Warning: Permanently added '13.116.88.74' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10615622-fedora-rawhide-s390x --chroot fedora-rawhide-s390x Version: 1.8 PID: 2560 Logging PID: 2562 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 10615622, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-s390x', 'enable_net': False, 'fedora_review': False, 'git_hash': '71a899366331dd562498ce3b58eead6e4bc927f5', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/sagitter/openbabel-3.2.0/openbabel', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'openbabel', 'package_version': '3.2.0-1', 'project_dirname': 'openbabel-3.2.0', 'project_name': 'openbabel-3.2.0', 'project_owner': 'sagitter', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/sagitter/openbabel-3.2.0/fedora-rawhide-s390x/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'sagitter/openbabel-3.2.0--sagitter', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 1, 'submitter': 'sagitter', 'tags': [], 'task_id': '10615622-fedora-rawhide-s390x', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/sagitter/openbabel-3.2.0/openbabel /var/lib/copr-rpmbuild/workspace/workdir-vg176f3l/openbabel --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/sagitter/openbabel-3.2.0/openbabel', '/var/lib/copr-rpmbuild/workspace/workdir-vg176f3l/openbabel', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-vg176f3l/openbabel'... Running: git checkout 71a899366331dd562498ce3b58eead6e4bc927f5 -- cmd: ['git', 'checkout', '71a899366331dd562498ce3b58eead6e4bc927f5', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-vg176f3l/openbabel rc: 0 stdout: stderr: Note: switching to '71a899366331dd562498ce3b58eead6e4bc927f5'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 71a8993 automatic import of openbabel Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-vg176f3l/openbabel rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD tail: /var/lib/copr-rpmbuild/main.log: file truncated INFO: Reading sources specification file: sources INFO: Downloading openbabel-openbabel-3-2-0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o openbabel-openbabel-3-2-0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/sagitter/openbabel-3.2.0/openbabel/openbabel-openbabel-3-2-0.tar.gz/md5/7ff7d2b8de07fa0507a7826f62d7045a/openbabel-openbabel-3-2-0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 36.06M 100 36.06M 0 0 14.45M 0 00:02 00:02 10.40M INFO: Reading stdout from command: md5sum openbabel-openbabel-3-2-0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-vg176f3l/openbabel/openbabel.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-vg176f3l/openbabel --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1781813685.831258 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.7 starting (python version = 3.14.5, NVR = mock-6.7-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-vg176f3l/openbabel/openbabel.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-vg176f3l/openbabel --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1781813685.831258 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-vg176f3l/openbabel/openbabel.spec) Config(fedora-rawhide-s390x) Start: clean chroot Finish: clean chroot Mock Version: 6.7 INFO: Mock Version: 6.7 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1781813685.831258/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-53d57f83-1a49-4310-8050-1c1e1f289177 INFO: Checking that dc0d82720b27744d0f30c9de9178db55cc354fc52ac3993c4d1594aed0cdaa19 image matches host's architecture INFO: Copy content of container dc0d82720b27744d0f30c9de9178db55cc354fc52ac3993c4d1594aed0cdaa19 to /var/lib/mock/fedora-rawhide-s390x-bootstrap-1781813685.831258/root INFO: mounting dc0d82720b27744d0f30c9de9178db55cc354fc52ac3993c4d1594aed0cdaa19 with podman image mount INFO: image dc0d82720b27744d0f30c9de9178db55cc354fc52ac3993c4d1594aed0cdaa19 as /var/lib/containers/storage/overlay/d668f47af9290f8dd6b48f0951d9df6f283c8b1776d2738fb8f15d71234eff7d/merged INFO: umounting image dc0d82720b27744d0f30c9de9178db55cc354fc52ac3993c4d1594aed0cdaa19 (/var/lib/containers/storage/overlay/d668f47af9290f8dd6b48f0951d9df6f283c8b1776d2738fb8f15d71234eff7d/merged) with podman image umount INFO: Removing image mock-bootstrap-53d57f83-1a49-4310-8050-1c1e1f289177 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1781813685.831258/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-6.fc45.s390x rpm-sequoia-1.10.2-2.fc45.s390x dnf5-5.4.2.1-3.fc45.s390x dnf5-plugins-5.4.2.1-3.fc45.s390x Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 5.6 KiB/s | 21.7 KiB | 00m04s fedora 100% | 3.9 MiB/s | 19.5 MiB | 00m05s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash s390x 0:5.3.9-3.fc44 fedora 8.6 MiB bzip2 s390x 0:1.0.8-23.fc44 fedora 86.6 KiB coreutils s390x 0:9.11-3.fc45 fedora 6.0 MiB cpio s390x 0:2.15-9.fc44 fedora 1.1 MiB diffutils s390x 0:3.12-5.fc44 fedora 1.6 MiB fedora-release-common noarch 0:45-0.8 fedora 4.2 KiB findutils s390x 1:4.10.0-7.fc44 fedora 1.9 MiB gawk s390x 0:5.4.0-3.fc45 fedora 2.2 MiB glibc-minimal-langpack s390x 0:2.43.9000-20.fc45 fedora 0.0 B grep s390x 0:3.12-3.fc44 fedora 1.0 MiB gzip s390x 0:1.14-2.fc44 fedora 397.2 KiB info s390x 0:7.3-2.fc45 fedora 403.8 KiB patch s390x 0:2.8-4.fc44 fedora 242.2 KiB redhat-rpm-config noarch 0:344-2.fc45 fedora 183.7 KiB rpm-build s390x 0:6.0.1-6.fc45 fedora 280.7 KiB sed s390x 0:4.10-1.fc45 fedora 947.1 KiB shadow-utils s390x 2:4.19.3-3.fc45 fedora 4.1 MiB tar s390x 2:1.35-8.fc44 fedora 3.0 MiB unzip s390x 0:6.0-69.fc44 fedora 433.0 KiB util-linux s390x 0:2.42.2-1.fc45 fedora 3.5 MiB which s390x 0:2.25-1.fc45 fedora 83.3 KiB xz s390x 1:5.8.3-1.fc45 fedora 1.4 MiB Installing dependencies: R-srpm-macros noarch 0:1.3.7-2.fc45 fedora 3.5 KiB add-determinism s390x 0:0.7.3-2.fc45 fedora 2.4 MiB alternatives s390x 0:1.33-5.fc44 fedora 61.8 KiB ansible-srpm-macros noarch 0:1-20.1.fc44 fedora 35.7 KiB audit-libs s390x 0:4.1.4-2.fc45 fedora 393.8 KiB binutils s390x 0:2.46.50-10.fc45 fedora 29.5 MiB build-reproducibility-srpm-macros noarch 0:0.7.3-2.fc45 fedora 1.2 KiB bzip2-libs s390x 0:1.0.8-23.fc44 fedora 84.3 KiB ca-certificates noarch 0:2025.2.80_v9.0.304-7.fc45 fedora 2.7 MiB cmake-srpm-macros noarch 0:4.3.0-3.fc45 fedora 524.0 B coreutils-common s390x 0:9.11-3.fc45 fedora 10.9 MiB crypto-policies noarch 0:20260331-1.git4c567b2.fc45 fedora 133.2 KiB curl s390x 0:8.21.0~rc2-1.fc45 fedora 508.4 KiB cyrus-sasl-lib s390x 0:2.1.28-35.fc44 fedora 2.4 MiB debugedit s390x 0:5.3-2.fc45 fedora 224.1 KiB dwz s390x 0:0.16-3.fc44 fedora 306.2 KiB ed s390x 0:1.22.5-2.fc45 fedora 149.5 KiB efi-srpm-macros noarch 0:6-6.fc44 fedora 40.2 KiB elfutils s390x 0:0.195-1.fc45 fedora 3.0 MiB elfutils-debuginfod-client s390x 0:0.195-1.fc45 fedora 75.3 KiB elfutils-libelf s390x 0:0.195-1.fc45 fedora 1.2 MiB elfutils-libs s390x 0:0.195-1.fc45 fedora 782.1 KiB erlang-srpm-macros noarch 0:0.3.11-1.fc45 fedora 1.9 KiB fedora-gpg-keys noarch 0:45-0.1 fedora 133.4 KiB fedora-release noarch 0:45-0.8 fedora 0.0 B fedora-release-identity-basic noarch 0:45-0.8 fedora 664.0 B fedora-repos noarch 0:45-0.1 fedora 4.9 KiB fedora-repos-rawhide noarch 0:45-0.1 fedora 2.2 KiB file s390x 0:5.47-3.fc45 fedora 100.9 KiB file-libs s390x 0:5.47-3.fc45 fedora 12.2 MiB filesystem s390x 0:3.18-58.fc45 fedora 112.0 B filesystem-srpm-macros noarch 0:3.18-58.fc45 fedora 38.2 KiB fonts-srpm-macros noarch 1:5.0.0-3.fc45 fedora 55.8 KiB forge-srpm-macros noarch 0:0.4.0-4.fc44 fedora 38.9 KiB fpc-srpm-macros noarch 0:1.3-16.fc44 fedora 144.0 B gap-srpm-macros noarch 0:2-2.fc44 fedora 2.1 KiB gdb-minimal s390x 0:17.1-10.fc45 fedora 15.9 MiB gdbm-libs s390x 1:1.23-11.fc44 fedora 125.2 KiB ghc-srpm-macros noarch 0:1.10-1.fc44 fedora 792.0 B glibc s390x 0:2.43.9000-20.fc45 fedora 5.4 MiB glibc-common s390x 0:2.43.9000-20.fc45 fedora 1.1 MiB glibc-gconv-extra s390x 0:2.43.9000-20.fc45 fedora 6.8 MiB gmp s390x 1:6.3.0-5.fc44 fedora 773.8 KiB gnat-srpm-macros noarch 0:7-2.fc44 fedora 1.0 KiB gnome-srpm-macros noarch 0:1.0-1.fc45 fedora 3.5 KiB gnulib-l10n noarch 0:20241231-3.fc45 fedora 655.0 KiB gnupg2 s390x 0:2.4.9-16.fc45 fedora 6.6 MiB gnupg2-dirmngr s390x 0:2.4.9-16.fc45 fedora 661.2 KiB gnupg2-gpg-agent s390x 0:2.4.9-16.fc45 fedora 721.4 KiB gnupg2-gpgconf s390x 0:2.4.9-16.fc45 fedora 273.1 KiB gnupg2-keyboxd s390x 0:2.4.9-16.fc45 fedora 213.0 KiB gnupg2-verify s390x 0:2.4.9-16.fc45 fedora 364.0 KiB gnutls s390x 0:3.8.13-1.fc45 fedora 3.7 MiB go-srpm-macros noarch 0:3.8.0-2.fc44 fedora 61.9 KiB gpgverify noarch 0:2.2-4.fc44 fedora 8.7 KiB ima-evm-utils-libs s390x 0:1.6.2-10.fc45 fedora 56.3 KiB jansson s390x 0:2.14-4.fc44 fedora 88.7 KiB java-srpm-macros noarch 0:1-8.fc44 fedora 870.0 B json-c s390x 0:0.18-8.fc44 fedora 82.3 KiB kernel-srpm-macros noarch 0:1.0-29.fc45 fedora 1.9 KiB keyutils-libs s390x 0:1.6.3-7.fc44 fedora 49.9 KiB krb5-libs s390x 0:1.22.2-7.fc45 fedora 2.5 MiB libacl s390x 0:2.3.2-7.fc45 fedora 35.6 KiB libarchive s390x 0:3.8.7-1.fc45 fedora 1.0 MiB libassuan s390x 0:2.5.7-5.fc44 fedora 163.6 KiB libattr s390x 0:2.5.2-9.fc45 fedora 24.1 KiB libblkid s390x 0:2.42.2-1.fc45 fedora 294.1 KiB libbrotli s390x 0:1.2.0-4.fc45 fedora 912.3 KiB libcap s390x 0:2.78-1.fc45 fedora 210.1 KiB libcap-ng s390x 0:0.9.3-2.fc45 fedora 64.3 KiB libcbor s390x 0:0.14.0-2.fc45 fedora 83.3 KiB libcom_err s390x 0:1.47.4-1.fc45 fedora 58.8 KiB libcurl s390x 0:8.21.0~rc2-1.fc45 fedora 1.1 MiB libeconf s390x 0:0.7.9-3.fc44 fedora 64.6 KiB libevent s390x 0:2.1.12-17.fc44 fedora 981.7 KiB libfdisk s390x 0:2.42.2-1.fc45 fedora 394.6 KiB libffi s390x 0:3.5.2-2.fc44 fedora 79.3 KiB libfido2 s390x 0:1.17.0-2.fc45 fedora 252.5 KiB libfsverity s390x 0:1.7-1.fc45 fedora 24.1 KiB libgcc s390x 0:16.1.1-2.fc45 fedora 213.6 KiB libgcrypt s390x 0:1.12.2-1.fc45 fedora 1.3 MiB libgomp s390x 0:16.1.1-2.fc45 fedora 576.8 KiB libgpg-error s390x 0:1.61-1.fc45 fedora 957.5 KiB libidn2 s390x 0:2.3.8-3.fc44 fedora 560.2 KiB libksba s390x 0:1.8.0-1.fc45 fedora 426.9 KiB liblastlog2 s390x 0:2.42.2-1.fc45 fedora 33.2 KiB libmount s390x 0:2.42.2-1.fc45 fedora 404.1 KiB libnghttp2 s390x 0:1.69.0-1.fc45 fedora 173.7 KiB libnghttp3 s390x 0:1.16.0-1.fc45 fedora 154.4 KiB libpkgconf s390x 0:2.5.1-1.fc45 fedora 93.7 KiB libpsl s390x 0:0.21.5-7.fc44 fedora 76.1 KiB libselinux s390x 0:3.10-2.fc45 fedora 208.9 KiB libselinux-utils s390x 0:3.10-2.fc45 fedora 269.4 KiB libsemanage s390x 0:3.10-2.fc45 fedora 311.8 KiB libsepol s390x 0:3.10-1.fc44 fedora 865.9 KiB libsmartcols s390x 0:2.42.2-1.fc45 fedora 196.1 KiB libssh s390x 0:0.12.0-1.fc45 fedora 702.6 KiB libssh-config noarch 0:0.12.0-1.fc45 fedora 277.0 B libstdc++ s390x 0:16.1.1-2.fc45 fedora 3.4 MiB libtasn1 s390x 0:4.21.0-1.fc45 fedora 184.4 KiB libtool-ltdl s390x 0:2.5.4-10.fc44 fedora 69.6 KiB libunistring s390x 0:1.1-11.fc44 fedora 1.8 MiB libusb1 s390x 0:1.0.30-1.fc45 fedora 175.4 KiB libuuid s390x 0:2.42.2-1.fc45 fedora 33.0 KiB libverto s390x 0:0.3.2-12.fc44 fedora 25.0 KiB libxcrypt s390x 0:4.5.2-3.fc44 fedora 289.0 KiB libxml2 s390x 0:2.13.9-2.fc45 fedora 1.9 MiB libzstd s390x 0:1.5.7-5.fc44 fedora 1.0 MiB linkdupes s390x 0:0.7.3-2.fc45 fedora 916.0 KiB lua-libs s390x 0:5.5.0-1.fc45 fedora 341.8 KiB lua-srpm-macros noarch 0:1-17.fc44 fedora 1.3 KiB lz4-libs s390x 0:1.10.0-4.fc44 fedora 197.1 KiB mpfr s390x 0:4.2.2-3.fc44 fedora 699.4 KiB ncurses-base noarch 0:6.6-2.fc45 fedora 329.7 KiB ncurses-libs s390x 0:6.6-2.fc45 fedora 1.0 MiB nettle s390x 0:3.10.1-3.fc44 fedora 837.4 KiB ngtcp2 s390x 0:1.22.1-1.fc45 fedora 316.9 KiB ngtcp2-crypto-ossl s390x 0:1.22.1-1.fc45 fedora 47.2 KiB npth s390x 0:1.8-4.fc44 fedora 45.1 KiB ocaml-srpm-macros noarch 0:11-3.fc44 fedora 1.9 KiB openblas-srpm-macros noarch 0:2-21.fc44 fedora 112.0 B openldap s390x 0:2.6.13-1.fc45 fedora 675.3 KiB openssl-libs s390x 1:3.5.7-1.fc45 fedora 7.4 MiB p11-kit s390x 0:0.26.2-1.fc45 fedora 2.9 MiB p11-kit-trust s390x 0:0.26.2-1.fc45 fedora 573.5 KiB package-notes-srpm-macros noarch 0:0.19-1.fc45 fedora 1.6 KiB pam-libs s390x 0:1.7.2-1.fc44 fedora 121.8 KiB pcre2 s390x 0:10.47-1.fc44.1 fedora 729.9 KiB pcre2-syntax noarch 0:10.47-1.fc44.1 fedora 281.9 KiB perl-srpm-macros noarch 0:1-61.fc44 fedora 861.0 B pkgconf s390x 0:2.5.1-1.fc45 fedora 92.5 KiB pkgconf-m4 noarch 0:2.5.1-1.fc45 fedora 14.3 KiB pkgconf-pkg-config s390x 0:2.5.1-1.fc45 fedora 988.0 B policycoreutils s390x 0:3.10-5.fc45 fedora 865.9 KiB popt s390x 0:1.19-10.fc44 fedora 140.4 KiB publicsuffix-list-dafsa noarch 0:20260116-1.fc44 fedora 70.4 KiB pyproject-srpm-macros noarch 0:1.22.2-1.fc45 fedora 3.2 KiB python-srpm-macros noarch 0:3.15-1.fc45 fedora 51.6 KiB qt5-srpm-macros noarch 0:5.15.18-2.fc44 fedora 500.0 B qt6-srpm-macros noarch 0:6.11.1-1.fc45 fedora 472.0 B readline s390x 0:8.3-4.fc44 fedora 575.1 KiB redhat-systemd-presets noarch 0:102-2.fc45 fedora 1.0 KiB redhat-systemd-presets-common noarch 0:102-2.fc45 fedora 16.9 KiB rpm s390x 0:6.0.1-6.fc45 fedora 3.1 MiB rpm-build-libs s390x 0:6.0.1-6.fc45 fedora 271.8 KiB rpm-libs s390x 0:6.0.1-6.fc45 fedora 1.0 MiB rpm-plugin-selinux s390x 0:6.0.1-6.fc45 fedora 11.6 KiB rpm-sequoia s390x 0:1.10.2-2.fc45 fedora 2.5 MiB rpm-sign-libs s390x 0:6.0.1-6.fc45 fedora 35.4 KiB rust-srpm-macros noarch 0:28.4-3.fc44 fedora 5.5 KiB selinux-policy noarch 0:45.5-1.fc45 fedora 32.1 KiB selinux-policy-targeted noarch 0:45.5-1.fc45 fedora 18.9 MiB setup noarch 0:2.15.0-29.fc45 fedora 724.9 KiB sqlite-libs s390x 0:3.53.2-1.fc45 fedora 1.7 MiB systemd-libs s390x 0:261~rc3-3.fc45 fedora 2.7 MiB systemd-standalone-sysusers s390x 0:261~rc3-3.fc45 fedora 938.1 KiB tpm2-tss s390x 0:4.1.3-9.fc44 fedora 1.6 MiB tree-sitter-srpm-macros noarch 0:0.4.6-1.fc45 fedora 8.6 KiB util-linux-core s390x 0:2.42.2-1.fc45 fedora 1.5 MiB xxhash-libs s390x 0:0.8.3-4.fc44 fedora 65.6 KiB xz-libs s390x 1:5.8.3-1.fc45 fedora 221.2 KiB zig-srpm-macros noarch 0:1-8.fc44 fedora 1.3 KiB zip s390x 0:3.0-45.fc44 fedora 729.1 KiB zlib-ng-compat s390x 0:2.3.3-5.fc45 fedora 125.1 KiB zstd s390x 0:1.5.7-5.fc44 fedora 509.6 KiB Installing groups: Buildsystem building group Transaction Summary: Installing: 187 packages Total size of inbound packages is 70 MiB. Need to download 70 MiB. After this operation, 228 MiB extra will be used (install 228 MiB, remove 0 B). [ 1/187] bzip2-0:1.0.8-23.fc44.s390x 100% | 153.4 KiB/s | 52.6 KiB | 00m00s [ 2/187] coreutils-0:9.11-3.fc45.s390x 100% | 1.2 MiB/s | 1.2 MiB | 00m01s [ 3/187] cpio-0:2.15-9.fc44.s390x 100% | 415.3 KiB/s | 297.4 KiB | 00m01s [ 4/187] bash-0:5.3.9-3.fc44.s390x 100% | 1.7 MiB/s | 1.9 MiB | 00m01s [ 5/187] diffutils-0:3.12-5.fc44.s390x 100% | 1.9 MiB/s | 404.9 KiB | 00m00s [ 6/187] fedora-release-common-0:45-0. 100% | 119.3 KiB/s | 18.6 KiB | 00m00s [ 7/187] findutils-1:4.10.0-7.fc44.s39 100% | 3.0 MiB/s | 554.7 KiB | 00m00s [ 8/187] gawk-0:5.4.0-3.fc45.s390x 100% | 5.6 MiB/s | 1.2 MiB | 00m00s [ 9/187] glibc-minimal-langpack-0:2.43 100% | 573.8 KiB/s | 107.9 KiB | 00m00s [ 10/187] grep-0:3.12-3.fc44.s390x 100% | 1.1 MiB/s | 304.3 KiB | 00m00s [ 11/187] gzip-0:1.14-2.fc44.s390x 100% | 1.0 MiB/s | 178.7 KiB | 00m00s [ 12/187] info-0:7.3-2.fc45.s390x 100% | 1.1 MiB/s | 197.4 KiB | 00m00s [ 13/187] patch-0:2.8-4.fc44.s390x 100% | 668.4 KiB/s | 122.3 KiB | 00m00s [ 14/187] redhat-rpm-config-0:344-2.fc4 100% | 433.6 KiB/s | 78.0 KiB | 00m00s [ 15/187] rpm-build-0:6.0.1-6.fc45.s390 100% | 781.4 KiB/s | 141.4 KiB | 00m00s [ 16/187] sed-0:4.10-1.fc45.s390x 100% | 1.6 MiB/s | 362.2 KiB | 00m00s [ 17/187] shadow-utils-2:4.19.3-3.fc45. 100% | 6.1 MiB/s | 1.4 MiB | 00m00s [ 18/187] tar-2:1.35-8.fc44.s390x 100% | 3.4 MiB/s | 876.3 KiB | 00m00s [ 19/187] unzip-0:6.0-69.fc44.s390x 100% | 1.1 MiB/s | 205.6 KiB | 00m00s [ 20/187] which-0:2.25-1.fc45.s390x 100% | 268.4 KiB/s | 43.2 KiB | 00m00s [ 21/187] util-linux-0:2.42.2-1.fc45.s3 100% | 5.6 MiB/s | 1.2 MiB | 00m00s [ 22/187] xz-1:5.8.3-1.fc45.s390x 100% | 3.2 MiB/s | 656.1 KiB | 00m00s [ 23/187] filesystem-0:3.18-58.fc45.s39 100% | 7.7 MiB/s | 1.8 MiB | 00m00s [ 24/187] glibc-0:2.43.9000-20.fc45.s39 100% | 7.5 MiB/s | 2.0 MiB | 00m00s [ 25/187] ncurses-libs-0:6.6-2.fc45.s39 100% | 2.1 MiB/s | 358.0 KiB | 00m00s [ 26/187] bzip2-libs-0:1.0.8-23.fc44.s3 100% | 305.3 KiB/s | 47.9 KiB | 00m00s [ 27/187] gmp-1:6.3.0-5.fc44.s390x 100% | 2.0 MiB/s | 329.2 KiB | 00m00s [ 28/187] coreutils-common-0:9.11-3.fc4 100% | 10.8 MiB/s | 2.2 MiB | 00m00s [ 29/187] libacl-0:2.3.2-7.fc45.s390x 100% | 157.2 KiB/s | 24.5 KiB | 00m00s [ 30/187] libattr-0:2.5.2-9.fc45.s390x 100% | 112.6 KiB/s | 17.8 KiB | 00m00s [ 31/187] libcap-0:2.78-1.fc45.s390x 100% | 581.6 KiB/s | 90.7 KiB | 00m00s [ 32/187] libselinux-0:3.10-2.fc45.s390 100% | 630.6 KiB/s | 101.5 KiB | 00m00s [ 33/187] openssl-libs-1:3.5.7-1.fc45.s 100% | 12.7 MiB/s | 2.4 MiB | 00m00s [ 34/187] systemd-libs-0:261~rc3-3.fc45 100% | 4.8 MiB/s | 913.5 KiB | 00m00s [ 35/187] fedora-repos-0:45-0.1.noarch 100% | 59.5 KiB/s | 9.2 KiB | 00m00s [ 36/187] redhat-systemd-presets-0:102- 100% | 53.2 KiB/s | 8.4 KiB | 00m00s [ 37/187] mpfr-0:4.2.2-3.fc44.s390x 100% | 1.8 MiB/s | 299.8 KiB | 00m00s [ 38/187] readline-0:8.3-4.fc44.s390x 100% | 1.5 MiB/s | 241.2 KiB | 00m00s [ 39/187] glibc-common-0:2.43.9000-20.f 100% | 2.5 MiB/s | 413.2 KiB | 00m00s [ 40/187] pcre2-0:10.47-1.fc44.1.s390x 100% | 1.8 MiB/s | 292.7 KiB | 00m00s [ 41/187] ed-0:1.22.5-2.fc45.s390x 100% | 543.9 KiB/s | 85.4 KiB | 00m00s [ 42/187] R-srpm-macros-0:1.3.7-2.fc45. 100% | 70.6 KiB/s | 11.0 KiB | 00m00s [ 43/187] ansible-srpm-macros-0:1-20.1. 100% | 128.9 KiB/s | 20.1 KiB | 00m00s [ 44/187] build-reproducibility-srpm-ma 100% | 86.1 KiB/s | 13.3 KiB | 00m00s [ 45/187] cmake-srpm-macros-0:4.3.0-3.f 100% | 64.6 KiB/s | 10.2 KiB | 00m00s [ 46/187] dwz-0:0.16-3.fc44.s390x 100% | 903.4 KiB/s | 143.6 KiB | 00m00s [ 47/187] efi-srpm-macros-0:6-6.fc44.no 100% | 145.5 KiB/s | 22.6 KiB | 00m00s [ 48/187] erlang-srpm-macros-0:0.3.11-1 100% | 64.2 KiB/s | 10.0 KiB | 00m00s [ 49/187] filesystem-srpm-macros-0:3.18 100% | 172.9 KiB/s | 27.0 KiB | 00m00s [ 50/187] file-0:5.47-3.fc45.s390x 100% | 270.7 KiB/s | 49.5 KiB | 00m00s [ 51/187] fonts-srpm-macros-1:5.0.0-3.f 100% | 174.5 KiB/s | 27.2 KiB | 00m00s [ 52/187] forge-srpm-macros-0:0.4.0-4.f 100% | 128.9 KiB/s | 20.0 KiB | 00m00s [ 53/187] fpc-srpm-macros-0:1.3-16.fc44 100% | 51.2 KiB/s | 7.9 KiB | 00m00s [ 54/187] gap-srpm-macros-0:2-2.fc44.no 100% | 59.0 KiB/s | 9.1 KiB | 00m00s [ 55/187] ghc-srpm-macros-0:1.10-1.fc44 100% | 56.7 KiB/s | 8.8 KiB | 00m00s [ 56/187] gnat-srpm-macros-0:7-2.fc44.n 100% | 56.4 KiB/s | 8.7 KiB | 00m00s [ 57/187] gnome-srpm-macros-0:1.0-1.fc4 100% | 54.8 KiB/s | 8.6 KiB | 00m00s [ 58/187] go-srpm-macros-0:3.8.0-2.fc44 100% | 178.6 KiB/s | 28.2 KiB | 00m00s [ 59/187] java-srpm-macros-0:1-8.fc44.n 100% | 52.0 KiB/s | 8.1 KiB | 00m00s [ 60/187] kernel-srpm-macros-0:1.0-29.f 100% | 52.3 KiB/s | 8.2 KiB | 00m00s [ 61/187] lua-srpm-macros-0:1-17.fc44.n 100% | 56.9 KiB/s | 8.9 KiB | 00m00s [ 62/187] ocaml-srpm-macros-0:11-3.fc44 100% | 59.5 KiB/s | 9.3 KiB | 00m00s [ 63/187] openblas-srpm-macros-0:2-21.f 100% | 50.0 KiB/s | 7.8 KiB | 00m00s [ 64/187] package-notes-srpm-macros-0:0 100% | 65.4 KiB/s | 10.1 KiB | 00m00s [ 65/187] perl-srpm-macros-0:1-61.fc44. 100% | 54.0 KiB/s | 8.4 KiB | 00m00s [ 66/187] pyproject-srpm-macros-0:1.22. 100% | 99.9 KiB/s | 15.5 KiB | 00m00s [ 67/187] python-srpm-macros-0:3.15-1.f 100% | 154.5 KiB/s | 24.0 KiB | 00m00s [ 68/187] qt5-srpm-macros-0:5.15.18-2.f 100% | 56.0 KiB/s | 8.7 KiB | 00m00s [ 69/187] qt6-srpm-macros-0:6.11.1-1.fc 100% | 59.4 KiB/s | 9.2 KiB | 00m00s [ 70/187] rpm-0:6.0.1-6.fc45.s390x 100% | 3.5 MiB/s | 579.5 KiB | 00m00s [ 71/187] rust-srpm-macros-0:28.4-3.fc4 100% | 70.9 KiB/s | 11.1 KiB | 00m00s [ 72/187] tree-sitter-srpm-macros-0:0.4 100% | 89.8 KiB/s | 13.9 KiB | 00m00s [ 73/187] zig-srpm-macros-0:1-8.fc44.no 100% | 56.8 KiB/s | 8.8 KiB | 00m00s [ 74/187] zip-0:3.0-45.fc44.s390x 100% | 1.7 MiB/s | 281.3 KiB | 00m00s [ 75/187] binutils-0:2.46.50-10.fc45.s3 100% | 26.8 MiB/s | 6.4 MiB | 00m00s [ 76/187] debugedit-0:5.3-2.fc45.s390x 100% | 434.5 KiB/s | 90.4 KiB | 00m00s [ 77/187] elfutils-0:0.195-1.fc45.s390x 100% | 2.9 MiB/s | 599.8 KiB | 00m00s [ 78/187] elfutils-libelf-0:0.195-1.fc4 100% | 1.3 MiB/s | 213.9 KiB | 00m00s [ 79/187] libgcc-0:16.1.1-2.fc45.s390x 100% | 700.5 KiB/s | 110.0 KiB | 00m00s [ 80/187] libarchive-0:3.8.7-1.fc45.s39 100% | 2.7 MiB/s | 456.6 KiB | 00m00s [ 81/187] pkgconf-pkg-config-0:2.5.1-1. 100% | 58.6 KiB/s | 9.4 KiB | 00m00s [ 82/187] libstdc++-0:16.1.1-2.fc45.s39 100% | 6.3 MiB/s | 1.1 MiB | 00m00s [ 83/187] popt-0:1.19-10.fc44.s390x 100% | 378.8 KiB/s | 67.8 KiB | 00m00s [ 84/187] rpm-build-libs-0:6.0.1-6.fc45 100% | 809.6 KiB/s | 127.1 KiB | 00m00s [ 85/187] rpm-libs-0:6.0.1-6.fc45.s390x 100% | 2.4 MiB/s | 407.1 KiB | 00m00s [ 86/187] zstd-0:1.5.7-5.fc44.s390x 100% | 1.2 MiB/s | 195.5 KiB | 00m00s [ 87/187] audit-libs-0:4.1.4-2.fc45.s39 100% | 896.1 KiB/s | 140.7 KiB | 00m00s [ 88/187] libeconf-0:0.7.9-3.fc44.s390x 100% | 233.1 KiB/s | 36.4 KiB | 00m00s [ 89/187] libsemanage-0:3.10-2.fc45.s39 100% | 792.4 KiB/s | 123.6 KiB | 00m00s [ 90/187] libxcrypt-0:4.5.2-3.fc44.s390 100% | 848.1 KiB/s | 133.1 KiB | 00m00s [ 91/187] pam-libs-0:1.7.2-1.fc44.s390x 100% | 370.8 KiB/s | 57.8 KiB | 00m00s [ 92/187] setup-0:2.15.0-29.fc45.noarch 100% | 1.0 MiB/s | 157.3 KiB | 00m00s [ 93/187] libblkid-0:2.42.2-1.fc45.s390 100% | 849.4 KiB/s | 133.4 KiB | 00m00s [ 94/187] libcap-ng-0:0.9.3-2.fc45.s390 100% | 191.2 KiB/s | 34.8 KiB | 00m00s [ 95/187] libfdisk-0:2.42.2-1.fc45.s390 100% | 849.8 KiB/s | 165.7 KiB | 00m00s [ 96/187] liblastlog2-0:2.42.2-1.fc45.s 100% | 150.2 KiB/s | 23.4 KiB | 00m00s [ 97/187] libmount-0:2.42.2-1.fc45.s390 100% | 1.1 MiB/s | 169.2 KiB | 00m00s [ 98/187] libsmartcols-0:2.42.2-1.fc45. 100% | 559.0 KiB/s | 87.2 KiB | 00m00s [ 99/187] libuuid-0:2.42.2-1.fc45.s390x 100% | 174.8 KiB/s | 27.3 KiB | 00m00s [100/187] util-linux-core-0:2.42.2-1.fc 100% | 3.5 MiB/s | 580.3 KiB | 00m00s [101/187] zlib-ng-compat-0:2.3.3-5.fc45 100% | 478.1 KiB/s | 75.5 KiB | 00m00s [102/187] xz-libs-1:5.8.3-1.fc45.s390x 100% | 750.5 KiB/s | 117.8 KiB | 00m00s [103/187] glibc-gconv-extra-0:2.43.9000 100% | 9.8 MiB/s | 1.7 MiB | 00m00s [104/187] ncurses-base-0:6.6-2.fc45.noa 100% | 561.2 KiB/s | 88.1 KiB | 00m00s [105/187] gnulib-l10n-0:20241231-3.fc45 100% | 957.9 KiB/s | 150.4 KiB | 00m00s [106/187] libsepol-0:3.10-1.fc44.s390x 100% | 2.2 MiB/s | 351.6 KiB | 00m00s [107/187] ca-certificates-0:2025.2.80_v 100% | 5.7 MiB/s | 968.8 KiB | 00m00s [108/187] crypto-policies-0:20260331-1. 100% | 623.6 KiB/s | 97.3 KiB | 00m00s [109/187] fedora-gpg-keys-0:45-0.1.noar 100% | 905.9 KiB/s | 141.3 KiB | 00m00s [110/187] fedora-repos-rawhide-0:45-0.1 100% | 49.7 KiB/s | 8.8 KiB | 00m00s [111/187] redhat-systemd-presets-common 100% | 84.5 KiB/s | 13.1 KiB | 00m00s [112/187] pcre2-syntax-0:10.47-1.fc44.1 100% | 1.0 MiB/s | 164.7 KiB | 00m00s [113/187] add-determinism-0:0.7.3-2.fc4 100% | 4.9 MiB/s | 886.0 KiB | 00m00s [114/187] linkdupes-0:0.7.3-2.fc45.s390 100% | 2.3 MiB/s | 376.8 KiB | 00m00s [115/187] file-libs-0:5.47-3.fc45.s390x 100% | 5.2 MiB/s | 872.9 KiB | 00m00s [116/187] curl-0:8.21.0~rc2-1.fc45.s390 100% | 1.5 MiB/s | 246.1 KiB | 00m00s [117/187] alternatives-0:1.33-5.fc44.s3 100% | 264.4 KiB/s | 41.5 KiB | 00m00s [118/187] elfutils-debuginfod-client-0: 100% | 299.9 KiB/s | 46.8 KiB | 00m00s [119/187] jansson-0:2.14-4.fc44.s390x 100% | 291.0 KiB/s | 45.4 KiB | 00m00s [120/187] libzstd-0:1.5.7-5.fc44.s390x 100% | 2.4 MiB/s | 402.3 KiB | 00m00s [121/187] elfutils-libs-0:0.195-1.fc45. 100% | 1.8 MiB/s | 290.6 KiB | 00m00s [122/187] libxml2-0:2.13.9-2.fc45.s390x 100% | 4.1 MiB/s | 696.6 KiB | 00m00s [123/187] lz4-libs-0:1.10.0-4.fc44.s390 100% | 613.3 KiB/s | 96.3 KiB | 00m00s [124/187] pkgconf-0:2.5.1-1.fc45.s390x 100% | 316.7 KiB/s | 49.1 KiB | 00m00s [125/187] pkgconf-m4-0:2.5.1-1.fc45.noa 100% | 88.2 KiB/s | 13.8 KiB | 00m00s [126/187] libgomp-0:16.1.1-2.fc45.s390x 100% | 2.4 MiB/s | 387.8 KiB | 00m00s [127/187] lua-libs-0:5.5.0-1.fc45.s390x 100% | 963.1 KiB/s | 151.2 KiB | 00m00s [128/187] rpm-sign-libs-0:6.0.1-6.fc45. 100% | 171.9 KiB/s | 26.7 KiB | 00m00s [129/187] rpm-sequoia-0:1.10.2-2.fc45.s 100% | 5.4 MiB/s | 912.7 KiB | 00m00s [130/187] sqlite-libs-0:3.53.2-1.fc45.s 100% | 4.6 MiB/s | 829.1 KiB | 00m00s [131/187] libffi-0:3.5.2-2.fc44.s390x 100% | 252.0 KiB/s | 39.1 KiB | 00m00s [132/187] p11-kit-0:0.26.2-1.fc45.s390x 100% | 3.4 MiB/s | 585.3 KiB | 00m00s [133/187] p11-kit-trust-0:0.26.2-1.fc45 100% | 979.9 KiB/s | 153.8 KiB | 00m00s [134/187] json-c-0:0.18-8.fc44.s390x 100% | 289.8 KiB/s | 44.9 KiB | 00m00s [135/187] libpkgconf-0:2.5.1-1.fc45.s39 100% | 271.5 KiB/s | 42.6 KiB | 00m00s [136/187] gnupg2-0:2.4.9-16.fc45.s390x 100% | 9.6 MiB/s | 1.7 MiB | 00m00s [137/187] ima-evm-utils-libs-0:1.6.2-10 100% | 190.2 KiB/s | 29.7 KiB | 00m00s [138/187] libfsverity-0:1.7-1.fc45.s390 100% | 119.0 KiB/s | 18.4 KiB | 00m00s [139/187] gpgverify-0:2.2-4.fc44.noarch 100% | 72.4 KiB/s | 11.2 KiB | 00m00s [140/187] libtasn1-0:4.21.0-1.fc45.s390 100% | 439.5 KiB/s | 77.8 KiB | 00m00s [141/187] gnupg2-dirmngr-0:2.4.9-16.fc4 100% | 1.8 MiB/s | 285.2 KiB | 00m00s [142/187] gnupg2-gpg-agent-0:2.4.9-16.f 100% | 1.8 MiB/s | 285.6 KiB | 00m00s [143/187] gnupg2-gpgconf-0:2.4.9-16.fc4 100% | 782.1 KiB/s | 122.0 KiB | 00m00s [144/187] gnupg2-keyboxd-0:2.4.9-16.fc4 100% | 624.2 KiB/s | 98.0 KiB | 00m00s [145/187] gnupg2-verify-0:2.4.9-16.fc45 100% | 1.1 MiB/s | 174.5 KiB | 00m00s [146/187] libassuan-0:2.5.7-5.fc44.s390 100% | 427.8 KiB/s | 67.6 KiB | 00m00s [147/187] libgcrypt-0:1.12.2-1.fc45.s39 100% | 3.6 MiB/s | 590.2 KiB | 00m00s [148/187] npth-0:1.8-4.fc44.s390x 100% | 159.5 KiB/s | 24.9 KiB | 00m00s [149/187] libgpg-error-0:1.61-1.fc45.s3 100% | 1.4 MiB/s | 253.7 KiB | 00m00s [150/187] tpm2-tss-0:4.1.3-9.fc44.s390x 100% | 2.6 MiB/s | 427.0 KiB | 00m00s [151/187] gnutls-0:3.8.13-1.fc45.s390x 100% | 7.9 MiB/s | 1.3 MiB | 00m00s [152/187] libksba-0:1.8.0-1.fc45.s390x 100% | 1.0 MiB/s | 167.1 KiB | 00m00s [153/187] openldap-0:2.6.13-1.fc45.s390 100% | 1.6 MiB/s | 263.8 KiB | 00m00s [154/187] libusb1-0:1.0.30-1.fc45.s390x 100% | 506.0 KiB/s | 79.4 KiB | 00m00s [155/187] libidn2-0:2.3.8-3.fc44.s390x 100% | 1.1 MiB/s | 176.9 KiB | 00m00s [156/187] libunistring-0:1.1-11.fc44.s3 100% | 3.4 MiB/s | 555.6 KiB | 00m00s [157/187] nettle-0:3.10.1-3.fc44.s390x 100% | 2.7 MiB/s | 455.1 KiB | 00m00s [158/187] cyrus-sasl-lib-0:2.1.28-35.fc 100% | 4.6 MiB/s | 818.6 KiB | 00m00s [159/187] libevent-0:2.1.12-17.fc44.s39 100% | 1.7 MiB/s | 282.1 KiB | 00m00s [160/187] libtool-ltdl-0:2.5.4-10.fc44. 100% | 237.0 KiB/s | 36.7 KiB | 00m00s [161/187] gdbm-libs-1:1.23-11.fc44.s390 100% | 371.0 KiB/s | 57.9 KiB | 00m00s [162/187] fedora-release-0:45-0.8.noarc 100% | 81.7 KiB/s | 12.7 KiB | 00m00s [163/187] systemd-standalone-sysusers-0 100% | 2.5 MiB/s | 404.1 KiB | 00m00s [164/187] xxhash-libs-0:0.8.3-4.fc44.s3 100% | 236.9 KiB/s | 36.7 KiB | 00m00s [165/187] gdb-minimal-0:17.1-10.fc45.s3 100% | 19.9 MiB/s | 4.8 MiB | 00m00s [166/187] fedora-release-identity-basic 100% | 86.6 KiB/s | 13.4 KiB | 00m00s [167/187] libcurl-0:8.21.0~rc2-1.fc45.s 100% | 2.8 MiB/s | 469.8 KiB | 00m00s [168/187] krb5-libs-0:1.22.2-7.fc45.s39 100% | 4.7 MiB/s | 793.7 KiB | 00m00s [169/187] libbrotli-0:1.2.0-4.fc45.s390 100% | 2.3 MiB/s | 379.4 KiB | 00m00s [170/187] libnghttp2-0:1.69.0-1.fc45.s3 100% | 492.4 KiB/s | 76.8 KiB | 00m00s [171/187] libnghttp3-0:1.16.0-1.fc45.s3 100% | 451.4 KiB/s | 70.4 KiB | 00m00s [172/187] libpsl-0:0.21.5-7.fc44.s390x 100% | 417.3 KiB/s | 65.1 KiB | 00m00s [173/187] libssh-0:0.12.0-1.fc45.s390x 100% | 1.7 MiB/s | 277.5 KiB | 00m00s [174/187] ngtcp2-0:1.22.1-1.fc45.s390x 100% | 975.1 KiB/s | 152.1 KiB | 00m00s [175/187] ngtcp2-crypto-ossl-0:1.22.1-1 100% | 165.6 KiB/s | 25.7 KiB | 00m00s [176/187] keyutils-libs-0:1.6.3-7.fc44. 100% | 195.3 KiB/s | 31.1 KiB | 00m00s [177/187] libcom_err-0:1.47.4-1.fc45.s3 100% | 170.4 KiB/s | 26.6 KiB | 00m00s [178/187] libverto-0:0.3.2-12.fc44.s390 100% | 132.8 KiB/s | 20.6 KiB | 00m00s [179/187] publicsuffix-list-dafsa-0:202 100% | 386.4 KiB/s | 60.3 KiB | 00m00s [180/187] libfido2-0:1.17.0-2.fc45.s390 100% | 619.4 KiB/s | 96.6 KiB | 00m00s [181/187] libssh-config-0:0.12.0-1.fc45 100% | 60.4 KiB/s | 9.4 KiB | 00m00s [182/187] libcbor-0:0.14.0-2.fc45.s390x 100% | 228.6 KiB/s | 35.7 KiB | 00m00s [183/187] selinux-policy-targeted-0:45. 100% | 31.4 MiB/s | 6.8 MiB | 00m00s [184/187] policycoreutils-0:3.10-5.fc45 100% | 1.6 MiB/s | 262.3 KiB | 00m00s [185/187] selinux-policy-0:45.5-1.fc45. 100% | 477.3 KiB/s | 74.5 KiB | 00m00s [186/187] libselinux-utils-0:3.10-2.fc4 100% | 783.5 KiB/s | 123.0 KiB | 00m00s [187/187] rpm-plugin-selinux-0:6.0.1-6. 100% | 115.5 KiB/s | 18.1 KiB | 00m00s -------------------------------------------------------------------------------- [187/187] Total 100% | 6.0 MiB/s | 70.2 MiB | 00m12s Running transaction Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x91211FCE: UserID : "Fedora (46) " Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary The key was successfully imported. [ 1/189] Verify package files 100% | 1.0 KiB/s | 187.0 B | 00m00s [ 2/189] Prepare transaction 100% | 2.4 KiB/s | 187.0 B | 00m00s [ 3/189] Installing libgcc-0:16.1.1-2. 100% | 210.3 MiB/s | 215.3 KiB | 00m00s [ 4/189] Installing redhat-systemd-pre 100% | 0.0 B/s | 1.5 KiB | 00m00s [ 5/189] Installing redhat-systemd-pre 100% | 0.0 B/s | 18.1 KiB | 00m00s [ 6/189] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 7/189] Installing publicsuffix-list- 100% | 0.0 B/s | 71.1 KiB | 00m00s [ 8/189] Installing fedora-release-ide 100% | 0.0 B/s | 920.0 B | 00m00s [ 9/189] Installing fedora-gpg-keys-0: 100% | 35.6 MiB/s | 182.1 KiB | 00m00s [ 10/189] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 11/189] Installing fedora-repos-0:45- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 12/189] Installing fedora-release-com 100% | 7.3 MiB/s | 7.4 KiB | 00m00s [ 13/189] Installing fedora-release-0:4 100% | 20.2 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-29.fc45.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-29.fc45.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 14/189] Installing setup-0:2.15.0-29. 100% | 29.7 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 15/189] Installing filesystem-0:3.18- 100% | 1.9 MiB/s | 253.6 KiB | 00m00s [ 16/189] Installing pkgconf-m4-0:2.5.1 100% | 0.0 B/s | 14.7 KiB | 00m00s [ 17/189] Installing pcre2-syntax-0:10. 100% | 277.7 MiB/s | 284.3 KiB | 00m00s [ 18/189] Installing gnulib-l10n-0:2024 100% | 161.6 MiB/s | 661.9 KiB | 00m00s [ 19/189] Installing coreutils-common-0 100% | 281.0 MiB/s | 11.0 MiB | 00m00s [ 20/189] Installing ncurses-base-0:6.6 100% | 86.7 MiB/s | 355.3 KiB | 00m00s [ 21/189] Installing bash-0:5.3.9-3.fc4 100% | 159.9 MiB/s | 8.6 MiB | 00m00s [ 22/189] Installing glibc-common-0:2.4 100% | 35.0 MiB/s | 1.1 MiB | 00m00s [ 23/189] Installing glibc-gconv-extra- 100% | 214.4 MiB/s | 6.9 MiB | 00m00s [ 24/189] Installing glibc-0:2.43.9000- 100% | 94.5 MiB/s | 5.4 MiB | 00m00s [ 25/189] Installing ncurses-libs-0:6.6 100% | 201.7 MiB/s | 1.0 MiB | 00m00s [ 26/189] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 27/189] Installing zlib-ng-compat-0:2 100% | 123.0 MiB/s | 125.9 KiB | 00m00s [ 28/189] Installing bzip2-libs-0:1.0.8 100% | 83.4 MiB/s | 85.4 KiB | 00m00s [ 29/189] Installing libgpg-error-0:1.6 100% | 32.4 MiB/s | 963.3 KiB | 00m00s [ 30/189] Installing libstdc++-0:16.1.1 100% | 259.6 MiB/s | 3.4 MiB | 00m00s [ 31/189] Installing libassuan-0:2.5.7- 100% | 161.5 MiB/s | 165.4 KiB | 00m00s [ 32/189] Installing libgcrypt-0:1.12.2 100% | 260.9 MiB/s | 1.3 MiB | 00m00s [ 33/189] Installing readline-0:8.3-4.f 100% | 281.8 MiB/s | 577.2 KiB | 00m00s [ 34/189] Installing gmp-1:6.3.0-5.fc44 100% | 189.5 MiB/s | 776.0 KiB | 00m00s [ 35/189] Installing systemd-libs-0:261 100% | 225.7 MiB/s | 2.7 MiB | 00m00s [ 36/189] Installing libuuid-0:2.42.2-1 100% | 0.0 B/s | 34.0 KiB | 00m00s [ 37/189] Installing xz-libs-1:5.8.3-1. 100% | 217.1 MiB/s | 222.3 KiB | 00m00s [ 38/189] Installing libzstd-0:1.5.7-5. 100% | 257.2 MiB/s | 1.0 MiB | 00m00s [ 39/189] Installing elfutils-libelf-0: 100% | 292.3 MiB/s | 1.2 MiB | 00m00s [ 40/189] Installing popt-0:1.19-10.fc4 100% | 71.8 MiB/s | 147.0 KiB | 00m00s [ 41/189] Installing npth-0:1.8-4.fc44. 100% | 0.0 B/s | 46.2 KiB | 00m00s [ 42/189] Installing elfutils-libs-0:0. 100% | 191.4 MiB/s | 783.8 KiB | 00m00s [ 43/189] Installing libblkid-0:2.42.2- 100% | 288.3 MiB/s | 295.2 KiB | 00m00s [ 44/189] Installing libattr-0:2.5.2-9. 100% | 0.0 B/s | 25.0 KiB | 00m00s [ 45/189] Installing libacl-0:2.3.2-7.f 100% | 0.0 B/s | 36.4 KiB | 00m00s [ 46/189] Installing libsepol-0:3.10-1. 100% | 211.6 MiB/s | 866.9 KiB | 00m00s [ 47/189] Installing sqlite-libs-0:3.53 100% | 215.6 MiB/s | 1.7 MiB | 00m00s [ 48/189] Installing gnupg2-gpgconf-0:2 100% | 10.0 MiB/s | 275.2 KiB | 00m00s [ 49/189] Installing pcre2-0:10.47-1.fc 100% | 238.1 MiB/s | 731.3 KiB | 00m00s [ 50/189] Installing libselinux-0:3.10- 100% | 205.2 MiB/s | 210.1 KiB | 00m00s [ 51/189] Installing grep-0:3.12-3.fc44 100% | 33.8 MiB/s | 1.0 MiB | 00m00s [ 52/189] Installing sed-0:4.10-1.fc45. 100% | 31.1 MiB/s | 955.5 KiB | 00m00s [ 53/189] Installing findutils-1:4.10.0 100% | 58.8 MiB/s | 1.9 MiB | 00m00s [ 54/189] Installing libxcrypt-0:4.5.2- 100% | 142.4 MiB/s | 291.7 KiB | 00m00s [ 55/189] Installing libtasn1-0:4.21.0- 100% | 181.9 MiB/s | 186.2 KiB | 00m00s [ 56/189] Installing libunistring-0:1.1 100% | 252.7 MiB/s | 1.8 MiB | 00m00s [ 57/189] Installing libidn2-0:2.3.8-3. 100% | 69.1 MiB/s | 566.3 KiB | 00m00s [ 58/189] Installing crypto-policies-0: 100% | 30.9 MiB/s | 158.3 KiB | 00m00s [ 59/189] Installing xz-1:5.8.3-1.fc45. 100% | 42.6 MiB/s | 1.4 MiB | 00m00s [ 60/189] Installing libmount-0:2.42.2- 100% | 197.9 MiB/s | 405.2 KiB | 00m00s [ 61/189] Installing gnupg2-verify-0:2. 100% | 13.2 MiB/s | 365.4 KiB | 00m00s [ 62/189] Installing dwz-0:0.16-3.fc44. 100% | 11.6 MiB/s | 307.6 KiB | 00m00s [ 63/189] Installing mpfr-0:4.2.2-3.fc4 100% | 228.2 MiB/s | 701.0 KiB | 00m00s [ 64/189] Installing gawk-0:5.4.0-3.fc4 100% | 66.0 MiB/s | 2.2 MiB | 00m00s [ 65/189] Installing libksba-0:1.8.0-1. 100% | 209.7 MiB/s | 429.5 KiB | 00m00s [ 66/189] Installing unzip-0:6.0-69.fc4 100% | 15.8 MiB/s | 436.5 KiB | 00m00s [ 67/189] Installing file-libs-0:5.47-3 100% | 451.5 MiB/s | 12.2 MiB | 00m00s [ 68/189] Installing file-0:5.47-3.fc45 100% | 4.0 MiB/s | 102.4 KiB | 00m00s [ 69/189] Installing diffutils-0:3.12-5 100% | 51.2 MiB/s | 1.6 MiB | 00m00s [ 70/189] Installing libeconf-0:0.7.9-3 100% | 64.7 MiB/s | 66.2 KiB | 00m00s [ 71/189] Installing libcap-ng-0:0.9.3- 100% | 64.6 MiB/s | 66.2 KiB | 00m00s [ 72/189] Installing audit-libs-0:4.1.4 100% | 193.5 MiB/s | 396.3 KiB | 00m00s [ 73/189] Installing pam-libs-0:1.7.2-1 100% | 121.2 MiB/s | 124.1 KiB | 00m00s [ 74/189] Installing libcap-0:2.78-1.fc 100% | 8.1 MiB/s | 215.2 KiB | 00m00s [ 75/189] Installing libsemanage-0:3.10 100% | 153.1 MiB/s | 313.6 KiB | 00m00s [ 76/189] Installing libsmartcols-0:2.4 100% | 192.7 MiB/s | 197.3 KiB | 00m00s [ 77/189] Installing alternatives-0:1.3 100% | 2.5 MiB/s | 63.4 KiB | 00m00s [ 78/189] Installing lua-libs-0:5.5.0-1 100% | 167.6 MiB/s | 343.3 KiB | 00m00s [ 79/189] Installing libffi-0:3.5.2-2.f 100% | 78.8 MiB/s | 80.7 KiB | 00m00s [ 80/189] Installing p11-kit-0:0.26.2-1 100% | 77.2 MiB/s | 2.9 MiB | 00m00s [ 81/189] Installing p11-kit-trust-0:0. 100% | 16.5 MiB/s | 575.3 KiB | 00m00s [ 82/189] Installing json-c-0:0.18-8.fc 100% | 81.6 MiB/s | 83.5 KiB | 00m00s [ 83/189] Installing ngtcp2-0:1.22.1-1. 100% | 155.5 MiB/s | 318.4 KiB | 00m00s [ 84/189] Installing openssl-libs-1:3.5 100% | 230.6 MiB/s | 7.4 MiB | 00m00s [ 85/189] Installing coreutils-0:9.11-3 100% | 118.6 MiB/s | 6.0 MiB | 00m00s [ 86/189] Installing ca-certificates-0: 100% | 1.5 MiB/s | 2.5 MiB | 00m02s [ 87/189] Installing gzip-0:1.14-2.fc44 100% | 13.6 MiB/s | 402.7 KiB | 00m00s [ 88/189] Installing rpm-sequoia-0:1.10 100% | 250.2 MiB/s | 2.5 MiB | 00m00s [ 89/189] Installing libfsverity-0:1.7- 100% | 0.0 B/s | 25.1 KiB | 00m00s [ 90/189] Installing libevent-0:2.1.12- 100% | 240.6 MiB/s | 985.4 KiB | 00m00s [ 91/189] Installing ngtcp2-crypto-ossl 100% | 46.9 MiB/s | 48.1 KiB | 00m00s [ 92/189] Installing util-linux-core-0: 100% | 42.1 MiB/s | 1.5 MiB | 00m00s [ 93/189] Installing liblastlog2-0:2.42 100% | 6.8 MiB/s | 35.1 KiB | 00m00s [ 94/189] Installing zip-0:3.0-45.fc44. 100% | 23.9 MiB/s | 733.0 KiB | 00m00s [ 95/189] Installing gnupg2-keyboxd-0:2 100% | 41.8 MiB/s | 214.2 KiB | 00m00s [ 96/189] Installing libpsl-0:0.21.5-7. 100% | 75.4 MiB/s | 77.2 KiB | 00m00s [ 97/189] Installing tar-2:1.35-8.fc44. 100% | 79.6 MiB/s | 3.0 MiB | 00m00s [ 98/189] Installing linkdupes-0:0.7.3- 100% | 29.9 MiB/s | 917.4 KiB | 00m00s [ 99/189] Installing libselinux-utils-0 100% | 9.9 MiB/s | 283.6 KiB | 00m00s [100/189] Installing libfdisk-0:2.42.2- 100% | 128.8 MiB/s | 395.7 KiB | 00m00s [101/189] Installing util-linux-0:2.42. 100% | 67.6 MiB/s | 3.6 MiB | 00m00s [102/189] Installing policycoreutils-0: 100% | 21.8 MiB/s | 894.4 KiB | 00m00s [103/189] Installing selinux-policy-0:4 100% | 1.8 MiB/s | 34.5 KiB | 00m00s [104/189] Installing selinux-policy-tar 100% | 169.5 MiB/s | 15.1 MiB | 00m00s [105/189] Installing zstd-0:1.5.7-5.fc4 100% | 17.9 MiB/s | 513.2 KiB | 00m00s [106/189] Installing libxml2-0:2.13.9-2 100% | 57.9 MiB/s | 1.9 MiB | 00m00s [107/189] Installing libusb1-0:1.0.30-1 100% | 24.7 MiB/s | 177.1 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.s390x >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.s390x >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [108/189] Installing tpm2-tss-0:4.1.3-9 100% | 200.8 MiB/s | 1.6 MiB | 00m00s [109/189] Installing ima-evm-utils-libs 100% | 56.3 MiB/s | 57.6 KiB | 00m00s [110/189] Installing gnupg2-gpg-agent-0 100% | 19.7 MiB/s | 725.4 KiB | 00m00s [111/189] Installing nettle-0:3.10.1-3. 100% | 205.2 MiB/s | 840.6 KiB | 00m00s [112/189] Installing gnutls-0:3.8.13-1. 100% | 230.4 MiB/s | 3.7 MiB | 00m00s [113/189] Installing bzip2-0:1.0.8-23.f 100% | 3.4 MiB/s | 91.1 KiB | 00m00s [114/189] Installing add-determinism-0: 100% | 68.2 MiB/s | 2.4 MiB | 00m00s [115/189] Installing build-reproducibil 100% | 0.0 B/s | 1.5 KiB | 00m00s [116/189] Installing cpio-0:2.15-9.fc44 100% | 36.0 MiB/s | 1.1 MiB | 00m00s [117/189] Installing ed-0:1.22.5-2.fc45 100% | 5.7 MiB/s | 151.8 KiB | 00m00s [118/189] Installing patch-0:2.8-4.fc44 100% | 8.8 MiB/s | 243.7 KiB | 00m00s [119/189] Installing jansson-0:2.14-4.f 100% | 88.0 MiB/s | 90.1 KiB | 00m00s [120/189] Installing lz4-libs-0:1.10.0- 100% | 193.5 MiB/s | 198.1 KiB | 00m00s [121/189] Installing libarchive-0:3.8.7 100% | 205.7 MiB/s | 1.0 MiB | 00m00s [122/189] Installing libgomp-0:16.1.1-2 100% | 282.3 MiB/s | 578.1 KiB | 00m00s [123/189] Installing libpkgconf-0:2.5.1 100% | 92.6 MiB/s | 94.9 KiB | 00m00s [124/189] Installing pkgconf-0:2.5.1-1. 100% | 3.4 MiB/s | 95.0 KiB | 00m00s [125/189] Installing pkgconf-pkg-config 100% | 70.9 KiB/s | 1.8 KiB | 00m00s [126/189] Installing libtool-ltdl-0:2.5 100% | 69.1 MiB/s | 70.7 KiB | 00m00s [127/189] Installing gdbm-libs-1:1.23-1 100% | 123.9 MiB/s | 126.9 KiB | 00m00s [128/189] Installing cyrus-sasl-lib-0:2 100% | 67.4 MiB/s | 2.4 MiB | 00m00s [129/189] Installing openldap-0:2.6.13- 100% | 165.8 MiB/s | 679.1 KiB | 00m00s [130/189] Installing gnupg2-dirmngr-0:2 100% | 18.5 MiB/s | 663.9 KiB | 00m00s [131/189] Installing gnupg2-0:2.4.9-16. 100% | 124.0 MiB/s | 6.6 MiB | 00m00s [132/189] Installing gpgverify-0:2.2-4. 100% | 0.0 B/s | 9.4 KiB | 00m00s [133/189] Installing systemd-standalone 100% | 31.6 MiB/s | 938.7 KiB | 00m00s [134/189] Installing rpm-libs-0:6.0.1-6 100% | 197.7 MiB/s | 1.0 MiB | 00m00s [135/189] Installing rpm-sign-libs-0:6. 100% | 0.0 B/s | 36.2 KiB | 00m00s [136/189] Installing rpm-build-libs-0:6 100% | 266.2 MiB/s | 272.6 KiB | 00m00s [137/189] Installing xxhash-libs-0:0.8. 100% | 65.4 MiB/s | 67.0 KiB | 00m00s [138/189] Installing libbrotli-0:1.2.0- 100% | 223.3 MiB/s | 914.6 KiB | 00m00s [139/189] Installing libnghttp2-0:1.69. 100% | 170.7 MiB/s | 174.8 KiB | 00m00s [140/189] Installing libnghttp3-0:1.16. 100% | 152.1 MiB/s | 155.8 KiB | 00m00s [141/189] Installing keyutils-libs-0:1. 100% | 50.2 MiB/s | 51.4 KiB | 00m00s [142/189] Installing libcom_err-0:1.47. 100% | 58.5 MiB/s | 59.9 KiB | 00m00s [143/189] Installing libverto-0:0.3.2-1 100% | 26.2 MiB/s | 26.8 KiB | 00m00s [144/189] Installing krb5-libs-0:1.22.2 100% | 206.4 MiB/s | 2.5 MiB | 00m00s [145/189] Installing libcbor-0:0.14.0-2 100% | 82.7 MiB/s | 84.7 KiB | 00m00s [146/189] Installing libfido2-0:1.17.0- 100% | 248.0 MiB/s | 254.0 KiB | 00m00s [147/189] Installing libssh-0:0.12.0-1. 100% | 229.4 MiB/s | 704.7 KiB | 00m00s [148/189] Installing libcurl-0:8.21.0~r 100% | 177.5 MiB/s | 1.1 MiB | 00m00s [149/189] Installing elfutils-debuginfo 100% | 2.7 MiB/s | 77.7 KiB | 00m00s [150/189] Installing binutils-0:2.46.50 100% | 234.6 MiB/s | 29.6 MiB | 00m00s [151/189] Installing elfutils-0:0.195-1 100% | 86.2 MiB/s | 3.0 MiB | 00m00s [152/189] Installing gdb-minimal-0:17.1 100% | 192.0 MiB/s | 15.9 MiB | 00m00s [153/189] Installing debugedit-0:5.3-2. 100% | 8.2 MiB/s | 227.4 KiB | 00m00s [154/189] Installing curl-0:8.21.0~rc2- 100% | 14.3 MiB/s | 511.1 KiB | 00m00s [155/189] Installing rpm-0:6.0.1-6.fc45 100% | 53.0 MiB/s | 2.5 MiB | 00m00s [156/189] Installing cmake-srpm-macros- 100% | 0.0 B/s | 804.0 B | 00m00s [157/189] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [158/189] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [159/189] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [160/189] Installing tree-sitter-srpm-m 100% | 0.0 B/s | 9.6 KiB | 00m00s [161/189] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [162/189] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [163/189] Installing rust-srpm-macros-0 100% | 0.0 B/s | 6.4 KiB | 00m00s [164/189] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 748.0 B | 00m00s [165/189] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [166/189] Installing perl-srpm-macros-0 100% | 159.0 KiB/s | 1.1 KiB | 00m00s [167/189] Installing package-notes-srpm 100% | 0.0 B/s | 2.1 KiB | 00m00s [168/189] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [169/189] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [170/189] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [171/189] Installing gnome-srpm-macros- 100% | 0.0 B/s | 4.1 KiB | 00m00s [172/189] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [173/189] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [174/189] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [175/189] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [176/189] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [177/189] Installing redhat-rpm-config- 100% | 92.7 MiB/s | 189.9 KiB | 00m00s [178/189] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [179/189] Installing rpm-build-0:6.0.1- 100% | 9.8 MiB/s | 289.8 KiB | 00m00s [180/189] Installing erlang-srpm-macros 100% | 0.0 B/s | 2.5 KiB | 00m00s [181/189] Installing pyproject-srpm-mac 100% | 0.0 B/s | 3.8 KiB | 00m00s [182/189] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [183/189] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 63.0 KiB | 00m00s [184/189] Installing R-srpm-macros-0:1. 100% | 0.0 B/s | 4.4 KiB | 00m00s [185/189] Installing python-srpm-macros 100% | 51.7 MiB/s | 52.9 KiB | 00m00s [186/189] Installing rpm-plugin-selinux 100% | 0.0 B/s | 12.6 KiB | 00m00s [187/189] Installing which-0:2.25-1.fc4 100% | 3.1 MiB/s | 85.5 KiB | 00m00s [188/189] Installing shadow-utils-2:4.1 100% | 85.9 MiB/s | 4.1 MiB | 00m00s [189/189] Installing info-0:7.3-2.fc45. 100% | 53.0 KiB/s | 404.2 KiB | 00m08s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: R-srpm-macros-1.3.7-2.fc45.noarch add-determinism-0.7.3-2.fc45.s390x alternatives-1.33-5.fc44.s390x ansible-srpm-macros-1-20.1.fc44.noarch audit-libs-4.1.4-2.fc45.s390x bash-5.3.9-3.fc44.s390x binutils-2.46.50-10.fc45.s390x build-reproducibility-srpm-macros-0.7.3-2.fc45.noarch bzip2-1.0.8-23.fc44.s390x bzip2-libs-1.0.8-23.fc44.s390x ca-certificates-2025.2.80_v9.0.304-7.fc45.noarch cmake-srpm-macros-4.3.0-3.fc45.noarch coreutils-9.11-3.fc45.s390x coreutils-common-9.11-3.fc45.s390x cpio-2.15-9.fc44.s390x crypto-policies-20260331-1.git4c567b2.fc45.noarch curl-8.21.0~rc2-1.fc45.s390x cyrus-sasl-lib-2.1.28-35.fc44.s390x debugedit-5.3-2.fc45.s390x diffutils-3.12-5.fc44.s390x dwz-0.16-3.fc44.s390x ed-1.22.5-2.fc45.s390x efi-srpm-macros-6-6.fc44.noarch elfutils-0.195-1.fc45.s390x elfutils-debuginfod-client-0.195-1.fc45.s390x elfutils-libelf-0.195-1.fc45.s390x elfutils-libs-0.195-1.fc45.s390x erlang-srpm-macros-0.3.11-1.fc45.noarch fedora-gpg-keys-45-0.1.noarch fedora-release-45-0.8.noarch fedora-release-common-45-0.8.noarch fedora-release-identity-basic-45-0.8.noarch fedora-repos-45-0.1.noarch fedora-repos-rawhide-45-0.1.noarch file-5.47-3.fc45.s390x file-libs-5.47-3.fc45.s390x filesystem-3.18-58.fc45.s390x filesystem-srpm-macros-3.18-58.fc45.noarch findutils-4.10.0-7.fc44.s390x fonts-srpm-macros-5.0.0-3.fc45.noarch forge-srpm-macros-0.4.0-4.fc44.noarch fpc-srpm-macros-1.3-16.fc44.noarch gap-srpm-macros-2-2.fc44.noarch gawk-5.4.0-3.fc45.s390x gdb-minimal-17.1-10.fc45.s390x gdbm-libs-1.23-11.fc44.s390x ghc-srpm-macros-1.10-1.fc44.noarch glibc-2.43.9000-20.fc45.s390x glibc-common-2.43.9000-20.fc45.s390x glibc-gconv-extra-2.43.9000-20.fc45.s390x glibc-minimal-langpack-2.43.9000-20.fc45.s390x gmp-6.3.0-5.fc44.s390x gnat-srpm-macros-7-2.fc44.noarch gnome-srpm-macros-1.0-1.fc45.noarch gnulib-l10n-20241231-3.fc45.noarch gnupg2-2.4.9-16.fc45.s390x gnupg2-dirmngr-2.4.9-16.fc45.s390x gnupg2-gpg-agent-2.4.9-16.fc45.s390x gnupg2-gpgconf-2.4.9-16.fc45.s390x gnupg2-keyboxd-2.4.9-16.fc45.s390x gnupg2-verify-2.4.9-16.fc45.s390x gnutls-3.8.13-1.fc45.s390x go-srpm-macros-3.8.0-2.fc44.noarch gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98 gpg-pubkey-d924b10d3e810dabdd8b56b596e7e91491211fce-697c9899 gpgverify-2.2-4.fc44.noarch grep-3.12-3.fc44.s390x gzip-1.14-2.fc44.s390x ima-evm-utils-libs-1.6.2-10.fc45.s390x info-7.3-2.fc45.s390x jansson-2.14-4.fc44.s390x java-srpm-macros-1-8.fc44.noarch json-c-0.18-8.fc44.s390x kernel-srpm-macros-1.0-29.fc45.noarch keyutils-libs-1.6.3-7.fc44.s390x krb5-libs-1.22.2-7.fc45.s390x libacl-2.3.2-7.fc45.s390x libarchive-3.8.7-1.fc45.s390x libassuan-2.5.7-5.fc44.s390x libattr-2.5.2-9.fc45.s390x libblkid-2.42.2-1.fc45.s390x libbrotli-1.2.0-4.fc45.s390x libcap-2.78-1.fc45.s390x libcap-ng-0.9.3-2.fc45.s390x libcbor-0.14.0-2.fc45.s390x libcom_err-1.47.4-1.fc45.s390x libcurl-8.21.0~rc2-1.fc45.s390x libeconf-0.7.9-3.fc44.s390x libevent-2.1.12-17.fc44.s390x libfdisk-2.42.2-1.fc45.s390x libffi-3.5.2-2.fc44.s390x libfido2-1.17.0-2.fc45.s390x libfsverity-1.7-1.fc45.s390x libgcc-16.1.1-2.fc45.s390x libgcrypt-1.12.2-1.fc45.s390x libgomp-16.1.1-2.fc45.s390x libgpg-error-1.61-1.fc45.s390x libidn2-2.3.8-3.fc44.s390x libksba-1.8.0-1.fc45.s390x liblastlog2-2.42.2-1.fc45.s390x libmount-2.42.2-1.fc45.s390x libnghttp2-1.69.0-1.fc45.s390x libnghttp3-1.16.0-1.fc45.s390x libpkgconf-2.5.1-1.fc45.s390x libpsl-0.21.5-7.fc44.s390x libselinux-3.10-2.fc45.s390x libselinux-utils-3.10-2.fc45.s390x libsemanage-3.10-2.fc45.s390x libsepol-3.10-1.fc44.s390x libsmartcols-2.42.2-1.fc45.s390x libssh-0.12.0-1.fc45.s390x libssh-config-0.12.0-1.fc45.noarch libstdc++-16.1.1-2.fc45.s390x libtasn1-4.21.0-1.fc45.s390x libtool-ltdl-2.5.4-10.fc44.s390x libunistring-1.1-11.fc44.s390x libusb1-1.0.30-1.fc45.s390x libuuid-2.42.2-1.fc45.s390x libverto-0.3.2-12.fc44.s390x libxcrypt-4.5.2-3.fc44.s390x libxml2-2.13.9-2.fc45.s390x libzstd-1.5.7-5.fc44.s390x linkdupes-0.7.3-2.fc45.s390x lua-libs-5.5.0-1.fc45.s390x lua-srpm-macros-1-17.fc44.noarch lz4-libs-1.10.0-4.fc44.s390x mpfr-4.2.2-3.fc44.s390x ncurses-base-6.6-2.fc45.noarch ncurses-libs-6.6-2.fc45.s390x nettle-3.10.1-3.fc44.s390x ngtcp2-1.22.1-1.fc45.s390x ngtcp2-crypto-ossl-1.22.1-1.fc45.s390x npth-1.8-4.fc44.s390x ocaml-srpm-macros-11-3.fc44.noarch openblas-srpm-macros-2-21.fc44.noarch openldap-2.6.13-1.fc45.s390x openssl-libs-3.5.7-1.fc45.s390x p11-kit-0.26.2-1.fc45.s390x p11-kit-trust-0.26.2-1.fc45.s390x package-notes-srpm-macros-0.19-1.fc45.noarch pam-libs-1.7.2-1.fc44.s390x patch-2.8-4.fc44.s390x pcre2-10.47-1.fc44.1.s390x pcre2-syntax-10.47-1.fc44.1.noarch perl-srpm-macros-1-61.fc44.noarch pkgconf-2.5.1-1.fc45.s390x pkgconf-m4-2.5.1-1.fc45.noarch pkgconf-pkg-config-2.5.1-1.fc45.s390x policycoreutils-3.10-5.fc45.s390x popt-1.19-10.fc44.s390x publicsuffix-list-dafsa-20260116-1.fc44.noarch pyproject-srpm-macros-1.22.2-1.fc45.noarch python-srpm-macros-3.15-1.fc45.noarch qt5-srpm-macros-5.15.18-2.fc44.noarch qt6-srpm-macros-6.11.1-1.fc45.noarch readline-8.3-4.fc44.s390x redhat-rpm-config-344-2.fc45.noarch redhat-systemd-presets-102-2.fc45.noarch redhat-systemd-presets-common-102-2.fc45.noarch rpm-6.0.1-6.fc45.s390x rpm-build-6.0.1-6.fc45.s390x rpm-build-libs-6.0.1-6.fc45.s390x rpm-libs-6.0.1-6.fc45.s390x rpm-plugin-selinux-6.0.1-6.fc45.s390x rpm-sequoia-1.10.2-2.fc45.s390x rpm-sign-libs-6.0.1-6.fc45.s390x rust-srpm-macros-28.4-3.fc44.noarch sed-4.10-1.fc45.s390x selinux-policy-45.5-1.fc45.noarch selinux-policy-targeted-45.5-1.fc45.noarch setup-2.15.0-29.fc45.noarch shadow-utils-4.19.3-3.fc45.s390x sqlite-libs-3.53.2-1.fc45.s390x systemd-libs-261~rc3-3.fc45.s390x systemd-standalone-sysusers-261~rc3-3.fc45.s390x tar-1.35-8.fc44.s390x tpm2-tss-4.1.3-9.fc44.s390x tree-sitter-srpm-macros-0.4.6-1.fc45.noarch unzip-6.0-69.fc44.s390x util-linux-2.42.2-1.fc45.s390x util-linux-core-2.42.2-1.fc45.s390x which-2.25-1.fc45.s390x xxhash-libs-0.8.3-4.fc44.s390x xz-5.8.3-1.fc45.s390x xz-libs-5.8.3-1.fc45.s390x zig-srpm-macros-1-8.fc44.noarch zip-3.0-45.fc44.s390x zlib-ng-compat-2.3.3-5.fc45.s390x zstd-1.5.7-5.fc44.s390x Start: buildsrpm Start: rpmbuild -bs Building target platforms: s390x Building for target s390x sh: line 1: perl: command not found setting SOURCE_DATE_EPOCH=1781740800 Wrote: /builddir/build/SRPMS/openbabel-3.2.0-1.fc45.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-s390x-1781813685.831258/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-vg176f3l/openbabel/openbabel.spec) Config(child) 0 minutes 51 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/openbabel-3.2.0-1.fc45.src.rpm) Config(fedora-rawhide-s390x) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1781813685.831258/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1781813685.831258/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1781813685.831258/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-6.fc45.s390x rpm-sequoia-1.10.2-2.fc45.s390x dnf5-5.4.2.1-3.fc45.s390x dnf5-plugins-5.4.2.1-3.fc45.s390x Finish: chroot init Start: build phase for openbabel-3.2.0-1.fc45.src.rpm Start: build setup for openbabel-3.2.0-1.fc45.src.rpm Building target platforms: s390x Building for target s390x sh: line 1: perl: command not found setting SOURCE_DATE_EPOCH=1781740800 Wrote: /builddir/build/SRPMS/openbabel-3.2.0-1.fc45.src.rpm Updating and loading repositories: fedora 100% | 1.9 KiB/s | 3.1 KiB | 00m02s Copr repository 100% | 1.1 KiB/s | 1.5 KiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing: ImageMagick s390x 1:7.1.2.13-4.fc45 fedora 83.8 KiB boost-devel s390x 0:1.90.0-10.fc45 fedora 142.7 MiB cmake s390x 0:4.3.0-3.fc45 fedora 37.2 MiB desktop-file-utils s390x 0:0.28-7.fc45 fedora 241.4 KiB dos2unix s390x 0:7.5.5-1.fc45 fedora 826.7 KiB eigen3-devel noarch 0:5.0.1-3.fc44 fedora 9.5 MiB gcc-c++ s390x 0:16.1.1-2.fc45 fedora 34.8 MiB inchi-devel s390x 0:1.0.6-14.fc44 fedora 97.0 KiB libxml2-devel s390x 0:2.13.9-2.fc45 fedora 3.2 MiB make s390x 1:4.4.1-12.fc44 fedora 1.9 MiB perl-devel s390x 4:5.42.2-524.fc45 fedora 3.8 MiB perl-generators noarch 0:1.16-9.fc44 fedora 21.8 KiB python3-devel s390x 0:3.15.0~b2-3.fc45 fedora 2.4 MiB python3-setuptools noarch 0:82.0.1-3.fc45 fedora 7.3 MiB rapidjson-devel s390x 0:1.1.0^20241222git24b5e7a-4.fc44 fedora 785.8 KiB ruby-devel s390x 0:4.0.5-33.fc45 fedora 1.6 MiB swig s390x 0:4.4.1-7.fc45 fedora 6.1 MiB wxGTK-devel s390x 0:3.2.9-2.fc44 fedora 74.3 KiB Installing dependencies: ImageMagick-libs s390x 1:7.1.2.13-4.fc45 fedora 8.6 MiB LibRaw s390x 0:0.22.1-1.fc45 fedora 2.8 MiB SDL3 s390x 0:3.4.10-1.fc45 fedora 3.4 MiB abattis-cantarell-vf-fonts noarch 0:0.301-17.fc44 fedora 192.7 KiB adobe-mappings-cmap noarch 0:20231115-5.fc44 fedora 15.2 MiB adobe-mappings-cmap-deprecated noarch 0:20231115-5.fc44 fedora 582.1 KiB adobe-mappings-pdf noarch 0:20190401-12.fc44 fedora 4.4 MiB adwaita-cursor-theme noarch 0:50.0-1.fc45 fedora 11.4 MiB adwaita-icon-theme noarch 0:50.0-1.fc45 fedora 1.1 MiB adwaita-icon-theme-legacy noarch 0:46.2-7.fc45 fedora 2.1 MiB alsa-lib s390x 0:1.2.16.1-1.fc45 fedora 1.5 MiB annobin-docs noarch 0:13.22-1.fc45 fedora 99.5 KiB annobin-plugin-gcc s390x 0:13.22-1.fc45 fedora 706.2 KiB at-spi2-atk s390x 0:2.60.4-2.fc45 fedora 295.2 KiB at-spi2-atk-devel s390x 0:2.60.4-2.fc45 fedora 1.6 KiB at-spi2-core s390x 0:2.60.4-2.fc45 fedora 1.6 MiB at-spi2-core-devel s390x 0:2.60.4-2.fc45 fedora 4.5 MiB atk s390x 0:2.60.4-2.fc45 fedora 272.5 KiB atk-devel s390x 0:2.60.4-2.fc45 fedora 6.0 MiB avahi-glib s390x 0:0.9~rc2-8.fc44 fedora 15.2 KiB avahi-libs s390x 0:0.9~rc2-8.fc44 fedora 165.2 KiB boost s390x 0:1.90.0-10.fc45 fedora 1.3 KiB boost-atomic s390x 0:1.90.0-10.fc45 fedora 16.4 KiB boost-charconv s390x 0:1.90.0-10.fc45 fedora 177.2 KiB boost-chrono s390x 0:1.90.0-10.fc45 fedora 37.0 KiB boost-cobalt s390x 0:1.90.0-10.fc45 fedora 630.6 KiB boost-container s390x 0:1.90.0-10.fc45 fedora 68.9 KiB boost-context s390x 0:1.90.0-10.fc45 fedora 12.1 KiB boost-contract s390x 0:1.90.0-10.fc45 fedora 110.2 KiB boost-coroutine s390x 0:1.90.0-10.fc45 fedora 20.7 KiB boost-date-time s390x 0:1.90.0-10.fc45 fedora 7.8 KiB boost-fiber s390x 0:1.90.0-10.fc45 fedora 90.1 KiB boost-filesystem s390x 0:1.90.0-10.fc45 fedora 150.5 KiB boost-graph s390x 0:1.90.0-10.fc45 fedora 377.1 KiB boost-iostreams s390x 0:1.90.0-10.fc45 fedora 93.7 KiB boost-json s390x 0:1.90.0-10.fc45 fedora 395.7 KiB boost-locale s390x 0:1.90.0-10.fc45 fedora 707.5 KiB boost-log s390x 0:1.90.0-10.fc45 fedora 1.5 MiB boost-math s390x 0:1.90.0-10.fc45 fedora 622.3 KiB boost-nowide s390x 0:1.90.0-10.fc45 fedora 20.5 KiB boost-numpy3 s390x 0:1.90.0-10.fc45 fedora 57.0 KiB boost-process s390x 0:1.90.0-10.fc45 fedora 73.3 KiB boost-program-options s390x 0:1.90.0-10.fc45 fedora 286.9 KiB boost-python3 s390x 0:1.90.0-10.fc45 fedora 271.8 KiB boost-random s390x 0:1.90.0-10.fc45 fedora 29.1 KiB boost-regex s390x 0:1.90.0-10.fc45 fedora 301.6 KiB boost-serialization s390x 0:1.90.0-10.fc45 fedora 470.3 KiB boost-stacktrace s390x 0:1.90.0-10.fc45 fedora 74.7 KiB boost-test s390x 0:1.90.0-10.fc45 fedora 660.3 KiB boost-thread s390x 0:1.90.0-10.fc45 fedora 123.1 KiB boost-timer s390x 0:1.90.0-10.fc45 fedora 20.5 KiB boost-type_erasure s390x 0:1.90.0-10.fc45 fedora 57.6 KiB boost-url s390x 0:1.90.0-10.fc45 fedora 350.2 KiB boost-wave s390x 0:1.90.0-10.fc45 fedora 989.6 KiB brotli s390x 0:1.2.0-4.fc45 fedora 33.2 KiB brotli-devel s390x 0:1.2.0-4.fc45 fedora 65.9 KiB bubblewrap s390x 0:0.11.0-4.fc44 fedora 138.5 KiB bzip2-devel s390x 0:1.0.8-23.fc44 fedora 309.8 KiB cairo s390x 0:1.18.4-6.fc44 fedora 1.8 MiB cairo-devel s390x 0:1.18.4-6.fc44 fedora 2.3 MiB cairo-gobject s390x 0:1.18.4-6.fc44 fedora 34.8 KiB cairo-gobject-devel s390x 0:1.18.4-6.fc44 fedora 7.0 KiB cdparanoia-libs s390x 0:10.2-50.fc44 fedora 116.8 KiB cmake-data noarch 0:4.3.0-3.fc45 fedora 9.4 MiB cmake-filesystem s390x 0:4.3.0-3.fc45 fedora 0.0 B cmake-rpm-macros noarch 0:4.3.0-3.fc45 fedora 8.4 KiB colord-libs s390x 0:1.4.8-4.fc44 fedora 844.9 KiB cpp s390x 0:16.1.1-2.fc45 fedora 30.6 MiB cups-filesystem noarch 1:2.4.19-3.fc45 fedora 0.0 B cups-libs s390x 1:2.4.19-3.fc45 fedora 718.4 KiB dbus s390x 1:1.16.2-1.fc45 fedora 0.0 B dbus-devel s390x 1:1.16.2-1.fc45 fedora 131.7 KiB dbus-libs s390x 1:1.16.2-1.fc45 fedora 365.3 KiB default-fonts-core-sans noarch 0:4.3-2.fc45 fedora 11.9 KiB duktape s390x 0:2.7.0-11.fc44 fedora 727.5 KiB emacs-filesystem s390x 1:30.2-2.fc44 fedora 0.0 B enchant2 s390x 0:2.8.16-2.fc45 fedora 206.1 KiB expat s390x 0:2.8.1-1.fc45 fedora 347.0 KiB fftw-libs-double s390x 0:3.3.10-17.fc44 fedora 1.7 MiB flac-libs s390x 0:1.5.0-8.fc44 fedora 594.5 KiB flexiblas s390x 0:3.5.0-2.fc44 fedora 38.0 KiB flexiblas-netlib s390x 0:3.5.0-2.fc44 fedora 17.2 MiB flexiblas-openblas-openmp s390x 0:3.5.0-2.fc44 fedora 38.8 KiB flite s390x 0:2.2-13.fc44 fedora 25.2 MiB fontconfig s390x 0:2.17.0-4.fc44 fedora 778.2 KiB fontconfig-devel s390x 0:2.17.0-4.fc44 fedora 123.6 KiB fonts-filesystem noarch 1:5.0.0-3.fc45 fedora 0.0 B freetype s390x 0:2.14.3-1.fc45 fedora 970.5 KiB freetype-devel s390x 0:2.14.3-1.fc45 fedora 8.6 MiB fribidi s390x 0:1.0.16-4.fc44 fedora 193.5 KiB fribidi-devel s390x 0:1.0.16-4.fc44 fedora 78.0 KiB gcc s390x 0:16.1.1-2.fc45 fedora 88.6 MiB gcc-plugin-annobin s390x 0:16.1.1-2.fc45 fedora 56.7 KiB gdk-pixbuf2 s390x 0:2.44.6-1.fc45 fedora 2.6 MiB gdk-pixbuf2-devel s390x 0:2.44.6-1.fc45 fedora 2.2 MiB gettext s390x 0:1.0-1.fc45 fedora 17.8 MiB gettext-envsubst s390x 0:1.0-1.fc45 fedora 70.3 KiB gettext-libs s390x 0:1.0-1.fc45 fedora 2.4 MiB gettext-runtime s390x 0:1.0-1.fc45 fedora 710.9 KiB glfw s390x 1:3.4-7.fc45 fedora 425.0 KiB glib-networking s390x 0:2.80.1-9.fc45 fedora 737.9 KiB glib2 s390x 0:2.89.0-1.fc45 fedora 15.4 MiB glib2-devel s390x 0:2.89.0-1.fc45 fedora 15.8 MiB glibc-devel s390x 0:2.43.9000-20.fc45 fedora 3.7 MiB glycin-devel s390x 0:2.1.1-1.fc45 fedora 126.2 KiB glycin-libs s390x 0:2.1.1-1.fc45 fedora 4.8 MiB glycin-loaders s390x 0:2.1.1-1.fc45 fedora 16.4 MiB google-droid-sans-fonts noarch 0:20200215-24.fc44 fedora 6.3 MiB google-noto-fonts-common noarch 0:20260601-2.fc45 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 0:20260601-2.fc45 fedora 1.4 MiB graphene s390x 0:1.10.8-4.fc44 fedora 190.2 KiB graphite2 s390x 0:1.3.14-20.fc44 fedora 198.9 KiB graphite2-devel s390x 0:1.3.14-20.fc44 fedora 49.3 KiB graphviz-libs s390x 0:15.0.0-3.fc45 fedora 1.4 MiB groff-base s390x 0:1.24.0-1.fc45 fedora 4.6 MiB gsettings-desktop-schemas s390x 0:50.1-1.fc45 fedora 6.1 MiB gsm s390x 0:1.0.24-2.fc45 fedora 61.3 KiB gssdp s390x 0:1.6.5-1.fc45 fedora 150.7 KiB gstreamer1 s390x 0:1.28.4-1.fc45 fedora 5.6 MiB gstreamer1-plugins-bad-free-libs s390x 0:1.28.4-1.fc45 fedora 3.7 MiB gstreamer1-plugins-base s390x 0:1.28.4-1.fc45 fedora 7.6 MiB gtk-update-icon-cache s390x 0:3.24.52-3.fc45 fedora 61.7 KiB gtk3 s390x 0:3.24.52-3.fc45 fedora 23.2 MiB gtk3-devel s390x 0:3.24.52-3.fc45 fedora 34.6 MiB gupnp s390x 0:1.6.10-1.fc45 fedora 319.7 KiB gupnp-igd s390x 0:1.6.0-8.fc45 fedora 70.4 KiB harfbuzz s390x 0:14.2.1-4.fc45 fedora 2.8 MiB harfbuzz-cairo s390x 0:14.2.1-4.fc45 fedora 43.7 KiB harfbuzz-devel s390x 0:14.2.1-4.fc45 fedora 6.4 MiB harfbuzz-gpu s390x 0:14.2.1-4.fc45 fedora 167.9 KiB harfbuzz-icu s390x 0:14.2.1-4.fc45 fedora 11.0 KiB harfbuzz-raster s390x 0:14.2.1-4.fc45 fedora 96.1 KiB harfbuzz-vector s390x 0:14.2.1-4.fc45 fedora 104.8 KiB hicolor-icon-theme noarch 0:0.18-3.fc44 fedora 72.4 KiB hidapi s390x 0:0.15.0-3.fc44 fedora 109.7 KiB hunspell s390x 0:1.7.2-12.fc45 fedora 1.3 MiB hunspell-en-US noarch 0:0.20260225-2.fc45 fedora 506.7 KiB hunspell-filesystem s390x 0:1.7.2-12.fc45 fedora 0.0 B hwdata noarch 0:0.408-1.fc45 fedora 10.0 MiB hyphen s390x 0:2.8.8-29.fc45 fedora 52.1 KiB imath s390x 0:3.1.12-7.fc45 fedora 367.4 KiB inchi-libs s390x 0:1.0.6-14.fc44 fedora 1.4 MiB iso-codes noarch 0:4.20.1-3.fc44 fedora 22.3 MiB javascriptcoregtk4.1 s390x 0:2.53.3-2.fc45 fedora 19.5 MiB jbig2dec-libs s390x 0:0.20-8.fc44 fedora 172.6 KiB jbigkit-libs s390x 0:2.1-33.fc44 fedora 116.7 KiB json-glib s390x 0:1.10.8-5.fc45 fedora 600.1 KiB jsoncpp s390x 0:1.9.6-3.fc44 fedora 263.5 KiB kernel-headers s390x 0:7.1.0-55.fc45 fedora 6.9 MiB lame-libs s390x 0:3.100-21.fc44 fedora 1.2 MiB lcms2 s390x 0:2.16-7.fc44 fedora 456.5 KiB lcms2-devel s390x 0:2.16-7.fc44 fedora 135.7 KiB libGLEW s390x 0:2.2.0-12.fc44 fedora 760.1 KiB libICE s390x 0:1.1.2-4.fc44 fedora 202.0 KiB libSM s390x 0:1.2.5-4.fc44 fedora 104.7 KiB libX11 s390x 0:1.8.13-1.fc45 fedora 1.4 MiB libX11-common noarch 0:1.8.13-1.fc45 fedora 1.1 MiB libX11-devel s390x 0:1.8.13-1.fc45 fedora 1.0 MiB libX11-xcb s390x 0:1.8.13-1.fc45 fedora 6.6 KiB libXau s390x 0:1.0.12-4.fc44 fedora 68.6 KiB libXau-devel s390x 0:1.0.12-4.fc44 fedora 7.3 KiB libXcomposite s390x 0:0.4.6-7.fc44 fedora 40.1 KiB libXcomposite-devel s390x 0:0.4.6-7.fc44 fedora 7.6 KiB libXcursor s390x 0:1.2.3-4.fc44 fedora 53.1 KiB libXcursor-devel s390x 0:1.2.3-4.fc44 fedora 20.5 KiB libXdamage s390x 0:1.1.6-7.fc44 fedora 39.3 KiB libXdamage-devel s390x 0:1.1.6-7.fc44 fedora 2.5 KiB libXext s390x 0:1.3.6-5.fc44 fedora 93.5 KiB libXext-devel s390x 0:1.3.6-5.fc44 fedora 97.7 KiB libXfixes s390x 0:6.0.1-7.fc44 fedora 29.8 KiB libXfixes-devel s390x 0:6.0.1-7.fc44 fedora 9.2 KiB libXft s390x 0:2.3.8-10.fc44 fedora 168.0 KiB libXft-devel s390x 0:2.3.8-10.fc44 fedora 29.1 KiB libXi s390x 0:1.8.3-1.fc45 fedora 80.1 KiB libXi-devel s390x 0:1.8.3-1.fc45 fedora 132.2 KiB libXinerama s390x 0:1.1.5-10.fc44 fedora 14.6 KiB libXinerama-devel s390x 0:1.1.5-10.fc44 fedora 6.9 KiB libXrandr s390x 0:1.5.4-7.fc44 fedora 51.3 KiB libXrandr-devel s390x 0:1.5.4-7.fc44 fedora 21.3 KiB libXrender s390x 0:0.9.12-4.fc44 fedora 45.6 KiB libXrender-devel s390x 0:0.9.12-4.fc44 fedora 50.1 KiB libXt s390x 0:1.3.1-4.fc44 fedora 469.2 KiB libXtst s390x 0:1.2.5-4.fc44 fedora 33.1 KiB libXtst-devel s390x 0:1.2.5-4.fc44 fedora 11.2 KiB libXv s390x 0:1.0.13-4.fc44 fedora 25.6 KiB libXxf86vm s390x 0:1.1.6-4.fc44 fedora 24.8 KiB libaom s390x 0:3.13.3-2.fc45 fedora 3.4 MiB libasan s390x 0:16.1.1-2.fc45 fedora 1.9 MiB libasyncns s390x 0:0.8-34.fc45 fedora 55.0 KiB libatomic s390x 0:16.1.1-2.fc45 fedora 37.2 KiB libavif s390x 0:1.3.0-4.fc44 fedora 265.6 KiB libblkid-devel s390x 0:2.42.2-1.fc45 fedora 45.0 KiB libcloudproviders s390x 0:0.4.0-1.fc45 fedora 128.1 KiB libcloudproviders-devel s390x 0:0.4.0-1.fc45 fedora 1.4 MiB libdatrie s390x 0:0.2.14-2.fc44 fedora 57.5 KiB libdatrie-devel s390x 0:0.2.14-2.fc44 fedora 563.1 KiB libdav1d s390x 0:1.5.3-1.fc45 fedora 641.2 KiB libdecor s390x 0:0.2.5-2.fc44 fedora 172.0 KiB libdeflate s390x 0:1.25-4.fc45 fedora 106.6 KiB libdrm s390x 0:2.4.134-1.fc45 fedora 420.7 KiB libedit s390x 0:3.1-59.20260512cvs.fc45 fedora 276.1 KiB libepoxy s390x 0:1.5.10-12.fc44 fedora 1.3 MiB libepoxy-devel s390x 0:1.5.10-12.fc44 fedora 1.6 MiB libevdev s390x 0:1.13.6-2.fc44 fedora 121.7 KiB libffi-devel s390x 0:3.5.2-2.fc44 fedora 30.1 KiB libgfortran s390x 0:16.1.1-2.fc45 fedora 2.5 MiB libglvnd s390x 1:1.7.0-9.fc44 fedora 874.6 KiB libglvnd-core-devel s390x 1:1.7.0-9.fc44 fedora 40.3 KiB libglvnd-devel s390x 1:1.7.0-9.fc44 fedora 2.1 MiB libglvnd-egl s390x 1:1.7.0-9.fc44 fedora 72.4 KiB libglvnd-gles s390x 1:1.7.0-9.fc44 fedora 113.3 KiB libglvnd-glx s390x 1:1.7.0-9.fc44 fedora 765.0 KiB libglvnd-opengl s390x 1:1.7.0-9.fc44 fedora 208.9 KiB libgs s390x 0:10.07.1-1.fc45 fedora 25.1 MiB libgudev s390x 0:238-9.fc44 fedora 83.4 KiB libgusb s390x 0:0.4.9-5.fc44 fedora 161.6 KiB libheif s390x 0:1.21.2-7.fc45 fedora 1.8 MiB libicu s390x 0:78.3-3.fc45 fedora 38.1 MiB libicu-devel s390x 0:78.3-3.fc45 fedora 5.2 MiB libijs s390x 0:0.35-26.fc44 fedora 61.2 KiB libjpeg-turbo s390x 0:3.1.4.1-1.fc45 fedora 880.4 KiB libjxl s390x 1:0.11.2-1.fc45 fedora 2.8 MiB liblerc s390x 0:4.1.0-1.fc45 fedora 253.6 KiB liblqr-1 s390x 0:0.4.2-29.fc44 fedora 104.8 KiB libmanette s390x 0:0.2.13-2.fc45 fedora 370.8 KiB libmount-devel s390x 0:2.42.2-1.fc45 fedora 66.5 KiB libmpc s390x 0:1.4.1-1.fc45 fedora 164.6 KiB libmspack s390x 0:0.10.1-0.16.alpha.fc44 fedora 155.3 KiB libnice s390x 0:0.1.23-2.fc44 fedora 497.2 KiB libogg s390x 2:1.3.6-2.fc44 fedora 49.4 KiB libopenjph s390x 0:0.29.0-1.fc45 fedora 353.6 KiB libpaper s390x 1:2.1.1-10.fc44 fedora 44.4 KiB libpciaccess s390x 0:0.16-17.fc44 fedora 44.2 KiB libpng s390x 2:1.6.58-1.fc45 fedora 257.5 KiB libpng-devel s390x 2:1.6.58-1.fc45 fedora 909.4 KiB libproxy s390x 0:0.5.12-2.fc44 fedora 101.5 KiB libraqm s390x 0:0.10.1-4.fc44 fedora 32.2 KiB librsvg2 s390x 0:2.62.3-1.fc45 fedora 6.1 MiB libseccomp s390x 0:2.6.0-3.fc44 fedora 240.6 KiB libseccomp-devel s390x 0:2.6.0-3.fc44 fedora 113.5 KiB libsecret s390x 0:0.21.7-10.fc45 fedora 596.6 KiB libselinux-devel s390x 0:3.10-2.fc45 fedora 122.2 KiB libsepol-devel s390x 0:3.10-1.fc44 fedora 121.5 KiB libsndfile s390x 0:1.2.2-11.fc45 fedora 617.7 KiB libsoup3 s390x 0:3.6.6-10.fc45 fedora 1.2 MiB libstdc++-devel s390x 0:16.1.1-2.fc45 fedora 40.6 MiB libstemmer s390x 0:3.1.1-1.fc45 fedora 957.3 KiB libtextstyle s390x 0:1.0-1.fc45 fedora 214.9 KiB libthai s390x 0:0.1.30-2.fc44 fedora 800.6 KiB libthai-devel s390x 0:0.1.30-2.fc44 fedora 651.3 KiB libtheora s390x 1:1.1.1-41.fc44 fedora 439.6 KiB libtiff s390x 0:4.7.1-2.fc44 fedora 666.6 KiB libtinysparql s390x 0:3.11.1-2.fc45 fedora 1.0 MiB libubsan s390x 0:16.1.1-2.fc45 fedora 499.8 KiB libultrahdr s390x 0:1.4.0^20251202git8cbc983-1.fc44 fedora 359.5 KiB libunwind s390x 0:1.8.3-1.fc44 fedora 166.2 KiB libuv s390x 1:1.52.1-1.fc45 fedora 588.1 KiB libva s390x 0:2.23.0-3.fc44 fedora 332.3 KiB libvisual s390x 1:0.4.2-4.fc44 fedora 472.3 KiB libvorbis s390x 1:1.3.7-20.fc45 fedora 892.4 KiB libwayland-client s390x 0:1.24.0-3.fc44 fedora 69.7 KiB libwayland-cursor s390x 0:1.24.0-3.fc44 fedora 37.0 KiB libwayland-egl s390x 0:1.24.0-3.fc44 fedora 8.0 KiB libwayland-server s390x 0:1.24.0-3.fc44 fedora 94.2 KiB libwebp s390x 0:1.6.0-3.fc44 fedora 711.1 KiB libwmf-lite s390x 0:0.2.13-9.fc44 fedora 159.4 KiB libxcb s390x 0:1.17.0-7.fc44 fedora 1.1 MiB libxcb-devel s390x 0:1.17.0-7.fc44 fedora 2.6 MiB libxcrypt-devel s390x 0:4.5.2-3.fc44 fedora 31.0 KiB libxkbcommon s390x 0:1.13.1-2.fc44 fedora 439.1 KiB libxkbcommon-devel s390x 0:1.13.1-2.fc44 fedora 393.4 KiB libxshmfence s390x 0:1.3.2-8.fc44 fedora 12.1 KiB libxslt s390x 0:1.1.43-7.fc45 fedora 463.2 KiB libyaml s390x 0:0.2.5-18.fc44 fedora 126.0 KiB libyuv s390x 0:0-0.62.20260213git6067afd.fc45 fedora 416.8 KiB libzip s390x 0:1.11.4-3.fc44 fedora 143.4 KiB llvm-filesystem s390x 0:22.1.7-1.fc45 fedora 0.0 B llvm-libs s390x 0:22.1.7-1.fc45 fedora 153.4 MiB lm_sensors-libs s390x 0:3.6.0-24.fc44 fedora 85.4 KiB lzo s390x 0:2.10-16.fc44 fedora 198.6 KiB lzo-devel s390x 0:2.10-16.fc44 fedora 212.2 KiB lzo-minilzo s390x 0:2.10-16.fc44 fedora 40.4 KiB mesa-dri-drivers s390x 0:26.1.2-1.fc45 fedora 20.1 MiB mesa-filesystem s390x 0:26.1.2-1.fc45 fedora 3.6 KiB mesa-libEGL s390x 0:26.1.2-1.fc45 fedora 378.1 KiB mesa-libGL s390x 0:26.1.2-1.fc45 fedora 361.9 KiB mesa-libGLU s390x 0:9.0.3-8.fc44 fedora 405.3 KiB mesa-libGLU-devel s390x 0:9.0.3-8.fc44 fedora 17.0 KiB mesa-libgbm s390x 0:26.1.2-1.fc45 fedora 19.3 KiB mpdecimal s390x 0:4.0.1-3.fc44 fedora 240.8 KiB mpg123-libs s390x 0:1.32.10-4.fc45 fedora 849.0 KiB ncurses s390x 0:6.6-2.fc45 fedora 621.7 KiB ninja-build s390x 0:1.13.2-4.fc45 fedora 488.4 KiB noopenh264 s390x 0:2.6.0-4.fc44 fedora 34.8 KiB openblas s390x 0:0.3.29-3.fc45 fedora 111.7 KiB openblas-openmp s390x 0:0.3.29-3.fc45 fedora 15.1 MiB openexr-libs s390x 0:3.4.12-2.fc45 fedora 3.2 MiB openjpeg s390x 0:2.5.4-3.fc44 fedora 488.0 KiB opus s390x 0:1.6-2.fc44 fedora 463.2 KiB orc s390x 0:0.4.41-3.fc44 fedora 877.5 KiB pango s390x 0:1.57.1-1.fc45 fedora 1.0 MiB pango-devel s390x 0:1.57.1-1.fc45 fedora 1.5 MiB pcre2-devel s390x 0:10.47-1.fc44.1 fedora 2.1 MiB pcre2-utf16 s390x 0:10.47-1.fc44.1 fedora 678.7 KiB pcre2-utf32 s390x 0:10.47-1.fc44.1 fedora 646.7 KiB perl-AutoLoader noarch 0:5.74-524.fc45 fedora 20.6 KiB perl-AutoSplit noarch 0:5.74-524.fc45 fedora 23.1 KiB perl-B s390x 0:1.89-524.fc45 fedora 517.0 KiB perl-Benchmark noarch 0:1.27-524.fc45 fedora 36.4 KiB perl-Carp noarch 0:1.54-521.fc44 fedora 46.6 KiB perl-Class-Struct noarch 0:0.68-524.fc45 fedora 25.4 KiB perl-Data-Dumper s390x 0:2.192-523.fc45 fedora 111.3 KiB perl-Devel-PPPort s390x 0:3.73-522.fc44 fedora 909.6 KiB perl-Digest noarch 0:1.20-521.fc44 fedora 35.3 KiB perl-Digest-MD5 s390x 0:2.59-521.fc44 fedora 55.3 KiB perl-DynaLoader s390x 0:1.57-524.fc45 fedora 32.1 KiB perl-Encode s390x 4:3.24-524.fc45 fedora 9.6 MiB perl-Errno s390x 0:1.38-524.fc45 fedora 8.4 KiB perl-Exporter noarch 0:5.79-521.fc44 fedora 54.3 KiB perl-ExtUtils-Command noarch 2:7.78-1.fc45 fedora 9.6 KiB perl-ExtUtils-Constant noarch 0:0.25-524.fc45 fedora 85.9 KiB perl-ExtUtils-Install noarch 0:2.22-521.fc44 fedora 85.5 KiB perl-ExtUtils-MakeMaker noarch 2:7.78-1.fc45 fedora 739.7 KiB perl-ExtUtils-Manifest noarch 1:1.75-521.fc44 fedora 84.8 KiB perl-ExtUtils-ParseXS noarch 1:3.63-1.fc45 fedora 721.6 KiB perl-Fcntl s390x 0:1.20-524.fc45 fedora 48.4 KiB perl-Fedora-VSP noarch 0:0.001-38.fc44 fedora 39.7 KiB perl-File-Basename noarch 0:2.86-524.fc45 fedora 14.0 KiB perl-File-Compare noarch 0:1.100.800-524.fc45 fedora 5.6 KiB perl-File-Copy noarch 0:2.41-524.fc45 fedora 19.7 KiB perl-File-Find noarch 0:1.44-524.fc45 fedora 42.0 KiB perl-File-Path noarch 0:2.18-522.fc44 fedora 63.5 KiB perl-File-Temp noarch 1:0.231.200-2.fc44 fedora 163.7 KiB perl-File-stat noarch 0:1.14-524.fc45 fedora 12.5 KiB perl-FileHandle noarch 0:2.05-524.fc45 fedora 9.4 KiB perl-Getopt-Long noarch 1:2.58-521.fc44 fedora 144.5 KiB perl-Getopt-Std noarch 0:1.14-524.fc45 fedora 11.2 KiB perl-HTTP-Tiny noarch 0:0.096-1.fc45 fedora 162.4 KiB perl-Hash-Util s390x 0:0.32-524.fc45 fedora 54.6 KiB perl-Hash-Util-FieldHash s390x 0:1.27-524.fc45 fedora 58.2 KiB perl-IO s390x 0:1.55-524.fc45 fedora 147.0 KiB perl-IO-Socket-IP noarch 0:0.44-1.fc45 fedora 100.5 KiB perl-IO-Socket-SSL noarch 0:2.098-3.fc45 fedora 723.5 KiB perl-IPC-Open3 noarch 0:1.24-524.fc45 fedora 27.7 KiB perl-MIME-Base32 noarch 0:1.303-25.fc44 fedora 30.7 KiB perl-MIME-Base64 s390x 0:3.16-521.fc44 fedora 45.7 KiB perl-Net-SSLeay s390x 0:1.96-2.fc45 fedora 1.4 MiB perl-POSIX s390x 0:2.23-524.fc45 fedora 241.2 KiB perl-PathTools s390x 0:3.94-521.fc44 fedora 175.7 KiB perl-Pod-Escapes noarch 1:1.07-521.fc44 fedora 24.9 KiB perl-Pod-Perldoc noarch 0:3.28.01-522.fc44 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.48-2.fc45 fedora 565.9 KiB perl-Pod-Usage noarch 4:2.05-521.fc44 fedora 86.3 KiB perl-Scalar-List-Utils s390x 5:1.70-2.fc44 fedora 144.5 KiB perl-SelectSaver noarch 0:1.02-524.fc45 fedora 2.2 KiB perl-Socket s390x 4:2.041-1.fc45 fedora 124.4 KiB perl-Storable s390x 1:3.41-1.fc45 fedora 226.8 KiB perl-Symbol noarch 0:1.09-524.fc45 fedora 6.8 KiB perl-Term-ANSIColor noarch 0:5.01-522.fc44 fedora 97.5 KiB perl-Term-Cap noarch 0:1.18-521.fc44 fedora 29.3 KiB perl-Test-Harness noarch 1:3.52-5.fc44 fedora 560.8 KiB perl-Text-ParseWords noarch 0:3.31-521.fc44 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 0:2024.001-521.fc44 fedora 22.6 KiB perl-Time-HiRes s390x 4:1.9778-521.fc44 fedora 115.4 KiB perl-Time-Local noarch 2:1.350-521.fc44 fedora 69.0 KiB perl-URI noarch 0:5.35-1.fc45 fedora 268.2 KiB perl-base noarch 0:2.27-524.fc45 fedora 12.6 KiB perl-constant noarch 0:1.33-522.fc44 fedora 26.2 KiB perl-fields noarch 0:2.27-524.fc45 fedora 11.9 KiB perl-if noarch 0:0.61.000-524.fc45 fedora 5.8 KiB perl-interpreter s390x 4:5.42.2-524.fc45 fedora 118.4 KiB perl-lib s390x 0:0.65-524.fc45 fedora 8.5 KiB perl-libnet noarch 0:3.15-522.fc44 fedora 289.4 KiB perl-libs s390x 4:5.42.2-524.fc45 fedora 11.8 MiB perl-locale noarch 0:1.13-524.fc45 fedora 6.1 KiB perl-macros noarch 4:5.42.2-524.fc45 fedora 5.5 KiB perl-mro s390x 0:1.29-524.fc45 fedora 41.2 KiB perl-overload noarch 0:1.40-524.fc45 fedora 71.6 KiB perl-overloading noarch 0:0.02-524.fc45 fedora 4.9 KiB perl-parent noarch 1:0.244-521.fc44 fedora 10.3 KiB perl-podlators noarch 1:6.0.2-521.fc44 fedora 317.5 KiB perl-vars noarch 0:1.05-524.fc45 fedora 3.9 KiB perl-version s390x 9:0.99.34-1.fc45 fedora 128.5 KiB pixman s390x 0:0.46.2-3.fc44 fedora 564.2 KiB pixman-devel s390x 0:0.46.2-3.fc44 fedora 56.1 KiB pulseaudio-libs s390x 0:17.0-9.fc44 fedora 3.4 MiB pyproject-rpm-macros noarch 0:1.22.2-1.fc45 fedora 147.2 KiB python-pip-wheel noarch 0:26.1.1-6.fc45 fedora 1.2 MiB python-rpm-macros noarch 0:3.15-1.fc45 fedora 28.0 KiB python3 s390x 0:3.15.0~b2-3.fc45 fedora 24.5 KiB python3-libs s390x 0:3.15.0~b2-3.fc45 fedora 47.8 MiB python3-numpy s390x 1:2.4.6-2.fc45 fedora 38.4 MiB python3-numpy-f2py s390x 1:2.4.6-2.fc45 fedora 2.1 MiB python3-packaging noarch 0:26.2-2.fc45 fedora 1.0 MiB python3-pyparsing noarch 0:3.1.2-17.fc45 fedora 1.0 MiB python3-rpm-generators noarch 0:14-15.fc45 fedora 81.7 KiB python3-rpm-macros noarch 0:3.15-1.fc45 fedora 6.5 KiB rav1e-libs s390x 0:0.8.1-3.fc44 fedora 2.3 MiB rhash s390x 0:1.4.5-4.fc44 fedora 354.0 KiB ruby s390x 0:4.0.5-33.fc45 fedora 93.6 KiB ruby-default-gems noarch 0:4.0.5-33.fc45 fedora 64.3 KiB ruby-libs s390x 0:4.0.5-33.fc45 fedora 13.6 MiB rubygem-psych s390x 0:5.3.1-33.fc45 fedora 142.7 KiB rubygems noarch 0:4.0.13-1.fc45 fedora 1.8 MiB rubypick noarch 0:1.1.1-24.fc44 fedora 4.4 KiB sdl2-compat s390x 0:2.32.70-1.fc45 fedora 464.3 KiB shared-mime-info s390x 0:2.4-11.fc45 fedora 5.2 MiB svt-av1-libs s390x 0:3.1.2-2.fc44 fedora 2.7 MiB sysprof-capture-devel s390x 0:50.0-1.fc45 fedora 733.8 KiB systemd-devel s390x 0:261~rc3-3.fc45 fedora 623.0 KiB systemd-rpm-macros noarch 0:261~rc3-3.fc45 fedora 8.5 KiB systemtap-sdt-devel s390x 0:5.5-2.fc45 fedora 184.5 KiB systemtap-sdt-dtrace s390x 0:5.5-2.fc45 fedora 181.1 KiB tzdata noarch 0:2026b-1.fc45 fedora 1.2 MiB urw-base35-bookman-fonts noarch 0:20200910-28.fc45 fedora 1.4 MiB urw-base35-c059-fonts noarch 0:20200910-28.fc45 fedora 1.4 MiB urw-base35-d050000l-fonts noarch 0:20200910-28.fc45 fedora 84.3 KiB urw-base35-fonts noarch 0:20200910-28.fc45 fedora 5.3 KiB urw-base35-fonts-common noarch 0:20200910-28.fc45 fedora 37.4 KiB urw-base35-gothic-fonts noarch 0:20200910-28.fc45 fedora 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 0:20200910-28.fc45 fedora 1.0 MiB urw-base35-nimbus-roman-fonts noarch 0:20200910-28.fc45 fedora 1.4 MiB urw-base35-nimbus-sans-fonts noarch 0:20200910-28.fc45 fedora 2.4 MiB urw-base35-p052-fonts noarch 0:20200910-28.fc45 fedora 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 0:20200910-28.fc45 fedora 64.9 KiB urw-base35-z003-fonts noarch 0:20200910-28.fc45 fedora 390.8 KiB vim-filesystem noarch 2:9.2.597-1.fc45 fedora 40.0 B vulkan-loader s390x 0:1.4.350.0-1.fc45 fedora 561.8 KiB wayland-devel s390x 0:1.24.0-3.fc44 fedora 687.6 KiB webkit2gtk4.1 s390x 0:2.53.3-2.fc45 fedora 110.3 MiB wxBase s390x 0:3.2.9-2.fc44 fedora 3.0 MiB wxBase-devel s390x 0:3.2.9-2.fc44 fedora 6.7 MiB wxGTK s390x 0:3.2.9-2.fc44 fedora 17.0 MiB wxGTK-gl s390x 0:3.2.9-2.fc44 fedora 110.1 KiB wxGTK-i18n noarch 0:3.2.9-2.fc44 fedora 5.7 MiB wxGTK-media s390x 0:3.2.9-2.fc44 fedora 86.0 KiB wxGTK-webview s390x 0:3.2.9-2.fc44 fedora 190.7 KiB xdg-dbus-proxy s390x 0:0.1.7-1.fc45 fedora 90.4 KiB xkeyboard-config noarch 0:2.47-1.fc45 fedora 6.4 MiB xml-common noarch 0:0.6.3-68.fc44 fedora 78.4 KiB xorg-x11-proto-devel noarch 0:2025.1-2.fc44 fedora 1.8 MiB xprop s390x 0:1.2.8-5.fc44 fedora 58.3 KiB xz-devel s390x 1:5.8.3-1.fc45 fedora 258.8 KiB zlib-ng-compat-devel s390x 0:2.3.3-5.fc45 fedora 107.0 KiB Transaction Summary: Installing: 462 packages Total size of inbound packages is 367 MiB. Need to download 367 MiB. After this operation, 1 GiB extra will be used (install 1 GiB, remove 0 B). [ 1/462] ImageMagick-1:7.1.2.13-4.fc45 100% | 156.4 KiB/s | 72.7 KiB | 00m00s [ 2/462] desktop-file-utils-0:0.28-7.f 100% | 191.5 KiB/s | 72.8 KiB | 00m00s [ 3/462] dos2unix-0:7.5.5-1.fc45.s390x 100% | 567.5 KiB/s | 298.5 KiB | 00m01s [ 4/462] boost-devel-0:1.90.0-10.fc45. 100% | 9.2 MiB/s | 15.0 MiB | 00m02s [ 5/462] cmake-0:4.3.0-3.fc45.s390x 100% | 8.3 MiB/s | 13.6 MiB | 00m02s [ 6/462] inchi-devel-0:1.0.6-14.fc44.s 100% | 48.2 KiB/s | 24.5 KiB | 00m01s [ 7/462] eigen3-devel-0:5.0.1-3.fc44.n 100% | 1.5 MiB/s | 1.3 MiB | 00m01s [ 8/462] gcc-c++-0:16.1.1-2.fc45.s390x 100% | 15.9 MiB/s | 14.1 MiB | 00m01s [ 9/462] libxml2-devel-0:2.13.9-2.fc45 100% | 1.2 MiB/s | 456.5 KiB | 00m00s [ 10/462] make-1:4.4.1-12.fc44.s390x 100% | 1.9 MiB/s | 605.0 KiB | 00m00s [ 11/462] python3-devel-0:3.15.0~b2-3.f 100% | 3.0 MiB/s | 480.9 KiB | 00m00s [ 12/462] perl-generators-0:1.16-9.fc44 100% | 95.8 KiB/s | 16.3 KiB | 00m00s [ 13/462] perl-devel-4:5.42.2-524.fc45. 100% | 3.6 MiB/s | 663.1 KiB | 00m00s [ 14/462] rapidjson-devel-0:1.1.0^20241 100% | 525.9 KiB/s | 143.0 KiB | 00m00s [ 15/462] ruby-devel-0:4.0.5-33.fc45.s3 100% | 1.1 MiB/s | 329.0 KiB | 00m00s [ 16/462] wxGTK-devel-0:3.2.9-2.fc44.s3 100% | 136.5 KiB/s | 32.7 KiB | 00m00s [ 17/462] boost-0:1.90.0-10.fc45.s390x 100% | 51.4 KiB/s | 12.0 KiB | 00m00s [ 18/462] swig-0:4.4.1-7.fc45.s390x 100% | 2.0 MiB/s | 1.7 MiB | 00m01s [ 19/462] boost-numpy3-0:1.90.0-10.fc45 100% | 137.7 KiB/s | 27.5 KiB | 00m00s [ 20/462] libicu-devel-0:78.3-3.fc45.s3 100% | 3.6 MiB/s | 809.3 KiB | 00m00s [ 21/462] cmake-filesystem-0:4.3.0-3.fc 100% | 96.5 KiB/s | 14.7 KiB | 00m00s [ 22/462] expat-0:2.8.1-1.fc45.s390x 100% | 855.8 KiB/s | 130.9 KiB | 00m00s [ 23/462] ImageMagick-libs-1:7.1.2.13-4 100% | 2.3 MiB/s | 2.6 MiB | 00m01s [ 24/462] jsoncpp-0:1.9.6-3.fc44.s390x 100% | 321.7 KiB/s | 98.8 KiB | 00m00s [ 25/462] cmake-data-0:4.3.0-3.fc45.noa 100% | 3.2 MiB/s | 2.7 MiB | 00m01s [ 26/462] libuv-1:1.52.1-1.fc45.s390x 100% | 809.7 KiB/s | 270.4 KiB | 00m00s [ 27/462] emacs-filesystem-1:30.2-2.fc4 100% | 52.3 KiB/s | 7.9 KiB | 00m00s [ 28/462] glib2-0:2.89.0-1.fc45.s390x 100% | 17.7 MiB/s | 3.1 MiB | 00m00s [ 29/462] rhash-0:1.4.5-4.fc44.s390x 100% | 617.7 KiB/s | 203.2 KiB | 00m00s [ 30/462] libmpc-0:1.4.1-1.fc45.s390x 100% | 411.4 KiB/s | 75.3 KiB | 00m00s [ 31/462] libstdc++-devel-0:16.1.1-2.fc 100% | 14.3 MiB/s | 5.8 MiB | 00m00s [ 32/462] inchi-libs-0:1.0.6-14.fc44.s3 100% | 1.7 MiB/s | 756.9 KiB | 00m00s [ 33/462] gcc-0:16.1.1-2.fc45.s390x 100% | 46.0 MiB/s | 35.2 MiB | 00m01s [ 34/462] xz-devel-1:5.8.3-1.fc45.s390x 100% | 248.6 KiB/s | 66.4 KiB | 00m00s [ 35/462] zlib-ng-compat-devel-0:2.3.3- 100% | 250.9 KiB/s | 38.1 KiB | 00m00s [ 36/462] libxcrypt-devel-0:4.5.2-3.fc4 100% | 194.4 KiB/s | 29.9 KiB | 00m00s [ 37/462] perl-ExtUtils-Constant-0:0.25 100% | 253.0 KiB/s | 44.3 KiB | 00m00s [ 38/462] perl-Devel-PPPort-0:3.73-522. 100% | 882.6 KiB/s | 220.6 KiB | 00m00s [ 39/462] perl-ExtUtils-Install-0:2.22- 100% | 244.4 KiB/s | 43.5 KiB | 00m00s [ 40/462] perl-File-Compare-0:1.100.800 100% | 86.4 KiB/s | 13.1 KiB | 00m00s [ 41/462] perl-File-Path-0:2.18-522.fc4 100% | 231.9 KiB/s | 35.3 KiB | 00m00s [ 42/462] perl-ExtUtils-ParseXS-1:3.63- 100% | 924.2 KiB/s | 297.6 KiB | 00m00s [ 43/462] perl-Getopt-Long-1:2.58-521.f 100% | 418.5 KiB/s | 63.6 KiB | 00m00s [ 44/462] perl-PathTools-0:3.94-521.fc4 100% | 568.5 KiB/s | 87.0 KiB | 00m00s [ 45/462] perl-Text-Tabs+Wrap-0:2024.00 100% | 143.1 KiB/s | 21.8 KiB | 00m00s [ 46/462] perl-interpreter-4:5.42.2-524 100% | 465.7 KiB/s | 72.2 KiB | 00m00s [ 47/462] perl-libs-4:5.42.2-524.fc45.s 100% | 16.0 MiB/s | 2.7 MiB | 00m00s [ 48/462] perl-vars-0:1.05-524.fc45.noa 100% | 84.7 KiB/s | 12.9 KiB | 00m00s [ 49/462] systemtap-sdt-devel-0:5.5-2.f 100% | 457.4 KiB/s | 70.0 KiB | 00m00s [ 50/462] systemtap-sdt-dtrace-0:5.5-2. 100% | 399.6 KiB/s | 70.7 KiB | 00m00s [ 51/462] perl-File-Basename-0:2.86-524 100% | 112.1 KiB/s | 17.0 KiB | 00m00s [ 52/462] perl-Fedora-VSP-0:0.001-38.fc 100% | 129.0 KiB/s | 23.0 KiB | 00m00s [ 53/462] perl-macros-4:5.42.2-524.fc45 100% | 69.4 KiB/s | 12.1 KiB | 00m00s [ 54/462] python3-0:3.15.0~b2-3.fc45.s3 100% | 171.9 KiB/s | 26.1 KiB | 00m00s [ 55/462] python3-libs-0:3.15.0~b2-3.fc 100% | 35.0 MiB/s | 10.9 MiB | 00m00s [ 56/462] ruby-0:4.0.5-33.fc45.s390x 100% | 176.2 KiB/s | 42.3 KiB | 00m00s [ 57/462] rubygems-0:4.0.13-1.fc45.noar 100% | 1.1 MiB/s | 470.1 KiB | 00m00s [ 58/462] mesa-libGLU-devel-0:9.0.3-8.f 100% | 56.9 KiB/s | 11.8 KiB | 00m00s [ 59/462] ruby-libs-0:4.0.5-33.fc45.s39 100% | 3.9 MiB/s | 3.6 MiB | 00m01s [ 60/462] wxBase-0:3.2.9-2.fc44.s390x 100% | 1.7 MiB/s | 1.0 MiB | 00m01s [ 61/462] wxBase-devel-0:3.2.9-2.fc44.s 100% | 2.5 MiB/s | 1.3 MiB | 00m01s [ 62/462] wxGTK-gl-0:3.2.9-2.fc44.s390x 100% | 159.1 KiB/s | 40.1 KiB | 00m00s [ 63/462] gtk3-devel-0:3.24.52-3.fc45.s 100% | 2.8 MiB/s | 4.3 MiB | 00m02s [ 64/462] wxGTK-media-0:3.2.9-2.fc44.s3 100% | 191.5 KiB/s | 38.7 KiB | 00m00s [ 65/462] wxGTK-webview-0:3.2.9-2.fc44. 100% | 308.3 KiB/s | 73.4 KiB | 00m00s [ 66/462] cairo-0:1.18.4-6.fc44.s390x 100% | 3.2 MiB/s | 732.6 KiB | 00m00s [ 67/462] LibRaw-0:0.22.1-1.fc45.s390x 100% | 1.1 MiB/s | 513.8 KiB | 00m00s [ 68/462] wxGTK-0:3.2.9-2.fc44.s390x 100% | 4.5 MiB/s | 5.0 MiB | 00m01s [ 69/462] fontconfig-0:2.17.0-4.fc44.s3 100% | 1.6 MiB/s | 277.4 KiB | 00m00s [ 70/462] fftw-libs-double-0:3.3.10-17. 100% | 1.7 MiB/s | 663.5 KiB | 00m00s [ 71/462] freetype-0:2.14.3-1.fc45.s390 100% | 2.9 MiB/s | 460.3 KiB | 00m00s [ 72/462] gdk-pixbuf2-0:2.44.6-1.fc45.s 100% | 2.7 MiB/s | 502.7 KiB | 00m00s [ 73/462] graphviz-libs-0:15.0.0-3.fc45 100% | 2.3 MiB/s | 504.5 KiB | 00m00s [ 74/462] harfbuzz-0:14.2.1-4.fc45.s390 100% | 7.3 MiB/s | 1.2 MiB | 00m00s [ 75/462] jbigkit-libs-0:2.1-33.fc44.s3 100% | 370.5 KiB/s | 56.3 KiB | 00m00s [ 76/462] lcms2-0:2.16-7.fc44.s390x 100% | 1.2 MiB/s | 190.2 KiB | 00m00s [ 77/462] libICE-0:1.1.2-4.fc44.s390x 100% | 462.0 KiB/s | 79.9 KiB | 00m00s [ 78/462] imath-0:3.1.12-7.fc45.s390x 100% | 237.7 KiB/s | 98.9 KiB | 00m00s [ 79/462] libSM-0:1.2.5-4.fc44.s390x 100% | 255.2 KiB/s | 45.7 KiB | 00m00s [ 80/462] libXext-0:1.3.6-5.fc44.s390x 100% | 225.3 KiB/s | 39.7 KiB | 00m00s [ 81/462] libXt-0:1.3.1-4.fc44.s390x 100% | 1.1 MiB/s | 189.8 KiB | 00m00s [ 82/462] libX11-0:1.8.13-1.fc45.s390x 100% | 3.3 MiB/s | 685.1 KiB | 00m00s [ 83/462] libjpeg-turbo-0:3.1.4.1-1.fc4 100% | 1.8 MiB/s | 285.3 KiB | 00m00s [ 84/462] libjxl-1:0.11.2-1.fc45.s390x 100% | 5.0 MiB/s | 963.8 KiB | 00m00s [ 85/462] libgs-0:10.07.1-1.fc45.s390x 100% | 18.7 MiB/s | 4.1 MiB | 00m00s [ 86/462] libpng-2:1.6.58-1.fc45.s390x 100% | 868.8 KiB/s | 132.9 KiB | 00m00s [ 87/462] libraqm-0:0.10.1-4.fc44.s390x 100% | 152.1 KiB/s | 23.0 KiB | 00m00s [ 88/462] liblqr-1-0:0.4.2-29.fc44.s390 100% | 211.5 KiB/s | 52.0 KiB | 00m00s [ 89/462] libtiff-0:4.7.1-2.fc44.s390x 100% | 1.5 MiB/s | 242.6 KiB | 00m00s [ 90/462] librsvg2-0:2.62.3-1.fc45.s390 100% | 10.8 MiB/s | 2.0 MiB | 00m00s [ 91/462] libwebp-0:1.6.0-3.fc44.s390x 100% | 1.8 MiB/s | 278.1 KiB | 00m00s [ 92/462] libultrahdr-0:1.4.0^20251202g 100% | 514.2 KiB/s | 157.9 KiB | 00m00s [ 93/462] libwmf-lite-0:0.2.13-9.fc44.s 100% | 256.0 KiB/s | 74.5 KiB | 00m00s [ 94/462] libzip-0:1.11.4-3.fc44.s390x 100% | 338.9 KiB/s | 70.8 KiB | 00m00s [ 95/462] openjpeg-0:2.5.4-3.fc44.s390x 100% | 1.4 MiB/s | 214.1 KiB | 00m00s [ 96/462] pango-0:1.57.1-1.fc45.s390x 100% | 2.1 MiB/s | 375.1 KiB | 00m00s [ 97/462] openexr-libs-0:3.4.12-2.fc45. 100% | 2.2 MiB/s | 928.2 KiB | 00m00s [ 98/462] boost-atomic-0:1.90.0-10.fc45 100% | 70.7 KiB/s | 17.8 KiB | 00m00s [ 99/462] boost-charconv-0:1.90.0-10.fc 100% | 453.8 KiB/s | 99.4 KiB | 00m00s [100/462] boost-chrono-0:1.90.0-10.fc45 100% | 117.8 KiB/s | 24.1 KiB | 00m00s [101/462] boost-cobalt-0:1.90.0-10.fc45 100% | 1.0 MiB/s | 199.4 KiB | 00m00s [102/462] boost-container-0:1.90.0-10.f 100% | 159.5 KiB/s | 38.9 KiB | 00m00s [103/462] boost-context-0:1.90.0-10.fc4 100% | 62.3 KiB/s | 14.5 KiB | 00m00s [104/462] boost-contract-0:1.90.0-10.fc 100% | 197.5 KiB/s | 47.4 KiB | 00m00s [105/462] boost-coroutine-0:1.90.0-10.f 100% | 80.2 KiB/s | 17.8 KiB | 00m00s [106/462] boost-date-time-0:1.90.0-10.f 100% | 66.6 KiB/s | 13.1 KiB | 00m00s [107/462] boost-fiber-0:1.90.0-10.fc45. 100% | 210.8 KiB/s | 43.0 KiB | 00m00s [108/462] boost-filesystem-0:1.90.0-10. 100% | 339.6 KiB/s | 68.6 KiB | 00m00s [109/462] boost-graph-0:1.90.0-10.fc45. 100% | 636.7 KiB/s | 159.8 KiB | 00m00s [110/462] boost-iostreams-0:1.90.0-10.f 100% | 200.4 KiB/s | 39.7 KiB | 00m00s [111/462] boost-json-0:1.90.0-10.fc45.s 100% | 650.9 KiB/s | 161.4 KiB | 00m00s [112/462] boost-locale-0:1.90.0-10.fc45 100% | 1.1 MiB/s | 237.8 KiB | 00m00s [113/462] boost-log-0:1.90.0-10.fc45.s3 100% | 2.0 MiB/s | 499.2 KiB | 00m00s [114/462] boost-nowide-0:1.90.0-10.fc45 100% | 89.6 KiB/s | 18.1 KiB | 00m00s [115/462] boost-math-0:1.90.0-10.fc45.s 100% | 730.8 KiB/s | 221.4 KiB | 00m00s [116/462] boost-process-0:1.90.0-10.fc4 100% | 203.2 KiB/s | 39.6 KiB | 00m00s [117/462] boost-program-options-0:1.90. 100% | 501.9 KiB/s | 109.9 KiB | 00m00s [118/462] boost-python3-0:1.90.0-10.fc4 100% | 479.3 KiB/s | 98.2 KiB | 00m00s [119/462] boost-random-0:1.90.0-10.fc45 100% | 109.5 KiB/s | 22.1 KiB | 00m00s [120/462] boost-regex-0:1.90.0-10.fc45. 100% | 794.9 KiB/s | 121.6 KiB | 00m00s [121/462] boost-serialization-0:1.90.0- 100% | 684.0 KiB/s | 136.1 KiB | 00m00s [122/462] boost-stacktrace-0:1.90.0-10. 100% | 178.7 KiB/s | 37.2 KiB | 00m00s [123/462] boost-test-0:1.90.0-10.fc45.s 100% | 869.5 KiB/s | 240.0 KiB | 00m00s [124/462] boost-thread-0:1.90.0-10.fc45 100% | 259.6 KiB/s | 55.0 KiB | 00m00s [125/462] boost-timer-0:1.90.0-10.fc45. 100% | 94.0 KiB/s | 18.8 KiB | 00m00s [126/462] boost-type_erasure-0:1.90.0-1 100% | 167.6 KiB/s | 34.0 KiB | 00m00s [127/462] boost-url-0:1.90.0-10.fc45.s3 100% | 631.3 KiB/s | 128.8 KiB | 00m00s [128/462] boost-wave-0:1.90.0-10.fc45.s 100% | 1.3 MiB/s | 268.9 KiB | 00m00s [129/462] vim-filesystem-2:9.2.597-1.fc 100% | 86.2 KiB/s | 15.9 KiB | 00m00s [130/462] libicu-0:78.3-3.fc45.s390x 100% | 34.9 MiB/s | 11.1 MiB | 00m00s [131/462] glibc-devel-0:2.43.9000-20.fc 100% | 3.6 MiB/s | 686.1 KiB | 00m00s [132/462] cpp-0:16.1.1-2.fc45.s390x 100% | 35.5 MiB/s | 11.5 MiB | 00m00s [133/462] python3-numpy-1:2.4.6-2.fc45. 100% | 13.2 MiB/s | 7.5 MiB | 00m01s [134/462] libasan-0:16.1.1-2.fc45.s390x 100% | 3.5 MiB/s | 558.9 KiB | 00m00s [135/462] libatomic-0:16.1.1-2.fc45.s39 100% | 314.9 KiB/s | 48.2 KiB | 00m00s [136/462] libubsan-0:16.1.1-2.fc45.s390 100% | 1.5 MiB/s | 236.8 KiB | 00m00s [137/462] perl-Carp-0:1.54-521.fc44.noa 100% | 189.4 KiB/s | 28.8 KiB | 00m00s [138/462] perl-Data-Dumper-0:2.192-523. 100% | 377.2 KiB/s | 57.3 KiB | 00m00s [139/462] perl-Exporter-0:5.79-521.fc44 100% | 201.4 KiB/s | 30.8 KiB | 00m00s [140/462] perl-constant-0:1.33-522.fc44 100% | 150.7 KiB/s | 22.9 KiB | 00m00s [141/462] perl-AutoSplit-0:5.74-524.fc4 100% | 124.3 KiB/s | 21.5 KiB | 00m00s [142/462] perl-ExtUtils-MakeMaker-2:7.7 100% | 1.7 MiB/s | 299.9 KiB | 00m00s [143/462] perl-File-Copy-0:2.41-524.fc4 100% | 130.8 KiB/s | 20.0 KiB | 00m00s [144/462] perl-File-Find-0:1.44-524.fc4 100% | 166.0 KiB/s | 25.2 KiB | 00m00s [145/462] perl-Symbol-0:1.09-524.fc45.n 100% | 92.6 KiB/s | 14.1 KiB | 00m00s [146/462] perl-fields-0:2.27-524.fc45.n 100% | 91.4 KiB/s | 16.0 KiB | 00m00s [147/462] perl-Pod-Usage-4:2.05-521.fc4 100% | 265.8 KiB/s | 40.7 KiB | 00m00s [148/462] perl-Text-ParseWords-0:3.31-5 100% | 108.4 KiB/s | 16.5 KiB | 00m00s [149/462] perl-base-0:2.27-524.fc45.noa 100% | 105.9 KiB/s | 16.1 KiB | 00m00s [150/462] perl-overload-0:1.40-524.fc45 100% | 299.0 KiB/s | 45.4 KiB | 00m00s [151/462] perl-Errno-0:1.38-524.fc45.s3 100% | 96.9 KiB/s | 14.7 KiB | 00m00s [152/462] perl-Scalar-List-Utils-5:1.70 100% | 495.3 KiB/s | 75.3 KiB | 00m00s [153/462] perl-DynaLoader-0:1.57-524.fc 100% | 169.6 KiB/s | 25.8 KiB | 00m00s [154/462] perl-Encode-4:3.24-524.fc45.s 100% | 10.3 MiB/s | 1.7 MiB | 00m00s [155/462] mpdecimal-0:4.0.1-3.fc44.s390 100% | 690.4 KiB/s | 106.3 KiB | 00m00s [156/462] python3-pyparsing-0:3.1.2-17. 100% | 1.4 MiB/s | 287.0 KiB | 00m00s [157/462] python-pip-wheel-0:26.1.1-6.f 100% | 7.2 MiB/s | 1.2 MiB | 00m00s [158/462] tzdata-0:2026b-1.fc45.noarch 100% | 4.4 MiB/s | 713.5 KiB | 00m00s [159/462] rubypick-0:1.1.1-24.fc44.noar 100% | 50.2 KiB/s | 10.0 KiB | 00m00s [160/462] rubygem-psych-0:5.3.1-33.fc45 100% | 243.3 KiB/s | 58.4 KiB | 00m00s [161/462] at-spi2-atk-devel-0:2.60.4-2. 100% | 57.9 KiB/s | 11.8 KiB | 00m00s [162/462] atk-0:2.60.4-2.fc45.s390x 100% | 306.9 KiB/s | 82.9 KiB | 00m00s [163/462] atk-devel-0:2.60.4-2.fc45.s39 100% | 1.4 MiB/s | 449.1 KiB | 00m00s [164/462] cairo-devel-0:1.18.4-6.fc44.s 100% | 689.7 KiB/s | 191.7 KiB | 00m00s [165/462] cairo-gobject-devel-0:1.18.4- 100% | 51.0 KiB/s | 10.9 KiB | 00m00s [166/462] fontconfig-devel-0:2.17.0-4.f 100% | 531.0 KiB/s | 168.9 KiB | 00m00s [167/462] fribidi-devel-0:1.0.16-4.fc44 100% | 109.6 KiB/s | 29.3 KiB | 00m00s [168/462] glib2-devel-0:2.89.0-1.fc45.s 100% | 9.2 MiB/s | 1.5 MiB | 00m00s [169/462] gdk-pixbuf2-devel-0:2.44.6-1. 100% | 904.5 KiB/s | 369.9 KiB | 00m00s [170/462] libXcomposite-devel-0:0.4.6-7 100% | 57.0 KiB/s | 15.7 KiB | 00m00s [171/462] libX11-devel-0:1.8.13-1.fc45. 100% | 2.4 MiB/s | 1.1 MiB | 00m00s [172/462] libXcursor-devel-0:1.2.3-4.fc 100% | 143.0 KiB/s | 39.5 KiB | 00m00s [173/462] libXdamage-devel-0:1.1.6-7.fc 100% | 46.6 KiB/s | 9.4 KiB | 00m00s [174/462] libXfixes-devel-0:6.0.1-7.fc4 100% | 62.2 KiB/s | 12.4 KiB | 00m00s [175/462] libXext-devel-0:1.3.6-5.fc44. 100% | 341.8 KiB/s | 85.1 KiB | 00m00s [176/462] libXinerama-devel-0:1.1.5-10. 100% | 64.5 KiB/s | 13.0 KiB | 00m00s [177/462] libXi-devel-0:1.8.3-1.fc45.s3 100% | 456.1 KiB/s | 121.3 KiB | 00m00s [178/462] libXrandr-devel-0:1.5.4-7.fc4 100% | 86.1 KiB/s | 19.1 KiB | 00m00s [179/462] libcloudproviders-devel-0:0.4 100% | 456.4 KiB/s | 124.6 KiB | 00m00s [180/462] libepoxy-0:1.5.10-12.fc44.s39 100% | 797.0 KiB/s | 234.3 KiB | 00m00s [181/462] gtk3-0:3.24.52-3.fc45.s390x 100% | 3.3 MiB/s | 6.0 MiB | 00m02s [182/462] libepoxy-devel-0:1.5.10-12.fc 100% | 399.4 KiB/s | 133.0 KiB | 00m00s [183/462] libxkbcommon-devel-0:1.13.1-2 100% | 488.2 KiB/s | 74.7 KiB | 00m00s [184/462] pango-devel-0:1.57.1-1.fc45.s 100% | 707.3 KiB/s | 162.0 KiB | 00m00s [185/462] wayland-devel-0:1.24.0-3.fc44 100% | 546.6 KiB/s | 154.1 KiB | 00m00s [186/462] libglvnd-devel-1:1.7.0-9.fc44 100% | 405.8 KiB/s | 161.9 KiB | 00m00s [187/462] mesa-libGLU-0:9.0.3-8.fc44.s3 100% | 697.9 KiB/s | 185.6 KiB | 00m00s [188/462] pcre2-utf32-0:10.47-1.fc44.1. 100% | 1.6 MiB/s | 258.8 KiB | 00m00s [189/462] libsecret-0:0.21.7-10.fc45.s3 100% | 674.0 KiB/s | 194.8 KiB | 00m00s [190/462] cairo-gobject-0:1.18.4-6.fc44 100% | 102.7 KiB/s | 17.7 KiB | 00m00s [191/462] libXtst-0:1.2.5-4.fc44.s390x 100% | 118.2 KiB/s | 20.7 KiB | 00m00s [192/462] libxkbcommon-0:1.13.1-2.fc44. 100% | 1.2 MiB/s | 188.2 KiB | 00m00s [193/462] libmspack-0:0.10.1-0.16.alpha 100% | 320.7 KiB/s | 78.2 KiB | 00m00s [194/462] sdl2-compat-0:2.32.70-1.fc45. 100% | 500.1 KiB/s | 148.5 KiB | 00m00s [195/462] libglvnd-glx-1:1.7.0-9.fc44.s 100% | 576.9 KiB/s | 163.3 KiB | 00m00s [196/462] wxGTK-i18n-0:3.2.9-2.fc44.noa 100% | 2.4 MiB/s | 987.3 KiB | 00m00s [197/462] gstreamer1-plugins-bad-free-l 100% | 2.1 MiB/s | 1.2 MiB | 00m01s [198/462] gstreamer1-0:1.28.4-1.fc45.s3 100% | 2.5 MiB/s | 1.7 MiB | 00m01s [199/462] libXrender-0:0.9.12-4.fc44.s3 100% | 161.7 KiB/s | 28.0 KiB | 00m00s [200/462] libxcb-0:1.17.0-7.fc44.s390x 100% | 1.6 MiB/s | 249.4 KiB | 00m00s [201/462] lzo-0:2.10-16.fc44.s390x 100% | 447.5 KiB/s | 76.5 KiB | 00m00s [202/462] pixman-0:0.46.2-3.fc44.s390x 100% | 757.5 KiB/s | 225.0 KiB | 00m00s [203/462] javascriptcoregtk4.1-0:2.53.3 100% | 3.0 MiB/s | 4.4 MiB | 00m01s [204/462] default-fonts-core-sans-0:4.3 100% | 170.2 KiB/s | 29.3 KiB | 00m00s [205/462] fonts-filesystem-1:5.0.0-3.fc 100% | 49.6 KiB/s | 8.7 KiB | 00m00s [206/462] xml-common-0:0.6.3-68.fc44.no 100% | 204.8 KiB/s | 31.1 KiB | 00m00s [207/462] glycin-libs-0:2.1.1-1.fc45.s3 100% | 8.6 MiB/s | 1.6 MiB | 00m00s [208/462] shared-mime-info-0:2.4-11.fc4 100% | 2.2 MiB/s | 394.9 KiB | 00m00s [209/462] graphite2-0:1.3.14-20.fc44.s3 100% | 646.5 KiB/s | 98.9 KiB | 00m00s [210/462] libX11-common-0:1.8.13-1.fc45 100% | 1.0 MiB/s | 175.5 KiB | 00m00s [211/462] adobe-mappings-cmap-0:2023111 100% | 11.6 MiB/s | 2.2 MiB | 00m00s [212/462] adobe-mappings-cmap-deprecate 100% | 590.4 KiB/s | 102.7 KiB | 00m00s [213/462] cups-libs-1:2.4.19-3.fc45.s39 100% | 1.6 MiB/s | 278.0 KiB | 00m00s [214/462] adobe-mappings-pdf-0:20190401 100% | 2.6 MiB/s | 619.9 KiB | 00m00s [215/462] jbig2dec-libs-0:0.20-8.fc44.s 100% | 451.4 KiB/s | 77.6 KiB | 00m00s [216/462] google-droid-sans-fonts-0:202 100% | 10.0 MiB/s | 2.7 MiB | 00m00s [217/462] libijs-0:0.35-26.fc44.s390x 100% | 169.7 KiB/s | 29.2 KiB | 00m00s [218/462] libpaper-1:2.1.1-10.fc44.s390 100% | 154.1 KiB/s | 26.7 KiB | 00m00s [219/462] urw-base35-fonts-0:20200910-2 100% | 56.6 KiB/s | 10.0 KiB | 00m00s [220/462] fribidi-0:1.0.16-4.fc44.s390x 100% | 370.0 KiB/s | 56.6 KiB | 00m00s [221/462] liblerc-0:4.1.0-1.fc45.s390x 100% | 728.5 KiB/s | 110.7 KiB | 00m00s [222/462] libdav1d-0:1.5.3-1.fc45.s390x 100% | 1.7 MiB/s | 323.2 KiB | 00m00s [223/462] libXft-0:2.3.8-10.fc44.s390x 100% | 394.6 KiB/s | 75.8 KiB | 00m00s [224/462] libdeflate-0:1.25-4.fc45.s390 100% | 251.5 KiB/s | 62.9 KiB | 00m00s [225/462] libthai-0:0.1.30-2.fc44.s390x 100% | 1.2 MiB/s | 216.3 KiB | 00m00s [226/462] python3-numpy-f2py-1:2.4.6-2. 100% | 2.0 MiB/s | 512.3 KiB | 00m00s [227/462] kernel-headers-0:7.1.0-55.fc4 100% | 10.7 MiB/s | 1.7 MiB | 00m00s [228/462] perl-B-0:1.89-524.fc45.s390x 100% | 1.2 MiB/s | 181.1 KiB | 00m00s [229/462] perl-ExtUtils-Command-2:7.78- 100% | 62.7 KiB/s | 13.9 KiB | 00m00s [230/462] perl-ExtUtils-Manifest-1:1.75 100% | 196.8 KiB/s | 34.0 KiB | 00m00s [231/462] perl-IO-0:1.55-524.fc45.s390x 100% | 550.9 KiB/s | 83.7 KiB | 00m00s [232/462] perl-POSIX-0:2.23-524.fc45.s3 100% | 642.1 KiB/s | 98.2 KiB | 00m00s [233/462] flexiblas-netlib-0:3.5.0-2.fc 100% | 3.2 MiB/s | 4.7 MiB | 00m01s [234/462] perl-Test-Harness-1:3.52-5.fc 100% | 1.5 MiB/s | 276.9 KiB | 00m00s [235/462] perl-lib-0:0.65-524.fc45.s390 100% | 69.1 KiB/s | 14.7 KiB | 00m00s [236/462] perl-podlators-1:6.0.2-521.fc 100% | 834.3 KiB/s | 128.5 KiB | 00m00s [237/462] perl-version-9:0.99.34-1.fc45 100% | 357.7 KiB/s | 63.3 KiB | 00m00s [238/462] perl-Hash-Util-0:0.32-524.fc4 100% | 204.1 KiB/s | 34.3 KiB | 00m00s [239/462] perl-Pod-Perldoc-0:3.28.01-52 100% | 562.8 KiB/s | 86.1 KiB | 00m00s [240/462] perl-mro-0:1.29-524.fc45.s390 100% | 194.3 KiB/s | 29.5 KiB | 00m00s [241/462] perl-overloading-0:0.02-524.f 100% | 84.1 KiB/s | 12.8 KiB | 00m00s [242/462] perl-Getopt-Std-0:1.14-524.fc 100% | 102.5 KiB/s | 15.6 KiB | 00m00s [243/462] perl-MIME-Base64-0:3.16-521.f 100% | 197.5 KiB/s | 30.2 KiB | 00m00s [244/462] perl-Storable-1:3.41-1.fc45.s 100% | 652.2 KiB/s | 99.8 KiB | 00m00s [245/462] perl-parent-1:0.244-521.fc44. 100% | 97.3 KiB/s | 14.9 KiB | 00m00s [246/462] libyaml-0:0.2.5-18.fc44.s390x 100% | 408.2 KiB/s | 62.1 KiB | 00m00s [247/462] ruby-default-gems-0:4.0.5-33. 100% | 139.1 KiB/s | 38.5 KiB | 00m00s [248/462] at-spi2-atk-0:2.60.4-2.fc45.s 100% | 278.3 KiB/s | 89.6 KiB | 00m00s [249/462] dbus-devel-1:1.16.2-1.fc45.s3 100% | 254.6 KiB/s | 38.7 KiB | 00m00s [250/462] at-spi2-core-devel-0:2.60.4-2 100% | 905.6 KiB/s | 361.3 KiB | 00m00s [251/462] at-spi2-core-0:2.60.4-2.fc45. 100% | 1.0 MiB/s | 399.6 KiB | 00m00s [252/462] libXrender-devel-0:0.9.12-4.f 100% | 66.0 KiB/s | 18.9 KiB | 00m00s [253/462] freetype-devel-0:2.14.3-1.fc4 100% | 2.1 MiB/s | 1.0 MiB | 00m00s [254/462] libpng-devel-2:1.6.58-1.fc45. 100% | 934.6 KiB/s | 303.8 KiB | 00m00s [255/462] libxcb-devel-0:1.17.0-7.fc44. 100% | 2.5 MiB/s | 1.4 MiB | 00m01s [256/462] webkit2gtk4.1-0:2.53.3-2.fc45 100% | 4.0 MiB/s | 28.7 MiB | 00m07s [257/462] lzo-devel-0:2.10-16.fc44.s390 100% | 118.5 KiB/s | 39.0 KiB | 00m00s [258/462] gettext-0:1.0-1.fc45.s390x 100% | 12.3 MiB/s | 2.0 MiB | 00m00s [259/462] pixman-devel-0:0.46.2-3.fc44. 100% | 63.7 KiB/s | 17.8 KiB | 00m00s [260/462] glycin-devel-0:2.1.1-1.fc45.s 100% | 121.4 KiB/s | 24.8 KiB | 00m00s [261/462] libffi-devel-0:3.5.2-2.fc44.s 100% | 187.0 KiB/s | 28.4 KiB | 00m00s [262/462] libmount-devel-0:2.42.2-1.fc4 100% | 166.1 KiB/s | 25.2 KiB | 00m00s [263/462] libselinux-devel-0:3.10-2.fc4 100% | 1.0 MiB/s | 160.6 KiB | 00m00s [264/462] pcre2-devel-0:10.47-1.fc44.1. 100% | 3.1 MiB/s | 550.8 KiB | 00m00s [265/462] python3-packaging-0:26.2-2.fc 100% | 1.5 MiB/s | 238.1 KiB | 00m00s [266/462] sysprof-capture-devel-0:50.0- 100% | 1.0 MiB/s | 158.3 KiB | 00m00s [267/462] adwaita-icon-theme-0:50.0-1.f 100% | 1.1 MiB/s | 404.8 KiB | 00m00s [268/462] gtk-update-icon-cache-0:3.24. 100% | 103.4 KiB/s | 34.6 KiB | 00m00s [269/462] colord-libs-0:1.4.8-4.fc44.s3 100% | 590.1 KiB/s | 226.6 KiB | 00m00s [270/462] libXcomposite-0:0.4.6-7.fc44. 100% | 135.3 KiB/s | 23.9 KiB | 00m00s [271/462] hicolor-icon-theme-0:0.18-3.f 100% | 252.9 KiB/s | 66.0 KiB | 00m00s [272/462] libXcursor-0:1.2.3-4.fc44.s39 100% | 137.7 KiB/s | 32.8 KiB | 00m00s [273/462] libXfixes-0:6.0.1-7.fc44.s390 100% | 93.3 KiB/s | 18.7 KiB | 00m00s [274/462] libXdamage-0:1.1.6-7.fc44.s39 100% | 84.7 KiB/s | 23.0 KiB | 00m00s [275/462] libXi-0:1.8.3-1.fc45.s390x 100% | 238.9 KiB/s | 42.5 KiB | 00m00s [276/462] libXrandr-0:1.5.4-7.fc44.s390 100% | 136.9 KiB/s | 28.1 KiB | 00m00s [277/462] libXinerama-0:1.1.5-10.fc44.s 100% | 62.9 KiB/s | 14.0 KiB | 00m00s [278/462] libcloudproviders-0:0.4.0-1.f 100% | 156.4 KiB/s | 45.8 KiB | 00m00s [279/462] libwayland-client-0:1.24.0-3. 100% | 154.3 KiB/s | 35.2 KiB | 00m00s [280/462] libtinysparql-0:3.11.1-2.fc45 100% | 1.0 MiB/s | 357.0 KiB | 00m00s [281/462] libwayland-cursor-0:1.24.0-3. 100% | 67.2 KiB/s | 19.5 KiB | 00m00s [282/462] libwayland-egl-0:1.24.0-3.fc4 100% | 61.1 KiB/s | 12.2 KiB | 00m00s [283/462] libX11-xcb-0:1.8.13-1.fc45.s3 100% | 51.2 KiB/s | 10.8 KiB | 00m00s [284/462] xorg-x11-proto-devel-0:2025.1 100% | 1.0 MiB/s | 302.2 KiB | 00m00s [285/462] libXft-devel-0:2.3.8-10.fc44. 100% | 197.7 KiB/s | 49.2 KiB | 00m00s [286/462] harfbuzz-devel-0:14.2.1-4.fc4 100% | 1.6 MiB/s | 637.9 KiB | 00m00s [287/462] libthai-devel-0:0.1.30-2.fc44 100% | 569.0 KiB/s | 129.2 KiB | 00m00s [288/462] libwayland-server-0:1.24.0-3. 100% | 168.1 KiB/s | 43.4 KiB | 00m00s [289/462] libglvnd-core-devel-1:1.7.0-9 100% | 84.1 KiB/s | 17.2 KiB | 00m00s [290/462] libglvnd-1:1.7.0-9.fc44.s390x 100% | 432.3 KiB/s | 133.6 KiB | 00m00s [291/462] libglvnd-egl-1:1.7.0-9.fc44.s 100% | 178.4 KiB/s | 37.6 KiB | 00m00s [292/462] libglvnd-opengl-1:1.7.0-9.fc4 100% | 245.4 KiB/s | 50.8 KiB | 00m00s [293/462] libglvnd-gles-1:1.7.0-9.fc44. 100% | 138.9 KiB/s | 35.1 KiB | 00m00s [294/462] xkeyboard-config-0:2.47-1.fc4 100% | 6.2 MiB/s | 1.0 MiB | 00m00s [295/462] libunwind-0:1.8.3-1.fc44.s390 100% | 385.7 KiB/s | 67.1 KiB | 00m00s [296/462] mesa-libGL-0:26.1.2-1.fc45.s3 100% | 458.2 KiB/s | 136.5 KiB | 00m00s [297/462] libdrm-0:2.4.134-1.fc45.s390x 100% | 638.5 KiB/s | 167.9 KiB | 00m00s [298/462] SDL3-0:3.4.10-1.fc45.s390x 100% | 2.0 MiB/s | 1.3 MiB | 00m01s [299/462] libnice-0:0.1.23-2.fc44.s390x 100% | 739.8 KiB/s | 197.5 KiB | 00m00s [300/462] libva-0:2.23.0-3.fc44.s390x 100% | 407.0 KiB/s | 118.0 KiB | 00m00s [301/462] bubblewrap-0:0.11.0-4.fc44.s3 100% | 373.5 KiB/s | 66.9 KiB | 00m00s [302/462] vulkan-loader-0:1.4.350.0-1.f 100% | 612.2 KiB/s | 159.2 KiB | 00m00s [303/462] gstreamer1-plugins-base-0:1.2 100% | 2.5 MiB/s | 2.3 MiB | 00m01s [304/462] enchant2-0:2.8.16-2.fc45.s390 100% | 364.6 KiB/s | 82.4 KiB | 00m00s [305/462] harfbuzz-icu-0:14.2.1-4.fc45. 100% | 73.7 KiB/s | 17.0 KiB | 00m00s [306/462] hyphen-0:2.8.8-29.fc45.s390x 100% | 133.9 KiB/s | 30.5 KiB | 00m00s [307/462] libavif-0:1.3.0-4.fc44.s390x 100% | 396.5 KiB/s | 126.5 KiB | 00m00s [308/462] libmanette-0:0.2.13-2.fc45.s3 100% | 274.5 KiB/s | 66.4 KiB | 00m00s [309/462] libseccomp-0:2.6.0-3.fc44.s39 100% | 509.4 KiB/s | 78.4 KiB | 00m00s [310/462] libxslt-0:1.1.43-7.fc45.s390x 100% | 1.2 MiB/s | 182.7 KiB | 00m00s [311/462] libsoup3-0:3.6.6-10.fc45.s390 100% | 1.0 MiB/s | 399.5 KiB | 00m00s [312/462] mesa-libgbm-0:26.1.2-1.fc45.s 100% | 94.3 KiB/s | 18.8 KiB | 00m00s [313/462] libXau-0:1.0.12-4.fc44.s390x 100% | 219.6 KiB/s | 33.4 KiB | 00m00s [314/462] xdg-dbus-proxy-0:0.1.7-1.fc45 100% | 137.4 KiB/s | 44.9 KiB | 00m00s [315/462] abattis-cantarell-vf-fonts-0: 100% | 661.4 KiB/s | 120.4 KiB | 00m00s [316/462] google-noto-sans-vf-fonts-0:2 100% | 2.8 MiB/s | 614.2 KiB | 00m00s [317/462] glycin-loaders-0:2.1.1-1.fc45 100% | 12.8 MiB/s | 3.6 MiB | 00m00s [318/462] avahi-libs-0:0.9~rc2-8.fc44.s 100% | 384.4 KiB/s | 67.3 KiB | 00m00s [319/462] cups-filesystem-1:2.4.19-3.fc 100% | 70.4 KiB/s | 12.3 KiB | 00m00s [320/462] urw-base35-bookman-fonts-0:20 100% | 4.6 MiB/s | 845.3 KiB | 00m00s [321/462] urw-base35-c059-fonts-0:20200 100% | 3.5 MiB/s | 872.9 KiB | 00m00s [322/462] urw-base35-d050000l-fonts-0:2 100% | 421.0 KiB/s | 75.4 KiB | 00m00s [323/462] urw-base35-fonts-common-0:202 100% | 36.9 KiB/s | 20.8 KiB | 00m01s [324/462] urw-base35-gothic-fonts-0:202 100% | 1.2 MiB/s | 640.9 KiB | 00m01s [325/462] urw-base35-nimbus-mono-ps-fon 100% | 4.3 MiB/s | 793.9 KiB | 00m00s [326/462] urw-base35-nimbus-roman-fonts 100% | 4.4 MiB/s | 853.1 KiB | 00m00s [327/462] urw-base35-p052-fonts-0:20200 100% | 3.5 MiB/s | 972.4 KiB | 00m00s [328/462] urw-base35-nimbus-sans-fonts- 100% | 4.3 MiB/s | 1.3 MiB | 00m00s [329/462] urw-base35-standard-symbols-p 100% | 334.4 KiB/s | 57.8 KiB | 00m00s [330/462] urw-base35-z003-fonts-0:20200 100% | 1.5 MiB/s | 275.1 KiB | 00m00s [331/462] libdatrie-0:0.2.14-2.fc44.s39 100% | 191.5 KiB/s | 32.9 KiB | 00m00s [332/462] flexiblas-0:3.5.0-2.fc44.s390 100% | 107.8 KiB/s | 23.0 KiB | 00m00s [333/462] flexiblas-openblas-openmp-0:3 100% | 77.0 KiB/s | 17.1 KiB | 00m00s [334/462] libgfortran-0:16.1.1-2.fc45.s 100% | 2.4 MiB/s | 627.8 KiB | 00m00s [335/462] perl-if-0:0.61.000-524.fc45.n 100% | 91.4 KiB/s | 13.9 KiB | 00m00s [336/462] perl-Fcntl-0:1.20-524.fc45.s3 100% | 195.5 KiB/s | 29.7 KiB | 00m00s [337/462] perl-File-stat-0:1.14-524.fc4 100% | 111.5 KiB/s | 16.9 KiB | 00m00s [338/462] perl-SelectSaver-0:1.02-524.f 100% | 76.4 KiB/s | 11.6 KiB | 00m00s [339/462] flite-0:2.2-13.fc44.s390x 100% | 3.1 MiB/s | 12.9 MiB | 00m04s [340/462] perl-Socket-4:2.041-1.fc45.s3 100% | 350.3 KiB/s | 55.3 KiB | 00m00s [341/462] perl-locale-0:1.13-524.fc45.n 100% | 88.0 KiB/s | 13.4 KiB | 00m00s [342/462] perl-Pod-Simple-1:3.48-2.fc45 100% | 1.4 MiB/s | 222.7 KiB | 00m00s [343/462] perl-Benchmark-0:1.27-524.fc4 100% | 153.3 KiB/s | 26.7 KiB | 00m00s [344/462] perl-Term-ANSIColor-0:5.01-52 100% | 313.7 KiB/s | 47.7 KiB | 00m00s [345/462] perl-Term-Cap-0:1.18-521.fc44 100% | 140.1 KiB/s | 22.0 KiB | 00m00s [346/462] perl-Hash-Util-FieldHash-0:1. 100% | 222.8 KiB/s | 38.3 KiB | 00m00s [347/462] groff-base-0:1.24.0-1.fc45.s3 100% | 7.9 MiB/s | 1.3 MiB | 00m00s [348/462] perl-File-Temp-1:0.231.200-2. 100% | 391.9 KiB/s | 59.6 KiB | 00m00s [349/462] perl-HTTP-Tiny-0:0.096-1.fc45 100% | 383.1 KiB/s | 58.2 KiB | 00m00s [350/462] perl-IPC-Open3-0:1.24-524.fc4 100% | 157.8 KiB/s | 24.0 KiB | 00m00s [351/462] dbus-libs-1:1.16.2-1.fc45.s39 100% | 969.2 KiB/s | 149.3 KiB | 00m00s [352/462] libXtst-devel-0:1.2.5-4.fc44. 100% | 70.9 KiB/s | 15.7 KiB | 00m00s [353/462] systemd-devel-0:261~rc3-3.fc4 100% | 4.2 MiB/s | 732.9 KiB | 00m00s [354/462] dbus-1:1.16.2-1.fc45.s390x 100% | 37.1 KiB/s | 7.4 KiB | 00m00s [355/462] brotli-devel-0:1.2.0-4.fc45.s 100% | 226.6 KiB/s | 34.4 KiB | 00m00s [356/462] xprop-0:1.2.8-5.fc44.s390x 100% | 152.3 KiB/s | 36.2 KiB | 00m00s [357/462] bzip2-devel-0:1.0.8-23.fc44.s 100% | 1.4 MiB/s | 213.6 KiB | 00m00s [358/462] libXau-devel-0:1.0.12-4.fc44. 100% | 62.2 KiB/s | 13.9 KiB | 00m00s [359/462] gettext-libs-0:1.0-1.fc45.s39 100% | 5.3 MiB/s | 848.3 KiB | 00m00s [360/462] lzo-minilzo-0:2.10-16.fc44.s3 100% | 86.8 KiB/s | 25.2 KiB | 00m00s [361/462] gettext-runtime-0:1.0-1.fc45. 100% | 1.2 MiB/s | 184.0 KiB | 00m00s [362/462] libtextstyle-0:1.0-1.fc45.s39 100% | 617.8 KiB/s | 93.9 KiB | 00m00s [363/462] libseccomp-devel-0:2.6.0-3.fc 100% | 409.3 KiB/s | 62.2 KiB | 00m00s [364/462] libblkid-devel-0:2.42.2-1.fc4 100% | 156.9 KiB/s | 24.0 KiB | 00m00s [365/462] lcms2-devel-0:2.16-7.fc44.s39 100% | 112.0 KiB/s | 31.8 KiB | 00m00s [366/462] libsepol-devel-0:3.10-1.fc44. 100% | 314.2 KiB/s | 48.1 KiB | 00m00s [367/462] pcre2-utf16-0:10.47-1.fc44.1. 100% | 1.7 MiB/s | 271.1 KiB | 00m00s [368/462] libgusb-0:0.4.9-5.fc44.s390x 100% | 233.5 KiB/s | 62.1 KiB | 00m00s [369/462] adwaita-cursor-theme-0:50.0-1 100% | 847.7 KiB/s | 380.6 KiB | 00m00s [370/462] avahi-glib-0:0.9~rc2-8.fc44.s 100% | 56.3 KiB/s | 14.9 KiB | 00m00s [371/462] json-glib-0:1.10.8-5.fc45.s39 100% | 618.8 KiB/s | 172.0 KiB | 00m00s [372/462] adwaita-icon-theme-legacy-0:4 100% | 2.9 MiB/s | 2.5 MiB | 00m01s [373/462] libstemmer-0:3.1.1-1.fc45.s39 100% | 528.3 KiB/s | 185.4 KiB | 00m00s [374/462] glfw-1:3.4-7.fc45.s390x 100% | 425.3 KiB/s | 136.1 KiB | 00m00s [375/462] graphite2-devel-0:1.3.14-20.f 100% | 86.1 KiB/s | 20.5 KiB | 00m00s [376/462] harfbuzz-cairo-0:14.2.1-4.fc4 100% | 125.2 KiB/s | 28.9 KiB | 00m00s [377/462] harfbuzz-gpu-0:14.2.1-4.fc45. 100% | 179.2 KiB/s | 49.6 KiB | 00m00s [378/462] harfbuzz-raster-0:14.2.1-4.fc 100% | 215.4 KiB/s | 54.9 KiB | 00m00s [379/462] harfbuzz-vector-0:14.2.1-4.fc 100% | 182.0 KiB/s | 55.1 KiB | 00m00s [380/462] libdatrie-devel-0:0.2.14-2.fc 100% | 612.8 KiB/s | 138.5 KiB | 00m00s [381/462] libGLEW-0:2.2.0-12.fc44.s390x 100% | 561.9 KiB/s | 182.6 KiB | 00m00s [382/462] mesa-libEGL-0:26.1.2-1.fc45.s 100% | 450.3 KiB/s | 137.3 KiB | 00m00s [383/462] libdecor-0:0.2.5-2.fc44.s390x 100% | 280.9 KiB/s | 58.4 KiB | 00m00s [384/462] libXxf86vm-0:1.1.6-4.fc44.s39 100% | 65.3 KiB/s | 17.6 KiB | 00m00s [385/462] alsa-lib-0:1.2.16.1-1.fc45.s3 100% | 3.0 MiB/s | 552.3 KiB | 00m00s [386/462] cdparanoia-libs-0:10.2-50.fc4 100% | 242.5 KiB/s | 58.2 KiB | 00m00s [387/462] graphene-0:1.10.8-4.fc44.s390 100% | 320.1 KiB/s | 71.7 KiB | 00m00s [388/462] libXv-0:1.0.13-4.fc44.s390x 100% | 58.3 KiB/s | 18.4 KiB | 00m00s [389/462] libgudev-0:238-9.fc44.s390x 100% | 149.7 KiB/s | 34.1 KiB | 00m00s [390/462] libogg-2:1.3.6-2.fc44.s390x 100% | 151.2 KiB/s | 34.3 KiB | 00m00s [391/462] mesa-dri-drivers-0:26.1.2-1.f 100% | 3.4 MiB/s | 4.1 MiB | 00m01s [392/462] libtheora-1:1.1.1-41.fc44.s39 100% | 605.2 KiB/s | 165.2 KiB | 00m00s [393/462] iso-codes-0:4.20.1-3.fc44.noa 100% | 3.5 MiB/s | 4.0 MiB | 00m01s [394/462] libvisual-1:0.4.2-4.fc44.s390 100% | 546.5 KiB/s | 153.6 KiB | 00m00s [395/462] libvorbis-1:1.3.7-20.fc45.s39 100% | 792.2 KiB/s | 210.7 KiB | 00m00s [396/462] orc-0:0.4.41-3.fc44.s390x 100% | 860.2 KiB/s | 235.7 KiB | 00m00s [397/462] opus-0:1.6-2.fc44.s390x 100% | 726.4 KiB/s | 268.8 KiB | 00m00s [398/462] libpciaccess-0:0.16-17.fc44.s 100% | 132.2 KiB/s | 26.7 KiB | 00m00s [399/462] gupnp-igd-0:1.6.0-8.fc45.s390 100% | 151.2 KiB/s | 33.3 KiB | 00m00s [400/462] mesa-filesystem-0:26.1.2-1.fc 100% | 61.8 KiB/s | 12.8 KiB | 00m00s [401/462] hunspell-0:1.7.2-12.fc45.s390 100% | 1.4 MiB/s | 488.0 KiB | 00m00s [402/462] libaom-0:3.13.3-2.fc45.s390x 100% | 5.8 MiB/s | 1.4 MiB | 00m00s [403/462] pulseaudio-libs-0:17.0-9.fc44 100% | 1.7 MiB/s | 713.4 KiB | 00m00s [404/462] rav1e-libs-0:0.8.1-3.fc44.s39 100% | 4.6 MiB/s | 835.4 KiB | 00m00s [405/462] libyuv-0:0-0.62.20260213git60 100% | 539.4 KiB/s | 144.6 KiB | 00m00s [406/462] svt-av1-libs-0:3.1.2-2.fc44.s 100% | 5.6 MiB/s | 1.0 MiB | 00m00s [407/462] hidapi-0:0.15.0-3.fc44.s390x 100% | 194.8 KiB/s | 48.3 KiB | 00m00s [408/462] libevdev-0:1.13.6-2.fc44.s390 100% | 214.6 KiB/s | 43.4 KiB | 00m00s [409/462] glib-networking-0:2.80.1-9.fc 100% | 809.4 KiB/s | 201.6 KiB | 00m00s [410/462] libheif-0:1.21.2-7.fc45.s390x 100% | 3.7 MiB/s | 663.3 KiB | 00m00s [411/462] google-noto-fonts-common-0:20 100% | 75.9 KiB/s | 17.0 KiB | 00m00s [412/462] perl-Class-Struct-0:0.68-524. 100% | 144.5 KiB/s | 22.0 KiB | 00m00s [413/462] perl-Pod-Escapes-1:1.07-521.f 100% | 129.4 KiB/s | 19.8 KiB | 00m00s [414/462] openblas-openmp-0:0.3.29-3.fc 100% | 13.7 MiB/s | 4.3 MiB | 00m00s [415/462] ncurses-0:6.6-2.fc45.s390x 100% | 2.7 MiB/s | 438.6 KiB | 00m00s [416/462] perl-IO-Socket-SSL-0:2.098-3. 100% | 1.5 MiB/s | 234.8 KiB | 00m00s [417/462] perl-Net-SSLeay-0:1.96-2.fc45 100% | 2.5 MiB/s | 393.4 KiB | 00m00s [418/462] perl-Time-HiRes-4:1.9778-521. 100% | 375.4 KiB/s | 57.1 KiB | 00m00s [419/462] perl-Time-Local-2:1.350-521.f 100% | 227.0 KiB/s | 34.5 KiB | 00m00s [420/462] brotli-0:1.2.0-4.fc45.s390x 100% | 158.3 KiB/s | 24.4 KiB | 00m00s [421/462] gettext-envsubst-0:1.0-1.fc45 100% | 253.8 KiB/s | 38.6 KiB | 00m00s [422/462] libxshmfence-0:1.3.2-8.fc44.s 100% | 59.6 KiB/s | 13.0 KiB | 00m00s [423/462] lm_sensors-libs-0:3.6.0-24.fc 100% | 159.2 KiB/s | 41.2 KiB | 00m00s [424/462] llvm-libs-0:22.1.7-1.fc45.s39 100% | 61.9 MiB/s | 34.3 MiB | 00m01s [425/462] gssdp-0:1.6.5-1.fc45.s390x 100% | 201.7 KiB/s | 58.7 KiB | 00m00s [426/462] hunspell-en-US-0:0.20260225-2 100% | 660.6 KiB/s | 171.1 KiB | 00m00s [427/462] gupnp-0:1.6.10-1.fc45.s390x 100% | 289.0 KiB/s | 104.9 KiB | 00m00s [428/462] hwdata-0:0.408-1.fc45.noarch 100% | 2.1 MiB/s | 1.7 MiB | 00m01s [429/462] hunspell-filesystem-0:1.7.2-1 100% | 36.5 KiB/s | 7.5 KiB | 00m00s [430/462] libasyncns-0:0.8-34.fc45.s390 100% | 129.3 KiB/s | 29.3 KiB | 00m00s [431/462] libsndfile-0:1.2.2-11.fc45.s3 100% | 841.9 KiB/s | 245.0 KiB | 00m00s [432/462] libproxy-0:0.5.12-2.fc44.s390 100% | 160.3 KiB/s | 43.9 KiB | 00m00s [433/462] libopenjph-0:0.29.0-1.fc45.s3 100% | 804.6 KiB/s | 142.4 KiB | 00m00s [434/462] gsettings-desktop-schemas-0:5 100% | 1.9 MiB/s | 864.1 KiB | 00m00s [435/462] noopenh264-0:2.6.0-4.fc44.s39 100% | 125.6 KiB/s | 21.9 KiB | 00m00s [436/462] openblas-0:0.3.29-3.fc45.s390 100% | 209.0 KiB/s | 42.0 KiB | 00m00s [437/462] perl-IO-Socket-IP-0:0.44-1.fc 100% | 277.1 KiB/s | 42.1 KiB | 00m00s [438/462] perl-URI-0:5.35-1.fc45.noarch 100% | 985.3 KiB/s | 150.8 KiB | 00m00s [439/462] perl-AutoLoader-0:5.74-524.fc 100% | 139.0 KiB/s | 21.1 KiB | 00m00s [440/462] libedit-0:3.1-59.20260512cvs. 100% | 769.7 KiB/s | 117.0 KiB | 00m00s [441/462] llvm-filesystem-0:22.1.7-1.fc 100% | 68.4 KiB/s | 10.4 KiB | 00m00s [442/462] gsm-0:1.0.24-2.fc45.s390x 100% | 149.2 KiB/s | 39.2 KiB | 00m00s [443/462] flac-libs-0:1.5.0-8.fc44.s390 100% | 672.1 KiB/s | 218.4 KiB | 00m00s [444/462] lame-libs-0:3.100-21.fc44.s39 100% | 970.6 KiB/s | 353.3 KiB | 00m00s [445/462] perl-MIME-Base32-0:1.303-25.f 100% | 135.0 KiB/s | 20.5 KiB | 00m00s [446/462] mpg123-libs-0:1.32.10-4.fc45. 100% | 1.1 MiB/s | 350.0 KiB | 00m00s [447/462] duktape-0:2.7.0-11.fc44.s390x 100% | 495.3 KiB/s | 172.9 KiB | 00m00s [448/462] perl-libnet-0:3.15-522.fc44.n 100% | 844.7 KiB/s | 128.4 KiB | 00m00s [449/462] perl-Digest-MD5-0:2.59-521.fc 100% | 232.6 KiB/s | 35.4 KiB | 00m00s [450/462] perl-FileHandle-0:2.05-524.fc 100% | 101.8 KiB/s | 15.4 KiB | 00m00s [451/462] perl-Digest-0:1.20-521.fc44.n 100% | 163.5 KiB/s | 24.9 KiB | 00m00s [452/462] python3-setuptools-0:82.0.1-3 100% | 10.6 MiB/s | 1.7 MiB | 00m00s [453/462] annobin-plugin-gcc-0:13.22-1. 100% | 4.3 MiB/s | 691.4 KiB | 00m00s [454/462] gcc-plugin-annobin-0:16.1.1-2 100% | 346.8 KiB/s | 52.7 KiB | 00m00s [455/462] annobin-docs-0:13.22-1.fc45.n 100% | 568.8 KiB/s | 87.0 KiB | 00m00s [456/462] systemd-rpm-macros-0:261~rc3- 100% | 118.8 KiB/s | 18.2 KiB | 00m00s [457/462] pyproject-rpm-macros-0:1.22.2 100% | 349.8 KiB/s | 53.2 KiB | 00m00s [458/462] python-rpm-macros-0:3.15-1.fc 100% | 130.7 KiB/s | 19.9 KiB | 00m00s [459/462] python3-rpm-generators-0:14-1 100% | 187.3 KiB/s | 28.5 KiB | 00m00s [460/462] python3-rpm-macros-0:3.15-1.f 100% | 81.1 KiB/s | 12.3 KiB | 00m00s [461/462] ninja-build-0:1.13.2-4.fc45.s 100% | 1.1 MiB/s | 197.2 KiB | 00m00s [462/462] cmake-rpm-macros-0:4.3.0-3.fc 100% | 53.9 KiB/s | 13.6 KiB | 00m00s -------------------------------------------------------------------------------- [462/462] Total 100% | 8.1 MiB/s | 366.6 MiB | 00m45s Running transaction [ 1/464] Verify package files 100% | 544.0 B/s | 462.0 B | 00m01s [ 2/464] Prepare transaction 100% | 1.3 KiB/s | 462.0 B | 00m00s [ 3/464] Installing glib2-0:2.89.0-1.f 100% | 193.4 MiB/s | 15.5 MiB | 00m00s [ 4/464] Installing xorg-x11-proto-dev 100% | 224.5 MiB/s | 1.8 MiB | 00m00s [ 5/464] Installing boost-container-0: 100% | 68.3 MiB/s | 69.9 KiB | 00m00s [ 6/464] Installing libicu-0:78.3-3.fc 100% | 275.9 MiB/s | 38.1 MiB | 00m00s [ 7/464] Installing libjpeg-turbo-0:3. 100% | 215.4 MiB/s | 882.2 KiB | 00m00s [ 8/464] Installing expat-0:2.8.1-1.fc 100% | 13.1 MiB/s | 349.0 KiB | 00m00s [ 9/464] Installing libwayland-client- 100% | 69.2 MiB/s | 70.8 KiB | 00m00s [ 10/464] Installing boost-date-time-0: 100% | 0.0 B/s | 8.8 KiB | 00m00s [ 11/464] Installing libpng-2:1.6.58-1. 100% | 252.6 MiB/s | 258.7 KiB | 00m00s [ 12/464] Installing boost-chrono-0:1.9 100% | 0.0 B/s | 38.0 KiB | 00m00s [ 13/464] Installing boost-atomic-0:1.9 100% | 0.0 B/s | 17.4 KiB | 00m00s [ 14/464] Installing lcms2-0:2.16-7.fc4 100% | 223.7 MiB/s | 458.2 KiB | 00m00s [ 15/464] Installing cmake-filesystem-0 100% | 9.1 MiB/s | 9.4 KiB | 00m00s [ 16/464] Installing zlib-ng-compat-dev 100% | 106.0 MiB/s | 108.6 KiB | 00m00s [ 17/464] Installing boost-thread-0:1.9 100% | 121.2 MiB/s | 124.1 KiB | 00m00s [ 18/464] Installing dbus-libs-1:1.16.2 100% | 178.9 MiB/s | 366.5 KiB | 00m00s [ 19/464] Installing boost-filesystem-0 100% | 148.0 MiB/s | 151.5 KiB | 00m00s [ 20/464] Installing boost-regex-0:1.90 100% | 295.5 MiB/s | 302.6 KiB | 00m00s [ 21/464] Installing libogg-2:1.3.6-2.f 100% | 0.0 B/s | 50.9 KiB | 00m00s [ 22/464] Installing libglvnd-1:1.7.0-9 100% | 285.1 MiB/s | 875.9 KiB | 00m00s [ 23/464] Installing libX11-xcb-0:1.8.1 100% | 0.0 B/s | 7.4 KiB | 00m00s [ 24/464] Installing fonts-filesystem-1 100% | 0.0 B/s | 788.0 B | 00m00s [ 25/464] Installing urw-base35-fonts-c 100% | 0.0 B/s | 38.4 KiB | 00m00s [ 26/464] Installing boost-context-0:1. 100% | 0.0 B/s | 13.1 KiB | 00m00s [ 27/464] Installing libpng-devel-2:1.6 100% | 29.8 MiB/s | 914.5 KiB | 00m00s [ 28/464] Installing libwayland-cursor- 100% | 0.0 B/s | 38.1 KiB | 00m00s [ 29/464] Installing libseccomp-0:2.6.0 100% | 236.8 MiB/s | 242.5 KiB | 00m00s [ 30/464] Installing fribidi-0:1.0.16-4 100% | 7.4 MiB/s | 196.0 KiB | 00m00s [ 31/464] Installing libepoxy-0:1.5.10- 100% | 328.0 MiB/s | 1.3 MiB | 00m00s [ 32/464] Installing libwebp-0:1.6.0-3. 100% | 139.7 MiB/s | 715.3 KiB | 00m00s [ 33/464] Installing ruby-libs-0:4.0.5- 100% | 224.3 MiB/s | 13.7 MiB | 00m00s [ 34/464] Installing boost-graph-0:1.90 100% | 184.6 MiB/s | 378.1 KiB | 00m00s [ 35/464] Installing avahi-libs-0:0.9~r 100% | 81.9 MiB/s | 167.8 KiB | 00m00s [ 36/464] Installing shared-mime-info-0 100% | 66.0 MiB/s | 2.6 MiB | 00m00s [ 37/464] Installing libjxl-1:0.11.2-1. 100% | 251.8 MiB/s | 2.8 MiB | 00m00s [ 38/464] Installing python-rpm-macros- 100% | 0.0 B/s | 28.9 KiB | 00m00s [ 39/464] Installing dbus-1:1.16.2-1.fc 100% | 0.0 B/s | 124.0 B | 00m00s [ 40/464] Installing libwayland-egl-0:1 100% | 0.0 B/s | 9.2 KiB | 00m00s [ 41/464] Installing libdav1d-0:1.5.3-1 100% | 104.6 MiB/s | 642.4 KiB | 00m00s [ 42/464] Installing xml-common-0:0.6.3 100% | 79.2 MiB/s | 81.1 KiB | 00m00s [ 43/464] Installing boost-serializatio 100% | 230.3 MiB/s | 471.7 KiB | 00m00s [ 44/464] Installing boost-random-0:1.9 100% | 0.0 B/s | 30.1 KiB | 00m00s [ 45/464] Installing openjpeg-0:2.5.4-3 100% | 159.5 MiB/s | 490.0 KiB | 00m00s [ 46/464] Installing libICE-0:1.1.2-4.f 100% | 198.6 MiB/s | 203.4 KiB | 00m00s [ 47/464] Installing libSM-0:1.2.5-4.fc 100% | 103.6 MiB/s | 106.1 KiB | 00m00s [ 48/464] Installing libmpc-0:1.4.1-1.f 100% | 162.3 MiB/s | 166.2 KiB | 00m00s [ 49/464] Installing python3-rpm-macros 100% | 0.0 B/s | 6.8 KiB | 00m00s [ 50/464] Installing ruby-0:4.0.5-33.fc 100% | 3.4 MiB/s | 95.3 KiB | 00m00s [ 51/464] Installing rubypick-0:1.1.1-2 100% | 204.8 KiB/s | 5.1 KiB | 00m00s [ 52/464] Installing fribidi-devel-0:1. 100% | 80.0 MiB/s | 81.9 KiB | 00m00s [ 53/464] Installing libglvnd-opengl-1: 100% | 204.8 MiB/s | 209.7 KiB | 00m00s [ 54/464] Installing libvorbis-1:1.3.7- 100% | 218.5 MiB/s | 895.0 KiB | 00m00s [ 55/464] Installing libicu-devel-0:78. 100% | 113.6 MiB/s | 5.2 MiB | 00m00s [ 56/464] Installing javascriptcoregtk4 100% | 310.1 MiB/s | 19.5 MiB | 00m00s [ 57/464] Installing libsecret-0:0.21.7 100% | 19.8 MiB/s | 609.0 KiB | 00m00s [ 58/464] Installing libcloudproviders- 100% | 126.9 MiB/s | 130.0 KiB | 00m00s [ 59/464] Installing json-glib-0:1.10.8 100% | 149.4 MiB/s | 612.1 KiB | 00m00s [ 60/464] Installing libgudev-0:238-9.f 100% | 82.9 MiB/s | 84.9 KiB | 00m00s [ 61/464] Installing hunspell-filesyste 100% | 0.0 B/s | 388.0 B | 00m00s [ 62/464] Installing svt-av1-libs-0:3.1 100% | 245.1 MiB/s | 2.7 MiB | 00m00s [ 63/464] Installing rav1e-libs-0:0.8.1 100% | 229.9 MiB/s | 2.3 MiB | 00m00s [ 64/464] Installing libaom-0:3.13.3-2. 100% | 229.3 MiB/s | 3.4 MiB | 00m00s [ 65/464] Installing mesa-filesystem-0: 100% | 0.0 B/s | 4.3 KiB | 00m00s [ 66/464] Installing opus-0:1.6-2.fc44. 100% | 226.7 MiB/s | 464.3 KiB | 00m00s [ 67/464] Installing libtextstyle-0:1.0 100% | 210.6 MiB/s | 215.6 KiB | 00m00s [ 68/464] Installing gettext-libs-0:1.0 100% | 220.2 MiB/s | 2.4 MiB | 00m00s [ 69/464] Installing libgfortran-0:16.1 100% | 274.9 MiB/s | 2.5 MiB | 00m00s [ 70/464] Installing libdatrie-0:0.2.14 100% | 57.2 MiB/s | 58.6 KiB | 00m00s [ 71/464] Installing libthai-0:0.1.30-2 100% | 261.2 MiB/s | 802.4 KiB | 00m00s [ 72/464] Installing libXau-0:1.0.12-4. 100% | 68.4 MiB/s | 70.1 KiB | 00m00s [ 73/464] Installing libxcb-0:1.17.0-7. 100% | 187.7 MiB/s | 1.1 MiB | 00m00s [ 74/464] Installing bubblewrap-0:0.11. 100% | 5.1 MiB/s | 140.7 KiB | 00m00s [ 75/464] Installing libwayland-server- 100% | 93.1 MiB/s | 95.4 KiB | 00m00s [ 76/464] Installing libffi-devel-0:3.5 100% | 30.8 MiB/s | 31.5 KiB | 00m00s [ 77/464] Installing adobe-mappings-cma 100% | 253.2 MiB/s | 15.2 MiB | 00m00s [ 78/464] Installing graphite2-0:1.3.14 100% | 7.6 MiB/s | 201.0 KiB | 00m00s [ 79/464] Installing harfbuzz-0:14.2.1- 100% | 236.8 MiB/s | 2.8 MiB | 00m00s [ 80/464] Installing freetype-0:2.14.3- 100% | 189.9 MiB/s | 972.2 KiB | 00m00s [ 81/464] Installing harfbuzz-icu-0:14. 100% | 0.0 B/s | 11.9 KiB | 00m00s [ 82/464] Installing pixman-0:0.46.2-3. 100% | 184.0 MiB/s | 565.3 KiB | 00m00s [ 83/464] Installing pixman-devel-0:0.4 100% | 0.0 B/s | 56.9 KiB | 00m00s [ 84/464] Installing lzo-0:2.10-16.fc44 100% | 195.5 MiB/s | 200.2 KiB | 00m00s [ 85/464] Installing pcre2-utf32-0:10.4 100% | 210.8 MiB/s | 647.6 KiB | 00m00s [ 86/464] Installing wxBase-0:3.2.9-2.f 100% | 215.3 MiB/s | 3.0 MiB | 00m00s [ 87/464] Installing vim-filesystem-2:9 100% | 4.7 MiB/s | 4.8 KiB | 00m00s [ 88/464] Installing boost-charconv-0:1 100% | 174.0 MiB/s | 178.2 KiB | 00m00s [ 89/464] Installing jbigkit-libs-0:2.1 100% | 115.9 MiB/s | 118.7 KiB | 00m00s [ 90/464] Installing imath-0:3.1.12-7.f 100% | 180.4 MiB/s | 369.5 KiB | 00m00s [ 91/464] Installing emacs-filesystem-1 100% | 0.0 B/s | 812.0 B | 00m00s [ 92/464] Installing make-1:4.4.1-12.fc 100% | 54.7 MiB/s | 1.9 MiB | 00m00s [ 93/464] Installing boost-locale-0:1.9 100% | 138.4 MiB/s | 708.5 KiB | 00m00s [ 94/464] Installing wxBase-devel-0:3.2 100% | 103.0 MiB/s | 6.8 MiB | 00m00s [ 95/464] Installing libraqm-0:0.10.1-4 100% | 32.6 MiB/s | 33.3 KiB | 00m00s [ 96/464] Installing harfbuzz-gpu-0:14. 100% | 164.8 MiB/s | 168.8 KiB | 00m00s [ 97/464] Installing harfbuzz-raster-0: 100% | 94.6 MiB/s | 96.9 KiB | 00m00s [ 98/464] Installing harfbuzz-vector-0: 100% | 103.2 MiB/s | 105.6 KiB | 00m00s [ 99/464] Installing graphite2-devel-0: 100% | 0.0 B/s | 50.8 KiB | 00m00s [100/464] Installing adobe-mappings-cma 100% | 190.5 MiB/s | 585.2 KiB | 00m00s [101/464] Installing wayland-devel-0:1. 100% | 24.3 MiB/s | 696.1 KiB | 00m00s [102/464] Installing libXau-devel-0:1.0 100% | 1.3 MiB/s | 9.1 KiB | 00m00s [103/464] Installing libxcb-devel-0:1.1 100% | 65.6 MiB/s | 3.0 MiB | 00m00s [104/464] Installing libdatrie-devel-0: 100% | 19.2 MiB/s | 570.4 KiB | 00m00s [105/464] Installing libthai-devel-0:0. 100% | 162.0 MiB/s | 663.6 KiB | 00m00s [106/464] Installing hunspell-en-US-0:0 100% | 247.7 MiB/s | 507.4 KiB | 00m00s [107/464] Installing hunspell-0:1.7.2-1 100% | 42.1 MiB/s | 1.3 MiB | 00m00s [108/464] Installing enchant2-0:2.8.16- 100% | 8.2 MiB/s | 209.8 KiB | 00m00s [109/464] Installing libgusb-0:0.4.9-5. 100% | 159.5 MiB/s | 163.3 KiB | 00m00s [110/464] Installing colord-libs-0:1.4. 100% | 207.0 MiB/s | 848.0 KiB | 00m00s [111/464] Installing mesa-libGLU-0:9.0. 100% | 198.3 MiB/s | 406.1 KiB | 00m00s [112/464] Installing pyproject-rpm-macr 100% | 146.0 MiB/s | 149.5 KiB | 00m00s [113/464] Installing cpp-0:16.1.1-2.fc4 100% | 211.0 MiB/s | 30.6 MiB | 00m00s [114/464] Installing boost-iostreams-0: 100% | 92.5 MiB/s | 94.7 KiB | 00m00s [115/464] Installing boost-math-0:1.90. 100% | 203.6 MiB/s | 625.6 KiB | 00m00s [116/464] Installing boost-log-0:1.90.0 100% | 254.7 MiB/s | 1.5 MiB | 00m00s [117/464] Installing boost-wave-0:1.90. 100% | 161.2 MiB/s | 990.6 KiB | 00m00s [118/464] Installing iso-codes-0:4.20.1 100% | 232.3 MiB/s | 22.5 MiB | 00m00s [119/464] Installing xdg-dbus-proxy-0:0 100% | 3.5 MiB/s | 92.0 KiB | 00m00s [120/464] Installing avahi-glib-0:0.9~r 100% | 0.0 B/s | 16.0 KiB | 00m00s [121/464] Installing libseccomp-devel-0 100% | 4.5 MiB/s | 120.2 KiB | 00m00s [122/464] Installing boost-cobalt-0:1.9 100% | 205.7 MiB/s | 632.0 KiB | 00m00s [123/464] Installing boost-coroutine-0: 100% | 0.0 B/s | 21.7 KiB | 00m00s [124/464] Installing boost-fiber-0:1.90 100% | 89.0 MiB/s | 91.1 KiB | 00m00s [125/464] Installing boost-process-0:1. 100% | 72.6 MiB/s | 74.3 KiB | 00m00s [126/464] Installing urw-base35-bookman 100% | 341.2 MiB/s | 1.4 MiB | 00m00s [127/464] Installing urw-base35-c059-fo 100% | 348.8 MiB/s | 1.4 MiB | 00m00s [128/464] Installing urw-base35-d050000 100% | 0.0 B/s | 85.4 KiB | 00m00s [129/464] Installing urw-base35-gothic- 100% | 290.7 MiB/s | 1.2 MiB | 00m00s [130/464] Installing urw-base35-nimbus- 100% | 350.6 MiB/s | 1.1 MiB | 00m00s [131/464] Installing urw-base35-nimbus- 100% | 273.2 MiB/s | 1.4 MiB | 00m00s [132/464] Installing urw-base35-nimbus- 100% | 299.3 MiB/s | 2.4 MiB | 00m00s [133/464] Installing urw-base35-p052-fo 100% | 297.5 MiB/s | 1.5 MiB | 00m00s [134/464] Installing urw-base35-standar 100% | 0.0 B/s | 66.0 KiB | 00m00s [135/464] Installing urw-base35-z003-fo 100% | 382.6 MiB/s | 391.8 KiB | 00m00s [136/464] Installing urw-base35-fonts-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [137/464] Installing google-droid-sans- 100% | 223.5 MiB/s | 6.3 MiB | 00m00s [138/464] Installing abattis-cantarell- 100% | 189.9 MiB/s | 194.4 KiB | 00m00s [139/464] Installing libtheora-1:1.1.1- 100% | 215.8 MiB/s | 442.1 KiB | 00m00s [140/464] Installing flac-libs-0:1.5.0- 100% | 194.4 MiB/s | 597.3 KiB | 00m00s [141/464] Installing boost-contract-0:1 100% | 108.6 MiB/s | 111.2 KiB | 00m00s [142/464] Installing boost-type_erasure 100% | 57.3 MiB/s | 58.6 KiB | 00m00s [143/464] Installing LibRaw-0:0.22.1-1. 100% | 344.2 MiB/s | 2.8 MiB | 00m00s [144/464] Installing lcms2-devel-0:2.16 100% | 0.0 B/s | 136.4 KiB | 00m00s [145/464] Installing boost-timer-0:1.90 100% | 0.0 B/s | 21.5 KiB | 00m00s [146/464] Installing graphviz-libs-0:15 100% | 229.1 MiB/s | 1.4 MiB | 00m00s [147/464] Installing libultrahdr-0:1.4. 100% | 176.3 MiB/s | 361.0 KiB | 00m00s [148/464] Installing libyuv-0:0-0.62.20 100% | 204.3 MiB/s | 418.5 KiB | 00m00s [149/464] Installing libavif-0:1.3.0-4. 100% | 260.5 MiB/s | 266.7 KiB | 00m00s [150/464] Installing boost-json-0:1.90. 100% | 193.7 MiB/s | 396.7 KiB | 00m00s [151/464] Installing boost-program-opti 100% | 140.6 MiB/s | 288.0 KiB | 00m00s [152/464] Installing liblqr-1-0:0.4.2-2 100% | 103.7 MiB/s | 106.2 KiB | 00m00s [153/464] Installing graphene-0:1.10.8- 100% | 93.7 MiB/s | 191.9 KiB | 00m00s [154/464] Installing gsettings-desktop- 100% | 266.5 MiB/s | 6.1 MiB | 00m00s [155/464] Installing annobin-docs-0:13. 100% | 0.0 B/s | 100.7 KiB | 00m00s [156/464] Installing duktape-0:2.7.0-11 100% | 356.2 MiB/s | 729.5 KiB | 00m00s [157/464] Installing libproxy-0:0.5.12- 100% | 101.3 MiB/s | 103.8 KiB | 00m00s [158/464] Installing glib-networking-0: 100% | 122.5 MiB/s | 752.8 KiB | 00m00s [159/464] Installing libsoup3-0:3.6.6-1 100% | 175.1 MiB/s | 1.2 MiB | 00m00s [160/464] Installing gssdp-0:1.6.5-1.fc 100% | 149.1 MiB/s | 152.7 KiB | 00m00s [161/464] Installing gupnp-0:1.6.10-1.f 100% | 157.0 MiB/s | 321.6 KiB | 00m00s [162/464] Installing gupnp-igd-0:1.6.0- 100% | 70.5 MiB/s | 72.2 KiB | 00m00s [163/464] Installing libnice-0:0.1.23-2 100% | 16.3 MiB/s | 500.0 KiB | 00m00s [164/464] Installing mpg123-libs-0:1.32 100% | 207.9 MiB/s | 851.5 KiB | 00m00s [165/464] Installing lame-libs-0:3.100- 100% | 134.4 MiB/s | 1.2 MiB | 00m00s [166/464] Installing gsm-0:1.0.24-2.fc4 100% | 61.5 MiB/s | 63.0 KiB | 00m00s [167/464] Installing libsndfile-0:1.2.2 100% | 201.6 MiB/s | 619.3 KiB | 00m00s [168/464] Installing llvm-filesystem-0: 100% | 0.0 B/s | 1.1 KiB | 00m00s [169/464] Installing libedit-0:3.1-59.2 100% | 135.6 MiB/s | 277.7 KiB | 00m00s [170/464] Installing llvm-libs-0:22.1.7 100% | 327.1 MiB/s | 153.4 MiB | 00m00s [171/464] Installing openblas-0:0.3.29- 100% | 110.8 MiB/s | 113.5 KiB | 00m00s [172/464] Installing openblas-openmp-0: 100% | 285.0 MiB/s | 15.1 MiB | 00m00s [173/464] Installing flexiblas-netlib-0 100% | 199.5 MiB/s | 17.2 MiB | 00m00s [174/464] Installing flexiblas-0:3.5.0- 100% | 0.0 B/s | 39.2 KiB | 00m00s [175/464] Installing flexiblas-openblas 100% | 0.0 B/s | 39.7 KiB | 00m00s [176/464] Installing noopenh264-0:2.6.0 100% | 0.0 B/s | 36.4 KiB | 00m00s [177/464] Installing libopenjph-0:0.29. 100% | 173.2 MiB/s | 354.7 KiB | 00m00s [178/464] Installing libheif-0:1.21.2-7 100% | 258.8 MiB/s | 1.8 MiB | 00m00s [179/464] Installing libasyncns-0:0.8-3 100% | 55.1 MiB/s | 56.4 KiB | 00m00s [180/464] Installing pulseaudio-libs-0: 100% | 245.7 MiB/s | 3.4 MiB | 00m00s [181/464] Installing flite-0:2.2-13.fc4 100% | 229.3 MiB/s | 25.2 MiB | 00m00s [182/464] Installing hwdata-0:0.408-1.f 100% | 368.9 MiB/s | 10.0 MiB | 00m00s [183/464] Installing libpciaccess-0:0.1 100% | 44.5 MiB/s | 45.6 KiB | 00m00s [184/464] Installing libdrm-0:2.4.134-1 100% | 207.3 MiB/s | 424.4 KiB | 00m00s [185/464] Installing lm_sensors-libs-0: 100% | 84.5 MiB/s | 86.5 KiB | 00m00s [186/464] Installing libxshmfence-0:1.3 100% | 0.0 B/s | 13.2 KiB | 00m00s [187/464] Installing mesa-dri-drivers-0 100% | 334.8 MiB/s | 20.1 MiB | 00m00s [188/464] Installing mesa-libgbm-0:26.1 100% | 0.0 B/s | 20.0 KiB | 00m00s [189/464] Installing gettext-envsubst-0 100% | 2.8 MiB/s | 71.7 KiB | 00m00s [190/464] Installing gettext-runtime-0: 100% | 24.3 MiB/s | 721.4 KiB | 00m00s [191/464] Installing brotli-0:1.2.0-4.f 100% | 1.3 MiB/s | 34.1 KiB | 00m00s [192/464] Installing brotli-devel-0:1.2 100% | 66.8 MiB/s | 68.4 KiB | 00m00s [193/464] Installing ncurses-0:6.6-2.fc 100% | 22.7 MiB/s | 628.3 KiB | 00m00s [194/464] Installing google-noto-fonts- 100% | 0.0 B/s | 18.5 KiB | 00m00s [195/464] Installing google-noto-sans-v 100% | 231.9 MiB/s | 1.4 MiB | 00m00s [196/464] Installing default-fonts-core 100% | 17.8 MiB/s | 18.2 KiB | 00m00s [197/464] Installing fontconfig-0:2.17. 100% | 651.1 KiB/s | 797.5 KiB | 00m01s [198/464] Installing libevdev-0:1.13.6- 100% | 60.0 MiB/s | 122.8 KiB | 00m00s [199/464] Installing hidapi-0:0.15.0-3. 100% | 109.5 MiB/s | 112.1 KiB | 00m00s [200/464] Installing libmanette-0:0.2.1 100% | 363.8 MiB/s | 372.5 KiB | 00m00s [201/464] Installing orc-0:0.4.41-3.fc4 100% | 29.6 MiB/s | 880.0 KiB | 00m00s [202/464] Installing libvisual-1:0.4.2- 100% | 231.8 MiB/s | 474.8 KiB | 00m00s [203/464] Installing cdparanoia-libs-0: 100% | 115.4 MiB/s | 118.2 KiB | 00m00s [204/464] Installing alsa-lib-0:1.2.16. 100% | 47.2 MiB/s | 1.6 MiB | 00m00s [205/464] Installing glfw-1:3.4-7.fc45. 100% | 208.2 MiB/s | 426.3 KiB | 00m00s [206/464] Installing libstemmer-0:3.1.1 100% | 312.1 MiB/s | 958.7 KiB | 00m00s [207/464] Installing libtinysparql-0:3. 100% | 116.6 MiB/s | 1.0 MiB | 00m00s [208/464] Installing adwaita-icon-theme 100% | 57.3 MiB/s | 2.4 MiB | 00m00s [209/464] Installing adwaita-cursor-the 100% | 439.6 MiB/s | 11.4 MiB | 00m00s [210/464] Installing adwaita-icon-theme 100% | 74.0 MiB/s | 1.3 MiB | 00m00s [211/464] Installing pcre2-utf16-0:10.4 100% | 221.2 MiB/s | 679.6 KiB | 00m00s [212/464] Installing pcre2-devel-0:10.4 100% | 60.6 MiB/s | 2.1 MiB | 00m00s [213/464] Installing libsepol-devel-0:3 100% | 63.0 MiB/s | 129.0 KiB | 00m00s [214/464] Installing libselinux-devel-0 100% | 38.3 MiB/s | 156.9 KiB | 00m00s [215/464] Installing libblkid-devel-0:2 100% | 0.0 B/s | 46.2 KiB | 00m00s [216/464] Installing libmount-devel-0:2 100% | 0.0 B/s | 67.4 KiB | 00m00s [217/464] Installing lzo-minilzo-0:2.10 100% | 40.7 MiB/s | 41.7 KiB | 00m00s [218/464] Installing lzo-devel-0:2.10-1 100% | 210.2 MiB/s | 215.3 KiB | 00m00s [219/464] Installing bzip2-devel-0:1.0. 100% | 101.2 MiB/s | 310.7 KiB | 00m00s [220/464] Installing systemd-devel-0:26 100% | 57.5 MiB/s | 764.9 KiB | 00m00s [221/464] Installing dbus-devel-1:1.16. 100% | 19.0 MiB/s | 136.5 KiB | 00m00s [222/464] Installing groff-base-0:1.24. 100% | 87.2 MiB/s | 4.6 MiB | 00m00s [223/464] Installing perl-Digest-0:1.20 100% | 36.2 MiB/s | 37.1 KiB | 00m00s [224/464] Installing perl-Digest-MD5-0: 100% | 55.9 MiB/s | 57.2 KiB | 00m00s [225/464] Installing perl-FileHandle-0: 100% | 0.0 B/s | 9.8 KiB | 00m00s [226/464] Installing perl-B-0:1.89-524. 100% | 169.4 MiB/s | 520.3 KiB | 00m00s [227/464] Installing perl-libnet-0:3.15 100% | 143.9 MiB/s | 294.7 KiB | 00m00s [228/464] Installing perl-MIME-Base32-0 100% | 0.0 B/s | 32.2 KiB | 00m00s [229/464] Installing perl-Data-Dumper-0 100% | 110.5 MiB/s | 113.2 KiB | 00m00s [230/464] Installing perl-URI-0:5.35-1. 100% | 91.8 MiB/s | 282.0 KiB | 00m00s [231/464] Installing perl-AutoLoader-0: 100% | 0.0 B/s | 21.0 KiB | 00m00s [232/464] Installing perl-IO-Socket-IP- 100% | 99.9 MiB/s | 102.3 KiB | 00m00s [233/464] Installing perl-File-Path-0:2 100% | 63.0 MiB/s | 64.5 KiB | 00m00s [234/464] Installing perl-IO-Socket-SSL 100% | 236.8 MiB/s | 727.6 KiB | 00m00s [235/464] Installing perl-Net-SSLeay-0: 100% | 205.4 MiB/s | 1.4 MiB | 00m00s [236/464] Installing perl-Time-Local-2: 100% | 68.9 MiB/s | 70.6 KiB | 00m00s [237/464] Installing perl-Time-HiRes-4: 100% | 114.7 MiB/s | 117.4 KiB | 00m00s [238/464] Installing perl-Pod-Escapes-1 100% | 0.0 B/s | 25.9 KiB | 00m00s [239/464] Installing perl-locale-0:1.13 100% | 0.0 B/s | 6.5 KiB | 00m00s [240/464] Installing perl-if-0:0.61.000 100% | 0.0 B/s | 6.2 KiB | 00m00s [241/464] Installing perl-Text-Tabs+Wra 100% | 0.0 B/s | 23.9 KiB | 00m00s [242/464] Installing perl-File-Temp-1:0 100% | 161.6 MiB/s | 165.5 KiB | 00m00s [243/464] Installing perl-Pod-Simple-1: 100% | 187.3 MiB/s | 575.5 KiB | 00m00s [244/464] Installing perl-HTTP-Tiny-0:0 100% | 160.6 MiB/s | 164.5 KiB | 00m00s [245/464] Installing perl-Class-Struct- 100% | 0.0 B/s | 25.9 KiB | 00m00s [246/464] Installing perl-IPC-Open3-0:1 100% | 0.0 B/s | 28.5 KiB | 00m00s [247/464] Installing perl-Term-Cap-0:1. 100% | 0.0 B/s | 30.6 KiB | 00m00s [248/464] Installing perl-Term-ANSIColo 100% | 96.9 MiB/s | 99.2 KiB | 00m00s [249/464] Installing perl-POSIX-0:2.23- 100% | 236.6 MiB/s | 242.3 KiB | 00m00s [250/464] Installing perl-Pod-Perldoc-0 100% | 5.9 MiB/s | 169.2 KiB | 00m00s [251/464] Installing perl-podlators-1:6 100% | 12.1 MiB/s | 321.4 KiB | 00m00s [252/464] Installing perl-File-stat-0:1 100% | 0.0 B/s | 13.1 KiB | 00m00s [253/464] Installing perl-Socket-4:2.04 100% | 123.5 MiB/s | 126.5 KiB | 00m00s [254/464] Installing perl-SelectSaver-0 100% | 0.0 B/s | 2.6 KiB | 00m00s [255/464] Installing perl-Symbol-0:1.09 100% | 0.0 B/s | 7.3 KiB | 00m00s [256/464] Installing perl-Pod-Usage-4:2 100% | 3.4 MiB/s | 87.9 KiB | 00m00s [257/464] Installing perl-IO-0:1.55-524 100% | 73.9 MiB/s | 151.3 KiB | 00m00s [258/464] Installing perl-Fcntl-0:1.20- 100% | 0.0 B/s | 49.5 KiB | 00m00s [259/464] Installing perl-overloading-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [260/464] Installing perl-mro-0:1.29-52 100% | 0.0 B/s | 42.3 KiB | 00m00s [261/464] Installing perl-base-0:2.27-5 100% | 0.0 B/s | 13.0 KiB | 00m00s [262/464] Installing perl-Text-ParseWor 100% | 0.0 B/s | 14.6 KiB | 00m00s [263/464] Installing perl-Getopt-Long-1 100% | 143.8 MiB/s | 147.2 KiB | 00m00s [264/464] Installing perl-Storable-1:3. 100% | 223.0 MiB/s | 228.4 KiB | 00m00s [265/464] Installing perl-parent-1:0.24 100% | 0.0 B/s | 11.0 KiB | 00m00s [266/464] Installing perl-MIME-Base64-0 100% | 46.8 MiB/s | 47.9 KiB | 00m00s [267/464] Installing perl-Getopt-Std-0: 100% | 0.0 B/s | 11.8 KiB | 00m00s [268/464] Installing perl-overload-0:1. 100% | 0.0 B/s | 72.0 KiB | 00m00s [269/464] Installing perl-Scalar-List-U 100% | 144.8 MiB/s | 148.2 KiB | 00m00s [270/464] Installing perl-Errno-0:1.38- 100% | 0.0 B/s | 8.8 KiB | 00m00s [271/464] Installing perl-constant-0:1. 100% | 0.0 B/s | 27.4 KiB | 00m00s [272/464] Installing perl-File-Basename 100% | 0.0 B/s | 14.6 KiB | 00m00s [273/464] Installing perl-vars-0:1.05-5 100% | 0.0 B/s | 4.3 KiB | 00m00s [274/464] Installing perl-Encode-4:3.24 100% | 165.0 MiB/s | 9.6 MiB | 00m00s [275/464] Installing perl-DynaLoader-0: 100% | 0.0 B/s | 32.5 KiB | 00m00s [276/464] Installing perl-PathTools-0:3 100% | 176.0 MiB/s | 180.2 KiB | 00m00s [277/464] Installing perl-Exporter-0:5. 100% | 0.0 B/s | 55.6 KiB | 00m00s [278/464] Installing perl-Carp-0:1.54-5 100% | 23.3 MiB/s | 47.7 KiB | 00m00s [279/464] Installing perl-libs-4:5.42.2 100% | 213.6 MiB/s | 12.0 MiB | 00m00s [280/464] Installing perl-interpreter-4 100% | 4.5 MiB/s | 120.1 KiB | 00m00s [281/464] Installing perl-File-Find-0:1 100% | 0.0 B/s | 42.5 KiB | 00m00s [282/464] Installing perl-File-Copy-0:2 100% | 0.0 B/s | 20.2 KiB | 00m00s [283/464] Installing perl-File-Compare- 100% | 0.0 B/s | 6.2 KiB | 00m00s [284/464] Installing perl-ExtUtils-Comm 100% | 0.0 B/s | 10.2 KiB | 00m00s [285/464] Installing perl-ExtUtils-Mani 100% | 84.3 MiB/s | 86.3 KiB | 00m00s [286/464] Installing perl-macros-4:5.42 100% | 0.0 B/s | 5.8 KiB | 00m00s [287/464] Installing perl-Devel-PPPort- 100% | 296.8 MiB/s | 911.9 KiB | 00m00s [288/464] Installing perl-ExtUtils-Cons 100% | 85.7 MiB/s | 87.7 KiB | 00m00s [289/464] Installing perl-Fedora-VSP-0: 100% | 0.0 B/s | 40.6 KiB | 00m00s [290/464] Installing perl-AutoSplit-0:5 100% | 0.0 B/s | 23.6 KiB | 00m00s [291/464] Installing perl-lib-0:0.65-52 100% | 0.0 B/s | 8.9 KiB | 00m00s [292/464] Installing perl-version-9:0.9 100% | 128.2 MiB/s | 131.3 KiB | 00m00s [293/464] Installing perl-Benchmark-0:1 100% | 18.0 MiB/s | 36.8 KiB | 00m00s [294/464] Installing perl-Test-Harness- 100% | 19.0 MiB/s | 583.6 KiB | 00m00s [295/464] Installing perl-Hash-Util-Fie 100% | 58.5 MiB/s | 59.9 KiB | 00m00s [296/464] Installing perl-Hash-Util-0:0 100% | 0.0 B/s | 56.0 KiB | 00m00s [297/464] Installing perl-fields-0:2.27 100% | 0.0 B/s | 12.3 KiB | 00m00s [298/464] Installing perl-ExtUtils-Pars 100% | 25.4 MiB/s | 727.4 KiB | 00m00s [299/464] Installing perl-ExtUtils-Inst 100% | 85.1 MiB/s | 87.2 KiB | 00m00s [300/464] Installing perl-ExtUtils-Make 100% | 25.3 MiB/s | 750.4 KiB | 00m00s [301/464] Installing cups-filesystem-1: 100% | 0.0 B/s | 1.8 KiB | 00m00s [302/464] Installing cups-libs-1:2.4.19 100% | 234.4 MiB/s | 719.9 KiB | 00m00s [303/464] Installing libxslt-0:1.1.43-7 100% | 16.3 MiB/s | 466.2 KiB | 00m00s [304/464] Installing hyphen-0:2.8.8-29. 100% | 53.1 MiB/s | 54.3 KiB | 00m00s [305/464] Installing vulkan-loader-0:1. 100% | 275.6 MiB/s | 564.4 KiB | 00m00s [306/464] Installing libunwind-0:1.8.3- 100% | 82.5 MiB/s | 168.9 KiB | 00m00s [307/464] Installing xkeyboard-config-0 100% | 215.6 MiB/s | 6.5 MiB | 00m00s [308/464] Installing libxkbcommon-0:1.1 100% | 215.2 MiB/s | 440.8 KiB | 00m00s [309/464] Installing libglvnd-core-deve 100% | 40.1 MiB/s | 41.1 KiB | 00m00s [310/464] Installing hicolor-icon-theme 100% | 19.5 MiB/s | 179.7 KiB | 00m00s [311/464] Installing sysprof-capture-de 100% | 239.8 MiB/s | 736.7 KiB | 00m00s [312/464] Installing libyaml-0:0.2.5-18 100% | 124.5 MiB/s | 127.4 KiB | 00m00s [313/464] Installing ruby-default-gems- 100% | 2.6 MiB/s | 72.9 KiB | 00m00s [314/464] Installing rubygem-psych-0:5. 100% | 49.3 MiB/s | 151.5 KiB | 00m00s [315/464] Installing rubygems-0:4.0.13- 100% | 45.9 MiB/s | 1.8 MiB | 00m00s [316/464] Installing kernel-headers-0:7 100% | 157.0 MiB/s | 7.1 MiB | 00m00s [317/464] Installing libxcrypt-devel-0: 100% | 16.3 MiB/s | 33.3 KiB | 00m00s [318/464] Installing glibc-devel-0:2.43 100% | 206.9 MiB/s | 3.7 MiB | 00m00s [319/464] Installing libdeflate-0:1.25- 100% | 105.4 MiB/s | 108.0 KiB | 00m00s [320/464] Installing openexr-libs-0:3.4 100% | 244.8 MiB/s | 3.2 MiB | 00m00s [321/464] Installing liblerc-0:4.1.0-1. 100% | 41.5 MiB/s | 255.1 KiB | 00m00s [322/464] Installing libtiff-0:4.7.1-2. 100% | 163.3 MiB/s | 668.9 KiB | 00m00s [323/464] Installing libpaper-1:2.1.1-1 100% | 45.0 MiB/s | 46.1 KiB | 00m00s [324/464] Installing libijs-0:0.35-26.f 100% | 0.0 B/s | 62.2 KiB | 00m00s [325/464] Installing jbig2dec-libs-0:0. 100% | 170.1 MiB/s | 174.2 KiB | 00m00s [326/464] Installing adobe-mappings-pdf 100% | 219.8 MiB/s | 4.4 MiB | 00m00s [327/464] Installing libX11-common-0:1. 100% | 148.2 MiB/s | 1.2 MiB | 00m00s [328/464] Installing libX11-0:1.8.13-1. 100% | 175.2 MiB/s | 1.4 MiB | 00m00s [329/464] Installing libX11-devel-0:1.8 100% | 69.1 MiB/s | 1.1 MiB | 00m00s [330/464] Installing libXext-0:1.3.6-5. 100% | 92.5 MiB/s | 94.7 KiB | 00m00s [331/464] Installing libXext-devel-0:1. 100% | 53.6 MiB/s | 109.8 KiB | 00m00s [332/464] Installing libXrender-0:0.9.1 100% | 0.0 B/s | 46.9 KiB | 00m00s [333/464] Installing cairo-0:1.18.4-6.f 100% | 198.1 MiB/s | 1.8 MiB | 00m00s [334/464] Installing libXrender-devel-0 100% | 0.0 B/s | 51.0 KiB | 00m00s [335/464] Installing cairo-gobject-0:1. 100% | 0.0 B/s | 35.6 KiB | 00m00s [336/464] Installing libXi-0:1.8.3-1.fc 100% | 79.3 MiB/s | 81.2 KiB | 00m00s [337/464] Installing libXfixes-0:6.0.1- 100% | 0.0 B/s | 31.2 KiB | 00m00s [338/464] Installing libXfixes-devel-0: 100% | 0.0 B/s | 9.9 KiB | 00m00s [339/464] Installing libXi-devel-0:1.8. 100% | 70.4 MiB/s | 144.3 KiB | 00m00s [340/464] Installing libXtst-0:1.2.5-4. 100% | 0.0 B/s | 34.2 KiB | 00m00s [341/464] Installing libXcursor-0:1.2.3 100% | 53.5 MiB/s | 54.8 KiB | 00m00s [342/464] Installing libXdamage-0:1.1.6 100% | 39.9 MiB/s | 40.8 KiB | 00m00s [343/464] Installing libXft-0:2.3.8-10. 100% | 165.6 MiB/s | 169.5 KiB | 00m00s [344/464] Installing pango-0:1.57.1-1.f 100% | 32.7 MiB/s | 1.0 MiB | 00m00s [345/464] Installing glycin-loaders-0:2 100% | 315.0 MiB/s | 16.4 MiB | 00m00s [346/464] Installing glycin-libs-0:2.1. 100% | 264.3 MiB/s | 4.8 MiB | 00m00s [347/464] Installing gdk-pixbuf2-0:2.44 100% | 69.8 MiB/s | 2.6 MiB | 00m00s [348/464] Installing librsvg2-0:2.62.3- 100% | 244.1 MiB/s | 6.1 MiB | 00m00s [349/464] Installing libXrandr-0:1.5.4- 100% | 51.3 MiB/s | 52.5 KiB | 00m00s [350/464] Installing libXinerama-0:1.1. 100% | 0.0 B/s | 15.7 KiB | 00m00s [351/464] Installing libXt-0:1.3.1-4.fc 100% | 229.7 MiB/s | 470.4 KiB | 00m00s [352/464] Installing libXcomposite-0:0. 100% | 0.0 B/s | 41.7 KiB | 00m00s [353/464] Installing mesa-libEGL-0:26.1 100% | 185.1 MiB/s | 379.1 KiB | 00m00s [354/464] Installing libglvnd-egl-1:1.7 100% | 72.3 MiB/s | 74.0 KiB | 00m00s [355/464] Installing libglvnd-gles-1:1. 100% | 112.0 MiB/s | 114.7 KiB | 00m00s [356/464] Installing libXcomposite-deve 100% | 9.8 MiB/s | 10.1 KiB | 00m00s [357/464] Installing libgs-0:10.07.1-1. 100% | 355.0 MiB/s | 25.2 MiB | 00m00s [358/464] Installing libXinerama-devel- 100% | 0.0 B/s | 8.4 KiB | 00m00s [359/464] Installing libXrandr-devel-0: 100% | 0.0 B/s | 24.1 KiB | 00m00s [360/464] Installing gtk-update-icon-ca 100% | 2.4 MiB/s | 62.9 KiB | 00m00s [361/464] Installing libXdamage-devel-0 100% | 0.0 B/s | 3.1 KiB | 00m00s [362/464] Installing libXcursor-devel-0 100% | 29.8 MiB/s | 30.5 KiB | 00m00s [363/464] Installing libXtst-devel-0:1. 100% | 0.0 B/s | 13.6 KiB | 00m00s [364/464] Installing harfbuzz-cairo-0:1 100% | 0.0 B/s | 44.6 KiB | 00m00s [365/464] Installing libXxf86vm-0:1.1.6 100% | 0.0 B/s | 26.1 KiB | 00m00s [366/464] Installing mesa-libGL-0:26.1. 100% | 177.2 MiB/s | 362.9 KiB | 00m00s [367/464] Installing libglvnd-glx-1:1.7 100% | 249.5 MiB/s | 766.4 KiB | 00m00s [368/464] Installing libglvnd-devel-1:1 100% | 424.1 MiB/s | 2.1 MiB | 00m00s [369/464] Installing mesa-libGLU-devel- 100% | 0.0 B/s | 17.5 KiB | 00m00s [370/464] Installing libepoxy-devel-0:1 100% | 397.4 MiB/s | 1.6 MiB | 00m00s [371/464] Installing libva-0:2.23.0-3.f 100% | 164.2 MiB/s | 336.3 KiB | 00m00s [372/464] Installing libGLEW-0:2.2.0-12 100% | 247.8 MiB/s | 761.2 KiB | 00m00s [373/464] Installing libXv-0:1.0.13-4.f 100% | 0.0 B/s | 26.8 KiB | 00m00s [374/464] Installing xprop-0:1.2.8-5.fc 100% | 2.2 MiB/s | 59.6 KiB | 00m00s [375/464] Installing wxGTK-i18n-0:3.2.9 100% | 257.3 MiB/s | 5.7 MiB | 00m00s [376/464] Installing libmspack-0:0.10.1 100% | 25.6 MiB/s | 157.2 KiB | 00m00s [377/464] Installing tzdata-0:2026b-1.f 100% | 44.5 MiB/s | 1.5 MiB | 00m00s [378/464] Installing python-pip-wheel-0 100% | 622.7 MiB/s | 1.2 MiB | 00m00s [379/464] Installing mpdecimal-0:4.0.1- 100% | 29.6 MiB/s | 242.4 KiB | 00m00s [380/464] Installing python3-libs-0:3.1 100% | 259.1 MiB/s | 48.2 MiB | 00m00s [381/464] Installing python3-0:3.15.0~b 100% | 1.0 MiB/s | 26.3 KiB | 00m00s [382/464] Installing gstreamer1-0:1.28. 100% | 113.0 MiB/s | 5.7 MiB | 00m00s [383/464] Installing at-spi2-core-0:2.6 100% | 161.9 MiB/s | 1.6 MiB | 00m00s [384/464] Installing atk-0:2.60.4-2.fc4 100% | 267.5 MiB/s | 273.9 KiB | 00m00s [385/464] Installing at-spi2-atk-0:2.60 100% | 145.1 MiB/s | 297.2 KiB | 00m00s [386/464] Installing gtk3-0:3.24.52-3.f 100% | 207.3 MiB/s | 23.2 MiB | 00m00s [387/464] Installing gstreamer1-plugins 100% | 219.0 MiB/s | 7.7 MiB | 00m00s [388/464] Installing boost-python3-0:1. 100% | 133.2 MiB/s | 272.8 KiB | 00m00s [389/464] Installing python3-numpy-f2py 100% | 50.9 MiB/s | 2.2 MiB | 00m00s [390/464] Installing python3-numpy-1:2. 100% | 237.7 MiB/s | 38.7 MiB | 00m00s [391/464] Installing python3-packaging- 100% | 168.6 MiB/s | 1.0 MiB | 00m00s [392/464] Installing glib2-devel-0:2.89 100% | 226.8 MiB/s | 15.9 MiB | 00m00s [393/464] Installing atk-devel-0:2.60.4 100% | 253.2 MiB/s | 6.1 MiB | 00m00s [394/464] Installing libcloudproviders- 100% | 198.3 MiB/s | 1.4 MiB | 00m00s [395/464] Installing at-spi2-core-devel 100% | 240.9 MiB/s | 4.6 MiB | 00m00s [396/464] Installing at-spi2-atk-devel- 100% | 0.0 B/s | 2.1 KiB | 00m00s [397/464] Installing python3-rpm-genera 100% | 0.0 B/s | 82.9 KiB | 00m00s [398/464] Installing boost-numpy3-0:1.9 100% | 56.6 MiB/s | 58.0 KiB | 00m00s [399/464] Installing gstreamer1-plugins 100% | 204.5 MiB/s | 3.7 MiB | 00m00s [400/464] Installing webkit2gtk4.1-0:2. 100% | 329.4 MiB/s | 110.4 MiB | 00m00s [401/464] Installing libdecor-0:0.2.5-2 100% | 85.2 MiB/s | 174.6 KiB | 00m00s [402/464] Installing SDL3-0:3.4.10-1.fc 100% | 262.6 MiB/s | 3.4 MiB | 00m00s [403/464] Installing sdl2-compat-0:2.32 100% | 227.5 MiB/s | 466.0 KiB | 00m00s [404/464] Installing wxGTK-0:3.2.9-2.fc 100% | 270.2 MiB/s | 17.0 MiB | 00m00s [405/464] Installing wxGTK-gl-0:3.2.9-2 100% | 108.2 MiB/s | 110.8 KiB | 00m00s [406/464] Installing wxGTK-media-0:3.2. 100% | 84.9 MiB/s | 86.9 KiB | 00m00s [407/464] Installing wxGTK-webview-0:3. 100% | 187.9 MiB/s | 192.4 KiB | 00m00s [408/464] Installing python3-pyparsing- 100% | 259.6 MiB/s | 1.0 MiB | 00m00s [409/464] Installing systemtap-sdt-dtra 100% | 6.6 MiB/s | 182.4 KiB | 00m00s [410/464] Installing gettext-0:1.0-1.fc 100% | 244.7 MiB/s | 17.9 MiB | 00m00s [411/464] Installing ninja-build-0:1.13 100% | 17.1 MiB/s | 491.5 KiB | 00m00s [412/464] Installing cmake-rpm-macros-0 100% | 0.0 B/s | 9.0 KiB | 00m00s [413/464] Installing libubsan-0:16.1.1- 100% | 244.4 MiB/s | 500.6 KiB | 00m00s [414/464] Installing libatomic-0:16.1.1 100% | 0.0 B/s | 38.3 KiB | 00m00s [415/464] Installing libasan-0:16.1.1-2 100% | 267.8 MiB/s | 1.9 MiB | 00m00s [416/464] Installing gcc-0:16.1.1-2.fc4 100% | 267.0 MiB/s | 88.6 MiB | 00m00s [417/464] Installing boost-url-0:1.90.0 100% | 171.5 MiB/s | 351.2 KiB | 00m00s [418/464] Installing boost-test-0:1.90. 100% | 215.4 MiB/s | 661.8 KiB | 00m00s [419/464] Installing boost-stacktrace-0 100% | 74.8 MiB/s | 76.6 KiB | 00m00s [420/464] Installing boost-nowide-0:1.9 100% | 0.0 B/s | 21.4 KiB | 00m00s [421/464] Installing boost-0:1.90.0-10. 100% | 0.0 B/s | 1.7 KiB | 00m00s [422/464] Installing libzip-0:1.11.4-3. 100% | 141.2 MiB/s | 144.5 KiB | 00m00s [423/464] Installing libwmf-lite-0:0.2. 100% | 157.2 MiB/s | 160.9 KiB | 00m00s [424/464] Installing fftw-libs-double-0 100% | 208.6 MiB/s | 1.7 MiB | 00m00s [425/464] Installing ImageMagick-libs-1 100% | 201.5 MiB/s | 8.7 MiB | 00m00s [426/464] Installing systemtap-sdt-deve 100% | 181.6 MiB/s | 185.9 KiB | 00m00s [427/464] Installing xz-devel-1:5.8.3-1 100% | 128.2 MiB/s | 262.6 KiB | 00m00s [428/464] Installing libxml2-devel-0:2. 100% | 90.8 MiB/s | 3.2 MiB | 00m00s [429/464] Installing fontconfig-devel-0 100% | 31.1 MiB/s | 159.4 KiB | 00m00s [430/464] Installing cairo-devel-0:1.18 100% | 286.4 MiB/s | 2.3 MiB | 00m00s [431/464] Installing harfbuzz-devel-0:1 100% | 130.7 MiB/s | 6.4 MiB | 00m00s [432/464] Installing freetype-devel-0:2 100% | 162.2 MiB/s | 8.6 MiB | 00m00s [433/464] Installing cairo-gobject-deve 100% | 0.0 B/s | 7.6 KiB | 00m00s [434/464] Installing libXft-devel-0:2.3 100% | 40.6 MiB/s | 41.6 KiB | 00m00s [435/464] Installing pango-devel-0:1.57 100% | 380.9 MiB/s | 1.5 MiB | 00m00s [436/464] Installing glycin-devel-0:2.1 100% | 124.3 MiB/s | 127.3 KiB | 00m00s [437/464] Installing gdk-pixbuf2-devel- 100% | 66.4 MiB/s | 2.3 MiB | 00m00s [438/464] Installing libxkbcommon-devel 100% | 128.6 MiB/s | 395.1 KiB | 00m00s [439/464] Installing gtk3-devel-0:3.24. 100% | 266.8 MiB/s | 34.7 MiB | 00m00s [440/464] Installing inchi-libs-0:1.0.6 100% | 156.6 MiB/s | 1.4 MiB | 00m00s [441/464] Installing libstdc++-devel-0: 100% | 342.8 MiB/s | 40.8 MiB | 00m00s [442/464] Installing rhash-0:1.4.5-4.fc 100% | 13.0 MiB/s | 359.3 KiB | 00m00s [443/464] Installing libuv-1:1.52.1-1.f 100% | 192.4 MiB/s | 590.9 KiB | 00m00s [444/464] Installing jsoncpp-0:1.9.6-3. 100% | 129.4 MiB/s | 265.0 KiB | 00m00s [445/464] Installing cmake-0:4.3.0-3.fc 100% | 215.3 MiB/s | 37.2 MiB | 00m00s [446/464] Installing cmake-data-0:4.3.0 100% | 93.3 MiB/s | 10.1 MiB | 00m00s [447/464] Installing gcc-c++-0:16.1.1-2 100% | 226.1 MiB/s | 34.8 MiB | 00m00s [448/464] Installing inchi-devel-0:1.0. 100% | 95.5 MiB/s | 97.8 KiB | 00m00s [449/464] Installing wxGTK-devel-0:3.2. 100% | 75.1 MiB/s | 76.9 KiB | 00m00s [450/464] Installing perl-devel-4:5.42. 100% | 102.9 MiB/s | 3.8 MiB | 00m00s [451/464] Installing ImageMagick-1:7.1. 100% | 1.2 MiB/s | 88.8 KiB | 00m00s [452/464] Installing boost-devel-0:1.90 100% | 221.8 MiB/s | 145.5 MiB | 00m01s [453/464] Installing annobin-plugin-gcc 100% | 57.6 MiB/s | 707.9 KiB | 00m00s [454/464] Installing gcc-plugin-annobin 100% | 5.2 MiB/s | 58.3 KiB | 00m00s [455/464] Installing python3-devel-0:3. 100% | 60.9 MiB/s | 2.5 MiB | 00m00s [456/464] Installing python3-setuptools 100% | 196.0 MiB/s | 7.4 MiB | 00m00s [457/464] Installing ruby-devel-0:4.0.5 100% | 206.4 MiB/s | 1.7 MiB | 00m00s [458/464] Installing perl-generators-0: 100% | 22.6 MiB/s | 23.2 KiB | 00m00s [459/464] Installing desktop-file-utils 100% | 8.6 MiB/s | 245.2 KiB | 00m00s [460/464] Installing eigen3-devel-0:5.0 100% | 241.0 MiB/s | 9.6 MiB | 00m00s [461/464] Installing rapidjson-devel-0: 100% | 258.4 MiB/s | 793.7 KiB | 00m00s [462/464] Installing systemd-rpm-macros 100% | 4.4 MiB/s | 8.9 KiB | 00m00s [463/464] Installing swig-0:4.4.1-7.fc4 100% | 102.0 MiB/s | 6.2 MiB | 00m00s [464/464] Installing dos2unix-0:7.5.5-1 100% | 1.1 MiB/s | 840.4 KiB | 00m01s Complete! Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1781740800 Wrote: /builddir/build/SRPMS/openbabel-3.2.0-1.fc45.src.rpm Updating and loading repositories: fedora 100% | 1.5 KiB/s | 3.1 KiB | 00m02s Copr repository 100% | 1.0 KiB/s | 1.5 KiB | 00m02s Repositories loaded. Package "ImageMagick-1:7.1.2.13-4.fc45.s390x" is already installed. Package "boost-devel-1.90.0-10.fc45.s390x" is already installed. Package "cmake-4.3.0-3.fc45.s390x" is already installed. Package "desktop-file-utils-0.28-7.fc45.s390x" is already installed. Package "dos2unix-7.5.5-1.fc45.s390x" is already installed. Package "eigen3-devel-5.0.1-3.fc44.noarch" is already installed. Package "gcc-c++-16.1.1-2.fc45.s390x" is already installed. Package "inchi-devel-1.0.6-14.fc44.s390x" is already installed. Package "libxml2-devel-2.13.9-2.fc45.s390x" is already installed. Package "make-1:4.4.1-12.fc44.s390x" is already installed. Package "perl-devel-4:5.42.2-524.fc45.s390x" is already installed. Package "perl-generators-1.16-9.fc44.noarch" is already installed. Package "python3-devel-3.15.0~b2-3.fc45.s390x" is already installed. Package "python3-setuptools-82.0.1-3.fc45.noarch" is already installed. Package "rapidjson-devel-1.1.0^20241222git24b5e7a-4.fc44.s390x" is already installed. Package "ruby-devel-4.0.5-33.fc45.s390x" is already installed. Package "swig-4.4.1-7.fc45.s390x" is already installed. Package "wxGTK-devel-3.2.9-2.fc44.s390x" is already installed. Nothing to do. Finish: build setup for openbabel-3.2.0-1.fc45.src.rpm Start: rpmbuild openbabel-3.2.0-1.fc45.src.rpm Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1781740800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.xiZJWd Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.IIi8rR + umask 022 + cd /builddir/build/BUILD/openbabel-3.2.0-build + cd /builddir/build/BUILD/openbabel-3.2.0-build + rm -rf openbabel-openbabel-3-2-0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/openbabel-openbabel-3-2-0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd openbabel-openbabel-3-2-0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (openbabel-perl.patch): + echo 'Patch #0 (openbabel-perl.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .perl_path --fuzz=0 patching file scripts/CMakeLists.txt Patch #1 (openbabel-plugindir.patch): + echo 'Patch #1 (openbabel-plugindir.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .plugindir --fuzz=0 patching file CMakeLists.txt Patch #5 (openbabel-fix-libdir-in-pkgconfig.patch): + echo 'Patch #5 (openbabel-fix-libdir-in-pkgconfig.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file openbabel-3.pc.cmake + rm -rf src/formats/libinchi + dos2unix -k data/chemdrawcdx.h include/openbabel/tautomer.h include/openbabel/math/align.h src/math/align.cpp test/testsmartssym.py dos2unix: converting file data/chemdrawcdx.h to Unix format... dos2unix: converting file include/openbabel/tautomer.h to Unix format... dos2unix: converting file include/openbabel/math/align.h to Unix format... dos2unix: converting file src/math/align.cpp to Unix format... dos2unix: converting file test/testsmartssym.py to Unix format... + magick src/GUI/babel.xpm -transparent white babel.png + pushd doc ~/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/doc ~/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 + for man in *.1 ++ basename obabel.1 .1 + html=obabel.html + '[' -f obabel.html ']' + rm obabel.html + for man in *.1 ++ basename obchiral.1 .1 + html=obchiral.html + '[' -f obchiral.html ']' + rm obchiral.html + for man in *.1 ++ basename obconformer.1 .1 + html=obconformer.html + '[' -f obconformer.html ']' + rm obconformer.html + for man in *.1 ++ basename obdistgen.1 .1 + html=obdistgen.html + '[' -f obdistgen.html ']' + for man in *.1 ++ basename obenergy.1 .1 + html=obenergy.html + '[' -f obenergy.html ']' + rm obenergy.html + for man in *.1 ++ basename obfit.1 .1 + html=obfit.html + '[' -f obfit.html ']' + rm obfit.html + for man in *.1 ++ basename obgen.1 .1 + html=obgen.html + '[' -f obgen.html ']' + rm obgen.html + for man in *.1 ++ basename obgrep.1 .1 + html=obgrep.html + '[' -f obgrep.html ']' + rm obgrep.html + for man in *.1 ++ basename obgui.1 .1 + html=obgui.html + '[' -f obgui.html ']' + rm obgui.html + for man in *.1 ++ basename obminimize.1 .1 + html=obminimize.html + '[' -f obminimize.html ']' + rm obminimize.html + for man in *.1 ++ basename obprobe.1 .1 + html=obprobe.html + '[' -f obprobe.html ']' + rm obprobe.html + for man in *.1 ++ basename obprop.1 .1 + html=obprop.html + '[' -f obprop.html ']' + rm obprop.html + for man in *.1 ++ basename obrms.1 .1 + html=obrms.html + '[' -f obrms.html ']' + for man in *.1 ++ basename obrotamer.1 .1 + html=obrotamer.html + '[' -f obrotamer.html ']' + rm obrotamer.html + for man in *.1 ++ basename obrotate.1 .1 + html=obrotate.html + '[' -f obrotate.html ']' + rm obrotate.html + for man in *.1 ++ basename obspectrophore.1 .1 + html=obspectrophore.html + '[' -f obspectrophore.html ']' + rm obspectrophore.html + for man in *.1 ++ basename obsym.1 .1 + html=obsym.html + '[' -f obsym.html ']' + for man in *.1 ++ basename obtautomer.1 .1 + html=obtautomer.html + '[' -f obtautomer.html ']' + for man in *.1 ++ basename obthermo.1 .1 + html=obthermo.html + '[' -f obthermo.html ']' + for man in *.1 ++ basename roundtrip.1 .1 + html=roundtrip.html ~/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 + '[' -f roundtrip.html ']' + popd + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Dk0Tum + umask 022 + cd /builddir/build/BUILD/openbabel-3.2.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd openbabel-openbabel-3-2-0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCMAKE_SKIP_RPATH:BOOL=ON -DBUILD_GUI:BOOL=ON -DPYTHON_BINDINGS:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPERL_BINDINGS:BOOL=ON -DRUBY_BINDINGS:BOOL=ON -DWITH_MAEPARSER:BOOL=OFF -DWITH_COORDGEN:BOOL=OFF -DOB_PLUGIN_INSTALL_DIR:PATH=lib64/openbabel3 -DOPENBABEL_USE_SYSTEM_INCHI=true -DINCHI_INCLUDE_DIR:PATH=/usr/include/inchi -DINCHI_LIBRARY:FILEPATH=/usr/lib64/libinchi.so -DENABLE_VERSIONED_FORMATS=false -DRUN_SWIG:BOOL=ON -DENABLE_TESTS:BOOL=ON -DOPTIMIZE_NATIVE=OFF -DGLIBC_24_COMPATIBLE:BOOL=OFF -DEigen3_DIR:PATH=/usr/share/cmake/eigen3 -DRUBY_INSTDIR:PATH=/usr/lib64/ruby/vendor_ruby -- The C compiler identification is GNU 16.1.1 -- The CXX compiler identification is GNU 16.1.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.13.9") -- Found ZLIB: /usr/lib64/libz.so (found version "1.3.1") -- Found wxWidgets: -pthread;;;-lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.9") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for xdrstdio_create -- Looking for xdrstdio_create - not found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success Using built-in specs. COLLECT_GCC=/usr/bin/gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/s390x-redhat-linux/16/lto-wrapper Target: s390x-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,objc,obj-c++,ada,go,d,m2,algol68,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugzilla.redhat.com/ --enable-shared --enable-threads=posix --enable-checking=release --disable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --enable-libstdcxx-backtrace --with-libstdcxx-zoneinfo=/usr/share/zoneinfo --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl=/builddir/build/BUILD/gcc-16.1.1-build/gcc-16.1.1-20260515/obj-s390x-redhat-linux/isl-install --enable-gnu-indirect-function --with-long-double-128 --with-arch=z13 --with-tune=z14 --enable-decimal-float --build=s390x-redhat-linux --with-build-config=bootstrap-lto --enable-link-serialization=1 --disable-libssp --disable-libquadmath Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 16.1.1 20260515 (Red Hat 16.1.1-2) (GCC) -- Found Boost: /usr/lib64/cmake/Boost-1.90.0/BoostConfig.cmake (found version "1.90.0") found components: program_options iostreams -- Found Boost: /usr/lib64/cmake/Boost-1.90.0/BoostConfig.cmake (found version "1.90.0") found components: filesystem iostreams unit_test_framework -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. -- Found PkgConfig: /usr/bin/pkg-config (found version "2.5.1") -- Found RapidJSON: /usr/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/include -- Checking for module 'cairo' -- Found cairo, version 1.18.4 -- Found Cairo: /usr/lib64/libcairo.so -- Cairo found. PNG output will be supported. -- Found Perl: /usr/bin/perl (found version "5.42.2") -- Found Boost: /usr/lib64/cmake/Boost-1.90.0/BoostConfig.cmake (found suitable version "1.90.0", minimum required is "1.45.0") found components: system -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost: /usr/lib64/cmake/Boost-1.90.0/BoostConfig.cmake (found version "1.90.0") found components: program_options iostreams -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built -- Found Python: /usr/bin/python3.15 (found version "3.15.0") found components: Interpreter -- Found SWIG: /usr/bin/swig (found version "4.4.1") -- Found SWIG: /usr/bin/swig (found suitable version "4.4.1", minimum required is "2.0") -- Found Python: /usr/bin/python3.15 (found version "3.15.0") found components: Interpreter Development Development.Module Development.Embed -- Python bindings will be compiled -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.42.2") -- Perl bindings will be compiled -- Found Ruby: /usr/bin/ruby (found version "4.0.5") found components: Interpreter Development -- Ruby bindings will be compiled -- Configuring done (4.3s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR PYTHON_EXECUTABLE SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose Change Dir: '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 2 [0/2] /usr/bin/cmake -P /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/CMakeFiles/VerifyGlobs.cmake [1/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/atomtyp.txt AtomTypeData AtomTypeData > atomtyp.h [2/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bondtyp.txt BondTypeData BondTypeData > bondtyp.h [3/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/phmodel.txt PhModelData PhModelData > phmodeldata.h [4/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/resdata.txt ResidueData ResidueData > resdata.h [5/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/ringtyp.txt RingTypeData RingTypeData > ringtyp.h [6/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/space-groups.txt SpaceGroupsData SpaceGroupsData > spacegroups.h [7/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/torlib.txt TorsionDefaults TorsionDefaults > torlib.h [8/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/types.txt TypesData TypesData > types.h [9/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/atomization-energies.txt AtomicHeatOfFormationData AtomicHeatOfFormationData > atomizationenergies.h [10/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/atom.cpp.o -MF src/CMakeFiles/openbabel.dir/atom.cpp.o.d -o src/CMakeFiles/openbabel.dir/atom.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/atom.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/atom.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/atom.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [11/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/alias.cpp.o -MF src/CMakeFiles/openbabel.dir/alias.cpp.o.d -o src/CMakeFiles/openbabel.dir/alias.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/alias.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/alias.h:20, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/alias.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/alias.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [12/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/base.cpp.o -MF src/CMakeFiles/openbabel.dir/base.cpp.o.d -o src/CMakeFiles/openbabel.dir/base.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/base.cpp [13/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bitvec.cpp.o -MF src/CMakeFiles/openbabel.dir/bitvec.cpp.o.d -o src/CMakeFiles/openbabel.dir/bitvec.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bitvec.cpp [14/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bond.cpp.o -MF src/CMakeFiles/openbabel.dir/bond.cpp.o.d -o src/CMakeFiles/openbabel.dir/bond.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp: In constructor ‘OpenBabel::OBBond::OBBond()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:63:18: warning: ‘OpenBabel::OBBond::Visit’ is deprecated: Use OBBitVec objects instead to be fully thread-safe. [-Wdeprecated-declarations] 63 | OBBond::OBBond() /*: d(new OBBondPrivate)*/ | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:98:12: note: declared here 98 | bool Visit; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:63:18: warning: ‘OpenBabel::OBBond::Visit’ is deprecated: Use OBBitVec objects instead to be fully thread-safe. [-Wdeprecated-declarations] 63 | OBBond::OBBond() /*: d(new OBBondPrivate)*/ | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:98:12: note: declared here 98 | bool Visit; | ^~~~~ [15/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -MF src/CMakeFiles/openbabel.dir/bondtyper.cpp.o.d -o src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bondtyper.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bondtyper.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bondtyper.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bondtyper.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [16/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/macrocycle.cpp.o -MF src/CMakeFiles/openbabel.dir/macrocycle.cpp.o.d -o src/CMakeFiles/openbabel.dir/macrocycle.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/macrocycle.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/macrocycle.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [17/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/builder.cpp.o -MF src/CMakeFiles/openbabel.dir/builder.cpp.o.d -o src/CMakeFiles/openbabel.dir/builder.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/builder.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/builder.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/builder.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [18/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/canon.cpp.o -MF src/CMakeFiles/openbabel.dir/canon.cpp.o.d -o src/CMakeFiles/openbabel.dir/canon.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/canon.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/canon.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [19/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/chains.cpp.o -MF src/CMakeFiles/openbabel.dir/chains.cpp.o.d -o src/CMakeFiles/openbabel.dir/chains.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chains.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chains.cpp:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [20/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/chargemodel.cpp.o -MF src/CMakeFiles/openbabel.dir/chargemodel.cpp.o.d -o src/CMakeFiles/openbabel.dir/chargemodel.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chargemodel.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chargemodel.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [21/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data_utilities.cpp.o -MF src/CMakeFiles/openbabel.dir/data_utilities.cpp.o.d -o src/CMakeFiles/openbabel.dir/data_utilities.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data_utilities.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data_utilities.cpp:30: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [22/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/descriptor.cpp.o -MF src/CMakeFiles/openbabel.dir/descriptor.cpp.o.d -o src/CMakeFiles/openbabel.dir/descriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptor.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptor.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [23/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data.cpp.o -MF src/CMakeFiles/openbabel.dir/data.cpp.o.d -o src/CMakeFiles/openbabel.dir/data.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [24/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/elements.cpp.o -MF src/CMakeFiles/openbabel.dir/elements.cpp.o.d -o src/CMakeFiles/openbabel.dir/elements.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/elements.cpp [25/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -MF src/CMakeFiles/openbabel.dir/fingerprint.cpp.o.d -o src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprint.cpp [26/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/format.cpp.o -MF src/CMakeFiles/openbabel.dir/format.cpp.o.d -o src/CMakeFiles/openbabel.dir/format.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/format.cpp [27/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/generic.cpp.o -MF src/CMakeFiles/openbabel.dir/generic.cpp.o.d -o src/CMakeFiles/openbabel.dir/generic.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/generic.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/generic.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/generic.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [28/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/graphsym.cpp.o -MF src/CMakeFiles/openbabel.dir/graphsym.cpp.o.d -o src/CMakeFiles/openbabel.dir/graphsym.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/graphsym.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/graphsym.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/graphsym.cpp:30: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [29/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/forcefield.cpp.o -MF src/CMakeFiles/openbabel.dir/forcefield.cpp.o.d -o src/CMakeFiles/openbabel.dir/forcefield.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:55:18: warning: ‘virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)’ was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:123:10: note: by ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’ 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In constructor ‘OpenBabel::OBFloatGrid::OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In destructor ‘virtual OpenBabel::OBFloatGrid::~OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:435:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 435 | if (_ignoreAtom == a) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:437:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 437 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:447:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 447 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:457:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 457 | if (_ignoreAtom == d) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘double OpenBabel::OBFFConstraints::GetConstraintEnergy()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:526:53: warning: ‘static double OpenBabel::OBForceField::VectorLengthDerivative(OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 526 | rab = OBForceField::VectorLengthDerivative(da, db); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1569:19: note: declared here 1569 | static double VectorLengthDerivative(vector3 &a, vector3 &b); | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:543:54: warning: ‘static double OpenBabel::OBForceField::VectorAngleDerivative(OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 543 | theta = OBForceField::VectorAngleDerivative(da, db, dc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1585:19: note: declared here 1585 | static double VectorAngleDerivative(vector3 &a, vector3 &b, vector3 &c); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:562:56: warning: ‘static double OpenBabel::OBForceField::VectorTorsionDerivative(OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 562 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1618:19: note: declared here 1618 | static double VectorTorsionDerivative(vector3 &a, vector3 &b, vector3 &c, vector3 &d); | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintType(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:709:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 709 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘double OpenBabel::OBFFConstraints::GetConstraintValue(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:717:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 717 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomA(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:725:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 725 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomB(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:733:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 733 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomC(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:741:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 741 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomD(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:749:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 749 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBForceField::SystematicRotorSearchInitialize(unsigned int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1224:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1224 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotamer.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:32: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBForceField::FastRotorSearch(bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1345:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1345 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1393:34: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1393 | num_permutations = factorial[num_rotors_to_permute]; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1397:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1397 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1410 | for (int i=0; i >&, std::vector, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1619:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 1619 | if (j == rotorKey[i]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1638:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 1638 | if (j == rotorKey[i]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1678:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1678 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:668:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:664:20: note: ‘constraint’ declared here 664 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:668:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:664:20: note: ‘constraint’ declared here 664 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:679:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:673:20: note: ‘constraint’ declared here 673 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:679:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:673:20: note: ‘constraint’ declared here 673 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:691:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:684:20: note: ‘constraint’ declared here 684 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:691:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:684:20: note: ‘constraint’ declared here 684 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:704:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:696:20: note: ‘constraint’ declared here 696 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:704:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:696:20: note: ‘constraint’ declared here 696 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddIgnore(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:624:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM [(double *)&constraint + 16B]’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddIgnore(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:621:20: note: ‘constraint’ declared here 621 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:635:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:631:20: note: ‘constraint’ declared here 631 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:635:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:631:20: note: ‘constraint’ declared here 631 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:646:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:642:20: note: ‘constraint’ declared here 642 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:646:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:642:20: note: ‘constraint’ declared here 642 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:657:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:653:20: note: ‘constraint’ declared here 653 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:657:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:653:20: note: ‘constraint’ declared here 653 | OBFFConstraint constraint; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBForceField::FastRotorSearch(bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1433:29: warning: ‘minj’ may be used uninitialized [-Wmaybe-uninitialized] 1433 | rotorKey[idx + 1] = minj; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1359:21: note: ‘minj’ was declared here 1359 | unsigned int j, minj; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1450:11: warning: ‘minE’ may be used uninitialized [-Wmaybe-uninitialized] 1450 | if (minE < best_minE) { | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1360:22: note: ‘minE’ was declared here 1360 | double currentE, minE, best_minE; | ^~~~ [30/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/grid.cpp.o -MF src/CMakeFiles/openbabel.dir/grid.cpp.o.d -o src/CMakeFiles/openbabel.dir/grid.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:55:18: warning: ‘virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)’ was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:123:10: note: by ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’ 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In constructor ‘OpenBabel::OBFloatGrid::OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In destructor ‘virtual OpenBabel::OBFloatGrid::~OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp: In member function ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:82:5: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 82 | _ival=nullptr; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:82:5: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 82 | _ival=nullptr; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ [31/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/griddata.cpp.o -MF src/CMakeFiles/openbabel.dir/griddata.cpp.o.d -o src/CMakeFiles/openbabel.dir/griddata.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:31, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:55:18: warning: ‘virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)’ was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:123:10: note: by ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’ 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In constructor ‘OpenBabel::OBFloatGrid::OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In destructor ‘virtual OpenBabel::OBFloatGrid::~OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp: In member function ‘void OpenBabel::OBGridData::GetOriginVector(double*) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:194:24: warning: ‘void OpenBabel::OBFloatGrid::GetMin(double*)’ is deprecated: Use GetMin() instead [-Wdeprecated-declarations] 194 | d->floatGrid.GetMin(o); | ~~~~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:132:10: note: declared here 132 | void GetMin(double *a) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp: In member function ‘void OpenBabel::OBGridData::SetLimits(const double*, const double*, const double*, const double*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:235:27: warning: ‘void OpenBabel::OBFloatGrid::SetLimits(const double*, const double*, const double*, const double*)’ is deprecated: Use vector version instead [-Wdeprecated-declarations] 235 | d->floatGrid.SetLimits(origin, x, y, z); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:229:10: note: declared here 229 | void SetLimits(const double origin[3], const double x[3], const double y[3], | ^~~~~~~~~ [32/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/kekulize.cpp.o -MF src/CMakeFiles/openbabel.dir/kekulize.cpp.o.d -o src/CMakeFiles/openbabel.dir/kekulize.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp: In function ‘bool OpenBabel::NeedsDoubleBond(OBAtom*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp:100:15: warning: unused variable ‘nbr’ [-Wunused-variable] 100 | OBAtom *nbr = bond->GetNbrAtom(atom); | ^~~ [33/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/locale.cpp.o -MF src/CMakeFiles/openbabel.dir/locale.cpp.o.d -o src/CMakeFiles/openbabel.dir/locale.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/locale.cpp [34/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/isomorphism.cpp.o -MF src/CMakeFiles/openbabel.dir/isomorphism.cpp.o.d -o src/CMakeFiles/openbabel.dir/isomorphism.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/isomorphism.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/isomorphism.cpp:3: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [35/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/matrix.cpp.o -MF src/CMakeFiles/openbabel.dir/matrix.cpp.o.d -o src/CMakeFiles/openbabel.dir/matrix.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/matrix.cpp [36/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/molchrg.cpp.o -MF src/CMakeFiles/openbabel.dir/molchrg.cpp.o.d -o src/CMakeFiles/openbabel.dir/molchrg.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/molchrg.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/molchrg.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [37/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mol.cpp.o -MF src/CMakeFiles/openbabel.dir/mol.cpp.o.d -o src/CMakeFiles/openbabel.dir/mol.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp: In member function ‘unsigned int OpenBabel::OBMol::NumHvyAtoms() const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:811:36: warning: unnecessary parentheses in declaration of ‘i’ [-Wparentheses] 811 | vector::const_iterator(i); | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:811:36: note: remove parentheses 811 | vector::const_iterator(i); | ^~~ | - - /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp: In member function ‘unsigned int OpenBabel::OBMol::GetTotalSpinMultiplicity()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:1229:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1229 | if (chg % 2 != unpaired_electrons %2) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp: In member function ‘bool OpenBabel::OBMol::ConvertZeroBonds()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:3935:31: warning: unused variable ‘b’ [-Wunused-variable] 3935 | FOR_BONDS_OF_ATOM(b, bgn) { bcount += 1; } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:420:45: note: in definition of macro ‘FOR_BONDS_OF_ATOM’ 420 | #define FOR_BONDS_OF_ATOM(b,p) for (auto b : impl::AtomGetBonds(p)) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:3937:31: warning: unused variable ‘b’ [-Wunused-variable] 3937 | FOR_BONDS_OF_ATOM(b, end) { ecount += 1; } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:420:45: note: in definition of macro ‘FOR_BONDS_OF_ATOM’ 420 | #define FOR_BONDS_OF_ATOM(b,p) for (auto b : impl::AtomGetBonds(p)) | ^ [38/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obconversion.cpp.o -MF src/CMakeFiles/openbabel.dir/obconversion.cpp.o.d -o src/CMakeFiles/openbabel.dir/obconversion.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obconversion.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstream.h:333, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obconversion.cpp:54: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstreamimpl.h: In instantiation of ‘bool zlib_stream::basic_zip_streambuf::zip_to_stream(char_type*, std::streamsize) [with charT = char; traits = std::char_traits; char_type = char; std::streamsize = long int]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstreamimpl.h:126:9: required from ‘zlib_stream::basic_zip_streambuf::int_type zlib_stream::basic_zip_streambuf::overflow(int_type) [with charT = char; traits = std::char_traits; int_type = int]’ 126 | if (zip_to_stream(this->pbase(), w)) | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstreamimpl.h:118:1: required from here 118 | basic_zip_streambuf::overflow(int_type c) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstreamimpl.h:242:44: warning: variable ‘total_written_byte_size’ set but not used [-Wunused-but-set-variable=] 242 | std::streamsize written_byte_size = 0, total_written_byte_size = 0; | ^~~~~~~~~~~~~~~~~~~~~~~ [39/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -MF src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o.d -o src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:425:5: warning: multi-line comment [-Wcomment] 425 | // / \ | ^ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘bool OpenBabel::TSimpleMolecule::threeBondResolve(int, int, double&, double&, OpenBabel::neighbourlist*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:970:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 970 | for (i=0; i&, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:1473:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1473 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1480 | } while (k&, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2022:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2022 | for (j=0; j0) atDef=atDef+1; | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2032:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2032 | if (cN>=0) if (maxAtDef==atomCycle[cN].size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2047:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2047 | for (j=1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2053 | for (j=0;currNumDef < atomClean && j&, std::vector, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2120:98: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2120 | if (baseCycle>0) for (i=0; i, std::vector, int, int&, int, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2251:67: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2251 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2253 | for (k=0; k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2277 | for (j=1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2588 | if ((nb + i) > dsATN.size()) nb=dsATN.size()-i; // Check added to avoid segfault below, see issue #1851 | ~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TSimpleMolecule::flipSmall(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2998:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2998 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3037 | for (i=0; i, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3116 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3116:75: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3116 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3118:26: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3118 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3118:75: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3118 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘bool OpenBabel::compareAtoms(int, int, std::vector*>)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3140:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3140 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3140:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3140 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TSimpleMolecule::makeEquivalentList(std::vector&, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3306:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3306 | for (j=0; jsize(); j++) (*lL)[i]=0; | ~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3314:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3314 | for (i=0; i*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3324 | for (int i=0; i&, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3340:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const __gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘const int’} [-Wsign-compare] 3340 | if (l <= maxValues[i]) { /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘int OpenBabel::TSimpleMolecule::correctOverlapped()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3389:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3389 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3442 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3452 | for (i=0; i*, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3555:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 3555 | for (i=0; isize(); i++) if (i != index) { | ~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4231:19: warning: variable ‘nBondsOld’ set but not used [-Wunused-but-set-variable=] 4231 | int nAtomsOld,nBondsOld,naDef1,naDef,i; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4232:10: warning: variable ‘test’ set but not used [-Wunused-but-set-variable=] 4232 | bool test,test1,test2; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4232:15: warning: variable ‘test1’ set but not used [-Wunused-but-set-variable=] 4232 | bool test,test1,test2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4232:21: warning: variable ‘test2’ set but not used [-Wunused-but-set-variable=] 4232 | bool test,test1,test2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4234:40: warning: variable ‘xCenter’ set but not used [-Wunused-but-set-variable=] 4234 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4234:48: warning: variable ‘yCenter’ set but not used [-Wunused-but-set-variable=] 4234 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘OpenBabel::TEditedMolecule* OpenBabel::TEditedMolecule::extractFragment(int, std::vector*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4425:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4425 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4425:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4425 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4430:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4430 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4433 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4606 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4611 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4616 | for (i=0; i*, std::vector*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4651:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 4651 | if (qEnumerator->size() != nAtoms()) qEnumerator->resize(nAtoms()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4652:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4652 | for (i=0; isize(); i++) (*qEnumerator)[i]=i; | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4681:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4681 | for (j=0; jsize(); j++) { | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘bool OpenBabel::TEditedMolecule::fragmentSearch(OpenBabel::TEditedMolecule*, std::vector*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4868:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4868 | if (molecule1->listarSize()>aSTested.size()) aSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4869:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4869 | if (molecule1->listarSize()>bSTested.size()) bSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4870:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4870 | if (molecule1->listarSize()>queryQHydr.size()) queryQHydr.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4871:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4871 | if (molecule1->listarSize()>queryAQTested.size()) queryAQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4872:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4872 | if (molecule1->listarSize()>queryBQTested.size()) queryBQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4873:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4873 | if (molecule1->listarSize()>queryCurrentAssignment.size()) queryCurrentAssignment.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4874:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4874 | if (this->listarSize()>queryAQTested.size()) queryAQTested.resize(this->listarSize()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5047:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 5047 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4855:9: warning: variable ‘cycleNumber’ set but not used [-Wunused-but-set-variable=] 4855 | int cycleNumber; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘bool OpenBabel::TemplateRedraw::internalBondsPresent(OpenBabel::TEditedMolecule*, OpenBabel::TSimpleMolecule*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5210:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 5210 | for (i=0; inAtoms(); i++) aList[mQuery->queryAQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5211:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 5211 | for (i=0; inBonds(); i++) bList[mQuery->queryBQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TemplateRedraw::rotateBondVertically(OpenBabel::TSimpleMolecule*, std::vector, int, double, double, double&, double&, double&, double&, double&, double&, int&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5241:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5241 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5286 | for (i=0; i*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5320:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5320 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5337:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5337 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5367 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5377 | for (i=0; i*, OpenBabel::PartFragmentDefinition&, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5408:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5408 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5421:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5421 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5437:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5437 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘int OpenBabel::TemplateRedraw::coordinatesPrepare(OpenBabel::TEditedMolecule&, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5676:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5676 | for (i=kk; ifragmentSearch(&sm,nullptr)) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5724:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5724 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5727 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5735 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5807 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5837 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5903 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5915 | for (frCount=0; frCount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5931 | for (frCount=0; frCount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5954 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5969 | for (frCount=0; frCount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6009 | for (i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6016 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6035 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6043 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6044 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6045 | for (i=0; i::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 6367 | if (result == string::npos) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6368:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6368 | if (result >= instring.length()) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘std::string OpenBabel::getAtomMCDL(OBMol*, int, std::vector, std::vector, std::vector, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6555:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6555 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6600 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6602:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6602 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) n++; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6608:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6608 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) { | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6618:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6618 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-1; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6621:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6621 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-2; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6632:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6632 | if (k == 1) for (i=0; i >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6641 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6641 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6651 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘std::string OpenBabel::getBondMCDL(OBMol*, int, int, std::vector, std::vector, int (*)[4], std::vector, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6852:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6852 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6854:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6854 | for (j=i+1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6859 | for (j=i+1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6873 | for (j=i+1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6881 | for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6886 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6886 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6896 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6689:26: warning: variable ‘n4’ set but not used [-Wunused-but-set-variable=] 6689 | int i,j,n,m,n1,n2,n3,n4,an1,an2,an3,an4,k; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘void OpenBabel::implementAtomStereo(std::vector&, std::vector&, std::vector&, std::vector, std::vector, int, int, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6969:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6969 | if (n1 < (astereo.length()-1)) astereo=astereo.substr(n1+1); else astereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘void OpenBabel::implementBondStereo(std::vector, std::vector, std::vector&, std::vector&, int, int, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7033:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7033 | if (n1 < (bstereo.length()-1)) bstereo=bstereo.substr(n1+1); else bstereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘int OpenBabel::groupRedraw(OBMol*, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7168:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7168 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7176 | for (int i=0; i&, int&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7218 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7221:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7221 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7242:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7242 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7245:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7245 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ [40/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obfunctions.cpp.o -MF src/CMakeFiles/openbabel.dir/obfunctions.cpp.o.d -o src/CMakeFiles/openbabel.dir/obfunctions.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obfunctions.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obfunctions.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obfunctions.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [41/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/oberror.cpp.o -MF src/CMakeFiles/openbabel.dir/oberror.cpp.o.d -o src/CMakeFiles/openbabel.dir/oberror.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/oberror.cpp [42/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obutil.cpp.o -MF src/CMakeFiles/openbabel.dir/obutil.cpp.o.d -o src/CMakeFiles/openbabel.dir/obutil.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obutil.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obutil.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [43/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/op.cpp.o -MF src/CMakeFiles/openbabel.dir/op.cpp.o.d -o src/CMakeFiles/openbabel.dir/op.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/op.cpp [44/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obiter.cpp.o -MF src/CMakeFiles/openbabel.dir/obiter.cpp.o.d -o src/CMakeFiles/openbabel.dir/obiter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h: In constructor ‘OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:378:12: warning: ‘OpenBabel::OBMolRingIter::_parent’ will be initialized after [-Wreorder] 378 | OBMol *_parent; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:377:13: warning: ‘OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr’ [-Wreorder] 377 | OBRing *_ptr; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:1022:3: warning: when initialized here [-Wreorder] 1022 | OBMolRingIter::OBMolRingIter(OBMol *mol): _parent(mol), _ptr(nullptr) | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h: In constructor ‘OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:378:12: warning: ‘OpenBabel::OBMolRingIter::_parent’ will be initialized after [-Wreorder] 378 | OBMol *_parent; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:377:13: warning: ‘OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr’ [-Wreorder] 377 | OBRing *_ptr; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:1032:3: warning: when initialized here [-Wreorder] 1032 | OBMolRingIter::OBMolRingIter(OBMol &mol): _parent(&mol), _ptr(nullptr) | ^~~~~~~~~~~~~ [45/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/patty.cpp.o -MF src/CMakeFiles/openbabel.dir/patty.cpp.o.d -o src/CMakeFiles/openbabel.dir/patty.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/patty.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/patty.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/patty.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [46/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/parsmart.cpp.o -MF src/CMakeFiles/openbabel.dir/parsmart.cpp.o.d -o src/CMakeFiles/openbabel.dir/parsmart.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp: In member function ‘bool OpenBabel::OBSmartsPattern::Init(const char*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1775:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1775 | if (strlen(buffer) > MaxSmartsLength) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1778:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1778 | delete[] _buffer; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp: In destructor ‘virtual OpenBabel::OBSmartsPattern::~OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1807:37: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 1807 | OBSmartsPattern::~OBSmartsPattern() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1807:37: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 1807 | OBSmartsPattern::~OBSmartsPattern() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [47/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/phmodel.cpp.o -MF src/CMakeFiles/openbabel.dir/phmodel.cpp.o.d -o src/CMakeFiles/openbabel.dir/phmodel.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/phmodel.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/phmodel.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/phmodel.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [48/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/plugin.cpp.o -MF src/CMakeFiles/openbabel.dir/plugin.cpp.o.d -o src/CMakeFiles/openbabel.dir/plugin.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/plugin.cpp [49/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/query.cpp.o -MF src/CMakeFiles/openbabel.dir/query.cpp.o.d -o src/CMakeFiles/openbabel.dir/query.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/query.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/query.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/query.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [50/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rand.cpp.o -MF src/CMakeFiles/openbabel.dir/rand.cpp.o.d -o src/CMakeFiles/openbabel.dir/rand.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.cpp:429:15: warning: ‘void OpenBabel::GenerateSequence(unsigned int, unsigned int, unsigned int, unsigned int)’ defined but not used [-Wunused-function] 429 | static void GenerateSequence( unsigned int p, unsigned int m, | ^~~~~~~~~~~~~~~~ [51/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/pointgroup.cpp.o -MF src/CMakeFiles/openbabel.dir/pointgroup.cpp.o.d -o src/CMakeFiles/openbabel.dir/pointgroup.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘int OpenBabel::PointGroupPrivate::establish_pairs(SYMMETRY_ELEMENT*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:267:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 267 | if( elem->transform[i] >= _mol->NumAtoms() ){ /* No symmetric atom yet */ | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘int OpenBabel::PointGroupPrivate::check_transform_order(SYMMETRY_ELEMENT*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:311:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 311 | if( elem->transform[i] == i ) /* Identity transform is Ok for any order */ | ~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:315:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 315 | if( elem->transform[j] == i ) | ~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘int OpenBabel::PointGroupPrivate::same_transform(SYMMETRY_ELEMENT*, SYMMETRY_ELEMENT*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:358:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 358 | if( b->transform[j] != i ) | ~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘OpenBabel::OBPointGroup::Symbol OpenBabel::OBPointGroup::IdentifyPointGroupSymbol(double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:1958:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1958 | || d->NormalAxesCounts[2] >= maxAxis) { // Are there the perpendicular C2 axes? | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:1961:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1961 | if (d->PlanesCount >= maxAxis + 1) { // Likely Dnh | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:1986:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1986 | else if (d->PlanesCount == maxAxis) { // Likely Dnd | ~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2088:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2088 | else if (d->PlanesCount >= maxAxis) { // Cnv | ~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘void OpenBabel::OBPointGroup::Symmetrize(OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2175:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2175 | for (unsigned int i = 0; i < d->PlanesCount; i++) | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2182:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2182 | for (unsigned int i = 0; i < d->NormalAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2189:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2189 | for (unsigned int i = 0; i < d->ImproperAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~~~ [52/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o -MF src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o.d -o src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp: In member function ‘void OpenBabel::OBReactionFacadePrivate::FindComponents()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp:122:15: warning: unused variable ‘atm’ [-Wunused-variable] 122 | OBAtom* atm = &*atom; | ^~~ [53/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/residue.cpp.o -MF src/CMakeFiles/openbabel.dir/residue.cpp.o.d -o src/CMakeFiles/openbabel.dir/residue.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/residue.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/residue.cpp:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [54/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotamer.cpp.o -MF src/CMakeFiles/openbabel.dir/rotamer.cpp.o.d -o src/CMakeFiles/openbabel.dir/rotamer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp: In member function ‘void OpenBabel::OBRotamerList::AddRotamer(std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:410:11: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 410 | while (angle < 0.0) | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:412:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 412 | while (angle > 360.0) | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp: In member function ‘bool OpenBabel::OBRotamerList::SetCurrentCoordinates(OpenBabel::OBMol&, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:543:11: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 543 | while (angle < 0.0) | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:545:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 545 | while (angle > 360.0) | ^~~~~ [55/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/ring.cpp.o -MF src/CMakeFiles/openbabel.dir/ring.cpp.o.d -o src/CMakeFiles/openbabel.dir/ring.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp: In constructor ‘OpenBabel::OBRingSearch::OBRingSearch()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:484:62: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 484 | OBRingSearch::OBRingSearch() : _d(new OBRingSearchPrivate()) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:484:62: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 484 | OBRingSearch::OBRingSearch() : _d(new OBRingSearchPrivate()) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:484:62: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 484 | OBRingSearch::OBRingSearch() : _d(new OBRingSearchPrivate()) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp: In destructor ‘OpenBabel::OBRingSearch::~OBRingSearch()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:521:31: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 521 | OBRingSearch::~OBRingSearch() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:521:31: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 521 | OBRingSearch::~OBRingSearch() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ [56/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/spectrophore.cpp.o -MF src/CMakeFiles/openbabel.dir/spectrophore.cpp.o.d -o src/CMakeFiles/openbabel.dir/spectrophore.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/spectrophore.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/spectrophore.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [57/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotor.cpp.o -MF src/CMakeFiles/openbabel.dir/rotor.cpp.o.d -o src/CMakeFiles/openbabel.dir/rotor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp: In member function ‘bool OpenBabel::OBRotorList::SetEvalAtoms(OpenBabel::OBMol&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:335:28: warning: ‘void OpenBabel::OBRotor::SetEvalAtoms(OpenBabel::OBBitVec&)’ is deprecated [-Wdeprecated-declarations] 335 | rotor->SetEvalAtoms(eval); | ~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:435:10: note: declared here 435 | void SetEvalAtoms(OBBitVec &bv) { _evalatoms = bv; } | ^~~~~~~~~~~~ [58/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tokenst.cpp.o -MF src/CMakeFiles/openbabel.dir/tokenst.cpp.o.d -o src/CMakeFiles/openbabel.dir/tokenst.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tokenst.cpp [59/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tautomer.cpp.o -MF src/CMakeFiles/openbabel.dir/tautomer.cpp.o.d -o src/CMakeFiles/openbabel.dir/tautomer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp: In member function ‘bool OpenBabel::TautomerImpl::IsPropagationValid(OpenBabel::OBMol*, const std::vector&, const std::vector&, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp:407:13: warning: variable ‘numSingleBond’ set but not used [-Wunused-but-set-variable=] 407 | int numSingleBond = 0, numDoubleBond = 0, numUnassigned = 0; | ^~~~~~~~~~~~~ [60/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/transform.cpp.o -MF src/CMakeFiles/openbabel.dir/transform.cpp.o.d -o src/CMakeFiles/openbabel.dir/transform.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/transform.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/transform.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/transform.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [61/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/typer.cpp.o -MF src/CMakeFiles/openbabel.dir/typer.cpp.o.d -o src/CMakeFiles/openbabel.dir/typer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/typer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/typer.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/typer.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [62/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -MF src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o.d -o src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obmolecformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obmolecformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:277:28: warning: ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’ was hidden [-Woverloaded-virtual=] 277 | virtual const char *GetTitle(bool /*replaceNewlines*/ = true) const { return ""; } | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obmolecformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:99:15: note: by ‘std::string OpenBabel::OBReaction::GetTitle() const’ 99 | std::string GetTitle() const { return _title; } | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:278:21: warning: ‘virtual void OpenBabel::OBBase::SetTitle(const char*)’ was hidden [-Woverloaded-virtual=] 278 | virtual void SetTitle(const char *) {} | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:101:8: note: by ‘void OpenBabel::OBReaction::SetTitle(const std::string&)’ 101 | void SetTitle(const std::string& title) { _title=title; } | ^~~~~~~~ [63/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/confsearch.cpp.o -MF src/CMakeFiles/openbabel.dir/confsearch.cpp.o.d -o src/CMakeFiles/openbabel.dir/confsearch.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotamer.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp: In member function ‘bool OpenBabel::OBDiversePoses::AddPose(std::vector, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:189:14: warning: unused variable ‘min_rmsd’ [-Wunused-variable] 189 | double min_rmsd = DBL_MAX; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp: In member function ‘int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:361:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 361 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ [64/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -MF src/CMakeFiles/openbabel.dir/conformersearch.cpp.o.d -o src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/conformersearch.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotamer.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/conformersearch.h:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:250:12: warning: unused variable ‘score’ [-Wunused-variable] 250 | double score = ff->Energy(false); // no gradients | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘bool OpenBabel::OBConformerSearch::Setup(const OpenBabel::OBMol&, int, int, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:352:23: warning: variable ‘end_it’ set but not used [-Wunused-but-set-variable=] 352 | OBRotorIterator end_it = m_rotorList.EndRotors(); | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::local_opt()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:812:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 812 | for (i = 1; i <= m_rotorList.Size(); ++i, rotor = m_rotorList.NextRotor(ri)) | ~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::reproduce(OpenBabel::RotorKey&, OpenBabel::RotorKey&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:877:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 877 | if (iniche > -1) | ~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::share_fitness()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1042:37: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1042 | if ((dynamic_niches.size () < nb_niches) && (dynamic_niches.size () %2)) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1057:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1057 | if (dist < min_dist ) | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1070:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1070 | if (imax == -1) | ~~~~~^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1087:40: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1087 | if (dynamic_niches.size () < nb_niches) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1013:10: warning: unused variable ‘flag_niched’ [-Wunused-variable] 1013 | bool flag_niched = false; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘double OpenBabel::OBConformerSearch::sharing_generation()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1176 | while (ninsert < ((half_pop * 2) / 3)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1185:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1185 | if (iround < imax) | ~~~~~~~^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1193:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1193 | if (ninsert >= half_pop) | ~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1218:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1218 | while (ninsert < half_pop) | ~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1142:23: warning: unused variable ‘lowest’ [-Wunused-variable] 1142 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1142:37: warning: unused variable ‘highest’ [-Wunused-variable] 1142 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:25: In member function ‘OpenBabel::OBRandomMT::OBRandomMT()’, inlined from ‘OpenBabel::OBConformerSearch::NextGeneration()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:473:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:112:43: warning: ‘generator’ may be used uninitialized [-Wmaybe-uninitialized] 112 | OBRandomMT() : OBRandomMT{randomSeed()} {} | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h: In member function ‘OpenBabel::OBConformerSearch::NextGeneration()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:157:19: note: by argument 1 of type ‘const struct OBRandomMT *’ to ‘OpenBabel::OBRandomMT::randomSeed() const’ declared here 157 | uint_fast64_t randomSeed() const; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:473:16: note: ‘generator’ declared here 473 | OBRandomMT generator{}; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘OpenBabel::OBConformerSearch::MakeSelection()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:568:31: warning: ‘highest’ may be used uninitialized [-Wmaybe-uninitialized] 568 | double sum = 0.0, lowest, highest; | ^~~~~~~ [65/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -MF src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o.d -o src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/dlhandler_unix.cpp [66/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -MF src/CMakeFiles/openbabel.dir/depict/depict.cpp.o.d -o src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In function ‘unsigned int OpenBabel::GetAtomSymClass(OBAtom*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:284:11: warning: unused variable ‘nclasses’ [-Wunused-variable] 284 | int nclasses = end_pos - copy_sym.begin(); | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In member function ‘virtual void OpenBabel::OBDepictPrivate::DrawAtomLabel(const std::string&, int, const OpenBabel::vector3&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1028:21: warning: variable ‘metrics’ set but not used [-Wunused-but-set-variable=] 1028 | OBFontMetrics metrics = painter->GetFontMetrics(str); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1033:21: warning: variable ‘metrics’ set but not used [-Wunused-but-set-variable=] 1033 | OBFontMetrics metrics = painter->GetFontMetrics(subscript); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In member function ‘void OpenBabel::OBDepictPrivateBallAndStick::DrawAromaticRingBond(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, const OpenBabel::vector3&, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1242:99: warning: expression does not compute the number of elements in this array; element type is ‘const float’, not ‘double’ [-Wsizeof-array-div] 1242 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1242:100: note: add parentheses around ‘sizeof (double)’ to silence this warning 1242 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ^~~~~~~~~~~~~~ | ( ) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1241:24: note: array ‘dashpattern’ declared here 1241 | static const float dashpattern[] = {5., 5.}; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In member function ‘OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:461:22: warning: ‘min_x’ may be used uninitialized [-Wmaybe-uninitialized] 461 | width = max_x - min_x + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:434:14: note: ‘min_x’ was declared here 434 | double min_x, max_x; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:461:22: warning: ‘max_x’ may be used uninitialized [-Wmaybe-uninitialized] 461 | width = max_x - min_x + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:434:21: note: ‘max_x’ was declared here 434 | double min_x, max_x; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:462:22: warning: ‘min_y’ may be used uninitialized [-Wmaybe-uninitialized] 462 | height = max_y - min_y + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:435:14: note: ‘min_y’ was declared here 435 | double min_y, max_y; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:462:22: warning: ‘max_y’ may be used uninitialized [-Wmaybe-uninitialized] 462 | height = max_y - min_y + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:435:21: note: ‘max_y’ was declared here 435 | double min_y, max_y; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:464:25: warning: ‘min_z’ may be used uninitialized [-Wmaybe-uninitialized] 464 | d->zScale = max_z - min_z; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:436:14: note: ‘min_z’ was declared here 436 | double min_z, max_z; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:464:25: warning: ‘max_z’ may be used uninitialized [-Wmaybe-uninitialized] 464 | d->zScale = max_z - min_z; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:436:21: note: ‘max_z’ was declared here 436 | double min_z, max_z; | ^~~~~ [67/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -MF src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o.d -o src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h: In constructor ‘OpenBabel::SVGPainter::SVGPainter(std::ostream&, std::set >*, bool, double, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:77:11: warning: ‘OpenBabel::SVGPainter::m_fontPointSize’ will be initialized after [-Wreorder] 77 | int m_fontPointSize; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:75:12: warning: ‘bool OpenBabel::SVGPainter::m_isFillcolor’ [-Wreorder] 75 | bool m_isFillcolor; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:75:12: warning: ‘OpenBabel::SVGPainter::m_isFillcolor’ will be initialized after [-Wreorder] 75 | bool m_isFillcolor; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:74:32: warning: ‘std::set >* OpenBabel::SVGPainter::m_Gradients’ [-Wreorder] 74 | std::set *m_Gradients; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ [68/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -MF src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/matrix3x3.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/matrix3x3.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [69/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -MF src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/spacegroup.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/spacegroup.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [70/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o -MF src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/transform3d.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/transform3d.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [71/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/vector3.cpp.o -MF src/CMakeFiles/openbabel.dir/math/vector3.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/vector3.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/vector3.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/vector3.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [72/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/distgeom.cpp.o -MF src/CMakeFiles/openbabel.dir/distgeom.cpp.o.d -o src/CMakeFiles/openbabel.dir/distgeom.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:55: warning: ignoring ‘#pragma warning ’ [-Wunknown-pragmas] 55 | #pragma warning(disable : 4244) // warning C4244: '=' : conversion from 'double' to 'float', possible loss of data /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:56: warning: ignoring ‘#pragma warning ’ [-Wunknown-pragmas] 56 | #pragma warning(disable : 4305) // warning C4305: '*=' : truncation from 'double' to 'float' /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:642:3: warning: multi-line comment [-Wcomment] 642 | // \ | ^ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp: In member function ‘void OpenBabel::OBDistanceGeometry::SetAromaticRingBounds()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:458:14: warning: variable ‘angle’ set but not used [-Wunused-but-set-variable=] 458 | double angle = 180.0 - (360.0 / size); | ^~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:31: In member function ‘OpenBabel::OBRandomMT::OBRandomMT()’, inlined from ‘OpenBabel::OBDistanceGeometry::generateInitialCoords()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:1059:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:112:43: warning: ‘generator’ may be used uninitialized [-Wmaybe-uninitialized] 112 | OBRandomMT() : OBRandomMT{randomSeed()} {} | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h: In member function ‘OpenBabel::OBDistanceGeometry::generateInitialCoords()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:157:19: note: by argument 1 of type ‘const struct OBRandomMT *’ to ‘OpenBabel::OBRandomMT::randomSeed() const’ declared here 157 | uint_fast64_t randomSeed() const; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:1059:16: note: ‘generator’ declared here 1059 | OBRandomMT generator{}; | ^~~~~~~~~ [73/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/stereo.cpp [74/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/tetranonplanar.cpp [75/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/tetraplanar.cpp [76/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/align.cpp.o -MF src/CMakeFiles/openbabel.dir/math/align.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/align.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/align.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/align.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/align.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [77/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/squareplanar.cpp [78/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/cistrans.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/cistrans.cpp:3: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [79/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/tetrahedral.cpp [80/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/facade.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/facade.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [81/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/gen3dstereohelper.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/gen3dstereohelper.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [82/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/cansmidescriptor.cpp [83/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/cmpdfilter.cpp [84/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/groupcontrib.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/groupcontrib.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/groupcontrib.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [85/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/filters.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/filters.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [86/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/inchidescriptor.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/inchidescriptor.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h: In member function ‘bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ [87/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp: In function ‘bool OpenBabel::TetStereoToWedgeHash(OBMol&, std::map&, std::map&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:2795:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2795 | for (std::vector::iterator data = vdata.begin(); data != vdata.end(); ++data) | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:2951:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2951 | return true; | ^~~~~~ [88/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/smartsdescriptors.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/smartsdescriptors.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [89/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger2.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger2.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [90/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp: In member function ‘virtual bool OpenBabel::PatternFP::GetFingerprint(OpenBabel::OBBase*, std::vector&, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp:109:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 109 | while(n < _bitcount) | ~~^~~~~~~~~~~ [91/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/fingerecfp.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/fingerecfp.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [92/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:29: In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:573:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:573:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:588:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:588:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:638:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:638:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:638:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:654:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:654:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:654:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:708:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:708:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:708:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&torsioncalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:708:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16: warning: ‘MEM[(const struct OBFFCalculation4 &)&torsioncalc].force_d’ may be used uninitialized [-Wmaybe-uninitialized] 199 | class OBFPRT OBFFCalculation4: public OBFFCalculation3 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:725:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:725:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:725:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&torsioncalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:725:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16: warning: ‘MEM[(const struct OBFFCalculation4 &)&torsioncalc].force_d’ may be used uninitialized [-Wmaybe-uninitialized] 199 | class OBFPRT OBFFCalculation4: public OBFFCalculation3 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFOOPCalculationGaff::OBFFOOPCalculationGaff(OpenBabel::OBFFOOPCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:55:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFOOPCalculationGaff*, OpenBabel::OBFFOOPCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFOOPCalculationGaff*, OpenBabel::OBFFOOPCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFOOPCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:786:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&oopcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:734:28: note: ‘oopcalc’ declared here 734 | OBFFOOPCalculationGaff oopcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: warning: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 104B]’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: warning: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 105B]’ may be used uninitialized [-Wmaybe-uninitialized] In member function ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9: warning: ‘MEM[(const struct OBFFVDWCalculationGaff &)&vdwcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 63 | class OBFFVDWCalculationGaff : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM[(const struct OBFFVDWCalculationGaff &)&vdwcalc].rab’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1013:38: warning: ‘MEM[(const struct OBFFElectrostaticCalculationGaff &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 1013 | OBFFElectrostaticCalculationGaff elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGaff::OBFFElectrostaticCalculationGaff(OpenBabel::OBFFElectrostaticCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:72:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGaff*, OpenBabel::OBFFElectrostaticCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGaff*, OpenBabel::OBFFElectrostaticCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1055:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1013:38: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 1013 | OBFFElectrostaticCalculationGaff elecalc; | ^~~~~~~ [93/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:478:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:478:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:493:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:493:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:546:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:546:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:546:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:562:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:562:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:562:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:632:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:632:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:632:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&torsioncalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:632:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16: warning: ‘MEM[(const struct OBFFCalculation4 &)&torsioncalc].force_d’ may be used uninitialized [-Wmaybe-uninitialized] 199 | class OBFPRT OBFFCalculation4: public OBFFCalculation3 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:683:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:683:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:683:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&torsioncalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:683:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16: warning: ‘MEM[(const struct OBFFCalculation4 &)&torsioncalc].force_d’ may be used uninitialized [-Wmaybe-uninitialized] 199 | class OBFPRT OBFFCalculation4: public OBFFCalculation3 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: warning: ‘MEM[(const struct OBFFVDWCalculationGhemical &)&vdwcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ was declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: warning: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 104B]’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: warning: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 105B]’ may be used uninitialized [-Wmaybe-uninitialized] In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: warning: ‘MEM[(const struct OBFFElectrostaticCalculationGhemical &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘elecalc’ declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘elecalc’ declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘elecalc’ declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘elecalc’ declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ [94/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2798:32: warning: variable ‘bondtype1’ set but not used [-Wunused-but-set-variable=] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2798:43: warning: variable ‘bondtype2’ set but not used [-Wunused-but-set-variable=] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:289:40: required from here 289 | return gradients ? E_Bond() : E_Bond(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | for (int i = 0; i < _bondcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:289:58: required from here 289 | return gradients ? E_Bond() : E_Bond(); | ~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | for (int i = 0; i < _bondcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:295:41: required from here 295 | return gradients ? E_Angle() : E_Angle(); | ~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 263 | for (int i = 0; i < _anglecalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:295:60: required from here 295 | return gradients ? E_Angle() : E_Angle(); | ~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 263 | for (int i = 0; i < _anglecalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:301:42: required from here 301 | return gradients ? E_StrBnd() : E_StrBnd(); | ~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 376 | for (int i = 0; i < _strbndcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:301:62: required from here 301 | return gradients ? E_StrBnd() : E_StrBnd(); | ~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 376 | for (int i = 0; i < _strbndcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:307:43: required from here 307 | return gradients ? E_Torsion() : E_Torsion(); | ~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 512 | for (int i = 0; i < _torsioncalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:307:64: required from here 307 | return gradients ? E_Torsion() : E_Torsion(); | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 512 | for (int i = 0; i < _torsioncalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:313:39: required from here 313 | return gradients ? E_OOP() : E_OOP(); | ~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 610 | for (int i = 0; i < _oopcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:313:56: required from here 313 | return gradients ? E_OOP() : E_OOP(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 610 | for (int i = 0; i < _oopcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:319:39: required from here 319 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 707 | for (int i = 0; i < _vdwcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:319:56: required from here 319 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 707 | for (int i = 0; i < _vdwcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:325:49: required from here 325 | return gradients ? E_Electrostatic() : E_Electrostatic(); | ~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 793 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:325:76: required from here 325 | return gradients ? E_Electrostatic() : E_Electrostatic(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 793 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::PerceiveAromatic()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1451:30: warning: ‘index’ may be used uninitialized [-Wmaybe-uninitialized] 1451 | ringbond = _mol.GetBond(first_rj, index); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1388:12: note: ‘index’ was declared here 1388 | int n, index, ringsize, first_rj, prev_rj, pi_electrons, c60; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1451:30: warning: ‘first_rj’ may be used uninitialized [-Wmaybe-uninitialized] 1451 | ringbond = _mol.GetBond(first_rj, index); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1388:29: note: ‘first_rj’ was declared here 1388 | int n, index, ringsize, first_rj, prev_rj, pi_electrons, c60; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:44: In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2765:38: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2765:38: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2775:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2775:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: warning: ‘MEM[(const struct OBFFAngleCalculationMMFF94 &)&anglecalc].theta’ may be used uninitialized [-Wmaybe-uninitialized] 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: warning: ‘MEM[(const struct OBFFAngleCalculationMMFF94 &)&anglecalc].delta’ may be used uninitialized [-Wmaybe-uninitialized] In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ was declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_theta’ may be used uninitialized [-Wmaybe-uninitialized] 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_rab’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_rbc’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].theta’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].energy’ was declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&strbndcalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].rbc’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].rbc’ was declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_ab_a’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_ab_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_bc_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_bc_c’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_abc_a’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_abc_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_abc_c’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&strbndcalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_ab_a’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_ab_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_bc_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_bc_c’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_abc_a’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_abc_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3096:34: warning: ‘MEM[(const struct OBFFTorsionCalculationMMFF94 &)&torsioncalc].tor’ may be used uninitialized [-Wmaybe-uninitialized] 3096 | OBFFTorsionCalculationMMFF94 torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationMMFF94::OBFFTorsionCalculationMMFF94(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:61:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3357:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3096:34: note: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].energy’ was declared here 3096 | OBFFTorsionCalculationMMFF94 torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFTorsionCalculationMMFF94::OBFFTorsionCalculationMMFF94(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3357:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:61:9: warning: ‘MEM[(const struct OBFFTorsionCalculationMMFF94 &)&torsioncalc].cosine’ may be used uninitialized [-Wmaybe-uninitialized] 61 | class OBFFTorsionCalculationMMFF94 : public OBFFCalculation4 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3096:34: note: ‘MEM[(const struct OBFFTorsionCalculationMMFF94 &)&torsioncalc].cosine’ was declared here 3096 | OBFFTorsionCalculationMMFF94 torsioncalc; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3492:30: warning: ‘MEM[(const struct OBFFVDWCalculationMMFF94 &)&vdwcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 3492 | OBFFVDWCalculationMMFF94 vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationMMFF94::OBFFVDWCalculationMMFF94(OpenBabel::OBFFVDWCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:78:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationMMFF94*, OpenBabel::OBFFVDWCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationMMFF94*, OpenBabel::OBFFVDWCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3616:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3492:30: note: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ was declared here 3492 | OBFFVDWCalculationMMFF94 vdwcalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3625:40: warning: ‘MEM[(const struct OBFFElectrostaticCalculationMMFF94 &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 3625 | OBFFElectrostaticCalculationMMFF94 elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationMMFF94::OBFFElectrostaticCalculationMMFF94(OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:89:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationMMFF94*, OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationMMFF94*, OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3678:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3625:40: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 3625 | OBFFElectrostaticCalculationMMFF94 elecalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4336:13: warning: ‘etot’ may be used uninitialized [-Wmaybe-uninitialized] 4336 | delta = (Energy() - etot); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:12: note: ‘etot’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:31: In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4308:15: /usr/include/bits/stdio2.h:68:35: warning: ‘ebond’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:18: note: ‘ebond’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4312:15: /usr/include/bits/stdio2.h:68:35: warning: ‘eangle’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:25: note: ‘eangle’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4320:15: /usr/include/bits/stdio2.h:68:35: warning: ‘eoop’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:33: note: ‘eoop’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4316:15: /usr/include/bits/stdio2.h:68:35: warning: ‘estbn’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:39: note: ‘estbn’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4324:15: /usr/include/bits/stdio2.h:68:35: warning: ‘etor’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:46: note: ‘etor’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4328:15: /usr/include/bits/stdio2.h:68:35: warning: ‘evdw’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:52: note: ‘evdw’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4332:15: /usr/include/bits/stdio2.h:68:35: warning: ‘eeq’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:58: note: ‘eeq’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~ [95/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘void OpenBabel::OBFFElectrostaticCalculationUFF::Compute()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:516:49: warning: ‘static double OpenBabel::OBForceField::VectorLengthDerivative(OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 516 | rab = OBForceField::VectorLengthDerivative(da, db); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1569:19: note: declared here 1569 | static double VectorLengthDerivative(vector3 &a, vector3 &b); | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In instantiation of ‘void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:479:37: required from ‘double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = true]’ 479 | i->template Compute(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:193:37: required from here 193 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:432:14: warning: unused variable ‘ab’ [-Wunused-variable] 432 | double ab[3]; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In instantiation of ‘void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:479:37: required from ‘double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = false]’ 479 | i->template Compute(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:193:54: required from here 193 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:432:14: warning: unused variable ‘ab’ [-Wunused-variable] 432 | double ab[3]; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: warning: ‘MEM[(const struct OBFFElectrostaticCalculationUFF &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].energy’ was declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9: warning: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 30 | class OBFFBondCalculationUFF : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].rab’ was declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9: warning: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].delta’ may be used uninitialized [-Wmaybe-uninitialized] 30 | class OBFFBondCalculationUFF : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].delta’ was declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].theta’ may be used uninitialized [-Wmaybe-uninitialized] 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].delta’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rij’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rjk’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rik’ may be used uninitialized [-Wmaybe-uninitialized] In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].at’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].at’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘MEM [(struct OBFFAngleCalculationUFF *)&anglecalc + 156B]’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM [(struct OBFFAngleCalculationUFF *)&anglecalc + 156B]’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘anglecalc.n’ may be used uninitialized [-Wmaybe-uninitialized] [96/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addfilename.cpp [97/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addinindex.cpp [98/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addpolarh.cpp [99/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addnonpolarh.cpp [100/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/canonical.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/canonical.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [101/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp: In member function ‘virtual bool OpenBabel::OpChangeCell::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp:91:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 91 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 122 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ [102/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/delpolarh.cpp [103/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/delnonpolarh.cpp [104/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/gen2D.cpp [105/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/fillUC.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/fillUC.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [106/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp: In member function ‘virtual bool OpenBabel::OpMinimize::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp:282:10: warning: unused variable ‘done’ [-Wunused-variable] 282 | bool done = true; | ^~~~ [107/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/gen3d.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/gen3d.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [108/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/largest.cpp [109/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/loader.cpp [110/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/neutralize.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/neutralize.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [111/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp: In member function ‘virtual bool OpenBabel::OpSplit::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp:95:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 95 | if(!pConv) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp:98:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 98 | if(pConv->IsFirstInput()) | ^~ [112/538] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -shared -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/CMakeFiles/openbabel.dir/link.d -Wl,-soname,libopenbabel.so.8 -o lib64/libopenbabel.so.8.0.0 src/CMakeFiles/openbabel.dir/alias.cpp.o src/CMakeFiles/openbabel.dir/atom.cpp.o src/CMakeFiles/openbabel.dir/base.cpp.o src/CMakeFiles/openbabel.dir/bitvec.cpp.o src/CMakeFiles/openbabel.dir/bond.cpp.o src/CMakeFiles/openbabel.dir/bondtyper.cpp.o src/CMakeFiles/openbabel.dir/builder.cpp.o src/CMakeFiles/openbabel.dir/macrocycle.cpp.o src/CMakeFiles/openbabel.dir/canon.cpp.o src/CMakeFiles/openbabel.dir/chains.cpp.o src/CMakeFiles/openbabel.dir/chargemodel.cpp.o src/CMakeFiles/openbabel.dir/data.cpp.o src/CMakeFiles/openbabel.dir/data_utilities.cpp.o src/CMakeFiles/openbabel.dir/descriptor.cpp.o src/CMakeFiles/openbabel.dir/elements.cpp.o src/CMakeFiles/openbabel.dir/fingerprint.cpp.o src/CMakeFiles/openbabel.dir/forcefield.cpp.o src/CMakeFiles/openbabel.dir/format.cpp.o src/CMakeFiles/openbabel.dir/generic.cpp.o src/CMakeFiles/openbabel.dir/graphsym.cpp.o src/CMakeFiles/openbabel.dir/grid.cpp.o src/CMakeFiles/openbabel.dir/griddata.cpp.o src/CMakeFiles/openbabel.dir/isomorphism.cpp.o src/CMakeFiles/openbabel.dir/kekulize.cpp.o src/CMakeFiles/openbabel.dir/locale.cpp.o src/CMakeFiles/openbabel.dir/matrix.cpp.o src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o src/CMakeFiles/openbabel.dir/molchrg.cpp.o src/CMakeFiles/openbabel.dir/mol.cpp.o src/CMakeFiles/openbabel.dir/obconversion.cpp.o src/CMakeFiles/openbabel.dir/oberror.cpp.o src/CMakeFiles/openbabel.dir/obfunctions.cpp.o src/CMakeFiles/openbabel.dir/obiter.cpp.o src/CMakeFiles/openbabel.dir/obutil.cpp.o src/CMakeFiles/openbabel.dir/op.cpp.o src/CMakeFiles/openbabel.dir/parsmart.cpp.o src/CMakeFiles/openbabel.dir/patty.cpp.o src/CMakeFiles/openbabel.dir/phmodel.cpp.o src/CMakeFiles/openbabel.dir/plugin.cpp.o src/CMakeFiles/openbabel.dir/pointgroup.cpp.o src/CMakeFiles/openbabel.dir/query.cpp.o src/CMakeFiles/openbabel.dir/rand.cpp.o src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o src/CMakeFiles/openbabel.dir/residue.cpp.o src/CMakeFiles/openbabel.dir/ring.cpp.o src/CMakeFiles/openbabel.dir/rotamer.cpp.o src/CMakeFiles/openbabel.dir/rotor.cpp.o src/CMakeFiles/openbabel.dir/spectrophore.cpp.o src/CMakeFiles/openbabel.dir/tautomer.cpp.o src/CMakeFiles/openbabel.dir/tokenst.cpp.o src/CMakeFiles/openbabel.dir/transform.cpp.o src/CMakeFiles/openbabel.dir/typer.cpp.o src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o src/CMakeFiles/openbabel.dir/conformersearch.cpp.o src/CMakeFiles/openbabel.dir/confsearch.cpp.o src/CMakeFiles/openbabel.dir/distgeom.cpp.o src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o src/CMakeFiles/openbabel.dir/depict/depict.cpp.o src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o src/CMakeFiles/openbabel.dir/math/vector3.cpp.o src/CMakeFiles/openbabel.dir/math/align.cpp.o src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o /usr/lib64/libm.so -ldl /usr/lib64/libz.so && : [113/538] /usr/bin/cmake -E cmake_symlink_library lib64/libopenbabel.so.8.0.0 lib64/libopenbabel.so.8 lib64/libopenbabel.so && : [114/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/optransform.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/phmodel.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/optransform.h:19, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/optransform.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [115/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/scripts && /usr/bin/swig -perl5 -c++ -small -O -templatereduce -naturalvar -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -o /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/perl/openbabel-perl.cpp -outdir /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/openbabel-perl.i /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:404: Warning 509: Overloaded method OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:403: Warning 509: as it is shadowed by OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:407: Warning 509: Overloaded method OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:406: Warning 509: as it is shadowed by OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:410: Warning 509: Overloaded method OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:409: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:413: Warning 509: Overloaded method OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:412: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const &). [116/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/scripts && /usr/bin/swig -python -c++ -doxygen -small -O -templatereduce -naturalvar -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -o /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/python/openbabel/openbabel-python.cpp -DHAVE_EIGEN3 -outdir /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/python/openbabel /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/openbabel-python.i /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/isomorphism.h:160: Warning 325: Nested class not currently supported (Functor ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/spectrophore.h:571: Warning 312: Nested struct not currently supported (ignored). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/spectrophore.h:578: Warning 312: Nested struct not currently supported (ignored). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bitvec.h:59: Warning 560: Unknown Doxygen command: users. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:619: Warning 560: Unknown Doxygen command: f$a. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:619: Warning 560: Unknown Doxygen command: f$c. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:619: Warning 560: Unknown Doxygen command: f$S. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:628: Warning 560: Unknown Doxygen command: f$S. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:628: Warning 566: Unexpected iterator value in DoxygenParser::parse /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:649: Warning 562: Expected Doxygen command: f$. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:649: Warning 566: Unexpected iterator value in DoxygenParser::parse /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:649: Warning 561: Unexpected end of Doxygen comment encountered. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:624: Warning 560: Unknown Doxygen command: f$a. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:624: Warning 560: Unknown Doxygen command: f$c. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:631: Warning 560: Unknown Doxygen command: f$S. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:660: Warning 562: Expected Doxygen command: f$. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:660: Warning 566: Unexpected iterator value in DoxygenParser::parse /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:660: Warning 561: Unexpected end of Doxygen comment encountered. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:404: Warning 509: Overloaded method OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:403: Warning 509: as it is shadowed by OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:407: Warning 509: Overloaded method OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:406: Warning 509: as it is shadowed by OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:410: Warning 509: Overloaded method OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:409: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:413: Warning 509: Overloaded method OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:412: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const &). [117/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/partialcharges.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/partialcharges.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [118/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/readconformers.cpp [119/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/scripts && /usr/bin/swig -ruby -c++ -small -O -templatereduce -naturalvar -autorename -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -o /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/ruby/openbabel-ruby.txt /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/openbabel-ruby.i && sed -e '' -e's/void Init_OpenBabel/void Init_openbabel/' /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/ruby/openbabel-ruby.cpp && /usr/bin/cmake -E remove /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/ruby/openbabel-ruby.txt /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/isomorphism.h:160: Warning 325: Nested class not currently supported (Functor ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:404: Warning 509: Overloaded method OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:403: Warning 509: as it is shadowed by OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:407: Warning 509: Overloaded method OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:406: Warning 509: as it is shadowed by OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:410: Warning 509: Overloaded method OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:409: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:413: Warning 509: Overloaded method OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:412: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const &). [120/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/sort.cpp [121/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/ophighlight.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/ophighlight.cpp:16: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/ophighlight.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [122/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp:15: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/query.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.h:18, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp: In member function ‘virtual bool OpenBabel::OpNewS::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp:303:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 303 | if(pmol->NumHvyAtoms() != nPatternAtoms) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ [123/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/xout.cpp [124/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/conformersearch.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp: In member function ‘virtual bool OpenBabel::OpConformer::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:294:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 294 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){ | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:294:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 294 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){ | ~~^~~~~~~~~~~~~~~~~ [125/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opalign.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/align.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opalign.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opalign.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [126/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp: In member function ‘void OpenBabel::OpConfab::Run(OpenBabel::OBConversion*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp:167:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 167 | for (; c < mol.NumConformers(); ++c) { | ~~^~~~~~~~~~~~~~~~~~~~~ [127/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/gasteiger.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/gasteiger.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [128/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eem.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eem.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [129/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/none.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/none.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [130/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/mmff94.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/mmff94.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [131/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/fromfile.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/fromfile.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/fromfile.cpp: In member function ‘virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/fromfile.cpp:102:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 102 | for ( int i = 1; i <= mol.NumAtoms(); i++) | ~~^~~~~~~~~~~~~~~~~ [132/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eqeq.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eqeq.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eqeq.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [133/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qeq.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qeq.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qeq.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [134/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qtpie.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qtpie.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qtpie.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [135/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsmilesformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -MF src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o.d -o src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In constructor ‘OpenBabel::OBSmilesParser::OBSmilesParser(bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:291:10: warning: ‘OpenBabel::OBSmilesParser::_preserve_aromaticity’ will be initialized after [-Wreorder] 291 | bool _preserve_aromaticity; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:289:9: warning: ‘int OpenBabel::OBSmilesParser::_rxnrole’ [-Wreorder] 289 | int _rxnrole; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:318:5: warning: when initialized here [-Wreorder] 318 | OBSmilesParser(bool preserve_aromaticity=false): _preserve_aromaticity(preserve_aromaticity), _rxnrole(1) { } | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBSmilesParser::ParseSmiles(OpenBabel::OBMol&, const std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:669:15: warning: variable ‘atom’ set but not used [-Wunused-but-set-variable=] 669 | OBAtom* atom; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘int OpenBabel::OBSmilesParser::NumConnections(OpenBabel::OBAtom*, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2232:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2232 | if (idx-1 < _hcount.size() && _hcount[idx-1] > 0) | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2717:10: warning: variable ‘symbol’ set but not used [-Wunused-but-set-variable=] 2717 | char symbol[10]; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2721:10: warning: unused variable ‘normalValence’ [-Wunused-variable] 2721 | bool normalValence = true; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2722:10: warning: unused variable ‘writeExplicitHydrogen’ [-Wunused-variable] 2722 | bool writeExplicitHydrogen = false; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBMol2Cansmi::BuildCanonTree(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::vector&, OpenBabel::OBCanSmiNode*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3171:22: warning: unused variable ‘bond_order’ [-Wunused-variable] 3171 | unsigned int bond_order = bond->GetBondOrder(); | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3166:20: warning: unused variable ‘nbr_bond_order’ [-Wunused-variable] 3166 | unsigned int nbr_bond_order = nbr_bond->GetBondOrder(); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘std::vector OpenBabel::OBMol2Cansmi::GetCanonClosureDigits(OpenBabel::OBAtom*, OpenBabel::OBBitVec&, std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3318:11: warning: unused variable ‘bo’ [-Wunused-variable] 3318 | int bo = (bond1->IsAromatic())? 1 : bond1->GetBondOrder(); // CJ: why was this line added? bo is never used? | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘void OpenBabel::OBMol2Cansmi::CreateFragCansmiString(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3931:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3931 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3937 | for (int i=0; i >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2889:35: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2889 | snprintf(tcount, 10, "%d", i); | ^ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obmolecformat.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:23: In function ‘snprintf’, inlined from ‘OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2889:19: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2897:35: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2897 | snprintf(tcount, 10, "%d", hcount); | ^ In function ‘snprintf’, inlined from ‘OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2897:19: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘OpenBabel::OBMol2Cansmi::ToCansmilesString(OpenBabel::OBCanSmiNode*, std::__cxx11::basic_string, std::allocator >&, OpenBabel::OBBitVec&, std::vector >&, std::vector >&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3563:32: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 8 [-Wformat-truncation=] 3563 | snprintf(digits, 8, "%d", bci->ringdigit); | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3563:31: note: directive argument in the range [-2147483648, 99] 3563 | snprintf(digits, 8, "%d", bci->ringdigit); | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBMol2Cansmi::ToCansmilesString(OpenBabel::OBCanSmiNode*, std::__cxx11::basic_string, std::allocator >&, OpenBabel::OBBitVec&, std::vector >&, std::vector >&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3563:19: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 12 bytes into a destination of size 8 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [136/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmol2format_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -MF src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o.d -o src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp: In member function ‘virtual int OpenBabel::MOL2Format::SkipObjects(int, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp:794:10: warning: unused variable ‘ch’ [-Wunused-variable] 794 | char ch = ifs.peek(); | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp:86:15: warning: ‘bool OpenBabel::IsThiocarboxylSulfur(OBAtom*)’ defined but not used [-Wunused-function] 86 | static bool IsThiocarboxylSulfur(OBAtom* queryatom) | ^~~~~~~~~~~~~~~~~~~~ [137/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpdbformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -MF src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o.d -o src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obfunctions.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:612:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 612 | if (origin == pUC->GetSpaceGroup()->HEXAGONAL_ORIGIN) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:681:58: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 681 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obmolecformat.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:17: In function ‘snprintf’, inlined from ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:681:21: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:701:70: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 701 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^ In function ‘snprintf’, inlined from ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:701:29: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:739:35: warning: ‘%+d’ directive output may be truncated writing between 2 and 6 bytes into a region of size 3 [-Wformat-truncation=] 739 | snprintf(scharge, 3, "%+d", charge); | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:739:34: note: directive argument in the range [-32768, 32767] 739 | snprintf(scharge, 3, "%+d", charge); | ^~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:739:21: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 3 and 7 bytes into a destination of size 3 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘OpenBabel::PDBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32761 [-Wstringop-truncation] 299 | strncpy(integerBuffer, buffer+columnAsSpecifiedInPDB-1, 5); | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32756 [-Wstringop-truncation] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32751 [-Wstringop-truncation] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32746 [-Wstringop-truncation] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32741 [-Wstringop-truncation] [138/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmdlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -MF src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o.d -o src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h: In function ‘unsigned int MDLValence(unsigned int, int, unsigned int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:51:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 51 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:51:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 51 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:64:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 64 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:64:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 64 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:77:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 77 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:77:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 77 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:90:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 90 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:90:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 90 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:103:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 103 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:103:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 103 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:116:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 116 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:116:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 116 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:119:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 119 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:119:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 119 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:121:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 121 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:121:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 121 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:134:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 134 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:134:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 134 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:137:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 137 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:137:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 137 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:139:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 139 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:139:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 139 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:152:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 152 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:152:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 152 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:155:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 155 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:155:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 155 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:157:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 157 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:157:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 157 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:170:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 170 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:170:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 170 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:173:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 173 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:173:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 173 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:175:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:175:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:188:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 188 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:188:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 188 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:191:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 191 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:191:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 191 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:193:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 193 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:193:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 193 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:206:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 206 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:206:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 206 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:209:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 209 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:209:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 209 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:211:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 211 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:211:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 211 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:223:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 223 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:223:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 223 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:226:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 226 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:226:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 226 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:228:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 228 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:228:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 228 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:240:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 240 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:240:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 240 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:243:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 243 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:243:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 243 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:245:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 245 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:245:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 245 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:257:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 257 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:257:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 257 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:260:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 260 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:260:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 260 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:262:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 262 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:262:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 262 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:274:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 274 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:274:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 274 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:277:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 277 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:277:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 277 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:279:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 279 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:279:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 279 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:291:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 291 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:291:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 291 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:294:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 294 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:294:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 294 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:296:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 296 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:296:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 296 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:298:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 298 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:298:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 298 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:310:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 310 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:310:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 310 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:313:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 313 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:313:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 313 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:315:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 315 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:315:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 315 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:317:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 317 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:317:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 317 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:329:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 329 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:329:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 329 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:332:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 332 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:332:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 332 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:334:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 334 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:334:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 334 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:336:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 336 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:336:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 336 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:348:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 348 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:348:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 348 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:351:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 351 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:351:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 351 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:353:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 353 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:353:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 353 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:355:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 355 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:355:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 355 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:367:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 367 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:367:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 367 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:370:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 370 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:370:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 370 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:372:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 372 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:372:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 372 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:374:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 374 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:374:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 374 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:385:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 385 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:385:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 385 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:388:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 388 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:388:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 388 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:390:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 390 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:390:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 390 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:392:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 392 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:392:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 392 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:394:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 394 | if (val <= 3) return 3; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:394:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 394 | if (val <= 3) return 3; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h: In function ‘unsigned int HYDValence(unsigned int, int, unsigned int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:416:11: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 416 | if (val > impval) { | ~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘virtual bool OpenBabel::MDLFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:776:20: warning: variable ‘count’ set but not used [-Wunused-but-set-variable=] 776 | unsigned int count = 0; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘bool OpenBabel::MDLFormat::ReadAtomBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1502:10: warning: unused variable ‘chiralWatch’ [-Wunused-variable] 1502 | bool chiralWatch=false; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘OpenBabel::MDLFormat::GetTimeDate[abi:cxx11]()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1730:27: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 9 [-Wformat-truncation=] 1730 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1730:22: note: directive argument in the range [-2147483648, 2147483547] 1730 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/iomanip:47, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:27: In function ‘snprintf’, inlined from ‘OpenBabel::MDLFormat::GetTimeDate[abi:cxx11]()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1730:13: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 11 and 56 bytes into a destination of size 11 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [139/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -MF src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o.d -o src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/getinchi.cpp [140/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -MF src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o.d -o src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/unique.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/unique.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h: In member function ‘bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ [141/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o -MF src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o.d -o src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp:32: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h: In member function ‘bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp: In member function ‘virtual bool OpenBabel::InChIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp:194:52: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘AT_NUM’ {aka ‘short int’} [-Wsign-compare] 194 | if ( !(a->GetId() == ct->end || a->GetId() == stereo.neighbor[0] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp:200:54: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘AT_NUM’ {aka ‘short int’} [-Wsign-compare] 200 | if ( !(b->GetId() == ct->begin || b->GetId() == stereo.neighbor[3] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ [142/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dasciiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -MF src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o.d -o src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/asciiformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/asciiformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [143/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dasciiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o.d -o src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/asciipainter.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::DrawText(double, double, const std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/asciipainter.cpp:118:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 118 | for (int i=0; i _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [147/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dnulformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o -MF src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o.d -o src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nulformat.cpp [148/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpainterformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -MF src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o.d -o src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/commandpainter.cpp [149/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpainterformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -MF src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o.d -o src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/depict.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp: In member function ‘virtual bool OpenBabel::PainterFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp:113:12: warning: unused variable ‘ofs’ [-Wunused-variable] 113 | ostream& ofs = *pConv->GetOutStream(); | ^~~ [150/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dreportformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o -MF src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o.d -o src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/reportformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/reportformat.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [151/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpovrayformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -MF src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o.d -o src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp: In member function ‘void OpenBabel::PovrayFormat::OutputHeader(std::ostream&, OpenBabel::OBMol&, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp:173:12: warning: variable ‘time_res’ set but not used [-Wunused-but-set-variable=] 173 | size_t time_res; /* Result of strftime */ | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp: In member function ‘virtual bool OpenBabel::PovrayFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp:807:17: warning: unused variable ‘title’ [-Wunused-variable] 807 | const char* title = pmol->GetTitle(); | ^~~~~ [152/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtextformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/textformat.dir/textformat.cpp.o -MF src/formats/CMakeFiles/textformat.dir/textformat.cpp.o.d -o src/formats/CMakeFiles/textformat.dir/textformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/textformat.cpp [153/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsvgformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o -MF src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o.d -o src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/depict.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp: In member function ‘virtual bool OpenBabel::SVGFormat::WriteChemObject(OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:226:42: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 226 | bool nomore = _nmax && (_objects.size()==_nmax); | ~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:248:18: warning: unused variable ‘n’ [-Wunused-variable] 248 | unsigned int n=0; | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp: In member function ‘virtual bool OpenBabel::SVGFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:273:8: warning: unused variable ‘ret’ [-Wunused-variable] 273 | bool ret = WriteSVG(pConv,_objects); | ^~~ [154/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtitleformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o -MF src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o.d -o src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/titleformat.cpp [155/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpngformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o -MF src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o.d -o src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pngformat.cpp [156/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dconfabreport_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o -MF src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o.d -o src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/align.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp: In member function ‘void OpenBabel::ConfabReport::WriteOutput(std::ostream&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp:129:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 129 | for (int i=1; i < binvals.size(); i++) | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp:134:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | for (int i=1; i < cumbins.size(); i++) | ~~^~~~~~~~~~~~~~~~ [157/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dacesformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o -MF src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o.d -o src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acesformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acesformat.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [158/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dabinitformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o -MF src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o.d -o src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp: In member function ‘virtual bool OpenBabel::ABINITFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp:99:12: warning: variable ‘acell’ set but not used [-Wunused-but-set-variable=] 99 | double acell[3]; // scale of lattice vectors | ^~~~~ [159/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Daoforceformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -MF src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o.d -o src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/aoforceformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/aoforceformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [160/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcastepformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o -MF src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o.d -o src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp: In member function ‘OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:195:21: warning: ‘pressure’ may be used uninitialized [-Wmaybe-uninitialized] 195 | pv = volume * pressure * GPA_A3_TO_KCAL_PER_MOL; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:94:12: note: ‘pressure’ was declared here 94 | double pressure, volume, enthalpy; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:195:21: warning: ‘volume’ may be used uninitialized [-Wmaybe-uninitialized] 195 | pv = volume * pressure * GPA_A3_TO_KCAL_PER_MOL; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:94:22: note: ‘volume’ was declared here 94 | double pressure, volume, enthalpy; | ^~~~~~ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obmolecformat.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:16: In function ‘snprintf’, inlined from ‘OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:211:17: /usr/include/bits/stdio2.h:68:35: warning: ‘enthalpy’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp: In member function ‘OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:94:30: note: ‘enthalpy’ was declared here 94 | double pressure, volume, enthalpy; | ^~~~~~~~ [161/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dadfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o -MF src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o.d -o src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:38: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:46: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp: In member function ‘bool OpenBabel::OBT41Format::ReadASCII(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:875:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 875 | while( buf != "Geometry" && ifs ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:875:53: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 875 | while( buf != "Geometry" && ifs ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:888:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 888 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:888:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 888 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:910:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 910 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:910:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 910 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:925:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 925 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:925:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 925 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:940:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 940 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:940:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 940 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ [162/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Ddaltonformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -MF src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o.d -o src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp: In member function ‘virtual bool OpenBabel::DALTONInputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:147:9: warning: variable ‘atomcount’ set but not used [-Wunused-but-set-variable=] 147 | int atomcount = 0; // for each atom type | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp: In member function ‘virtual bool OpenBabel::DALTONInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:311:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 311 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:331:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 331 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ [163/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcrystal09format_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -MF src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o.d -o src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/crystal09format.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/crystal09format.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [164/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Ddmolformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -MF src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o.d -o src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/dmolformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/dmolformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [165/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -MF src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o.d -o src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fhiaimsformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fhiaimsformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [166/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfchkformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -MF src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o.d -o src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp: In member function ‘virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:596:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 596 | if (alphaorb_found && (numAOrb > alphaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:609:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 609 | if (betaorb_found && (numBOrb > betaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:700:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 700 | if (numAOrb > 0 && alphaorb.size() == numAOrb) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:704:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 704 | if (numBOrb > 0 && betaorb.size() == numBOrb) { // open shell calculation | ~~~~~~~~~~~~~~~^~~~~~~~~~ [167/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgamessformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -MF src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o.d -o src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp: In member function ‘virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:589:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 589 | for (unsigned int i=0; i < modeCount; ++i) { | ~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:233:9: warning: variable ‘ndummyatoms’ set but not used [-Wunused-but-set-variable=] 233 | int ndummyatoms = 0; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:521:11: warning: ‘lowFreqModesBegin’ may be used uninitialized [-Wmaybe-uninitialized] 521 | if (numFreq < lowFreqModesBegin) // imaginary frequency | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:244:9: note: ‘lowFreqModesBegin’ was declared here 244 | int lowFreqModesBegin; // the number of the first low frequency mode | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:523:11: warning: ‘lowFreqModesEnd’ may be used uninitialized [-Wmaybe-uninitialized] 523 | if (numFreq > lowFreqModesEnd) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:245:9: note: ‘lowFreqModesEnd’ was declared here 245 | int lowFreqModesEnd; // the number of the last low frequency mode | ^~~~~~~~~~~~~~~ [168/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgausscubeformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -MF src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o.d -o src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:30: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp: In member function ‘virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:432:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 432 | while (vgd.size() < nCubes) | ~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:479:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 479 | while (values.size() < n*nCubes) | ~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:114:17: warning: unused variable ‘title’ [-Wunused-variable] 114 | const char* title = pConv->GetTitle(); | ^~~~~ [169/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgaussformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -MF src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o.d -o src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp: In function ‘void OpenBabel::add_unique_pairdata_to_mol(OBMol*, std::string, std::string, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp:284:19: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 284 | if (vs.size() >= start) | ~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp:287:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 287 | for(i=start+1; (i=natoms) || (molecule->GetAtom(i+1)->GetAtomicNum() != atoi(vs[2].c_str()))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadMultipoleMoment(std::istream*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:306:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 306 | else if (vs[0][0] == '1') | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadPartialCharges(std::istream*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:423:56: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 423 | if (molecule->GetAtom(i++)->GetAtomicNum() != charge) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadMEPCalculation(std::istream*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:571:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 571 | if (energies.size() != molecule->NumConformers()) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::istream*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:932:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 932 | if (atoi(buffer) != natoms) | ~~~~~~~~~~~~~^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:111:20: warning: ‘OpenBabel::BETA_ORBITAL_PATTERN’ defined but not used [-Wunused-variable] 111 | static const char* BETA_ORBITAL_PATTERN = "Beta"; | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘OpenBabel::NWChemOutputFormat::ReadCoordinates(std::basic_istream >*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:202:13: warning: ‘coordinates’ may be used uninitialized [-Wmaybe-uninitialized] 202 | double* coordinates; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::basic_istream >*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:957:21: warning: ‘nbeads’ may be used uninitialized [-Wmaybe-uninitialized] 957 | if (bead_number != nbeads) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:900:18: note: ‘nbeads’ was declared here 900 | unsigned int nbeads; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘OpenBabel::NWChemOutputFormat::ReadSinglePointCalculation(std::basic_istream >*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:772:5: warning: ‘energy’ may be used uninitialized [-Wmaybe-uninitialized] 772 | if (energy == 0) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:750:12: note: ‘energy’ was declared here 750 | double energy; | ^~~~~~ [178/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dqchemformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o -MF src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o.d -o src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/qchemformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/qchemformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/qchemformat.cpp: In member function ‘virtual bool OpenBabel::QChemOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/qchemformat.cpp:194:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 194 | if (nbAtomRead != mol.NumAtoms()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [179/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsiestaformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o -MF src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o.d -o src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp: In member function ‘virtual bool OpenBabel::SIESTAFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp:92:10: warning: variable ‘coordsAreAngstrom’ set but not used [-Wunused-but-set-variable=] 92 | bool coordsAreAngstrom = false; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp:98:12: warning: variable ‘size’ set but not used [-Wunused-but-set-variable=] 98 | size_t size; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp:102:30: warning: unused variable ‘numSpecies’ [-Wunused-variable] 102 | int atomicNum, numAtoms, numSpecies; | ^~~~~~~~~~ [180/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dturbomoleformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -MF src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o.d -o src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/turbomoleformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/turbomoleformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [181/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dxsfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o -MF src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o.d -o src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/xsfformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/xsfformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [182/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dzindoformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o -MF src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o.d -o src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/zindoformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/zindoformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [183/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dvaspformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o -MF src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o.d -o src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp: In member function ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:461:17: warning: unused variable ‘freqnum’ [-Wunused-variable] 461 | int freqnum = atoi(vs[0].c_str()); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp: In member function ‘virtual bool OpenBabel::VASPFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:678:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 678 | for(int i = 0; i < atoms_sorted.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp: In member function ‘OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:420:21: warning: ‘fermi’ may be used uninitialized [-Wmaybe-uninitialized] 420 | dos->SetData(fermi, energies, densities, integration); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:402:14: note: ‘fermi’ was declared here 402 | double fermi; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:566:14: warning: ‘enthalpy_eV’ may be used uninitialized [-Wmaybe-uninitialized] 566 | double en_kcal_per_mole = enthalpy_eV * EV_TO_KCAL_PER_MOL; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:173:12: note: ‘enthalpy_eV’ was declared here 173 | double enthalpy_eV, pv_eV; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:567:14: warning: ‘pv_eV’ may be used uninitialized [-Wmaybe-uninitialized] 567 | double pv_kcal_per_mole = pv_eV * EV_TO_KCAL_PER_MOL; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:173:25: note: ‘pv_eV’ was declared here 173 | double enthalpy_eV, pv_eV; | ^~~~~ [184/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgamessukformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -MF src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o.d -o src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp:16: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp: In member function ‘bool OpenBabel::GAMESSUKOutputFormat::ReadInitialCartesian(OpenBabel::OBMol&, std::istream&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp:813:26: warning: catching polymorphic type ‘class std::regex_error’ by value [-Wcatch-value=] 813 | } catch (regex_error ex) { | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp: In member function ‘bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz2(OpenBabel::OBMol&, std::istream&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp:907:12: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable=] 907 | bool ok=false; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp: In member function ‘virtual bool OpenBabel::GAMESSUKOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp:1222:12: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable=] 1222 | bool ok; | ^~ [185/538] /usr/bin/g++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o -MF src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o.d -o src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/APIInterface.cpp [186/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DCSRformat_EXPORTS -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o -MF src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o.d -o src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/CSRformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/CSRformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [187/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dorcaformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o -MF src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o.d -o src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp: In member function ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:385:33: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 385 | while(vs.size() == nColumn+1) { | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:400:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 400 | for (unsigned int i = 0; i < nColumn; i++) { | ~~^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:412:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 412 | for (unsigned int i = 0; i < nColumn; i++) { | ~~^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:131:12: warning: unused variable ‘energy’ [-Wunused-variable] 131 | double energy=0; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:138:9: warning: variable ‘nModeAll’ set but not used [-Wunused-but-set-variable=] 138 | int nModeAll = 0; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp: In member function ‘std::string OpenBabel::OrcaOutputFormat::checkColumns(std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:759:26: warning: catching polymorphic type ‘class std::regex_error’ by value [-Wcatch-value=] 759 | } catch (regex_error ex) { | ^~ [188/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o -MF src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o.d -o src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/PQSformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/PQSformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/PQSformat.cpp: In member function ‘OpenBabel::PQSFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/PQSformat.cpp:234:24: warning: ‘__strncat_chk’ output may be truncated copying between 0 and 255 bytes from a string of length 255 [-Wstringop-truncation] 234 | strncat(full_coord_path, coord_file, | ^ [189/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dalchemyformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -MF src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o.d -o src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/alchemyformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/alchemyformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [190/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dacrformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o -MF src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o.d -o src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp: In member function ‘OpenBabel::ACRFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp:166:12: warning: ‘atoms’ may be used uninitialized [-Wmaybe-uninitialized] 166 | } else if ( pmol->NumAtoms() != atoms ) { | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp:95:18: note: ‘atoms’ was declared here 95 | unsigned int atoms, bonds, tmp; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp:162:5: warning: ‘bonds’ may be used uninitialized [-Wmaybe-uninitialized] 162 | if ( pmol->NumBonds() != bonds ) { | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp:95:25: note: ‘bonds’ was declared here 95 | unsigned int atoms, bonds, tmp; | ^~~~~ [191/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Damberformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o -MF src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o.d -o src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/amberformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/amberformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [192/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dbalstformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o -MF src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o.d -o src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/balstformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/balstformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [193/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dbgfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o -MF src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o.d -o src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/bgfformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/bgfformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [194/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -MF src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o.d -o src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp: In member function ‘void OpenBabel::MCDLFormat::solve(int, int (*)[4], int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:260:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 260 | if (depth > maxdepth) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:264:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 264 | for (i=0; i<=MAXFRAGS; i++) strngs[i]=(char *)calloc(MAXFRAGS,sizeof(char)); | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:289:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 289 | if (jflag) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:293:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 293 | nt = 1; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp: In member function ‘void OpenBabel::MCDLFormat::setMCDL(std::string, OpenBabel::OBMol*, std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:1287:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1287 | if (nPrev == acount) { | ~~~~~~^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp: In member function ‘int OpenBabel::MCDLFormat::indexOf(std::string, std::string, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:1417:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 1417 | if (result == string::npos) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:1418:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1418 | if (result >= instring.length()) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp: In member function ‘int OpenBabel::MCDLFormat::lastIndexOf(std::string, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:1431:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 1431 | if (n == string::npos) | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp: In member function ‘OpenBabel::MCDLFormat::solve(int, int (*) [4], int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:247:32: warning: ‘jump’ may be used uninitialized [-Wmaybe-uninitialized] 247 | int numdups = 0, dupfrag, jump; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:404:17: warning: ‘dupfrag’ may be used uninitialized [-Wmaybe-uninitialized] 404 | if (ix[i] > dupfrag) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:247:23: note: ‘dupfrag’ was declared here 247 | int numdups = 0, dupfrag, jump; | ^~~~~~~ [195/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dboxformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o -MF src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o.d -o src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/boxformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/boxformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [196/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcacheformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o -MF src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o.d -o src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cacheformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cacheformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [197/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcacaoformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -MF src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o.d -o src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cacaoformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cacaoformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [198/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcccformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o -MF src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o.d -o src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cccformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cccformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [199/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcarformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/carformat.dir/carformat.cpp.o -MF src/formats/CMakeFiles/carformat.dir/carformat.cpp.o.d -o src/formats/CMakeFiles/carformat.dir/carformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/carformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/carformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [200/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchem3dformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -MF src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o.d -o src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chem3dformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chem3dformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [201/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchemdrawct_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -MF src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o.d -o src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawct.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawct.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [202/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchemdrawcdx_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -MF src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o.d -o src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:277:28: warning: ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’ was hidden [-Woverloaded-virtual=] 277 | virtual const char *GetTitle(bool /*replaceNewlines*/ = true) const { return ""; } | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:99:15: note: by ‘std::string OpenBabel::OBReaction::GetTitle() const’ 99 | std::string GetTitle() const { return _title; } | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:278:21: warning: ‘virtual void OpenBabel::OBBase::SetTitle(const char*)’ was hidden [-Woverloaded-virtual=] 278 | virtual void SetTitle(const char *) {} | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:101:8: note: by ‘void OpenBabel::OBReaction::SetTitle(const std::string&)’ 101 | void SetTitle(const std::string& title) { _title=title; } | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp: In member function ‘bool OpenBabel::ChemDrawBinaryXFormat::TopLevelParse(OpenBabel::CDXReader&, OpenBabel::OBConversion*, CDXObjectID)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:74:1: warning: macro expands to multiple statements [-Wmultistatement-macros] 74 | (stream).read ((char*)&data, sizeof(data)); \ | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:319:13: note: in expansion of macro ‘READ_INT16’ 319 | READ_INT16(ss,type2); | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:318:11: note: some parts of macro expansion are not guarded by this ‘else’ clause 318 | else | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp: In member function ‘bool OpenBabel::ChemDrawBinaryXFormat::DoReaction(OpenBabel::CDXReader&, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:339:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 339 | for(unsigned i=0;iNumAtoms();++idx) | ~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp: In member function ‘bool OpenBabel::ChemDrawBinaryXFormat::DoFragmentImpl(OpenBabel::CDXReader&, OpenBabel::OBMol*, std::map&, std::map&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:77:1: warning: macro expands to multiple statements [-Wmultistatement-macros] 77 | (stream).read ((char*)&data, sizeof(data)); \ | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:510:13: note: in expansion of macro ‘READ_INT32’ 510 | READ_INT32(cdxr.data(), charge); | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:509:11: note: some parts of macro expansion are not guarded by this ‘else’ clause 509 | else | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:478:27: warning: variable ‘hasElement’ set but not used [-Wunused-but-set-variable=] 478 | bool isAlias=false, hasElement=false; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:622:17: warning: ‘bgnIdx’ may be used uninitialized [-Wmaybe-uninitialized] 622 | if(!order || !bgnIdx || !endIdx) | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:581:11: note: ‘bgnIdx’ was declared here 581 | int bgnIdx, endIdx ; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:622:28: warning: ‘endIdx’ may be used uninitialized [-Wmaybe-uninitialized] 622 | if(!order || !bgnIdx || !endIdx) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:581:19: note: ‘endIdx’ was declared here 581 | int bgnIdx, endIdx ; | ^~~~~~ [203/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchemtoolformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -MF src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o.d -o src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemtoolformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemtoolformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [204/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchemkinformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -MF src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o.d -o src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemkinformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemkinformat.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemkinformat.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:278:21: warning: ‘virtual void OpenBabel::OBBase::SetTitle(const char*)’ was hidden [-Woverloaded-virtual=] 278 | virtual void SetTitle(const char *) {} | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemkinformat.cpp:32: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:101:8: note: by ‘void OpenBabel::OBReaction::SetTitle(const std::string&)’ 101 | void SetTitle(const std::string& title) { _title=title; } | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:277:28: warning: ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’ was hidden [-Woverloaded-virtual=] 277 | virtual const char *GetTitle(bool /*replaceNewlines*/ = true) const { return ""; } | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:99:15: note: by ‘std::string OpenBabel::OBReaction::GetTitle() const’ 99 | std::string GetTitle() const { return _title; } | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemkinformat.cpp: In member function ‘bool OpenBabel::ChemKinFormat::ReadReactionQualifierLines(std::istream&, OpenBabel::OBReaction*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemkinformat.cpp:656:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 656 | for(int i=0;iReactionType) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemkinformat.cpp:927:11: warning: enumeration value ‘THREEBODY’ not handled in switch [-Wswitch] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemkinformat.cpp:1006:11: warning: enumeration value ‘ARRHENIUS’ not handled in switch [-Wswitch] 1006 | switch(pRD->ReactionType) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemkinformat.cpp:1006:11: warning: enumeration value ‘SRI’ not handled in switch [-Wswitch] [205/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcofformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o -MF src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o.d -o src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp: In member function ‘virtual bool OpenBabel::COFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp:137:22: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 137 | if(vs.size() < offset+9) | ~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 184 | for(int j=0 ; j< natoms ; j++) | ~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp: In member function ‘virtual bool OpenBabel::COFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp:372:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 372 | for( int j=0; j resBondFromOffset) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ [212/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfastsearchformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -MF src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o.d -o src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fastsearchformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fastsearchformat.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fastsearchformat.cpp: In member function ‘void OpenBabel::FastSearchFormat::AddPattern(std::vector&, OpenBabel::OBMol, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fastsearchformat.cpp:690:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 690 | if(idx>=patternMol.NumBonds()) | ~~~^~~~~~~~~~~~~~~~~~~~~~~ [213/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfeatformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/featformat.dir/featformat.cpp.o -MF src/formats/CMakeFiles/featformat.dir/featformat.cpp.o.d -o src/formats/CMakeFiles/featformat.dir/featformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/featformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/featformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [214/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfhformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o -MF src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o.d -o src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fhformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fhformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [215/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfingerprintformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -MF src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o.d -o src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fingerprintformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fingerprintformat.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [216/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfpsformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o -MF src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o.d -o src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fpsformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fpsformat.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fpsformat.cpp: In member function ‘virtual bool OpenBabel::FPSFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fpsformat.cpp:152:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 152 | for(unsigned i=0;i<(_nbits+31)/32;++i) | ~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fpsformat.cpp: In member function ‘std::string OpenBabel::FPSFormat::getTimeStr()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fpsformat.cpp:175:10: warning: variable ‘time_res’ set but not used [-Wunused-but-set-variable=] 175 | size_t time_res; /* Result of strftime */ | ^~~~~~~~ [217/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfreefracformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o -MF src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o.d -o src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/freefracformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/freefracformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [218/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dghemicalformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -MF src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o.d -o src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/ghemicalformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/ghemicalformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [219/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgromos96format_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o -MF src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o.d -o src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gromos96format.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gromos96format.cpp:56: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gromos96format.cpp: In member function ‘OpenBabel::GROMOS96Format::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gromos96format.cpp:144:20: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation] 144 | strncpy(type_name,OBElements::GetSymbol(atom->GetAtomicNum()), 16); | ^ [220/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgroformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/groformat.dir/groformat.cpp.o -MF src/formats/CMakeFiles/groformat.dir/groformat.cpp.o.d -o src/formats/CMakeFiles/groformat.dir/groformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/groformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/groformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [221/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dlmpdatformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -MF src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o.d -o src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/lmpdatformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/lmpdatformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/lmpdatformat.cpp: In member function ‘virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/lmpdatformat.cpp:277:20: warning: unused variable ‘length’ [-Wunused-variable] 277 | double length=cmax-cmin; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/lmpdatformat.cpp:367:25: warning: unused variable ‘atomid’ [-Wunused-variable] 367 | int atomid=5; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/lmpdatformat.cpp:368:28: warning: unused variable ‘charge’ [-Wunused-variable] 368 | double charge=0.5; | ^~~~~~ [222/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dlpmdformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -MF src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o.d -o src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/lpmdformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/lpmdformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/lpmdformat.cpp: In member function ‘virtual bool OpenBabel::LpmdFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/lpmdformat.cpp:196:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 196 | if(int(headers.size()-1)!=tokens.size()) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/lpmdformat.cpp:210:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 210 | for(int i=1 ; i < headers.size() ; ++i) //the first element is HDR | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/lpmdformat.cpp:243:11: warning: unused variable ‘FX’ [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/lpmdformat.cpp:243:32: warning: unused variable ‘FY’ [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/lpmdformat.cpp:243:53: warning: unused variable ‘FZ’ [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/lpmdformat.cpp: In member function ‘virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/lpmdformat.cpp:366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 366 | for(int i=0; i < mol.NumAtoms() ; ++i) | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/lpmdformat.cpp:382:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 382 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 248 | for(int i = 0; i < atom_t_prop.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdffformat.cpp:269:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 269 | for(unsigned int j = 0; j < atom_t_prop[i].num_of_atoms; j++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdffformat.cpp:124:18: warning: variable ‘totalAtoms’ set but not used [-Wunused-but-set-variable=] 124 | unsigned int totalAtoms = 0, atomCount = 0; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdffformat.cpp: In member function ‘bool OpenBabel::aindx::operator<(const OpenBabel::aindx&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdffformat.cpp:328:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 328 | for(int i = 0; i < vs.size(); i++) | ~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdffformat.cpp: In member function ‘virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdffformat.cpp:387:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 387 | for(int i = 0; i < vs.size(); i++) | ~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdffformat.cpp:448:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, unsigned int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 448 | for (int i = 0; i < atypes_def.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdffformat.cpp:455:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, unsigned int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 455 | for (int i = 0; i < atypes_def.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdffformat.cpp:505:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, unsigned int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 505 | for(int j = 0; j < atypes_def.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ [224/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmmodformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o -MF src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o.d -o src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mmodformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mmodformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [225/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmmcifformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -MF src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o.d -o src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mmcifformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mmcifformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [226/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmpdformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o -MF src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o.d -o src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mpdformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mpdformat.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mpdformat.cpp: In member function ‘virtual bool OpenBabel::MPDFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mpdformat.cpp:210:42: warning: variable ‘idx_true’ set but not used [-Wunused-but-set-variable=] 210 | bool xml_true=false, pre_true=false, idx_true=false; | ^~~~~~~~ [227/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmoldenformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o -MF src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o.d -o src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/moldenformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/moldenformat.cpp:38: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [228/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmpqcformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -MF src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o.d -o src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mpqcformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mpqcformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [229/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmsiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o -MF src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o.d -o src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/msiformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/msiformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/msiformat.cpp: In member function ‘virtual bool OpenBabel::MSIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/msiformat.cpp:78:17: warning: unused variable ‘title’ [-Wunused-variable] 78 | const char* title = pConv->GetTitle(); | ^~~~~ [230/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmsmsformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o -MF src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o.d -o src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/msmsformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/msmsformat.cpp:30: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [231/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Doutformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/outformat.dir/outformat.cpp.o -MF src/formats/CMakeFiles/outformat.dir/outformat.cpp.o.d -o src/formats/CMakeFiles/outformat.dir/outformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/outformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/outformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [232/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dopendxformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o -MF src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o.d -o src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/opendxformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/opendxformat.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/opendxformat.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/opendxformat.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ [233/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpcmodelformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -MF src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o.d -o src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pcmodelformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pcmodelformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [234/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpointcloudformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -MF src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o.d -o src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pointcloudformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pointcloudformat.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pointcloudformat.cpp: In member function ‘virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pointcloudformat.cpp:226:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 226 | for( int j = 0; j < radius_mult_list.size(); j++ ) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pointcloudformat.cpp:191:9: warning: variable ‘total_points’ set but not used [-Wunused-but-set-variable=] 191 | int total_points = 0; | ^~~~~~~~~~~~ [235/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dposformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/posformat.dir/posformat.cpp.o -MF src/formats/CMakeFiles/posformat.dir/posformat.cpp.o.d -o src/formats/CMakeFiles/posformat.dir/posformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/posformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/posformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [236/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpdbqtformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -MF src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o.d -o src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obfunctions.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp: In function ‘bool OpenBabel::OutputTree(OBConversion*, OBMol&, std::ostream&, std::map&, unsigned int, bool, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp:587:20: warning: unused variable ‘child’ [-Wunused-variable] 587 | unsigned int child=i; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp: In function ‘bool OpenBabel::Separate_preserve_charges(OBMol&, std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp:803:9: warning: unused variable ‘fragments’ [-Wunused-variable] 803 | int fragments = 0; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp:756:16: warning: ‘unsigned int OpenBabel::AtomsSoFar(const std::map&, unsigned int)’ defined but not used [-Wunused-function] 756 | unsigned int AtomsSoFar(const map & tree, unsigned int depth) | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp: In function ‘OpenBabel::OutputAtom(OpenBabel::OBAtom*, std::basic_ostream >&, unsigned int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp:351:52: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 351 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obmolecformat.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp:24: In function ‘snprintf’, inlined from ‘OpenBabel::OutputAtom(OpenBabel::OBAtom*, std::basic_ostream >&, unsigned int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp:351:15: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp: In function ‘OpenBabel::OutputAtom(OpenBabel::OBAtom*, std::basic_ostream >&, unsigned int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp:369:60: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 369 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^ In function ‘snprintf’, inlined from ‘OpenBabel::OutputAtom(OpenBabel::OBAtom*, std::basic_ostream >&, unsigned int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp:369:19: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp: In member function ‘OpenBabel::PDBQTFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbqtformat.cpp:968:22: warning: ‘strncpy’ specified bound 10 equals destination size [-Wstringop-truncation] 968 | strncpy(type_name, OBElements::GetSymbol(rotBondTable[rotBondId][bondAtomNum]->GetAtomicNum()), sizeof(type_name)); | ^ [237/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpqrformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o -MF src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o.d -o src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pqrformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pqrformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pqrformat.cpp: In function ‘double OpenBabel::parseAtomCharge(char*, OBMol&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pqrformat.cpp:203:13: warning: unused variable ‘atom’ [-Wunused-variable] 203 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pqrformat.cpp: In function ‘double OpenBabel::parseAtomRadius(char*, OBMol&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pqrformat.cpp:218:13: warning: unused variable ‘atom’ [-Wunused-variable] 218 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pqrformat.cpp: In member function ‘OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pqrformat.cpp:507:58: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 507 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obmolecformat.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pqrformat.cpp:16: In function ‘snprintf’, inlined from ‘OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pqrformat.cpp:507:21: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pqrformat.cpp: In member function ‘OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pqrformat.cpp:524:66: warning: ‘%-3s’ directive output may be truncated writing between 3 and 15 bytes into a region of size 9 [-Wformat-truncation=] 524 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^~~~ ~~~ In function ‘snprintf’, inlined from ‘OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pqrformat.cpp:524:29: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 5 and 17 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [238/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Drinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -MF src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o.d -o src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/rinchiformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/rinchiformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [239/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWORDS_BIGENDIAN=1 -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Drxnformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o -MF src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o.d -o src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/rxnformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/rxnformat.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/rxnformat.cpp: In member function ‘virtual bool OpenBabel::RXNFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/rxnformat.cpp:196:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 196 | for (int i=0; i