o src/CMakeFiles/openbabel.dir/macrocycle.cpp.o src/CMakeFiles/openbabel.dir/canon.cpp.o src/CMakeFiles/openbabel.dir/chains.cpp.o src/CMakeFiles/openbabel.dir/chargemodel.cpp.o src/CMakeFiles/openbabel.dir/data.cpp.o src/CMakeFiles/openbabel.dir/data_utilities.cpp.o src/CMakeFiles/openbabel.dir/descriptor.cpp.o src/CMakeFiles/openbabel.dir/elements.cpp.o src/CMakeFiles/openbabel.dir/fingerprint.cpp.o src/CMakeFiles/openbabel.dir/forcefield.cpp.o src/CMakeFiles/openbabel.dir/format.cpp.o src/CMakeFiles/openbabel.dir/generic.cpp.o src/CMakeFiles/openbabel.dir/graphsym.cpp.o src/CMakeFiles/openbabel.dir/grid.cpp.o src/CMakeFiles/openbabel.dir/griddata.cpp.o src/CMakeFiles/openbabel.dir/isomorphism.cpp.o src/CMakeFiles/openbabel.dir/kekulize.cpp.o src/CMakeFiles/openbabel.dir/locale.cpp.o src/CMakeFiles/openbabel.dir/matrix.cpp.o src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o src/CMakeFiles/openbabel.dir/molchrg.cpp.o src/CMakeFiles/openbabel.dir/mol.cpp.o src/CMakeFiles/openbabel.dir/obconversion.cpp.o src/CMakeFiles/openbabel.dir/oberror.cpp.o src/CMakeFiles/openbabel.dir/obfunctions.cpp.o src/CMakeFiles/openbabel.dir/obiter.cpp.o src/CMakeFiles/openbabel.dir/obutil.cpp.o src/CMakeFiles/openbabel.dir/op.cpp.o src/CMakeFiles/openbabel.dir/parsmart.cpp.o src/CMakeFiles/openbabel.dir/patty.cpp.o src/CMakeFiles/openbabel.dir/phmodel.cpp.o src/CMakeFiles/openbabel.dir/plugin.cpp.o src/CMakeFiles/openbabel.dir/pointgroup.cpp.o src/CMakeFiles/openbabel.dir/query.cpp.o src/CMakeFiles/openbabel.dir/rand.cpp.o src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o src/CMakeFiles/openbabel.dir/residue.cpp.o src/CMakeFiles/openbabel.dir/ring.cpp.o src/CMakeFiles/openbabel.dir/rotamer.cpp.o src/CMakeFiles/openbabel.dir/rotor.cpp.o src/CMakeFiles/openbabel.dir/spectrophore.cpp.o src/CMakeFiles/openbabel.dir/tautomer.cpp.o src/CMakeFiles/openbabel.dir/tokenst.cpp.o src/CMakeFiles/openbabel.dir/transform.cpp.o src/CMakeFiles/openbabel.dir/typer.cpp.o src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o src/CMakeFiles/openbabel.dir/conformersearch.cpp.o src/CMakeFiles/openbabel.dir/confsearch.cpp.o src/CMakeFiles/openbabel.dir/distgeom.cpp.o src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o src/CMakeFiles/openbabel.dir/depict/depict.cpp.o src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o src/CMakeFiles/openbabel.dir/math/vector3.cpp.o src/CMakeFiles/openbabel.dir/math/align.cpp.o src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -lm -ldl /usr/lib64/libz.so && : [128/538] /usr/bin/cmake -E cmake_symlink_library lib64/libopenbabel.so.8.0.0 lib64/libopenbabel.so.8 lib64/libopenbabel.so && : [129/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/scripts && /usr/bin/swig -python -c++ -doxygen -small -O -templatereduce -naturalvar -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -o /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/python/openbabel/openbabel-python.cpp -DHAVE_EIGEN3 -outdir /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/python/openbabel /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/openbabel-python.i /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/isomorphism.h:160: Warning 325: Nested class not currently supported (Functor ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/spectrophore.h:571: Warning 312: Nested struct not currently supported (ignored). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/spectrophore.h:578: Warning 312: Nested struct not currently supported (ignored). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bitvec.h:59: Warning 560: Unknown Doxygen command: users. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:619: Warning 560: Unknown Doxygen command: f$a. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:619: Warning 560: Unknown Doxygen command: f$c. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:619: Warning 560: Unknown Doxygen command: f$S. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:628: Warning 560: Unknown Doxygen command: f$S. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:628: Warning 566: Unexpected iterator value in DoxygenParser::parse /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:649: Warning 562: Expected Doxygen command: f$. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:649: Warning 566: Unexpected iterator value in DoxygenParser::parse /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:649: Warning 561: Unexpected end of Doxygen comment encountered. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:624: Warning 560: Unknown Doxygen command: f$a. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:624: Warning 560: Unknown Doxygen command: f$c. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:631: Warning 560: Unknown Doxygen command: f$S. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:660: Warning 562: Expected Doxygen command: f$. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:660: Warning 566: Unexpected iterator value in DoxygenParser::parse /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:660: Warning 561: Unexpected end of Doxygen comment encountered. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:404: Warning 509: Overloaded method OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:403: Warning 509: as it is shadowed by OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:407: Warning 509: Overloaded method OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:406: Warning 509: as it is shadowed by OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:410: Warning 509: Overloaded method OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:409: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:413: Warning 509: Overloaded method OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:412: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const &). [130/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eqeq.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eqeq.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eqeq.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [131/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/scripts && /usr/bin/swig -perl5 -c++ -small -O -templatereduce -naturalvar -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -o /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/perl/openbabel-perl.cpp -outdir /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/openbabel-perl.i /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:404: Warning 509: Overloaded method OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:403: Warning 509: as it is shadowed by OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:407: Warning 509: Overloaded method OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:406: Warning 509: as it is shadowed by OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:410: Warning 509: Overloaded method OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:409: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:413: Warning 509: Overloaded method OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:412: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const &). [132/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/scripts && /usr/bin/swig -ruby -c++ -small -O -templatereduce -naturalvar -autorename -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -o /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/ruby/openbabel-ruby.txt /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/openbabel-ruby.i && sed -e '' -e's/void Init_OpenBabel/void Init_openbabel/' /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/ruby/openbabel-ruby.cpp && /usr/bin/cmake -E remove /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/ruby/openbabel-ruby.txt /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/isomorphism.h:160: Warning 325: Nested class not currently supported (Functor ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:404: Warning 509: Overloaded method OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:403: Warning 509: as it is shadowed by OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:407: Warning 509: Overloaded method OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:406: Warning 509: as it is shadowed by OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:410: Warning 509: Overloaded method OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:409: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:413: Warning 509: Overloaded method OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:412: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const &). [133/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qeq.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qeq.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qeq.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [134/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsmilesformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -MF src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o.d -o src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In constructor ‘OpenBabel::OBSmilesParser::OBSmilesParser(bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:291:10: warning: ‘OpenBabel::OBSmilesParser::_preserve_aromaticity’ will be initialized after [-Wreorder] 291 | bool _preserve_aromaticity; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:289:9: warning: ‘int OpenBabel::OBSmilesParser::_rxnrole’ [-Wreorder] 289 | int _rxnrole; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:318:5: warning: when initialized here [-Wreorder] 318 | OBSmilesParser(bool preserve_aromaticity=false): _preserve_aromaticity(preserve_aromaticity), _rxnrole(1) { } | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBSmilesParser::ParseSmiles(OpenBabel::OBMol&, const std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:669:15: warning: variable ‘atom’ set but not used [-Wunused-but-set-variable=] 669 | OBAtom* atom; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘int OpenBabel::OBSmilesParser::NumConnections(OpenBabel::OBAtom*, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2232:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2232 | if (idx-1 < _hcount.size() && _hcount[idx-1] > 0) | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2717:10: warning: variable ‘symbol’ set but not used [-Wunused-but-set-variable=] 2717 | char symbol[10]; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2721:10: warning: unused variable ‘normalValence’ [-Wunused-variable] 2721 | bool normalValence = true; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2722:10: warning: unused variable ‘writeExplicitHydrogen’ [-Wunused-variable] 2722 | bool writeExplicitHydrogen = false; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBMol2Cansmi::BuildCanonTree(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::vector&, OpenBabel::OBCanSmiNode*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3171:22: warning: unused variable ‘bond_order’ [-Wunused-variable] 3171 | unsigned int bond_order = bond->GetBondOrder(); | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3166:20: warning: unused variable ‘nbr_bond_order’ [-Wunused-variable] 3166 | unsigned int nbr_bond_order = nbr_bond->GetBondOrder(); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘std::vector OpenBabel::OBMol2Cansmi::GetCanonClosureDigits(OpenBabel::OBAtom*, OpenBabel::OBBitVec&, std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3318:11: warning: unused variable ‘bo’ [-Wunused-variable] 3318 | int bo = (bond1->IsAromatic())? 1 : bond1->GetBondOrder(); // CJ: why was this line added? bo is never used? | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘void OpenBabel::OBMol2Cansmi::CreateFragCansmiString(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3931:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3931 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3937 | for (int i=0; i >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2897:35: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2897 | snprintf(tcount, 10, "%d", hcount); | ^ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obmolecformat.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:23: In function ‘snprintf’, inlined from ‘OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2897:19: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2889:35: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2889 | snprintf(tcount, 10, "%d", i); | ^ In function ‘snprintf’, inlined from ‘OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2889:19: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘OpenBabel::OBMol2Cansmi::ToCansmilesString(OpenBabel::OBCanSmiNode*, std::__cxx11::basic_string, std::allocator >&, OpenBabel::OBBitVec&, std::vector >&, std::vector >&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3563:32: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 8 [-Wformat-truncation=] 3563 | snprintf(digits, 8, "%d", bci->ringdigit); | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3563:31: note: directive argument in the range [-2147483648, 99] 3563 | snprintf(digits, 8, "%d", bci->ringdigit); | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBMol2Cansmi::ToCansmilesString(OpenBabel::OBCanSmiNode*, std::__cxx11::basic_string, std::allocator >&, OpenBabel::OBBitVec&, std::vector >&, std::vector >&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3563:19: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 12 bytes into a destination of size 8 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [135/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qtpie.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qtpie.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qtpie.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [136/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmdlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -MF src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o.d -o src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h: In function ‘unsigned int MDLValence(unsigned int, int, unsigned int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:51:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 51 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:51:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 51 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:64:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 64 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:64:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 64 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:77:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 77 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:77:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 77 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:90:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 90 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:90:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 90 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:103:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 103 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:103:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 103 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:116:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 116 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:116:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 116 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:119:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 119 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:119:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 119 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:121:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 121 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:121:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 121 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:134:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 134 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:134:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 134 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:137:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 137 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:137:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 137 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:139:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 139 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:139:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 139 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:152:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 152 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:152:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 152 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:155:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 155 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:155:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 155 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:157:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 157 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:157:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 157 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:170:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 170 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:170:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 170 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:173:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 173 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:173:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 173 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:175:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:175:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:188:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 188 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:188:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 188 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:191:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 191 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:191:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 191 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:193:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 193 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:193:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 193 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:206:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 206 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:206:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 206 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:209:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 209 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:209:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 209 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:211:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 211 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:211:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 211 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:223:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 223 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:223:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 223 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:226:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 226 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:226:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 226 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:228:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 228 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:228:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 228 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:240:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 240 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:240:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 240 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:243:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 243 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:243:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 243 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:245:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 245 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:245:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 245 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:257:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 257 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:257:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 257 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:260:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 260 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:260:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 260 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:262:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 262 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:262:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 262 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:274:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 274 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:274:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 274 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:277:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 277 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:277:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 277 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:279:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 279 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:279:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 279 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:291:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 291 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:291:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 291 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:294:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 294 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:294:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 294 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:296:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 296 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:296:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 296 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:298:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 298 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:298:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 298 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:310:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 310 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:310:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 310 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:313:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 313 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:313:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 313 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:315:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 315 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:315:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 315 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:317:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 317 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:317:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 317 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:329:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 329 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:329:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 329 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:332:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 332 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:332:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 332 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:334:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 334 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:334:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 334 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:336:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 336 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:336:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 336 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:348:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 348 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:348:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 348 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:351:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 351 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:351:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 351 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:353:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 353 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:353:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 353 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:355:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 355 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:355:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 355 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:367:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 367 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:367:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 367 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:370:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 370 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:370:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 370 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:372:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 372 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:372:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 372 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:374:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 374 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:374:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 374 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:385:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 385 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:385:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 385 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:388:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 388 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:388:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 388 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:390:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 390 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:390:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 390 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:392:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 392 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:392:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 392 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:394:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 394 | if (val <= 3) return 3; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:394:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 394 | if (val <= 3) return 3; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h: In function ‘unsigned int HYDValence(unsigned int, int, unsigned int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:416:11: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 416 | if (val > impval) { | ~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘virtual bool OpenBabel::MDLFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:776:20: warning: variable ‘count’ set but not used [-Wunused-but-set-variable=] 776 | unsigned int count = 0; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘bool OpenBabel::MDLFormat::ReadAtomBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1502:10: warning: unused variable ‘chiralWatch’ [-Wunused-variable] 1502 | bool chiralWatch=false; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘OpenBabel::MDLFormat::GetTimeDate[abi:cxx11]()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1730:27: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 9 [-Wformat-truncation=] 1730 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1730:22: note: directive argument in the range [-2147483648, 2147483547] 1730 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/iomanip:47, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:27: In function ‘snprintf’, inlined from ‘OpenBabel::MDLFormat::GetTimeDate[abi:cxx11]()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1730:13: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 11 and 56 bytes into a destination of size 11 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘OpenBabel::MDLFormat::CisTransFromUpDown(OpenBabel::OBMol*, std::map, std::allocator > >*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:2046:7: warning: ‘a1_stereo’ may be used uninitialized [-Wmaybe-uninitialized] 2046 | if (a1_stereo == a2_stereo) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:2011:31: note: ‘a1_stereo’ was declared here 2011 | OBStereo::BondDirection a1_stereo, a2_stereo; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:2046:7: warning: ‘a2_stereo’ may be used uninitialized [-Wmaybe-uninitialized] 2046 | if (a1_stereo == a2_stereo) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:2011:42: note: ‘a2_stereo’ was declared here 2011 | OBStereo::BondDirection a1_stereo, a2_stereo; | ^~~~~~~~~ [137/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -MF src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o.d -o src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/getinchi.cpp [138/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmol2format_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -MF src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o.d -o src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp: In member function ‘virtual int OpenBabel::MOL2Format::SkipObjects(int, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp:794:10: warning: unused variable ‘ch’ [-Wunused-variable] 794 | char ch = ifs.peek(); | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp:86:15: warning: ‘bool OpenBabel::IsThiocarboxylSulfur(OBAtom*)’ defined but not used [-Wunused-function] 86 | static bool IsThiocarboxylSulfur(OBAtom* queryatom) | ^~~~~~~~~~~~~~~~~~~~ [139/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -MF src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o.d -o src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/unique.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/unique.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h: In member function ‘bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ [140/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dasciiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -MF src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o.d -o src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/asciiformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/asciiformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [141/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpdbformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -MF src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o.d -o src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obfunctions.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:612:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 612 | if (origin == pUC->GetSpaceGroup()->HEXAGONAL_ORIGIN) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:681:58: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 681 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obmolecformat.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:17: In function ‘snprintf’, inlined from ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:681:21: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:701:70: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 701 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^ In function ‘snprintf’, inlined from ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:701:29: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:739:35: warning: ‘%+d’ directive output may be truncated writing between 2 and 6 bytes into a region of size 3 [-Wformat-truncation=] 739 | snprintf(scharge, 3, "%+d", charge); | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:739:34: note: directive argument in the range [-32768, 32767] 739 | snprintf(scharge, 3, "%+d", charge); | ^~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:739:21: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 3 and 7 bytes into a destination of size 3 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘OpenBabel::PDBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32761 [-Wstringop-truncation] 299 | strncpy(integerBuffer, buffer+columnAsSpecifiedInPDB-1, 5); | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32756 [-Wstringop-truncation] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32751 [-Wstringop-truncation] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32746 [-Wstringop-truncation] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32741 [-Wstringop-truncation] [142/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcopyformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o -MF src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o.d -o src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/copyformat.cpp [143/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dasciiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o.d -o src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/asciipainter.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::DrawText(double, double, const std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/asciipainter.cpp:118:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 118 | for (int i=0; iGetId() == ct->end || a->GetId() == stereo.neighbor[0] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp:200:54: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘AT_NUM’ {aka ‘short int’} [-Wsign-compare] 200 | if ( !(b->GetId() == ct->begin || b->GetId() == stereo.neighbor[3] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ [146/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmolreport_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/molreport.dir/molreport.cpp.o -MF src/formats/CMakeFiles/molreport.dir/molreport.cpp.o.d -o src/formats/CMakeFiles/molreport.dir/molreport.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/molreport.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/molreport.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [147/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpainterformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -MF src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o.d -o src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/commandpainter.cpp [148/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpainterformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -MF src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o.d -o src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/depict.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp: In member function ‘virtual bool OpenBabel::PainterFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp:113:12: warning: unused variable ‘ofs’ [-Wunused-variable] 113 | ostream& ofs = *pConv->GetOutStream(); | ^~~ [149/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o -MF src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o.d -o src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MNAformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MNAformat.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MNAformat.cpp:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [150/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtextformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/textformat.dir/textformat.cpp.o -MF src/formats/CMakeFiles/textformat.dir/textformat.cpp.o.d -o src/formats/CMakeFiles/textformat.dir/textformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/textformat.cpp [151/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dreportformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o -MF src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o.d -o src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/reportformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/reportformat.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [152/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpovrayformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -MF src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o.d -o src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp: In member function ‘void OpenBabel::PovrayFormat::OutputHeader(std::ostream&, OpenBabel::OBMol&, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp:173:12: warning: variable ‘time_res’ set but not used [-Wunused-but-set-variable=] 173 | size_t time_res; /* Result of strftime */ | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp: In member function ‘virtual bool OpenBabel::PovrayFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp:807:17: warning: unused variable ‘title’ [-Wunused-variable] 807 | const char* title = pmol->GetTitle(); | ^~~~~ [153/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtitleformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o -MF src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o.d -o src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/titleformat.cpp [154/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsvgformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o -MF src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o.d -o src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/depict.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp: In member function ‘virtual bool OpenBabel::SVGFormat::WriteChemObject(OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:226:42: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 226 | bool nomore = _nmax && (_objects.size()==_nmax); | ~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:248:18: warning: unused variable ‘n’ [-Wunused-variable] 248 | unsigned int n=0; | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp: In member function ‘virtual bool OpenBabel::SVGFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:273:8: warning: unused variable ‘ret’ [-Wunused-variable] 273 | bool ret = WriteSVG(pConv,_objects); | ^~~ [155/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpngformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o -MF src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o.d -o src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pngformat.cpp [156/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dconfabreport_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o -MF src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o.d -o src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/align.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp: In member function ‘void OpenBabel::ConfabReport::WriteOutput(std::ostream&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp:129:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 129 | for (int i=1; i < binvals.size(); i++) | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp:134:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | for (int i=1; i < cumbins.size(); i++) | ~~^~~~~~~~~~~~~~~~ [157/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dacesformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o -MF src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o.d -o src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acesformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acesformat.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [158/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dabinitformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o -MF src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o.d -o src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp: In member function ‘virtual bool OpenBabel::ABINITFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp:99:12: warning: variable ‘acell’ set but not used [-Wunused-but-set-variable=] 99 | double acell[3]; // scale of lattice vectors | ^~~~~ [159/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcastepformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o -MF src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o.d -o src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp: In member function ‘OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:195:21: warning: ‘pressure’ may be used uninitialized [-Wmaybe-uninitialized] 195 | pv = volume * pressure * GPA_A3_TO_KCAL_PER_MOL; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:94:12: note: ‘pressure’ was declared here 94 | double pressure, volume, enthalpy; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:195:21: warning: ‘volume’ may be used uninitialized [-Wmaybe-uninitialized] 195 | pv = volume * pressure * GPA_A3_TO_KCAL_PER_MOL; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:94:22: note: ‘volume’ was declared here 94 | double pressure, volume, enthalpy; | ^~~~~~ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obmolecformat.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:16: In function ‘snprintf’, inlined from ‘OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:211:17: /usr/include/bits/stdio2.h:68:35: warning: ‘enthalpy’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp: In member function ‘OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:94:30: note: ‘enthalpy’ was declared here 94 | double pressure, volume, enthalpy; | ^~~~~~~~ [160/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Daoforceformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -MF src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o.d -o src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/aoforceformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/aoforceformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [161/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcrystal09format_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -MF src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o.d -o src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/crystal09format.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/crystal09format.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [162/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dadfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o -MF src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o.d -o src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:38: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:46: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp: In member function ‘bool OpenBabel::OBT41Format::ReadASCII(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:875:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 875 | while( buf != "Geometry" && ifs ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:875:53: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 875 | while( buf != "Geometry" && ifs ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:888:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 888 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:888:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 888 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:910:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 910 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:910:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 910 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:925:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 925 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:925:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 925 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:940:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 940 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:940:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 940 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ [163/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Ddmolformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -MF src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o.d -o src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/dmolformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/dmolformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [164/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Ddaltonformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -MF src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o.d -o src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp: In member function ‘virtual bool OpenBabel::DALTONInputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:147:9: warning: variable ‘atomcount’ set but not used [-Wunused-but-set-variable=] 147 | int atomcount = 0; // for each atom type | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp: In member function ‘virtual bool OpenBabel::DALTONInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:311:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 311 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:331:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 331 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ [165/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -MF src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o.d -o src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fhiaimsformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fhiaimsformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [166/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfchkformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -MF src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o.d -o src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp: In member function ‘virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:596:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 596 | if (alphaorb_found && (numAOrb > alphaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:609:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 609 | if (betaorb_found && (numBOrb > betaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:700:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 700 | if (numAOrb > 0 && alphaorb.size() == numAOrb) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:704:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 704 | if (numBOrb > 0 && betaorb.size() == numBOrb) { // open shell calculation | ~~~~~~~~~~~~~~~^~~~~~~~~~ [167/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgausscubeformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -MF src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o.d -o src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:30: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp: In member function ‘virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:432:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 432 | while (vgd.size() < nCubes) | ~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:479:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 479 | while (values.size() < n*nCubes) | ~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:114:17: warning: unused variable ‘title’ [-Wunused-variable] 114 | const char* title = pConv->GetTitle(); | ^~~~~ [168/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgausszmatformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -MF src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o.d -o src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausszmatformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausszmatformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausszmatformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausszmatformat.cpp: In member function ‘virtual bool OpenBabel::GaussianZMatrixInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausszmatformat.cpp:149:34: warning: unused variable ‘atom’ [-Wunused-variable] 149 | FOR_ATOMS_OF_MOL(atom, mol) | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:417:45: note: in definition of macro ‘FOR_ATOMS_OF_MOL’ 417 | #define FOR_ATOMS_OF_MOL(a,m) for (auto a : impl::MolGetAtoms(m)) | ^ [169/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgulpformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o -MF src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o.d -o src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gulpformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gulpformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gulpformat.cpp: In member function ‘OpenBabel::GULPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gulpformat.cpp:360:14: warning: ‘enthalpy_eV’ may be used uninitialized [-Wmaybe-uninitialized] 360 | double en_kcal_per_mole = enthalpy_eV * EV_TO_KCAL_PER_MOL; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gulpformat.cpp:96:12: note: ‘enthalpy_eV’ was declared here 96 | double enthalpy_eV, pv_eV; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gulpformat.cpp:361:14: warning: ‘pv_eV’ may be used uninitialized [-Wmaybe-uninitialized] 361 | double pv_kcal_per_mole = pv_eV * EV_TO_KCAL_PER_MOL; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gulpformat.cpp:96:25: note: ‘pv_eV’ was declared here 96 | double enthalpy_eV, pv_eV; | ^~~~~ [170/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dhinformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o -MF src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o.d -o src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/hinformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/hinformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [171/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Djaguarformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -MF src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o.d -o src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/jaguarformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/jaguarformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [172/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgamessformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -MF src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o.d -o src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp: In member function ‘virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:589:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 589 | for (unsigned int i=0; i < modeCount; ++i) { | ~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:233:9: warning: variable ‘ndummyatoms’ set but not used [-Wunused-but-set-variable=] 233 | int ndummyatoms = 0; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:521:11: warning: ‘lowFreqModesBegin’ may be used uninitialized [-Wmaybe-uninitialized] 521 | if (numFreq < lowFreqModesBegin) // imaginary frequency | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:244:9: note: ‘lowFreqModesBegin’ was declared here 244 | int lowFreqModesBegin; // the number of the first low frequency mode | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:523:11: warning: ‘lowFreqModesEnd’ may be used uninitialized [-Wmaybe-uninitialized] 523 | if (numFreq > lowFreqModesEnd) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:245:9: note: ‘lowFreqModesEnd’ was declared here 245 | int lowFreqModesEnd; // the number of the last low frequency mode | ^~~~~~~~~~~~~~~ [173/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmolproformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o -MF src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o.d -o src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/molproformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/molproformat.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [174/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgaussformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -MF src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o.d -o src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp: In function ‘void OpenBabel::add_unique_pairdata_to_mol(OBMol*, std::string, std::string, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp:284:19: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 284 | if (vs.size() >= start) | ~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp:287:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 287 | for(i=start+1; (i=natoms) || (molecule->GetAtom(i+1)->GetAtomicNum() != atoi(vs[2].c_str()))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadMultipoleMoment(std::istream*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:306:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 306 | else if (vs[0][0] == '1') | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadPartialCharges(std::istream*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:423:56: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 423 | if (molecule->GetAtom(i++)->GetAtomicNum() != charge) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadMEPCalculation(std::istream*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:571:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 571 | if (energies.size() != molecule->NumConformers()) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::istream*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:932:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 932 | if (atoi(buffer) != natoms) | ~~~~~~~~~~~~~^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:111:20: warning: ‘OpenBabel::BETA_ORBITAL_PATTERN’ defined but not used [-Wunused-variable] 111 | static const char* BETA_ORBITAL_PATTERN = "Beta"; | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘OpenBabel::NWChemOutputFormat::ReadCoordinates(std::basic_istream >*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:202:13: warning: ‘coordinates’ may be used uninitialized [-Wmaybe-uninitialized] 202 | double* coordinates; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::basic_istream >*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:957:21: warning: ‘nbeads’ may be used uninitialized [-Wmaybe-uninitialized] 957 | if (bead_number != nbeads) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:900:18: note: ‘nbeads’ was declared here 900 | unsigned int nbeads; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘OpenBabel::NWChemOutputFormat::ReadSinglePointCalculation(std::basic_istream >*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:772:5: warning: ‘energy’ may be used uninitialized [-Wmaybe-uninitialized] 772 | if (energy == 0) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:750:12: note: ‘energy’ was declared here 750 | double energy; | ^~~~~~ [179/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsiestaformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o -MF src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o.d -o src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp: In member function ‘virtual bool OpenBabel::SIESTAFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp:92:10: warning: variable ‘coordsAreAngstrom’ set but not used [-Wunused-but-set-variable=] 92 | bool coordsAreAngstrom = false; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp:98:12: warning: variable ‘size’ set but not used [-Wunused-but-set-variable=] 98 | size_t size; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp:102:30: warning: unused variable ‘numSpecies’ [-Wunused-variable] 102 | int atomicNum, numAtoms, numSpecies; | ^~~~~~~~~~ [180/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dturbomoleformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -MF src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o.d -o src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/turbomoleformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/turbomoleformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [181/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dxsfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o -MF src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o.d -o src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/xsfformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/xsfformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [182/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dzindoformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o -MF src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o.d -o src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/zindoformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/zindoformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [183/538] /usr/bin/g++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o -MF src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o.d -o src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/APIInterface.cpp [184/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DCSRformat_EXPORTS -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o -MF src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o.d -o src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/CSRformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/CSRformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [185/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o -MF src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o.d -o src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/PQSformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/PQSformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/PQSformat.cpp: In member function ‘OpenBabel::PQSFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/PQSformat.cpp:234:24: warning: ‘__strncat_chk’ output may be truncated copying between 0 and 255 bytes from a string of length 255 [-Wstringop-truncation] 234 | strncat(full_coord_path, coord_file, | ^ [186/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dvaspformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o -MF src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o.d -o src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp: In member function ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:461:17: warning: unused variable ‘freqnum’ [-Wunused-variable] 461 | int freqnum = atoi(vs[0].c_str()); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp: In member function ‘virtual bool OpenBabel::VASPFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:678:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 678 | for(int i = 0; i < atoms_sorted.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp: In member function ‘OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:420:21: warning: ‘fermi’ may be used uninitialized [-Wmaybe-uninitialized] 420 | dos->SetData(fermi, energies, densities, integration); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:402:14: note: ‘fermi’ was declared here 402 | double fermi; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:566:14: warning: ‘enthalpy_eV’ may be used uninitialized [-Wmaybe-uninitialized] 566 | double en_kcal_per_mole = enthalpy_eV * EV_TO_KCAL_PER_MOL; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:173:12: note: ‘enthalpy_eV’ was declared here 173 | double enthalpy_eV, pv_eV; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:567:14: warning: ‘pv_eV’ may be used uninitialized [-Wmaybe-uninitialized] 567 | double pv_kcal_per_mole = pv_eV * EV_TO_KCAL_PER_MOL; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:173:25: note: ‘pv_eV’ was declared here 173 | double enthalpy_eV, pv_eV; | ^~~~~ [187/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dalchemyformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -MF src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o.d -o src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/alchemyformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/alchemyformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [188/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dacrformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o -MF src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o.d -o src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp: In member function ‘OpenBabel::ACRFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp:166:12: warning: ‘atoms’ may be used uninitialized [-Wmaybe-uninitialized] 166 | } else if ( pmol->NumAtoms() != atoms ) { | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp:95:18: note: ‘atoms’ was declared here 95 | unsigned int atoms, bonds, tmp; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp:162:5: warning: ‘bonds’ may be used uninitialized [-Wmaybe-uninitialized] 162 | if ( pmol->NumBonds() != bonds ) { | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp:95:25: note: ‘bonds’ was declared here 95 | unsigned int atoms, bonds, tmp; | ^~~~~ [189/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Damberformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o -MF src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o.d -o src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/amberformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/amberformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [190/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dbalstformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o -MF src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o.d -o src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/balstformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/balstformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [191/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgamessukformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -MF src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o.d -o src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp:16: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp: In member function ‘bool OpenBabel::GAMESSUKOutputFormat::ReadInitialCartesian(OpenBabel::OBMol&, std::istream&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp:813:26: warning: catching polymorphic type ‘class std::regex_error’ by value [-Wcatch-value=] 813 | } catch (regex_error ex) { | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp: In member function ‘bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz2(OpenBabel::OBMol&, std::istream&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp:907:12: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable=] 907 | bool ok=false; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp: In member function ‘virtual bool OpenBabel::GAMESSUKOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp:1222:12: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable=] 1222 | bool ok; | ^~ [192/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dbgfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o -MF src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o.d -o src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/bgfformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/bgfformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [193/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -MF src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o.d -o src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp: In member function ‘void OpenBabel::MCDLFormat::solve(int, int (*)[4], int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:260:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 260 | if (depth > maxdepth) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:264:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 264 | for (i=0; i<=MAXFRAGS; i++) strngs[i]=(char *)calloc(MAXFRAGS,sizeof(char)); | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:289:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 289 | if (jflag) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:293:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 293 | nt = 1; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp: In member function ‘void OpenBabel::MCDLFormat::setMCDL(std::string, OpenBabel::OBMol*, std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:1287:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1287 | if (nPrev == acount) { | ~~~~~~^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp: In member function ‘int OpenBabel::MCDLFormat::indexOf(std::string, std::string, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:1417:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 1417 | if (result == string::npos) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:1418:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1418 | if (result >= instring.length()) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp: In member function ‘int OpenBabel::MCDLFormat::lastIndexOf(std::string, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:1431:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 1431 | if (n == string::npos) | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp: In member function ‘OpenBabel::MCDLFormat::solve(int, int (*) [4], int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:247:32: warning: ‘jump’ may be used uninitialized [-Wmaybe-uninitialized] 247 | int numdups = 0, dupfrag, jump; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:404:17: warning: ‘dupfrag’ may be used uninitialized [-Wmaybe-uninitialized] 404 | if (ix[i] > dupfrag) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:247:23: note: ‘dupfrag’ was declared here 247 | int numdups = 0, dupfrag, jump; | ^~~~~~~ [194/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dorcaformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o -MF src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o.d -o src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp: In member function ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:385:33: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 385 | while(vs.size() == nColumn+1) { | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:400:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 400 | for (unsigned int i = 0; i < nColumn; i++) { | ~~^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:412:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 412 | for (unsigned int i = 0; i < nColumn; i++) { | ~~^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:131:12: warning: unused variable ‘energy’ [-Wunused-variable] 131 | double energy=0; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:138:9: warning: variable ‘nModeAll’ set but not used [-Wunused-but-set-variable=] 138 | int nModeAll = 0; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp: In member function ‘std::string OpenBabel::OrcaOutputFormat::checkColumns(std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:759:26: warning: catching polymorphic type ‘class std::regex_error’ by value [-Wcatch-value=] 759 | } catch (regex_error ex) { | ^~ [195/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dboxformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o -MF src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o.d -o src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/boxformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/boxformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [196/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcacaoformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -MF src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o.d -o src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cacaoformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cacaoformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [197/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcacheformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o -MF src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o.d -o src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cacheformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cacheformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [198/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcccformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o -MF src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o.d -o src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cccformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cccformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [199/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcarformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/carformat.dir/carformat.cpp.o -MF src/formats/CMakeFiles/carformat.dir/carformat.cpp.o.d -o src/formats/CMakeFiles/carformat.dir/carformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/carformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/carformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [200/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchem3dformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -MF src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o.d -o src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chem3dformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chem3dformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [201/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchemdrawct_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -MF src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o.d -o src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawct.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawct.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [202/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchemtoolformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -MF src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o.d -o src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemtoolformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemtoolformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [203/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchemdrawcdx_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -MF src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o.d -o src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:277:28: warning: ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’ was hidden [-Woverloaded-virtual=] 277 | virtual const char *GetTitle(bool /*replaceNewlines*/ = true) const { return ""; } | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:99:15: note: by ‘std::string OpenBabel::OBReaction::GetTitle() const’ 99 | std::string GetTitle() const { return _title; } | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:278:21: warning: ‘virtual void OpenBabel::OBBase::SetTitle(const char*)’ was hidden [-Woverloaded-virtual=] 278 | virtual void SetTitle(const char *) {} | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:101:8: note: by ‘void OpenBabel::OBReaction::SetTitle(const std::string&)’ 101 | void SetTitle(const std::string& title) { _title=title; } | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp: In member function ‘bool OpenBabel::ChemDrawBinaryXFormat::DoReaction(OpenBabel::CDXReader&, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:339:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 339 | for(unsigned i=0;iNumAtoms();++idx) | ~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp: In member function ‘bool OpenBabel::ChemDrawBinaryXFormat::DoFragmentImpl(OpenBabel::CDXReader&, OpenBabel::OBMol*, std::map&, std::map&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:478:27: warning: variable ‘hasElement’ set but not used [-Wunused-but-set-variable=] 478 | bool isAlias=false, hasElement=false; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:622:17: warning: ‘bgnIdx’ may be used uninitialized [-Wmaybe-uninitialized] 622 | if(!order || !bgnIdx || !endIdx) | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:581:11: note: ‘bgnIdx’ was declared here 581 | int bgnIdx, endIdx ; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:622:28: warning: ‘endIdx’ may be used uninitialized [-Wmaybe-uninitialized] 622 | if(!order || !bgnIdx || !endIdx) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:581:19: note: ‘endIdx’ was declared here 581 | int bgnIdx, endIdx ; | ^~~~~~ [204/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcofformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o -MF src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o.d -o src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp: In member function ‘virtual bool OpenBabel::COFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp:137:22: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 137 | if(vs.size() < offset+9) | ~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 184 | for(int j=0 ; j< natoms ; j++) | ~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp: In member function ‘virtual bool OpenBabel::COFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp:372:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 372 | for( int j=0; j