Mock Version: 1.2.15 ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/perl-Bio-Phylo.spec'], user='mockbuild'gid=135timeout=0env={'TERM': 'vt100', 'LANG': 'en_US.UTF-8', 'HOSTNAME': 'mock', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'SHELL': '/bin/bash'}printOutput=Falseuid=1001chrootPath='/var/lib/mock/epel-6-x86_64-mockbuilder-2553/root'logger=shell=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/perl-Bio-Phylo.spec'] with env {'TERM': 'vt100', 'LANG': 'en_US.UTF-8', 'HOSTNAME': 'mock', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'SHELL': '/bin/bash'} and shell False warning: Could not canonicalize hostname: copr-builder-601459892.novalocal Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/perl-Bio-Phylo-0.58-1.el6.src.rpm Child return code was: 0 LEAVE do --> ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/perl-Bio-Phylo.spec '], user='mockbuild'private_network=Truegid=135timeout=0env={'TERM': 'vt100', 'LANG': 'en_US.UTF-8', 'HOSTNAME': 'mock', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'SHELL': '/bin/bash'}printOutput=Falseuid=1001chrootPath='/var/lib/mock/epel-6-x86_64-mockbuilder-2553/root'logger=shell=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/perl-Bio-Phylo.spec '] with env {'TERM': 'vt100', 'LANG': 'en_US.UTF-8', 'HOSTNAME': 'mock', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'SHELL': '/bin/bash'} and shell False Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.zoiRHG + umask 022 + cd /builddir/build/BUILD + LANG=C + export LANG + unset DISPLAY + cd /builddir/build/BUILD + rm -rf Bio-Phylo-0.58 + /usr/bin/gzip -dc /builddir/build/SOURCES/Bio-Phylo-0.58.tar.gz + /bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd Bio-Phylo-0.58 + /bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #1 (perl-Bio-Phylo-rec.patch):' Patch #1 (perl-Bio-Phylo-rec.patch): + /bin/cat /builddir/build/SOURCES/perl-Bio-Phylo-rec.patch + /usr/bin/patch -p1 --fuzz=0 patching file Makefile.PL + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.fMC0p7 + umask 022 + cd /builddir/build/BUILD + cd Bio-Phylo-0.58 + LANG=C + export LANG + unset DISPLAY + /usr/bin/perl Makefile.PL INSTALLDIRS=vendor *** The optional dependency "XML::XML2JSON" can't be loaded. I will continue, but some functionality will not be available. Refer to the Bio::Phylo README file for more information. *** The optional dependency "SWF::Builder" can't be loaded. I will continue, but some functionality will not be available. Refer to the Bio::Phylo README file for more information. *** The optional dependency "PDF::API2" can't be loaded. I will continue, but some functionality will not be available. Refer to the Bio::Phylo README file for more information. Checking if your kit is complete... Looks good Writing Makefile for Bio::Phylo + make -j2 cp lib/Bio/Phylo/Unparsers/Hennig86.pm blib/lib/Bio/Phylo/Unparsers/Hennig86.pm cp lib/Bio/Phylo/Parsers/Json.pm blib/lib/Bio/Phylo/Parsers/Json.pm cp lib/Bio/Phylo/Parsers/Abstract.pm blib/lib/Bio/Phylo/Parsers/Abstract.pm cp lib/Bio/Phylo/ListableRole.pm blib/lib/Bio/Phylo/ListableRole.pm cp lib/Bio/Phylo/Models/Substitution/Dna/K80.pm blib/lib/Bio/Phylo/Models/Substitution/Dna/K80.pm cp lib/Bio/Phylo/Forest/Node.pm blib/lib/Bio/Phylo/Forest/Node.pm cp lib/Bio/Phylo/Unparsers/Phyloxml.pm blib/lib/Bio/Phylo/Unparsers/Phyloxml.pm cp lib/Bio/Phylo/Unparsers/Taxlist.pm blib/lib/Bio/Phylo/Unparsers/Taxlist.pm cp lib/Bio/Phylo/NeXML/DOM/Document/Libxml.pm blib/lib/Bio/Phylo/NeXML/DOM/Document/Libxml.pm cp lib/Bio/Phylo/Util/IDPool.pm blib/lib/Bio/Phylo/Util/IDPool.pm cp lib/Bio/Phylo/Taxa/Taxon.pm blib/lib/Bio/Phylo/Taxa/Taxon.pm cp lib/Bio/Phylo/PhyloWS/Service/UbioClassificationBank.pm blib/lib/Bio/Phylo/PhyloWS/Service/UbioClassificationBank.pm cp lib/Bio/Phylo/Taxa.pm blib/lib/Bio/Phylo/Taxa.pm cp lib/Bio/Phylo/Unparsers/Json.pm blib/lib/Bio/Phylo/Unparsers/Json.pm cp lib/Bio/Phylo/Unparsers/Mrp.pm blib/lib/Bio/Phylo/Unparsers/Mrp.pm cp lib/Bio/Phylo/EvolutionaryModels.pm blib/lib/Bio/Phylo/EvolutionaryModels.pm cp lib/Bio/Phylo/Parsers/Phylip.pm blib/lib/Bio/Phylo/Parsers/Phylip.pm cp lib/Bio/Phylo/IO.pm blib/lib/Bio/Phylo/IO.pm cp lib/Bio/Phylo/Treedrawer/Canvas.pm blib/lib/Bio/Phylo/Treedrawer/Canvas.pm cp lib/Bio/Phylo/Forest/TreeRole.pm blib/lib/Bio/Phylo/Forest/TreeRole.pm cp lib/Bio/Phylo/Matrices/Datatype/Standard.pm blib/lib/Bio/Phylo/Matrices/Datatype/Standard.pm cp lib/Bio/Phylo/Util/Exceptions.pm blib/lib/Bio/Phylo/Util/Exceptions.pm cp lib/Bio/Phylo/Util/CONSTANT.pm blib/lib/Bio/Phylo/Util/CONSTANT.pm cp lib/Bio/Phylo/PhyloWS/Client.pm blib/lib/Bio/Phylo/PhyloWS/Client.pm cp lib/Bio/Phylo/Parsers/Phyloxml.pm blib/lib/Bio/Phylo/Parsers/Phyloxml.pm cp lib/Bio/Phylo/Unparsers/Fasta.pm blib/lib/Bio/Phylo/Unparsers/Fasta.pm cp lib/Bio/Phylo/Unparsers/Nexml.pm blib/lib/Bio/Phylo/Unparsers/Nexml.pm cp lib/Bio/Phylo/Taxa/TaxaLinker.pm blib/lib/Bio/Phylo/Taxa/TaxaLinker.pm cp lib/Bio/Phylo/Parsers/Table.pm blib/lib/Bio/Phylo/Parsers/Table.pm cp lib/Bio/Phylo/Matrices/Matrix.pm blib/lib/Bio/Phylo/Matrices/Matrix.pm cp lib/Bio/Phylo/Models/Substitution/Dna/GTR.pm blib/lib/Bio/Phylo/Models/Substitution/Dna/GTR.pm cp lib/Bio/Phylo/Matrices/DatumRole.pm blib/lib/Bio/Phylo/Matrices/DatumRole.pm cp lib/Bio/Phylo/Unparsers/Html.pm blib/lib/Bio/Phylo/Unparsers/Html.pm cp lib/Bio/Phylo/Treedrawer/Pdf.pm blib/lib/Bio/Phylo/Treedrawer/Pdf.pm cp lib/Bio/Phylo/Listable.pm blib/lib/Bio/Phylo/Listable.pm cp lib/Bio/Phylo/Unparsers/Abstract.pm blib/lib/Bio/Phylo/Unparsers/Abstract.pm cp lib/Bio/Phylo/NeXML/DOM/Element/Twig.pm blib/lib/Bio/Phylo/NeXML/DOM/Element/Twig.pm cp lib/Bio/Phylo/Forest.pm blib/lib/Bio/Phylo/Forest.pm cp lib/Bio/Phylo/NeXML/DOM/Document/Twig.pm blib/lib/Bio/Phylo/NeXML/DOM/Document/Twig.pm cp lib/Bio/Phylo/Models/Substitution/Dna/HKY85.pm blib/lib/Bio/Phylo/Models/Substitution/Dna/HKY85.pm cp lib/Bio/Phylo/Parsers/Nexus.pm blib/lib/Bio/Phylo/Parsers/Nexus.pm cp lib/Bio/Phylo/Matrices/Characters.pm blib/lib/Bio/Phylo/Matrices/Characters.pm cp lib/Bio/Phylo/Matrices/MatrixRole.pm blib/lib/Bio/Phylo/Matrices/MatrixRole.pm cp lib/Bio/Phylo/Generator.pm blib/lib/Bio/Phylo/Generator.pm cp lib/Bio/Phylo/NeXML/Entities.pm blib/lib/Bio/Phylo/NeXML/Entities.pm cp lib/Bio/Phylo/Matrices/Datatype.pm blib/lib/Bio/Phylo/Matrices/Datatype.pm cp lib/Bio/Phylo/Treedrawer/Svg.pm blib/lib/Bio/Phylo/Treedrawer/Svg.pm cp lib/Bio/Phylo/NeXML/DOM/Document.pm blib/lib/Bio/Phylo/NeXML/DOM/Document.pm cp lib/Bio/Phylo/Matrices/Datatype/Dna.pm blib/lib/Bio/Phylo/Matrices/Datatype/Dna.pm cp lib/Bio/Phylo/Parsers/Tolweb.pm blib/lib/Bio/Phylo/Parsers/Tolweb.pm cp lib/Bio/Phylo/Treedrawer.pm blib/lib/Bio/Phylo/Treedrawer.pm cp lib/Bio/Phylo/Util/StackTrace.pm blib/lib/Bio/Phylo/Util/StackTrace.pm cp lib/Bio/Phylo.pm blib/lib/Bio/Phylo.pm cp lib/Bio/Phylo/Forest/Tree.pm blib/lib/Bio/Phylo/Forest/Tree.pm cp lib/Bio/Phylo/Matrices/Datatype/Sanger.pm blib/lib/Bio/Phylo/Matrices/Datatype/Sanger.pm cp lib/Bio/Phylo/Unparsers/Nexus.pm blib/lib/Bio/Phylo/Unparsers/Nexus.pm cp lib/Bio/Phylo/Treedrawer/Processing.pm blib/lib/Bio/Phylo/Treedrawer/Processing.pm cp lib/Bio/Phylo/Matrices/Datatype/Custom.pm blib/lib/Bio/Phylo/Matrices/Datatype/Custom.pm cp lib/Bio/Phylo/PhyloWS/Service/Tolweb.pm blib/lib/Bio/Phylo/PhyloWS/Service/Tolweb.pm cp lib/Bio/Phylo/Identifiable.pm blib/lib/Bio/Phylo/Identifiable.pm cp lib/Bio/Phylo/Matrices/Character.pm blib/lib/Bio/Phylo/Matrices/Character.pm cp lib/Bio/Phylo/Matrices/Datatype/Mixed.pm blib/lib/Bio/Phylo/Matrices/Datatype/Mixed.pm cp lib/Bio/Phylo/PhyloWS/Service.pm blib/lib/Bio/Phylo/PhyloWS/Service.pm cp lib/Bio/Phylo/Forest/DrawNodeRole.pm blib/lib/Bio/Phylo/Forest/DrawNodeRole.pm cp lib/Bio/Phylo/Matrices/Datatype/Rna.pm blib/lib/Bio/Phylo/Matrices/Datatype/Rna.pm cp lib/Bio/Phylo/Parsers/Ubiometa.pm blib/lib/Bio/Phylo/Parsers/Ubiometa.pm cp lib/Bio/Phylo/Util/MOP.pm blib/lib/Bio/Phylo/Util/MOP.pm cp lib/Bio/Phylo/PhyloWS/Resource/Description.pm blib/lib/Bio/Phylo/PhyloWS/Resource/Description.pm cp lib/Bio/Phylo/Util/Logger.pm blib/lib/Bio/Phylo/Util/Logger.pm cp lib/Bio/Phylo/Unparsers/Rss1.pm blib/lib/Bio/Phylo/Unparsers/Rss1.pm cp lib/Bio/Phylo/Util/OptionalInterface.pm blib/lib/Bio/Phylo/Util/OptionalInterface.pm cp lib/Bio/Phylo/Matrices.pm blib/lib/Bio/Phylo/Matrices.pm cp lib/Bio/Phylo/Matrices/TypeSafeData.pm blib/lib/Bio/Phylo/Matrices/TypeSafeData.pm cp lib/Bio/Phylo/Treedrawer/Swf.pm blib/lib/Bio/Phylo/Treedrawer/Swf.pm cp lib/Bio/Phylo/NeXML/DOM.pm blib/lib/Bio/Phylo/NeXML/DOM.pm cp lib/Bio/Phylo/Project.pm blib/lib/Bio/Phylo/Project.pm cp lib/Bio/Phylo/Parsers/Figtree.pm blib/lib/Bio/Phylo/Parsers/Figtree.pm cp lib/Bio/Phylo/Matrices/Datatype/Protein.pm blib/lib/Bio/Phylo/Matrices/Datatype/Protein.pm cp lib/Bio/Phylo/Parsers/Fasta.pm blib/lib/Bio/Phylo/Parsers/Fasta.pm cp lib/Bio/Phylo/Manual.pod blib/lib/Bio/Phylo/Manual.pod cp lib/Bio/Phylo/Parsers/Fastq.pm blib/lib/Bio/Phylo/Parsers/Fastq.pm cp lib/Bio/Phylo/Models/Substitution/Dna.pm blib/lib/Bio/Phylo/Models/Substitution/Dna.pm cp lib/Bio/Phylo/Unparsers/Cdao.pm blib/lib/Bio/Phylo/Unparsers/Cdao.pm cp lib/Bio/Phylo/Treedrawer/Png.pm blib/lib/Bio/Phylo/Treedrawer/Png.pm cp lib/Bio/Phylo/Parsers/Newick.pm blib/lib/Bio/Phylo/Parsers/Newick.pm cp lib/Bio/Phylo/Parsers/Ubiocbmeta.pm blib/lib/Bio/Phylo/Parsers/Ubiocbmeta.pm cp lib/Bio/Phylo/Set.pm blib/lib/Bio/Phylo/Set.pm cp lib/Bio/Phylo/Unparsers/Phylip.pm blib/lib/Bio/Phylo/Unparsers/Phylip.pm cp lib/Bio/Phylo/Matrices/Datatype/Restriction.pm blib/lib/Bio/Phylo/Matrices/Datatype/Restriction.pm cp lib/Bio/Phylo/Treedrawer/Gif.pm blib/lib/Bio/Phylo/Treedrawer/Gif.pm cp lib/Bio/Phylo/NeXML/Writable.pm blib/lib/Bio/Phylo/NeXML/Writable.pm cp lib/Bio/Phylo/NeXML/Meta.pm blib/lib/Bio/Phylo/NeXML/Meta.pm cp lib/Bio/Phylo/Forest/DrawTreeRole.pm blib/lib/Bio/Phylo/Forest/DrawTreeRole.pm cp lib/Bio/Phylo/Parsers/Nexml.pm blib/lib/Bio/Phylo/Parsers/Nexml.pm cp lib/Bio/Phylo/PhyloWS.pm blib/lib/Bio/Phylo/PhyloWS.pm cp lib/Bio/Phylo/Util/CONSTANT/Int.pm blib/lib/Bio/Phylo/Util/CONSTANT/Int.pm cp lib/Bio/Phylo/Parsers/Ubiosearch.pm blib/lib/Bio/Phylo/Parsers/Ubiosearch.pm cp lib/Bio/Phylo/Util/Dependency.pm blib/lib/Bio/Phylo/Util/Dependency.pm cp lib/Bio/Phylo/Parsers/Taxlist.pm blib/lib/Bio/Phylo/Parsers/Taxlist.pm cp lib/Bio/Phylo/Matrices/Datatype/Illumina.pm blib/lib/Bio/Phylo/Matrices/Datatype/Illumina.pm cp lib/Bio/Phylo/Forest/NodeRole.pm blib/lib/Bio/Phylo/Forest/NodeRole.pm cp lib/Bio/Phylo/Treedrawer/Jpeg.pm blib/lib/Bio/Phylo/Treedrawer/Jpeg.pm cp lib/Bio/Phylo/Treedrawer/Abstract.pm blib/lib/Bio/Phylo/Treedrawer/Abstract.pm cp lib/Bio/Phylo/Unparsers/Newick.pm blib/lib/Bio/Phylo/Unparsers/Newick.pm cp lib/Bio/Phylo/Matrices/Datum.pm blib/lib/Bio/Phylo/Matrices/Datum.pm cp lib/Bio/Phylo/Models/Substitution/Dna/F81.pm blib/lib/Bio/Phylo/Models/Substitution/Dna/F81.pm cp lib/Bio/Phylo/Parsers/Tnrs.pm blib/lib/Bio/Phylo/Parsers/Tnrs.pm cp lib/Bio/Phylo/Taxa/TaxonLinker.pm blib/lib/Bio/Phylo/Taxa/TaxonLinker.pm cp lib/Bio/Phylo/Matrices/Datatype/Solexa.pm blib/lib/Bio/Phylo/Matrices/Datatype/Solexa.pm cp lib/Bio/Phylo/NeXML/DOM/Element/Libxml.pm blib/lib/Bio/Phylo/NeXML/DOM/Element/Libxml.pm cp lib/Bio/Phylo/Unparsers/Adjacency.pm blib/lib/Bio/Phylo/Unparsers/Adjacency.pm cp lib/Bio/Phylo/Unparsers/Nwmsrdf.pm blib/lib/Bio/Phylo/Unparsers/Nwmsrdf.pm cp lib/Bio/Phylo/Mediators/TaxaMediator.pm blib/lib/Bio/Phylo/Mediators/TaxaMediator.pm cp lib/Bio/Phylo/NeXML/DOM/Element.pm blib/lib/Bio/Phylo/NeXML/DOM/Element.pm cp lib/Bio/Phylo/Models/Substitution/Dna/JC69.pm blib/lib/Bio/Phylo/Models/Substitution/Dna/JC69.pm cp lib/Bio/Phylo/NeXML/Meta/XMLLiteral.pm blib/lib/Bio/Phylo/NeXML/Meta/XMLLiteral.pm cp lib/Bio/Phylo/PhyloWS/Resource.pm blib/lib/Bio/Phylo/PhyloWS/Resource.pm cp lib/Bio/Phylo/PhyloWS/Service/UbioNameBank.pm blib/lib/Bio/Phylo/PhyloWS/Service/UbioNameBank.pm cp lib/Bio/Phylo/Parsers/Adjacency.pm blib/lib/Bio/Phylo/Parsers/Adjacency.pm cp lib/Bio/Phylo/Unparsers/Pagel.pm blib/lib/Bio/Phylo/Unparsers/Pagel.pm cp lib/Bio/PhyloRole.pm blib/lib/Bio/PhyloRole.pm cp lib/Bio/Phylo/PhyloWS/Service/Timetree.pm blib/lib/Bio/Phylo/PhyloWS/Service/Timetree.pm cp lib/Bio/Phylo/Matrices/Datatype/Continuous.pm blib/lib/Bio/Phylo/Matrices/Datatype/Continuous.pm cp lib/Bio/Phylo/Factory.pm blib/lib/Bio/Phylo/Factory.pm Manifying blib/man3/Bio::Phylo::Parsers::Json.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Hennig86.3pm Manifying blib/man3/Bio::Phylo::Parsers::Abstract.3pm Manifying blib/man3/Bio::Phylo::ListableRole.3pm Manifying blib/man3/Bio::Phylo::Forest::Node.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Phyloxml.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Taxlist.3pm Manifying blib/man3/Bio::Phylo::NeXML::DOM::Document::Libxml.3pm Manifying blib/man3/Bio::Phylo::Taxa::Taxon.3pm Manifying blib/man3/Bio::Phylo::Util::IDPool.3pm Manifying blib/man3/Bio::Phylo::PhyloWS::Service::UbioClassificationBank.3pm Manifying blib/man3/Bio::Phylo::Taxa.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Json.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Mrp.3pm Manifying blib/man3/Bio::Phylo::EvolutionaryModels.3pm Manifying blib/man3/Bio::Phylo::Parsers::Phylip.3pm Manifying blib/man3/Bio::Phylo::IO.3pm Manifying blib/man3/Bio::Phylo::Forest::TreeRole.3pm Manifying blib/man3/Bio::Phylo::Treedrawer::Canvas.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Standard.3pm Manifying blib/man3/Bio::Phylo::Parsers::Phyloxml.3pm Manifying blib/man3/Bio::Phylo::PhyloWS::Client.3pm Manifying blib/man3/Bio::Phylo::Util::CONSTANT.3pm Manifying blib/man3/Bio::Phylo::Util::Exceptions.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Fasta.3pm Manifying blib/man3/Bio::Phylo::Matrices::Matrix.3pm Manifying blib/man3/Bio::Phylo::Parsers::Table.3pm Manifying blib/man3/Bio::Phylo::Taxa::TaxaLinker.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Nexml.3pm Manifying blib/man3/Bio::Phylo::Matrices::DatumRole.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Html.3pm Manifying blib/man3/Bio::Phylo::Treedrawer::Pdf.3pm Manifying blib/man3/Bio::Phylo::Listable.3pm Manifying blib/man3/Bio::Phylo::Matrices::Characters.3pm Manifying blib/man3/Bio::Phylo::Matrices::MatrixRole.3pm Manifying blib/man3/Bio::Phylo::Generator.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype.3pm Manifying blib/man3/Bio::Phylo::NeXML::Entities.3pm Manifying blib/man3/Bio::Phylo::Treedrawer::Svg.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Dna.3pm Manifying blib/man3/Bio::Phylo::NeXML::DOM::Document.3pm Manifying blib/man3/Bio::Phylo::Parsers::Tolweb.3pm Manifying blib/man3/Bio::Phylo::Treedrawer.3pm Manifying blib/man3/Bio::Phylo::Util::StackTrace.3pm Manifying blib/man3/Bio::Phylo::Forest::Tree.3pm Manifying blib/man3/Bio::Phylo.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Sanger.3pm Manifying blib/man3/Bio::Phylo::Treedrawer::Processing.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Nexus.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Custom.3pm Manifying blib/man3/Bio::Phylo::PhyloWS::Service::Tolweb.3pm Manifying blib/man3/Bio::Phylo::Identifiable.3pm Manifying blib/man3/Bio::Phylo::Matrices::Character.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Mixed.3pm Manifying blib/man3/Bio::Phylo::PhyloWS::Service.3pm Manifying blib/man3/Bio::Phylo::Forest::DrawNodeRole.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Rna.3pm Manifying blib/man3/Bio::Phylo::Parsers::Ubiometa.3pm Manifying blib/man3/Bio::Phylo::Util::MOP.3pm Manifying blib/man3/Bio::Phylo::PhyloWS::Resource::Description.3pm Manifying blib/man3/Bio::Phylo::Util::Logger.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Rss1.3pm Manifying blib/man3/Bio::Phylo::NeXML::DOM::Element::Twig.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Abstract.3pm Manifying blib/man3/Bio::Phylo::Forest.3pm Manifying blib/man3/Bio::Phylo::NeXML::DOM::Document::Twig.3pm Manifying blib/man3/Bio::Phylo::Parsers::Nexus.3pm Manifying blib/man3/Bio::Phylo::Util::OptionalInterface.3pm Manifying blib/man3/Bio::Phylo::Matrices::TypeSafeData.3pm Manifying blib/man3/Bio::Phylo::Matrices.3pm Manifying blib/man3/Bio::Phylo::Treedrawer::Swf.3pm Manifying blib/man3/Bio::Phylo::NeXML::DOM.3pm Manifying blib/man3/Bio::Phylo::Project.3pm Manifying blib/man3/Bio::Phylo::Parsers::Figtree.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Protein.3pm Manifying blib/man3/Bio::Phylo::Parsers::Fasta.3pm Manifying blib/man3/Bio::Phylo::Manual.3pm Manifying blib/man3/Bio::Phylo::Parsers::Fastq.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Cdao.3pm Manifying blib/man3/Bio::Phylo::Treedrawer::Png.3pm Manifying blib/man3/Bio::Phylo::Parsers::Newick.3pm Manifying blib/man3/Bio::Phylo::Parsers::Ubiocbmeta.3pm Manifying blib/man3/Bio::Phylo::Set.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Phylip.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Restriction.3pm Manifying blib/man3/Bio::Phylo::NeXML::Meta.3pm Manifying blib/man3/Bio::Phylo::NeXML::Writable.3pm Manifying blib/man3/Bio::Phylo::Treedrawer::Gif.3pm Manifying blib/man3/Bio::Phylo::Forest::DrawTreeRole.3pm Manifying blib/man3/Bio::Phylo::Parsers::Nexml.3pm Manifying blib/man3/Bio::Phylo::PhyloWS.3pm Manifying blib/man3/Bio::Phylo::Util::CONSTANT::Int.3pm Manifying blib/man3/Bio::Phylo::Parsers::Ubiosearch.3pm Manifying blib/man3/Bio::Phylo::Util::Dependency.3pm Manifying blib/man3/Bio::Phylo::Parsers::Taxlist.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Illumina.3pm Manifying blib/man3/Bio::Phylo::Forest::NodeRole.3pm Manifying blib/man3/Bio::Phylo::Treedrawer::Jpeg.3pm Manifying blib/man3/Bio::Phylo::Treedrawer::Abstract.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Newick.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datum.3pm Manifying blib/man3/Bio::Phylo::Parsers::Tnrs.3pm Manifying blib/man3/Bio::Phylo::Taxa::TaxonLinker.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Solexa.3pm Manifying blib/man3/Bio::Phylo::NeXML::DOM::Element::Libxml.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Adjacency.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Nwmsrdf.3pm Manifying blib/man3/Bio::Phylo::Mediators::TaxaMediator.3pm Manifying blib/man3/Bio::Phylo::NeXML::DOM::Element.3pm Manifying blib/man3/Bio::Phylo::NeXML::Meta::XMLLiteral.3pm Manifying blib/man3/Bio::Phylo::PhyloWS::Resource.3pm Manifying blib/man3/Bio::Phylo::PhyloWS::Service::UbioNameBank.3pm Manifying blib/man3/Bio::Phylo::Parsers::Adjacency.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Pagel.3pm Manifying blib/man3/Bio::PhyloRole.3pm Manifying blib/man3/Bio::Phylo::PhyloWS::Service::Timetree.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Continuous.3pm Manifying blib/man3/Bio::Phylo::Factory.3pm + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.TjJfRD + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64 ++ dirname /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64 + cd Bio-Phylo-0.58 + LANG=C + export LANG + unset DISPLAY + rm -rf /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64 + make pure_install PERL_INSTALL_ROOT=/builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64 Manifying blib/man3/Bio::Phylo::Parsers::Json.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Hennig86.3pm Manifying blib/man3/Bio::Phylo::Parsers::Abstract.3pm Manifying blib/man3/Bio::Phylo::ListableRole.3pm Manifying blib/man3/Bio::Phylo::Forest::Node.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Phyloxml.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Taxlist.3pm Manifying blib/man3/Bio::Phylo::NeXML::DOM::Document::Libxml.3pm Manifying blib/man3/Bio::Phylo::Taxa::Taxon.3pm Manifying blib/man3/Bio::Phylo::Util::IDPool.3pm Manifying blib/man3/Bio::Phylo::PhyloWS::Service::UbioClassificationBank.3pm Manifying blib/man3/Bio::Phylo::Taxa.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Json.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Mrp.3pm Manifying blib/man3/Bio::Phylo::EvolutionaryModels.3pm Manifying blib/man3/Bio::Phylo::Parsers::Phylip.3pm Manifying blib/man3/Bio::Phylo::IO.3pm Manifying blib/man3/Bio::Phylo::Forest::TreeRole.3pm Manifying blib/man3/Bio::Phylo::Treedrawer::Canvas.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Standard.3pm Manifying blib/man3/Bio::Phylo::Parsers::Phyloxml.3pm Manifying blib/man3/Bio::Phylo::PhyloWS::Client.3pm Manifying blib/man3/Bio::Phylo::Util::CONSTANT.3pm Manifying blib/man3/Bio::Phylo::Util::Exceptions.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Fasta.3pm Manifying blib/man3/Bio::Phylo::Matrices::Matrix.3pm Manifying blib/man3/Bio::Phylo::Parsers::Table.3pm Manifying blib/man3/Bio::Phylo::Taxa::TaxaLinker.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Nexml.3pm Manifying blib/man3/Bio::Phylo::Matrices::DatumRole.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Html.3pm Manifying blib/man3/Bio::Phylo::Treedrawer::Pdf.3pm Manifying blib/man3/Bio::Phylo::Listable.3pm Manifying blib/man3/Bio::Phylo::Matrices::Characters.3pm Manifying blib/man3/Bio::Phylo::Matrices::MatrixRole.3pm Manifying blib/man3/Bio::Phylo::Generator.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype.3pm Manifying blib/man3/Bio::Phylo::NeXML::Entities.3pm Manifying blib/man3/Bio::Phylo::Treedrawer::Svg.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Dna.3pm Manifying blib/man3/Bio::Phylo::NeXML::DOM::Document.3pm Manifying blib/man3/Bio::Phylo::Parsers::Tolweb.3pm Manifying blib/man3/Bio::Phylo::Treedrawer.3pm Manifying blib/man3/Bio::Phylo::Util::StackTrace.3pm Manifying blib/man3/Bio::Phylo::Forest::Tree.3pm Manifying blib/man3/Bio::Phylo.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Sanger.3pm Manifying blib/man3/Bio::Phylo::Treedrawer::Processing.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Nexus.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Custom.3pm Manifying blib/man3/Bio::Phylo::PhyloWS::Service::Tolweb.3pm Manifying blib/man3/Bio::Phylo::Identifiable.3pm Manifying blib/man3/Bio::Phylo::Matrices::Character.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Mixed.3pm Manifying blib/man3/Bio::Phylo::PhyloWS::Service.3pm Manifying blib/man3/Bio::Phylo::Forest::DrawNodeRole.3pm Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Rna.3pm Manifying blib/man3/Bio::Phylo::Parsers::Ubiometa.3pm Manifying blib/man3/Bio::Phylo::Util::MOP.3pm Manifying blib/man3/Bio::Phylo::PhyloWS::Resource::Description.3pm Manifying blib/man3/Bio::Phylo::Util::Logger.3pm Manifying blib/man3/Bio::Phylo::Unparsers::Rss1.3pm Manifying blib/man3/Bio::Phylo::NeXML::DOM::Element::Twig.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/PhyloRole.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Factory.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/PhyloWS.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Set.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Manual.pod Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Project.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Identifiable.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Treedrawer.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Generator.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Forest.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Listable.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/IO.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/EvolutionaryModels.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Taxa.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/ListableRole.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Mediators/TaxaMediator.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/Datum.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/TypeSafeData.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/Character.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/Datatype.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/MatrixRole.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/Characters.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/DatumRole.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/Matrix.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/Datatype/Continuous.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/Datatype/Solexa.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/Datatype/Illumina.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/Datatype/Restriction.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/Datatype/Protein.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/Datatype/Rna.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/Datatype/Mixed.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/Datatype/Custom.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/Datatype/Sanger.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/Datatype/Dna.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Matrices/Datatype/Standard.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Treedrawer/Abstract.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Treedrawer/Jpeg.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Treedrawer/Gif.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Treedrawer/Png.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Treedrawer/Swf.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Treedrawer/Processing.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Treedrawer/Svg.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Treedrawer/Pdf.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Treedrawer/Canvas.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/PhyloWS/Resource.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/PhyloWS/Service.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/PhyloWS/Client.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/PhyloWS/Resource/Description.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/PhyloWS/Service/Timetree.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/PhyloWS/Service/UbioNameBank.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/PhyloWS/Service/Tolweb.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/PhyloWS/Service/UbioClassificationBank.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Taxa/TaxonLinker.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Taxa/TaxaLinker.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Taxa/Taxon.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Util/Dependency.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Util/OptionalInterface.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Util/Logger.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Util/MOP.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Util/StackTrace.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Util/CONSTANT.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Util/Exceptions.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Util/IDPool.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Util/CONSTANT/Int.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/NeXML/Meta.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/NeXML/Writable.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/NeXML/DOM.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/NeXML/Entities.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/NeXML/Meta/XMLLiteral.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/NeXML/DOM/Element.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/NeXML/DOM/Document.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/NeXML/DOM/Element/Libxml.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/NeXML/DOM/Element/Twig.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/NeXML/DOM/Document/Twig.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/NeXML/DOM/Document/Libxml.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Forest/NodeRole.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Forest/DrawTreeRole.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Forest/DrawNodeRole.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Forest/Tree.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Forest/TreeRole.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Forest/Node.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Models/Substitution/Dna.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Models/Substitution/Dna/JC69.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Models/Substitution/Dna/F81.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Models/Substitution/Dna/HKY85.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Models/Substitution/Dna/GTR.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Models/Substitution/Dna/K80.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Adjacency.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Tnrs.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Taxlist.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Ubiosearch.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Nexml.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Ubiocbmeta.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Newick.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Fastq.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Fasta.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Figtree.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Ubiometa.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Tolweb.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Nexus.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Table.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Phyloxml.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Phylip.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Abstract.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Parsers/Json.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Unparsers/Pagel.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Unparsers/Nwmsrdf.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Unparsers/Adjacency.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Unparsers/Newick.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Unparsers/Phylip.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Unparsers/Cdao.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Unparsers/Rss1.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Unparsers/Nexus.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Unparsers/Abstract.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Unparsers/Html.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Unparsers/Nexml.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Unparsers/Fasta.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Unparsers/Mrp.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Unparsers/Json.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Unparsers/Taxlist.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Unparsers/Phyloxml.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/perl5/vendor_perl/Bio/Phylo/Unparsers/Hennig86.pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Factory.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::Datatype::Continuous.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::PhyloWS::Service::Timetree.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::PhyloRole.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Unparsers::Pagel.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Adjacency.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::PhyloWS::Service::UbioNameBank.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::PhyloWS::Resource.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::NeXML::Meta::XMLLiteral.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::NeXML::DOM::Element.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Mediators::TaxaMediator.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Unparsers::Nwmsrdf.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Unparsers::Adjacency.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::NeXML::DOM::Element::Libxml.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::Datatype::Solexa.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Taxa::TaxonLinker.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Tnrs.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::Datum.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Unparsers::Newick.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Treedrawer::Abstract.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Treedrawer::Jpeg.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Forest::NodeRole.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::Datatype::Illumina.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Taxlist.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Util::Dependency.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Ubiosearch.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Util::CONSTANT::Int.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::PhyloWS.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Nexml.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Forest::DrawTreeRole.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Treedrawer::Gif.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::NeXML::Writable.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::NeXML::Meta.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::Datatype::Restriction.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Unparsers::Phylip.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Set.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Ubiocbmeta.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Newick.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Treedrawer::Png.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Unparsers::Cdao.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Fastq.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Manual.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Fasta.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::Datatype::Protein.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Figtree.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Project.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::NeXML::DOM.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Treedrawer::Swf.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::TypeSafeData.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Util::OptionalInterface.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Nexus.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::NeXML::DOM::Document::Twig.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Forest.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Unparsers::Abstract.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::NeXML::DOM::Element::Twig.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Unparsers::Rss1.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Util::Logger.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::PhyloWS::Resource::Description.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Util::MOP.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Ubiometa.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::Datatype::Rna.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Forest::DrawNodeRole.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::PhyloWS::Service.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::Datatype::Mixed.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::Character.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Identifiable.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::PhyloWS::Service::Tolweb.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::Datatype::Custom.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Unparsers::Nexus.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Treedrawer::Processing.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::Datatype::Sanger.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Forest::Tree.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Util::StackTrace.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Treedrawer.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Tolweb.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::NeXML::DOM::Document.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::Datatype::Dna.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Treedrawer::Svg.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::NeXML::Entities.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::Datatype.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Generator.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::MatrixRole.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::Characters.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Listable.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Treedrawer::Pdf.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Unparsers::Html.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::DatumRole.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Unparsers::Nexml.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Taxa::TaxaLinker.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Table.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::Matrix.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Unparsers::Fasta.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Util::Exceptions.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Util::CONSTANT.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::PhyloWS::Client.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Phyloxml.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Matrices::Datatype::Standard.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Treedrawer::Canvas.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Forest::TreeRole.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::IO.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Phylip.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::EvolutionaryModels.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Unparsers::Mrp.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Unparsers::Json.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Taxa.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::PhyloWS::Service::UbioClassificationBank.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Util::IDPool.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Taxa::Taxon.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::NeXML::DOM::Document::Libxml.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Unparsers::Taxlist.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Unparsers::Phyloxml.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Forest::Node.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::ListableRole.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Abstract.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Unparsers::Hennig86.3pm Installing /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/man/man3/Bio::Phylo::Parsers::Json.3pm + find /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64 -type f -name .packlist -exec rm -f '{}' ';' + find /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64 -depth -type d -exec rmdir '{}' ';' + /bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr + /usr/lib/rpm/find-debuginfo.sh --strict-build-id /builddir/build/BUILD/Bio-Phylo-0.58 + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/brp-python-bytecompile + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.V2oQ6e + umask 022 + cd /builddir/build/BUILD + cd Bio-Phylo-0.58 + unset DISPLAY + make test PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t # Testing Bio::Phylo 0.58, Perl 5.010001 t/00-load.t ............. ok t/01-phylo.t ............ ok t/02-newick.t ........... ok t/03-node.t ............. ok t/04-generator.t ........ skipped: Math::Random not installed t/05-trees.t ............ ok t/06-tree.t ............. ok t/07-unparse.t .......... ok t/08-datum.t ............ ok t/09-matrix.t ........... ok t/10-matrices.t ......... ok t/11-taxon.t ............ ok t/12-taxa.t ............. ok t/13-listable.t ......... ok t/14-nexus.t ............ ok t/15-table.t ............ ok t/16-unparse.t .......... ok t/17-parse.t ............ ok t/18-taxlist.t .......... ok t/19-svg.t .............. ok t/20-nexml.t ............ skipped: env var NEXML_ROOT not set t/21-bioperl-tree.t ..... skipped: Bio::TreeIO not found t/22-bioperl-node.t ..... skipped: Bio::Tree::Node not found t/23-bioperl-treeio.t ... skipped: Bio::TreeIO not found t/24-bioperl-alignio.t .. skipped: Bio::AlignIO not found t/25-dom-mapping.t ...... ok t/26-dom.t .............. ok t/28-reroot.t ........... ok t/29-treemodels.t ....... skipped: Math::CDF not installed t/30-phyloxml.t ......... ok t/31-phylip.t ........... ok t/32-tolweb.t ........... ok t/33-models.t ........... ok t/34-json.t ............. skipped: XML::XML2JSON not installed t/35-processing.t ....... ok t/36-sets.t ............. ok t/37-memory.t ........... ok t/38-rdf.t .............. skipped: env var TEST_CDAO_RDF_GENERATION not set t/39-nexussets.t ........ ok t/40-hennig86.t ......... ok t/41-charstatelabels.t .. ok t/42-simplify-newick.t .. ok t/43-adjacency.t ........ ok t/44-tnrs.t ............. ok t/45-fastq.t ............ ok t/46-noformat.t ......... ok t/47-clone.t ............ ok t/48-drawnoderole.t ..... ok t/49-drawtreerole.t ..... ok t/perl-critic.t ......... skipped: env var TEST_AUTHOR not set t/pod-coverage.t ........ skipped: env var TEST_AUTHOR not set t/pod.t ................. skipped: Test::Pod 1.14 required for testing POD t/regress_18208.t ....... ok t/regress_21209.t ....... ok t/regress_21417.t ....... ok t/regress_22813.t ....... ok t/regress_35511.t ....... ok t/regress_41070.t ....... skipped: BioPerl not installed t/regress_51602.t ....... ok t/regress_52960.t ....... ok All tests successful. Files=60, Tests=2098, 17 wallclock secs ( 0.30 usr 0.07 sys + 16.56 cusr 0.49 csys = 17.42 CPU) Result: PASS + exit 0 Processing files: perl-Bio-Phylo-0.58-1.el6.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.tlfZBT + umask 022 + cd /builddir/build/BUILD + cd Bio-Phylo-0.58 + DOCDIR=/builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/doc/perl-Bio-Phylo-0.58 + export DOCDIR + rm -rf /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/doc/perl-Bio-Phylo-0.58 + /bin/mkdir -p /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/doc/perl-Bio-Phylo-0.58 + cp -pr COPYING LICENSE META.json README.md /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64/usr/share/doc/perl-Bio-Phylo-0.58 + exit 0 Provides: perl(Bio::Phylo) = 0.58 perl(Bio::Phylo::Factory) perl(Bio::Phylo::Forest) perl(Bio::Phylo::Forest::DrawNodeRole) perl(Bio::Phylo::Forest::DrawTreeRole) perl(Bio::Phylo::Forest::Node) perl(Bio::Phylo::Forest::NodeRole) perl(Bio::Phylo::Forest::Tree) perl(Bio::Phylo::Forest::TreeRole) perl(Bio::Phylo::Generator) perl(Bio::Phylo::IO) perl(Bio::Phylo::Identifiable) perl(Bio::Phylo::Listable) perl(Bio::Phylo::ListableRole) perl(Bio::Phylo::Matrices) perl(Bio::Phylo::Matrices::Character) perl(Bio::Phylo::Matrices::Characters) perl(Bio::Phylo::Matrices::Datatype) perl(Bio::Phylo::Matrices::Datatype::Continuous) perl(Bio::Phylo::Matrices::Datatype::Custom) perl(Bio::Phylo::Matrices::Datatype::Dna) perl(Bio::Phylo::Matrices::Datatype::Illumina) perl(Bio::Phylo::Matrices::Datatype::Mixed) perl(Bio::Phylo::Matrices::Datatype::Protein) perl(Bio::Phylo::Matrices::Datatype::Restriction) perl(Bio::Phylo::Matrices::Datatype::Rna) perl(Bio::Phylo::Matrices::Datatype::Sanger) perl(Bio::Phylo::Matrices::Datatype::Solexa) perl(Bio::Phylo::Matrices::Datatype::Standard) perl(Bio::Phylo::Matrices::Datum) perl(Bio::Phylo::Matrices::DatumRole) perl(Bio::Phylo::Matrices::Matrix) perl(Bio::Phylo::Matrices::MatrixRole) perl(Bio::Phylo::Matrices::TypeSafeData) perl(Bio::Phylo::Mediators::TaxaMediator) perl(Bio::Phylo::Models::Substitution::Dna) perl(Bio::Phylo::Models::Substitution::Dna::F81) perl(Bio::Phylo::Models::Substitution::Dna::GTR) perl(Bio::Phylo::Models::Substitution::Dna::HKY85) perl(Bio::Phylo::Models::Substitution::Dna::JC69) perl(Bio::Phylo::Models::Substitution::Dna::K80) perl(Bio::Phylo::NeXML::DOM) perl(Bio::Phylo::NeXML::DOM::Document) perl(Bio::Phylo::NeXML::DOM::Document::Libxml) perl(Bio::Phylo::NeXML::DOM::Document::Twig) perl(Bio::Phylo::NeXML::DOM::Element) perl(Bio::Phylo::NeXML::DOM::Element::Libxml) perl(Bio::Phylo::NeXML::DOM::Element::Twig) perl(Bio::Phylo::NeXML::Entities) perl(Bio::Phylo::NeXML::Meta) perl(Bio::Phylo::NeXML::Meta::XMLLiteral) perl(Bio::Phylo::NeXML::Writable) perl(Bio::Phylo::Parsers::Abstract) perl(Bio::Phylo::Parsers::Adjacency) perl(Bio::Phylo::Parsers::Fasta) perl(Bio::Phylo::Parsers::Fastq) perl(Bio::Phylo::Parsers::Figtree) perl(Bio::Phylo::Parsers::Json) perl(Bio::Phylo::Parsers::Newick) perl(Bio::Phylo::Parsers::Nexml) perl(Bio::Phylo::Parsers::Nexus) perl(Bio::Phylo::Parsers::Phylip) perl(Bio::Phylo::Parsers::Phyloxml) perl(Bio::Phylo::Parsers::Table) perl(Bio::Phylo::Parsers::Taxlist) perl(Bio::Phylo::Parsers::Tnrs) perl(Bio::Phylo::Parsers::Tolweb) perl(Bio::Phylo::Parsers::Ubiocbmeta) perl(Bio::Phylo::Parsers::Ubiometa) perl(Bio::Phylo::Parsers::Ubiosearch) perl(Bio::Phylo::PhyloWS) perl(Bio::Phylo::PhyloWS::Client) perl(Bio::Phylo::PhyloWS::Resource) perl(Bio::Phylo::PhyloWS::Resource::Description) perl(Bio::Phylo::PhyloWS::Service) perl(Bio::Phylo::PhyloWS::Service::Timetree) perl(Bio::Phylo::PhyloWS::Service::Tolweb) perl(Bio::Phylo::PhyloWS::Service::UbioClassificationBank) perl(Bio::Phylo::PhyloWS::Service::UbioNameBank) perl(Bio::Phylo::Project) perl(Bio::Phylo::Set) perl(Bio::Phylo::Taxa) perl(Bio::Phylo::Taxa::TaxaLinker) perl(Bio::Phylo::Taxa::Taxon) perl(Bio::Phylo::Taxa::TaxonLinker) perl(Bio::Phylo::Treedrawer) perl(Bio::Phylo::Treedrawer::Abstract) perl(Bio::Phylo::Treedrawer::Canvas) perl(Bio::Phylo::Treedrawer::Gif) perl(Bio::Phylo::Treedrawer::Jpeg) perl(Bio::Phylo::Treedrawer::Pdf) perl(Bio::Phylo::Treedrawer::Png) perl(Bio::Phylo::Treedrawer::Processing) perl(Bio::Phylo::Treedrawer::Svg) perl(Bio::Phylo::Treedrawer::Swf) perl(Bio::Phylo::Unparsers::Abstract) perl(Bio::Phylo::Unparsers::Adjacency) perl(Bio::Phylo::Unparsers::Cdao) perl(Bio::Phylo::Unparsers::Fasta) perl(Bio::Phylo::Unparsers::Hennig86) perl(Bio::Phylo::Unparsers::Html) perl(Bio::Phylo::Unparsers::Json) perl(Bio::Phylo::Unparsers::Mrp) perl(Bio::Phylo::Unparsers::Newick) perl(Bio::Phylo::Unparsers::Nexml) perl(Bio::Phylo::Unparsers::Nexus) perl(Bio::Phylo::Unparsers::Nwmsrdf) perl(Bio::Phylo::Unparsers::Pagel) perl(Bio::Phylo::Unparsers::Phylip) perl(Bio::Phylo::Unparsers::Phyloxml) perl(Bio::Phylo::Unparsers::Rss1) perl(Bio::Phylo::Unparsers::Taxlist) perl(Bio::Phylo::Util::CONSTANT) perl(Bio::Phylo::Util::CONSTANT::Int) perl(Bio::Phylo::Util::Dependency) perl(Bio::Phylo::Util::Exceptions) perl(Bio::Phylo::Util::IDPool) perl(Bio::Phylo::Util::Logger) perl(Bio::Phylo::Util::MOP) perl(Bio::Phylo::Util::OptionalInterface) perl(Bio::Phylo::Util::StackTrace) perl(Bio::PhyloRole) perl(DB) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(VersionedDependencies) <= 3.0.3-1 Requires: perl(Attribute::Handlers) perl(Bio::Phylo) perl(Bio::Phylo::Factory) perl(Bio::Phylo::Forest::DrawNodeRole) perl(Bio::Phylo::Forest::DrawTreeRole) perl(Bio::Phylo::Forest::Node) perl(Bio::Phylo::Forest::NodeRole) perl(Bio::Phylo::Forest::Tree) perl(Bio::Phylo::Forest::TreeRole) perl(Bio::Phylo::IO) perl(Bio::Phylo::Identifiable) perl(Bio::Phylo::ListableRole) perl(Bio::Phylo::Matrices::Datatype) perl(Bio::Phylo::Matrices::Datum) perl(Bio::Phylo::Matrices::DatumRole) perl(Bio::Phylo::Mediators::TaxaMediator) perl(Bio::Phylo::NeXML::DOM) perl(Bio::Phylo::NeXML::DOM::Document) perl(Bio::Phylo::NeXML::DOM::Element::Libxml) perl(Bio::Phylo::NeXML::Entities) perl(Bio::Phylo::NeXML::Meta::XMLLiteral) perl(Bio::Phylo::NeXML::Writable) perl(Bio::Phylo::Util::CONSTANT) perl(Bio::Phylo::Util::CONSTANT::Int) perl(Bio::Phylo::Util::Dependency) perl(Bio::Phylo::Util::Exceptions) perl(Bio::Phylo::Util::IDPool) perl(Bio::Phylo::Util::Logger) perl(Bio::Phylo::Util::MOP) perl(Bio::Phylo::Util::OptionalInterface) perl(Bio::Phylo::Util::StackTrace) perl(Bio::PhyloRole) perl(Carp) perl(Data::Dumper) perl(File::Spec::Unix) perl(File::Temp) perl(IO::File) perl(IO::Handle) perl(List::Util) perl(Scalar::Util) perl(attributes) perl(base) perl(constant) perl(overload) perl(strict) perl(utf8) perl(vars) perl(warnings) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64 warning: Could not canonicalize hostname: copr-builder-601459892.novalocal Wrote: /builddir/build/RPMS/perl-Bio-Phylo-0.58-1.el6.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.niZeez + umask 022 + cd /builddir/build/BUILD + cd Bio-Phylo-0.58 + rm -rf /builddir/build/BUILDROOT/perl-Bio-Phylo-0.58-1.el6.x86_64 + exit 0 Child return code was: 0 LEAVE do -->