Mock Version: 1.2.12
ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/jhdf5.spec'], chrootPath='/var/lib/mock/epel-7-x86_64-mockbuilder-22752/root'shell=FalseprintOutput=Falseenv={'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock'}gid=135user='mockbuild'timeout=0logger=<mockbuild.trace_decorator.getLog object at 0x7fe36d9f3710>uid=1001)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/jhdf5.spec'] with env {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock'} and shell False
warning: Could not canonicalize hostname: copr-builder-195046749
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/jhdf5-2.11.0-1.el7.centos.src.rpm
Child return code was: 0
LEAVE do --> 

ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps  /builddir/build/SPECS/jhdf5.spec '], chrootPath='/var/lib/mock/epel-7-x86_64-mockbuilder-22752/root'shell=FalseprintOutput=Falseenv={'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock'}gid=135user='mockbuild'timeout=0logger=<mockbuild.trace_decorator.getLog object at 0x7fe36d9f3710>uid=1001)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps  /builddir/build/SPECS/jhdf5.spec '] with env {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock'} and shell False
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.vGONzi
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf hdf-java-2.11.0
+ /usr/bin/gzip -dc /builddir/build/SOURCES/hdf-java-2.11.0.tar.gz
+ /usr/bin/tar -xf -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd hdf-java-2.11.0
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #1 (jhdf5-0001-add-a-generic-linux-host.patch):'
Patch #1 (jhdf5-0001-add-a-generic-linux-host.patch):
+ /usr/bin/cat /builddir/build/SOURCES/jhdf5-0001-add-a-generic-linux-host.patch
+ /usr/bin/patch -p1 --fuzz=0
patching file configure.in
Patch #2 (jhdf5-0002-add-H4_-prefix-to-constants.patch):
+ echo 'Patch #2 (jhdf5-0002-add-H4_-prefix-to-constants.patch):'
+ /usr/bin/cat /builddir/build/SOURCES/jhdf5-0002-add-H4_-prefix-to-constants.patch
+ /usr/bin/patch -p1 --fuzz=0
patching file native/hdflib/hdfsdsImp.c
patching file native/hdflib/hdfstructsutil.c
patching file native/hdflib/hdfvdataImp.c
Patch #3 (jhdf5-0003-use-system-linker-for-shared-library.patch):
+ echo 'Patch #3 (jhdf5-0003-use-system-linker-for-shared-library.patch):'
+ /usr/bin/patch -p1 --fuzz=0
+ /usr/bin/cat /builddir/build/SOURCES/jhdf5-0003-use-system-linker-for-shared-library.patch
patching file configure.in
patching file native/hdf5lib/Makefile.in
Patch #4 (jhdf5-0004-remove-writable-prefix-check.patch):
+ echo 'Patch #4 (jhdf5-0004-remove-writable-prefix-check.patch):'
+ /usr/bin/patch -p1 --fuzz=0
+ /usr/bin/cat /builddir/build/SOURCES/jhdf5-0004-remove-writable-prefix-check.patch
patching file configure.in
Patch #5 (jhdf5-0005-update-config.sub-and-config.guess.patch):
+ echo 'Patch #5 (jhdf5-0005-update-config.sub-and-config.guess.patch):'
+ /usr/bin/patch -p1 --fuzz=0
+ /usr/bin/cat /builddir/build/SOURCES/jhdf5-0005-update-config.sub-and-config.guess.patch
patching file config/config.guess
patching file config/config.sub
Patch #6 (jhdf5-0006-update-configure.patch):
+ echo 'Patch #6 (jhdf5-0006-update-configure.patch):'
+ /usr/bin/patch -p1 --fuzz=0
+ /usr/bin/cat /builddir/build/SOURCES/jhdf5-0006-update-configure.patch
patching file configure
++ find -name '*.jar'
+ rm ./lib/fest-assert.jar ./lib/jcip-annotations.jar ./lib/fest-assert-1.2-sources.jar ./lib/fest-reflect-1.2-sources.jar ./lib/fest-reflect-1.2.jar ./lib/fest-swing-1.2.jar ./lib/slf4j-api-1.7.5.jar ./lib/ext/slf4j-simple-1.7.5-sources.jar ./lib/ext/junit-4.11.jar ./lib/ext/netcdfAll-4.3.jar ./lib/ext/hamcrest-core-1.3-sources.jar ./lib/ext/hamcrest-core-1.3-javadoc.jar ./lib/ext/slf4j-simple-1.7.5.jar ./lib/ext/slf4j-nop-1.7.5.jar ./lib/ext/junit-4.11-javadoc.jar ./lib/ext/netcdf-4.2.jar ./lib/ext/hamcrest-core-1.3.jar ./lib/ext/junit-4.11-sources.jar ./lib/ext/slf4j-nop-1.7.5-sources.jar ./lib/slf4j-api-1.7.5-sources.jar ./lib/fest-swing.jar ./lib/slf4j-simple-1.7.5.jar ./lib/fits.jar ./lib/fest-assert-1.2.jar ./lib/jcip-annotations-1.0-sources.jar ./lib/junit.jar ./lib/netcdf.jar ./lib/fest-util.jar ./lib/fest-reflect.jar ./lib/fest-swing-1.2-sources.jar ./lib/hamcrest-core.jar ./lib/fest-util-1.1.2-sources.jar ./lib/jcip-annotations-1.0.jar ./lib/fest-util-1.1.2.jar
+ build-jar-repository -p lib/ junit slf4j-
+ ln -s slf4j-api.jar lib/slf4j-api-1.7.5.jar
+ ln -s slf4j-nop.jar lib/slf4j-nop-1.7.5.jar
++ find docs -type f
+ chmod -x docs/USING_logging.txt docs/javadocs/overview-summary.html docs/javadocs/deprecated-list.html docs/javadocs/allclasses-frame.html docs/javadocs/allclasses-noframe.html docs/javadocs/overview-tree.html docs/javadocs/serialized-form.html docs/javadocs/package-list docs/javadocs/help-doc.html docs/javadocs/resources/titlebar.gif docs/javadocs/resources/tab.gif docs/javadocs/resources/titlebar_end.gif docs/javadocs/resources/background.gif docs/javadocs/index-all.html docs/javadocs/constant-values.html docs/javadocs/ncsa/hdf/view/NewImageDialog.html docs/javadocs/ncsa/hdf/view/NewDatasetDialog.html docs/javadocs/ncsa/hdf/view/NewFileDialog.html docs/javadocs/ncsa/hdf/view/DefaultImageView.html docs/javadocs/ncsa/hdf/view/NewTableDataDialog.html docs/javadocs/ncsa/hdf/view/PaletteView.html docs/javadocs/ncsa/hdf/view/ViewProperties.html docs/javadocs/ncsa/hdf/view/TreeView.html docs/javadocs/ncsa/hdf/view/NewGroupDialog.html docs/javadocs/ncsa/hdf/view/NewLinkDialog.html docs/javadocs/ncsa/hdf/view/HelpView.html docs/javadocs/ncsa/hdf/view/DefaultFileFilter.html docs/javadocs/ncsa/hdf/view/ViewManager.html docs/javadocs/ncsa/hdf/view/DataView.html docs/javadocs/ncsa/hdf/view/DefaultTableView.html docs/javadocs/ncsa/hdf/view/package-summary.html docs/javadocs/ncsa/hdf/view/ViewProperties.DATA_VIEW_KEY.html docs/javadocs/ncsa/hdf/view/TextView.html docs/javadocs/ncsa/hdf/view/FileConversionDialog.html docs/javadocs/ncsa/hdf/view/Tools.html docs/javadocs/ncsa/hdf/view/ViewProperties.BITMASK_OP.html docs/javadocs/ncsa/hdf/view/TableView.html docs/javadocs/ncsa/hdf/view/NewDatatypeDialog.html docs/javadocs/ncsa/hdf/view/DefaultMetaDataView.html docs/javadocs/ncsa/hdf/view/NewAttributeDialog.html docs/javadocs/ncsa/hdf/view/package-tree.html docs/javadocs/ncsa/hdf/view/ImageView.html docs/javadocs/ncsa/hdf/view/package-frame.html docs/javadocs/ncsa/hdf/view/package-use.html docs/javadocs/ncsa/hdf/view/Chart.html docs/javadocs/ncsa/hdf/view/DefaultPaletteView.html docs/javadocs/ncsa/hdf/view/MetaDataView.html docs/javadocs/ncsa/hdf/view/UserOptionsDialog.html docs/javadocs/ncsa/hdf/view/MathConversionDialog.html docs/javadocs/ncsa/hdf/view/DefaultTreeView.html docs/javadocs/ncsa/hdf/view/DataOptionDialog.html docs/javadocs/ncsa/hdf/view/HDFView.html docs/javadocs/ncsa/hdf/view/class-use/NewImageDialog.html docs/javadocs/ncsa/hdf/view/class-use/NewDatasetDialog.html docs/javadocs/ncsa/hdf/view/class-use/NewFileDialog.html docs/javadocs/ncsa/hdf/view/class-use/DefaultImageView.html docs/javadocs/ncsa/hdf/view/class-use/NewTableDataDialog.html docs/javadocs/ncsa/hdf/view/class-use/PaletteView.html docs/javadocs/ncsa/hdf/view/class-use/ViewProperties.html docs/javadocs/ncsa/hdf/view/class-use/TreeView.html docs/javadocs/ncsa/hdf/view/class-use/NewGroupDialog.html docs/javadocs/ncsa/hdf/view/class-use/NewLinkDialog.html docs/javadocs/ncsa/hdf/view/class-use/HelpView.html docs/javadocs/ncsa/hdf/view/class-use/DefaultFileFilter.html docs/javadocs/ncsa/hdf/view/class-use/ViewManager.html docs/javadocs/ncsa/hdf/view/class-use/DataView.html docs/javadocs/ncsa/hdf/view/class-use/DefaultTableView.html docs/javadocs/ncsa/hdf/view/class-use/ViewProperties.DATA_VIEW_KEY.html docs/javadocs/ncsa/hdf/view/class-use/TextView.html docs/javadocs/ncsa/hdf/view/class-use/FileConversionDialog.html docs/javadocs/ncsa/hdf/view/class-use/Tools.html docs/javadocs/ncsa/hdf/view/class-use/ViewProperties.BITMASK_OP.html docs/javadocs/ncsa/hdf/view/class-use/TableView.html docs/javadocs/ncsa/hdf/view/class-use/NewDatatypeDialog.html docs/javadocs/ncsa/hdf/view/class-use/DefaultMetaDataView.html docs/javadocs/ncsa/hdf/view/class-use/NewAttributeDialog.html docs/javadocs/ncsa/hdf/view/class-use/ImageView.html docs/javadocs/ncsa/hdf/view/class-use/Chart.html docs/javadocs/ncsa/hdf/view/class-use/DefaultPaletteView.html docs/javadocs/ncsa/hdf/view/class-use/MetaDataView.html docs/javadocs/ncsa/hdf/view/class-use/UserOptionsDialog.html docs/javadocs/ncsa/hdf/view/class-use/MathConversionDialog.html docs/javadocs/ncsa/hdf/view/class-use/DefaultTreeView.html docs/javadocs/ncsa/hdf/view/class-use/DataOptionDialog.html docs/javadocs/ncsa/hdf/view/class-use/HDFView.html docs/javadocs/ncsa/hdf/view/class-use/DefaultTextView.html docs/javadocs/ncsa/hdf/view/DefaultTextView.html docs/javadocs/ncsa/hdf/hdflib/HDFRLECompInfo.html docs/javadocs/ncsa/hdf/hdflib/HDFChunkInfo.html docs/javadocs/ncsa/hdf/hdflib/HDFSKPHUFFCompInfo.html docs/javadocs/ncsa/hdf/hdflib/HDFJavaException.html docs/javadocs/ncsa/hdf/hdflib/HDFNBITChunkInfo.html docs/javadocs/ncsa/hdf/hdflib/HDFException.html docs/javadocs/ncsa/hdf/hdflib/HDFTable.html docs/javadocs/ncsa/hdf/hdflib/HDFOldCompInfo.html docs/javadocs/ncsa/hdf/hdflib/HDFOldRLECompInfo.html docs/javadocs/ncsa/hdf/hdflib/HDFJPEGCompInfo.html docs/javadocs/ncsa/hdf/hdflib/package-summary.html docs/javadocs/ncsa/hdf/hdflib/HDFSZIPCompInfo.html docs/javadocs/ncsa/hdf/hdflib/package-tree.html docs/javadocs/ncsa/hdf/hdflib/HDFLibrary.html docs/javadocs/ncsa/hdf/hdflib/package-frame.html docs/javadocs/ncsa/hdf/hdflib/package-use.html docs/javadocs/ncsa/hdf/hdflib/HDFArray.html docs/javadocs/ncsa/hdf/hdflib/HDFLibraryException.html docs/javadocs/ncsa/hdf/hdflib/HDFCompInfo.html docs/javadocs/ncsa/hdf/hdflib/HDFNewCompInfo.html docs/javadocs/ncsa/hdf/hdflib/HDFDeflateCompInfo.html docs/javadocs/ncsa/hdf/hdflib/HDFNBITCompInfo.html docs/javadocs/ncsa/hdf/hdflib/HDFNotImplementedException.html docs/javadocs/ncsa/hdf/hdflib/HDFIMCOMPCompInfo.html docs/javadocs/ncsa/hdf/hdflib/HDFDeprecated.html docs/javadocs/ncsa/hdf/hdflib/HDFNativeData.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFRLECompInfo.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFChunkInfo.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFSKPHUFFCompInfo.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFJavaException.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFNBITChunkInfo.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFException.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFTable.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFOldCompInfo.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFOldRLECompInfo.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFJPEGCompInfo.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFSZIPCompInfo.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFLibrary.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFArray.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFLibraryException.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFCompInfo.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFNewCompInfo.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFDeflateCompInfo.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFNBITCompInfo.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFNotImplementedException.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFIMCOMPCompInfo.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFDeprecated.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFNativeData.html docs/javadocs/ncsa/hdf/hdflib/class-use/HDFConstants.html docs/javadocs/ncsa/hdf/hdflib/HDFConstants.html docs/javadocs/ncsa/hdf/hdf5lib/HDF5Constants.html docs/javadocs/ncsa/hdf/hdf5lib/HDF5GroupInfo.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/H5D_iterate_t.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/H5L_iterate_t.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/H5O_iterate_t.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/Callbacks.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/package-summary.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/H5L_iterate_cb.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/H5D_iterate_cb.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/package-tree.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/package-frame.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/package-use.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/H5O_iterate_cb.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/class-use/H5D_iterate_t.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/class-use/H5L_iterate_t.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/class-use/H5O_iterate_t.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/class-use/Callbacks.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/class-use/H5L_iterate_cb.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/class-use/H5D_iterate_cb.html docs/javadocs/ncsa/hdf/hdf5lib/callbacks/class-use/H5O_iterate_cb.html docs/javadocs/ncsa/hdf/hdf5lib/package-summary.html docs/javadocs/ncsa/hdf/hdf5lib/H5.html docs/javadocs/ncsa/hdf/hdf5lib/package-tree.html docs/javadocs/ncsa/hdf/hdf5lib/package-frame.html docs/javadocs/ncsa/hdf/hdf5lib/package-use.html docs/javadocs/ncsa/hdf/hdf5lib/HDFArray.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5FunctionEntryExitException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5ExternalFileListException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5DataStorageException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5InternalErrorException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5FileInterfaceException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5ResourceUnavailableException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5FunctionArgumentException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/package-summary.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5LibraryException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5HeapException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5AttributeException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5DataspaceInterfaceException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5LowLevelIOException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/package-tree.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5DataFiltersException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/package-frame.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/package-use.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5JavaException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5ReferenceException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5MetaDataCacheException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5ObjectHeaderException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5PropertyListInterfaceException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5BtreeException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5DatatypeInterfaceException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5DatasetInterfaceException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5SymbolTableException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5FunctionEntryExitException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5ExternalFileListException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5DataStorageException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5InternalErrorException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5FileInterfaceException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5ResourceUnavailableException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5FunctionArgumentException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5LibraryException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5HeapException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5AttributeException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5DataspaceInterfaceException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5LowLevelIOException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5DataFiltersException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5JavaException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5ReferenceException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5MetaDataCacheException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5ObjectHeaderException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5PropertyListInterfaceException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5BtreeException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5DatatypeInterfaceException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5DatasetInterfaceException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5SymbolTableException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5AtomException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5Exception.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5AtomException.html docs/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5Exception.html docs/javadocs/ncsa/hdf/hdf5lib/structs/H5_ih_info_t.html docs/javadocs/ncsa/hdf/hdf5lib/structs/H5O_info_t.html docs/javadocs/ncsa/hdf/hdf5lib/structs/H5AC_cache_config_t.html docs/javadocs/ncsa/hdf/hdf5lib/structs/package-summary.html docs/javadocs/ncsa/hdf/hdf5lib/structs/package-tree.html docs/javadocs/ncsa/hdf/hdf5lib/structs/package-frame.html docs/javadocs/ncsa/hdf/hdf5lib/structs/H5A_info_t.html docs/javadocs/ncsa/hdf/hdf5lib/structs/package-use.html docs/javadocs/ncsa/hdf/hdf5lib/structs/H5L_info_t.html docs/javadocs/ncsa/hdf/hdf5lib/structs/H5O_hdr_info_t.html docs/javadocs/ncsa/hdf/hdf5lib/structs/H5G_info_t.html docs/javadocs/ncsa/hdf/hdf5lib/structs/class-use/H5_ih_info_t.html docs/javadocs/ncsa/hdf/hdf5lib/structs/class-use/H5O_info_t.html docs/javadocs/ncsa/hdf/hdf5lib/structs/class-use/H5AC_cache_config_t.html docs/javadocs/ncsa/hdf/hdf5lib/structs/class-use/H5A_info_t.html docs/javadocs/ncsa/hdf/hdf5lib/structs/class-use/H5L_info_t.html docs/javadocs/ncsa/hdf/hdf5lib/structs/class-use/H5O_hdr_info_t.html docs/javadocs/ncsa/hdf/hdf5lib/structs/class-use/H5G_info_t.html docs/javadocs/ncsa/hdf/hdf5lib/HDFNativeData.html docs/javadocs/ncsa/hdf/hdf5lib/class-use/HDF5Constants.html docs/javadocs/ncsa/hdf/hdf5lib/class-use/HDF5GroupInfo.html docs/javadocs/ncsa/hdf/hdf5lib/class-use/H5.html docs/javadocs/ncsa/hdf/hdf5lib/class-use/HDFArray.html docs/javadocs/ncsa/hdf/hdf5lib/class-use/HDFNativeData.html docs/javadocs/ncsa/hdf/object/CompoundDS.html docs/javadocs/ncsa/hdf/object/FileFormat.html docs/javadocs/ncsa/hdf/object/Datatype.html docs/javadocs/ncsa/hdf/object/Dataset.html docs/javadocs/ncsa/hdf/object/Attribute.html docs/javadocs/ncsa/hdf/object/h5/H5ScalarDS.html docs/javadocs/ncsa/hdf/object/h5/H5File.html docs/javadocs/ncsa/hdf/object/h5/H5Datatype.html docs/javadocs/ncsa/hdf/object/h5/package-summary.html docs/javadocs/ncsa/hdf/object/h5/H5Link.html docs/javadocs/ncsa/hdf/object/h5/package-tree.html docs/javadocs/ncsa/hdf/object/h5/package-frame.html docs/javadocs/ncsa/hdf/object/h5/package-use.html docs/javadocs/ncsa/hdf/object/h5/H5Group.html docs/javadocs/ncsa/hdf/object/h5/class-use/H5ScalarDS.html docs/javadocs/ncsa/hdf/object/h5/class-use/H5File.html docs/javadocs/ncsa/hdf/object/h5/class-use/H5Datatype.html docs/javadocs/ncsa/hdf/object/h5/class-use/H5Link.html docs/javadocs/ncsa/hdf/object/h5/class-use/H5Group.html docs/javadocs/ncsa/hdf/object/h5/class-use/H5CompoundDS.html docs/javadocs/ncsa/hdf/object/h5/H5CompoundDS.html docs/javadocs/ncsa/hdf/object/Metadata.html docs/javadocs/ncsa/hdf/object/package-summary.html docs/javadocs/ncsa/hdf/object/Group.html docs/javadocs/ncsa/hdf/object/package-tree.html docs/javadocs/ncsa/hdf/object/package-frame.html docs/javadocs/ncsa/hdf/object/package-use.html docs/javadocs/ncsa/hdf/object/ScalarDS.html docs/javadocs/ncsa/hdf/object/HObject.html docs/javadocs/ncsa/hdf/object/class-use/CompoundDS.html docs/javadocs/ncsa/hdf/object/class-use/FileFormat.html docs/javadocs/ncsa/hdf/object/class-use/Datatype.html docs/javadocs/ncsa/hdf/object/class-use/Dataset.html docs/javadocs/ncsa/hdf/object/class-use/Attribute.html docs/javadocs/ncsa/hdf/object/class-use/Metadata.html docs/javadocs/ncsa/hdf/object/class-use/Group.html docs/javadocs/ncsa/hdf/object/class-use/ScalarDS.html docs/javadocs/ncsa/hdf/object/class-use/HObject.html docs/javadocs/ncsa/hdf/object/class-use/DataFormat.html docs/javadocs/ncsa/hdf/object/h4/package-summary.html docs/javadocs/ncsa/hdf/object/h4/package-tree.html docs/javadocs/ncsa/hdf/object/h4/package-frame.html docs/javadocs/ncsa/hdf/object/h4/package-use.html docs/javadocs/ncsa/hdf/object/h4/H4Group.html docs/javadocs/ncsa/hdf/object/h4/H4GRImage.html docs/javadocs/ncsa/hdf/object/h4/H4Datatype.html docs/javadocs/ncsa/hdf/object/h4/H4SDS.html docs/javadocs/ncsa/hdf/object/h4/H4File.html docs/javadocs/ncsa/hdf/object/h4/H4Vdata.html docs/javadocs/ncsa/hdf/object/h4/class-use/H4Group.html docs/javadocs/ncsa/hdf/object/h4/class-use/H4GRImage.html docs/javadocs/ncsa/hdf/object/h4/class-use/H4Datatype.html docs/javadocs/ncsa/hdf/object/h4/class-use/H4SDS.html docs/javadocs/ncsa/hdf/object/h4/class-use/H4File.html docs/javadocs/ncsa/hdf/object/h4/class-use/H4Vdata.html docs/javadocs/ncsa/hdf/object/DataFormat.html docs/javadocs/index.html docs/javadocs/stylesheet.css docs/javadocs/overview-frame.html docs/USING_HDFJAVA_CMake.txt docs/RELEASE.txt docs/INSTALL_CMake.txt docs/samples/swp05569slg.fits docs/samples/misr_am1_metadata.hdf docs/samples/apollo17_earth.jpg docs/samples/annras.hdf docs/samples/Roy.nc docs/samples/data40x10.txt docs/samples/hdf5_test.h5
++ find native -type f
+ chmod -x native/hdflib/hdfvdataImp.c native/hdflib/hdfstructsutil.c native/hdflib/hdfsdsImp.c native/hdflib/hdfvgroupImp.c native/hdflib/hdfheImp.c native/hdflib/hdfgrImp.c native/hdflib/hdfvqImp.c native/hdflib/hdfnativeImp.c native/hdflib/hdfdfpalImp.c native/hdflib/hdfdfuImp.c native/hdflib/hdfvsqImp.c native/hdflib/hdfdfanImp.c native/hdflib/hdfanImp.c native/hdflib/hdfdfcompImp.c native/hdflib/hdfImp.c native/hdflib/hdfvhImp.c native/hdflib/hdfr8Imp.c native/hdflib/CMakeLists.txt native/hdflib/hdfhxImp.c native/hdflib/hdfvfImp.c native/hdflib/Makefile.in native/hdflib/hdfdfsdImp.c native/hdflib/hdfr24Imp.c native/hdflib/hdfexceptionImp.c native/hdf5lib/Makefile.in native/hdf5lib/h5jni.h native/hdf5lib/h5lImp.c native/hdf5lib/h5oImp.h native/hdf5lib/h5iImp.h native/hdf5lib/h5aImp.h native/hdf5lib/h5gImp.c native/hdf5lib/h5fImp.h native/hdf5lib/h5eImp.h native/hdf5lib/h5sImp.h native/hdf5lib/h5fImp.c native/hdf5lib/h5rImp.c native/hdf5lib/h5iImp.c native/hdf5lib/h5sImp.c native/hdf5lib/h5util.c native/hdf5lib/h5util.h native/hdf5lib/h5oImp.c native/hdf5lib/h5tImp.h native/hdf5lib/exceptionImp.c native/hdf5lib/h5zImp.c native/hdf5lib/h5pImp.c native/hdf5lib/CMakeLists.txt native/hdf5lib/h5pImp.h native/hdf5lib/h5gImp.h native/hdf5lib/h5zImp.h native/hdf5lib/Configure/scr native/hdf5lib/Configure/H5Constants-needed native/hdf5lib/Configure/Makefile.in native/hdf5lib/h5aImp.c native/hdf5lib/h5tImp.c native/hdf5lib/h5Imp.c native/hdf5lib/nativeData.c native/hdf5lib/h5rImp.h native/hdf5lib/h5lImp.h native/hdf5lib/h5dImp.c native/hdf5lib/h5dImp.h native/hdf5lib/h5Constants.c native/hdf5lib/h5eImp.c native/CMakeLists.txt native/Makefile.in
+ chmod -x COPYING
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.oR6D4X
+ umask 022
+ cd /builddir/build/BUILD
+ cd hdf-java-2.11.0
+ CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro '
+ export LDFLAGS
+ '[' 1 == 1 ']'
+ '[' x86_64 == ppc64le ']'
++ find . -name config.guess -o -name config.sub
+ for i in '$(find . -name config.guess -o -name config.sub)'
++ basename ./config/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config/config.sub
++ basename ./config/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config/config.sub'
+ for i in '$(find . -name config.guess -o -name config.sub)'
++ basename ./config/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config/config.guess
++ basename ./config/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config/config.guess'
+ ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-jdk=/usr/lib/jvm/java/include,/usr/lib/jvm/java/lib --with-hdf5=/usr/include,/usr/lib64 --with-hdf4=/usr/include/hdf,/usr/lib64/hdf --without-h4toh5 --without-libsz --with-libz=/usr/include,/usr/lib64 --with-libjpeg=/usr/include,/usr/lib64
configure: WARNING: unrecognized options: --disable-dependency-tracking
checking if tr works... yes
checking for gawk... gawk
checking if expr works... yes
checking for x86_64-redhat-linux-gnu-gcc... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether make sets $(MAKE)... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for ceil in -lm... yes
checking for rm... /usr/bin/rm
checking for find... /usr/bin/find
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking target system type... x86_64-redhat-linux-gnu
FYI the target here is: x86_64-redhat-linux-gnu
checking gzip compression... yes
zlib found: -lz
checking jpeg compression... yes
jpeg found: -ljpeg
checking szip compression... suppressed
checking HDF4 library... yes
HDF4 found: /usr/lib64/hdf
checking dependencies for HDF4 library... OK
checking HDF5 library... yes
HDF5 found: -lhdf5
checking HDF4to5 library... suppressed
checking jni.h usability... yes
checking jni.h presence... yes
checking for jni.h... yes
checking for java... /usr/lib/jvm/java/bin/java
checking for javac... /usr/lib/jvm/java/bin/javac
checking for javadoc... /usr/lib/jvm/java/bin/javadoc
checking for jar... /usr/lib/jvm/java/bin/jar
configure: creating ./config.status
config.status: creating Makefile
config.status: creating native/Makefile
config.status: creating native/hdflib/Makefile
config.status: creating native/hdf5lib/Makefile
config.status: creating ncsa/Makefile
config.status: creating ncsa/hdf/Makefile
config.status: creating ncsa/hdf/hdflib/Makefile
config.status: creating ncsa/hdf/hdf5lib/Makefile
config.status: creating ncsa/hdf/hdf5lib/exceptions/Makefile
config.status: creating ncsa/hdf/hdf5lib/callbacks/Makefile
config.status: creating ncsa/hdf/hdf5lib/structs/Makefile
config.status: creating ncsa/hdf/object/Makefile
config.status: creating ncsa/hdf/object/fits/Makefile
config.status: creating ncsa/hdf/object/h4/Makefile
config.status: creating ncsa/hdf/object/h5/Makefile
config.status: creating ncsa/hdf/object/nc2/Makefile
config.status: creating ncsa/hdf/view/Makefile
config.status: creating bin/hdfview.sh
config.status: creating test/Makefile
config.status: creating test/object/misc/Makefile
config.status: creating test/object/misc/testh4file.sh
config.status: creating test/object/misc/testh5file.sh
config.status: creating test/object/misc/runtests.sh
config.status: creating test/object/misc/TestH5Object.sh
config.status: creating test/object/misc/TestH5Table.sh
config.status: creating test/object/misc/TestH5MemoryLeak.sh
config.status: creating test/object/Makefile
config.status: creating test/object/unittests.sh
config.status: creating test/hdf5lib/junit.sh
config.status: creating test/hdf5lib/Makefile
config.status: creating examples/Makefile
config.status: creating examples/intro/Makefile
config.status: creating examples/datasets/Makefile
config.status: creating examples/datatypes/Makefile
config.status: creating examples/groups/Makefile
config.status: creating examples/runExample.sh
configure: WARNING: unrecognized options: --disable-dependency-tracking
+ pushd .
~/build/BUILD/hdf-java-2.11.0 ~/build/BUILD/hdf-java-2.11.0
+ cd ncsa
+ make
subdirs is  hdf
making all in ./hdf
make[1]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf'
subdirs is  hdf5lib hdflib object view
making all in ./hdf/hdf5lib
make[2]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/hdf5lib'
subdirs is  exceptions callbacks structs
making all in ./hdf/hdf5lib/exceptions
make[3]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/hdf5lib/exceptions'
subdirs is  NULL
/usr/lib/jvm/java/bin/javac -g -deprecation -d ../../../../lib -classpath /usr/lib/jvm/java/jre/lib/rt.jar:/builddir/build/BUILD/hdf-java-2.11.0:../../../../lib/slf4j-api-1.7.5.jar:../../../../lib:.  HDF5AtomException.java HDF5AttributeException.java HDF5BtreeException.java HDF5DataFiltersException.java HDF5DataStorageException.java HDF5DatasetInterfaceException.java HDF5DataspaceInterfaceException.java HDF5DatatypeInterfaceException.java HDF5Exception.java HDF5ExternalFileListException.java HDF5FileInterfaceException.java HDF5FunctionArgumentException.java HDF5FunctionEntryExitException.java HDF5HeapException.java HDF5InternalErrorException.java HDF5JavaException.java HDF5LibraryException.java HDF5LowLevelIOException.java HDF5MetaDataCacheException.java HDF5ObjectHeaderException.java HDF5PropertyListInterfaceException.java HDF5ReferenceException.java HDF5ResourceUnavailableException.java HDF5SymbolTableException.java
make[3]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/hdf5lib/exceptions'
making all in ./hdf/hdf5lib/callbacks
make[3]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/hdf5lib/callbacks'
subdirs is  NULL
make[3]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/hdf5lib/callbacks'
making all in ./hdf/hdf5lib/structs
make[3]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/hdf5lib/structs'
subdirs is  NULL
make[3]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/hdf5lib/structs'
make[2]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/hdf5lib'
making all in ./hdf/hdflib
make[2]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/hdflib'
subdirs is  NULL
/usr/lib/jvm/java/bin/javac -g -deprecation -d ../../../lib -classpath /usr/lib/jvm/java/jre/lib/rt.jar:/builddir/build/BUILD/hdf-java-2.11.0:../../../lib/slf4j-api-1.7.5.jar:../../../lib:.  HDFArray.java HDFChunkInfo.java HDFCompInfo.java HDFConstants.java HDFDeflateCompInfo.java HDFDeprecated.java HDFException.java HDFIMCOMPCompInfo.java HDFJPEGCompInfo.java HDFSZIPCompInfo.java HDFJavaException.java HDFLibrary.java HDFLibraryException.java HDFNBITChunkInfo.java HDFNBITCompInfo.java HDFNativeData.java HDFNewCompInfo.java HDFNotImplementedException.java HDFOldCompInfo.java HDFOldRLECompInfo.java HDFRLECompInfo.java HDFSKPHUFFCompInfo.java HDFTable.java
HDFDeprecated.java:19: warning: [deprecation] getJHIVersion() in HDFLibrary has been deprecated
        String v = HDFLibrary.getJHIVersion();
                             ^
HDFDeprecated.java:28: warning: [deprecation] getJHIVersion() in HDFLibrary has been deprecated
        HDFLibrary.getJHIVersion();
                  ^
HDFTable.java:19: warning: [deprecation] getJHIVersion() in HDFLibrary has been deprecated
        String v = HDFLibrary.getJHIVersion();
                             ^
3 warnings
make[2]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/hdflib'
making all in ./hdf/object
make[2]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/object'
subdirs is  fits h4 h5 nc2
making all in ./hdf/object/fits
make[3]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/object/fits'
subdirs is  NULL
/usr/lib/jvm/java/bin/javac -g -deprecation -d ../../../../lib -classpath /usr/lib/jvm/java/jre/lib/rt.jar:/builddir/build/BUILD/hdf-java-2.11.0:../../../../lib/fits.jar:../../../../lib/netcdf.jar:../../../../lib/slf4j-api-1.7.5.jar:../../../../lib:.  FitsDataset.java FitsDatatype.java FitsFile.java FitsGroup.java
FitsDataset.java:29: error: package nom.tam.fits does not exist
import nom.tam.fits.BasicHDU;
                   ^
FitsDataset.java:30: error: package nom.tam.fits does not exist
import nom.tam.fits.Header;
                   ^
FitsDataset.java:31: error: package nom.tam.fits does not exist
import nom.tam.fits.HeaderCard;
                   ^
FitsDataset.java:57: error: cannot find symbol
    private BasicHDU nativeDataset;
            ^
  symbol:   class BasicHDU
  location: class FitsDataset
FitsDataset.java:68: error: cannot find symbol
            BasicHDU hdu,
            ^
  symbol:   class BasicHDU
  location: class FitsDataset
FitsDatatype.java:20: error: package nom.tam.fits does not exist
import nom.tam.fits.BasicHDU;
                   ^
FitsFile.java:31: error: package nom.tam.fits does not exist
import nom.tam.fits.AsciiTableHDU;
                   ^
FitsFile.java:32: error: package nom.tam.fits does not exist
import nom.tam.fits.BasicHDU;
                   ^
FitsFile.java:33: error: package nom.tam.fits does not exist
import nom.tam.fits.BinaryTableHDU;
                   ^
FitsFile.java:34: error: package nom.tam.fits does not exist
import nom.tam.fits.Fits;
                   ^
FitsFile.java:35: error: package nom.tam.fits does not exist
import nom.tam.fits.ImageHDU;
                   ^
FitsFile.java:36: error: package nom.tam.fits does not exist
import nom.tam.fits.RandomGroupsHDU;
                   ^
FitsFile.java:37: error: package nom.tam.fits does not exist
import nom.tam.fits.TableHDU;
                   ^
FitsFile.java:58: error: cannot find symbol
    private Fits fitsFile;
            ^
  symbol:   class Fits
  location: class FitsFile
FitsFile.java:292: error: cannot find symbol
    public Fits getFitsFile() {
           ^
  symbol:   class Fits
  location: class FitsFile
FitsDataset.java:71: warning: [deprecation] ScalarDS(FileFormat,String,String,long[]) in ScalarDS has been deprecated
        super (fileFormat, dName, HObject.separator, oid);
        ^
FitsDataset.java:156: error: cannot find symbol
        Header header = nativeDataset.getHeader();
        ^
  symbol:   class Header
  location: class FitsDataset
FitsDataset.java:162: error: cannot find symbol
        HeaderCard hc = null;
        ^
  symbol:   class HeaderCard
  location: class FitsDataset
FitsDataset.java:170: error: cannot find symbol
            hc = (HeaderCard)it.next();
                  ^
  symbol:   class HeaderCard
  location: class FitsDataset
FitsDatatype.java:92: error: cannot find symbol
            case BasicHDU.BITPIX_BYTE:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:95: error: cannot find symbol
            case BasicHDU.BITPIX_SHORT:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:98: error: cannot find symbol
            case BasicHDU.BITPIX_INT:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:101: error: cannot find symbol
            case BasicHDU.BITPIX_LONG:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:104: error: cannot find symbol
            case BasicHDU.BITPIX_FLOAT:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:107: error: cannot find symbol
            case BasicHDU.BITPIX_DOUBLE:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:131: error: cannot find symbol
            case BasicHDU.BITPIX_BYTE:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:135: error: cannot find symbol
            case BasicHDU.BITPIX_SHORT:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:139: error: cannot find symbol
            case BasicHDU.BITPIX_INT:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:143: error: cannot find symbol
            case BasicHDU.BITPIX_LONG:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:147: error: cannot find symbol
            case BasicHDU.BITPIX_FLOAT:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:151: error: cannot find symbol
            case BasicHDU.BITPIX_DOUBLE:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:164: error: cannot find symbol
            case BasicHDU.BITPIX_BYTE:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:167: error: cannot find symbol
            case BasicHDU.BITPIX_SHORT:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:170: error: cannot find symbol
            case BasicHDU.BITPIX_INT:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:173: error: cannot find symbol
            case BasicHDU.BITPIX_LONG:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:176: error: cannot find symbol
            case BasicHDU.BITPIX_FLOAT:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:179: error: cannot find symbol
            case BasicHDU.BITPIX_DOUBLE:
                 ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:212: error: cannot find symbol
                nativeType = BasicHDU.BITPIX_BYTE;
                             ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:215: error: cannot find symbol
                nativeType = BasicHDU.BITPIX_SHORT;
                             ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:218: error: cannot find symbol
                nativeType = BasicHDU.BITPIX_INT;
                             ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:221: error: cannot find symbol
                nativeType = BasicHDU.BITPIX_LONG;
                             ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:226: error: cannot find symbol
                nativeType = BasicHDU.BITPIX_FLOAT;
                             ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsDatatype.java:229: error: cannot find symbol
                nativeType = BasicHDU.BITPIX_DOUBLE;
                             ^
  symbol:   variable BasicHDU
  location: class FitsDatatype
FitsFile.java:79: error: cannot find symbol
        	fitsFile = new Fits(fullFileName); 
        	               ^
  symbol:   class Fits
  location: class FitsFile
FitsFile.java:221: error: cannot find symbol
        BasicHDU[] hdus = null;
        ^
  symbol:   class BasicHDU
  location: class FitsFile
FitsFile.java:238: error: cannot find symbol
        BasicHDU hdu = null;
        ^
  symbol:   class BasicHDU
  location: class FitsFile
FitsFile.java:243: error: cannot find symbol
            if (hdu instanceof ImageHDU) {
                               ^
  symbol:   class ImageHDU
  location: class FitsFile
FitsFile.java:246: error: cannot find symbol
            else if (hdu instanceof RandomGroupsHDU) {
                                    ^
  symbol:   class RandomGroupsHDU
  location: class FitsFile
FitsFile.java:249: error: cannot find symbol
            else if (hdu instanceof TableHDU) {
                                    ^
  symbol:   class TableHDU
  location: class FitsFile
FitsFile.java:250: error: cannot find symbol
                if (hdu instanceof AsciiTableHDU) {
                                   ^
  symbol:   class AsciiTableHDU
  location: class FitsFile
FitsFile.java:253: error: cannot find symbol
                else if (hdu instanceof BinaryTableHDU) {
                                        ^
  symbol:   class BinaryTableHDU
  location: class FitsFile
FitsGroup.java:61: warning: [deprecation] Group(FileFormat,String,String,Group,long[]) in Group has been deprecated
        super (fileFormat, name, path, parent, ((theID == null) ? DEFAULT_OID : theID));
        ^
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
50 errors
2 warnings
make[3]: *** [all] Error 1
make[3]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/object/fits'
making all in ./hdf/object/h4
make[3]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/object/h4'
subdirs is  NULL
/usr/lib/jvm/java/bin/javac -g -deprecation -d ../../../../lib -classpath /usr/lib/jvm/java/jre/lib/rt.jar:/builddir/build/BUILD/hdf-java-2.11.0:../../../../lib/slf4j-api-1.7.5.jar:../../../../lib:.  H4Datatype.java H4File.java H4GRImage.java H4Group.java H4SDS.java H4Vdata.java
H4File.java:616: warning: [deprecation] copy(HObject,Group) in FileFormat has been deprecated
                    newNode.add((MutableTreeNode) copy(mObj, group));
                                                  ^
H4Group.java:80: warning: [deprecation] Group(FileFormat,String,String,Group,long[]) in Group has been deprecated
        super (theFile, name, path, parent, ((oid == null) ? DEFAULT_OID : oid));
        ^
H4GRImage.java:153: warning: [deprecation] ScalarDS(FileFormat,String,String,long[]) in ScalarDS has been deprecated
        super (theFile, name, path, oid);
        ^
H4GRImage.java:432: warning: [deprecation] convertToUnsignedC(Object) in Dataset has been deprecated
                tmpData = convertToUnsignedC(buf);
                          ^
H4SDS.java:152: warning: [deprecation] ScalarDS(FileFormat,String,String,long[]) in ScalarDS has been deprecated
        super (theFile, name, path, oid);
        ^
H4SDS.java:450: warning: [deprecation] convertToUnsignedC(Object) in Dataset has been deprecated
                tmpData = convertToUnsignedC(buf);
                          ^
H4SDS.java:664: warning: [deprecation] SDgetcompress(int,HDFCompInfo) in HDFLibrary has been deprecated
                boolean status = HDFLibrary.SDgetcompress(id, compInfo);
                                           ^
H4SDS.java:667: warning: [deprecation] SDgetcompress(int,HDFCompInfo) in HDFLibrary has been deprecated
                    HDFLibrary.SDgetcompress(id, comp);
                              ^
H4SDS.java:672: warning: [deprecation] SDgetcompress(int,HDFCompInfo) in HDFLibrary has been deprecated
                    HDFLibrary.SDgetcompress(id, comp);
                              ^
H4SDS.java:679: warning: [deprecation] SDgetcompress(int,HDFCompInfo) in HDFLibrary has been deprecated
                    HDFLibrary.SDgetcompress(id, comp);
                              ^
H4SDS.java:685: warning: [deprecation] SDgetcompress(int,HDFCompInfo) in HDFLibrary has been deprecated
                    HDFLibrary.SDgetcompress(id, comp);
                              ^
H4SDS.java:693: warning: [deprecation] SDgetcompress(int,HDFCompInfo) in HDFLibrary has been deprecated
                    HDFLibrary.SDgetcompress(id, comp);
                              ^
H4Vdata.java:138: warning: [deprecation] CompoundDS(FileFormat,String,String,long[]) in CompoundDS has been deprecated
        super (theFile, name, path, oid);
        ^
H4Vdata.java:293: warning: [deprecation] convertFromUnsignedC(Object) in Dataset has been deprecated
                    member_data = Dataset.convertFromUnsignedC(member_data);
                                         ^
H4Vdata.java:634: warning: [deprecation] copy(Group,String,long[],Object) in CompoundDS has been deprecated
    public Dataset copy(Group pgroup, String name, long[] dims, Object data)
                   ^
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
15 warnings
make[3]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/object/h4'
making all in ./hdf/object/h5
make[3]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/object/h5'
subdirs is  NULL
/usr/lib/jvm/java/bin/javac -g -deprecation -d ../../../../lib -classpath /usr/lib/jvm/java/jre/lib/rt.jar:/builddir/build/BUILD/hdf-java-2.11.0:../../../../lib/slf4j-api-1.7.5.jar:../../../../lib:.  H5CompoundDS.java H5Datatype.java H5File.java H5Group.java H5Link.java H5ScalarDS.java
H5File.java:2124: warning: [deprecation] H5Group(FileFormat,String,String,Group,long[]) in H5Group has been deprecated
                H5Group g = new H5Group(this, obj_name, fullPath, pgroup, oid); // deprecated!
                            ^
H5File.java:2214: warning: [deprecation] H5CompoundDS(FileFormat,String,String,long[]) in H5CompoundDS has been deprecated
                    d = new H5CompoundDS(this, obj_name, fullPath, oid); // deprecated!
                        ^
H5File.java:2218: warning: [deprecation] H5ScalarDS(FileFormat,String,String,long[]) in H5ScalarDS has been deprecated
                    d = new H5ScalarDS(this, obj_name, fullPath, oid); // deprecated!
                        ^
H5File.java:2226: warning: [deprecation] H5Datatype(FileFormat,String,String,long[]) in H5Datatype has been deprecated
                Datatype t = new H5Datatype(this, obj_name, fullPath, oid); // deprecated!
                             ^
H5File.java:2336: warning: [deprecation] H5Group(FileFormat,String,String,Group,long[]) in H5Group has been deprecated
                H5Group g = new H5Group(this, obj_name, fullPath, pgroup, oid); // deprecated!
                            ^
H5File.java:2423: warning: [deprecation] H5CompoundDS(FileFormat,String,String,long[]) in H5CompoundDS has been deprecated
                    d = new H5CompoundDS(this, obj_name, fullPath, oid); // deprecated!
                        ^
H5File.java:2427: warning: [deprecation] H5ScalarDS(FileFormat,String,String,long[]) in H5ScalarDS has been deprecated
                    d = new H5ScalarDS(this, obj_name, fullPath, oid); // deprecated!
                        ^
H5File.java:2435: warning: [deprecation] H5Datatype(FileFormat,String,String,long[]) in H5Datatype has been deprecated
                Datatype t = new H5Datatype(this, obj_name, fullPath, oid); // deprecated!
                             ^
H5Link.java:62: warning: [deprecation] HObject(FileFormat,String,String,long[]) in HObject has been deprecated
        super(theFile, theName, thePath, oid);
        ^
Note: H5Group.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
9 warnings
make[3]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/object/h5'
making all in ./hdf/object/nc2
make[3]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/object/nc2'
subdirs is  NULL
/usr/lib/jvm/java/bin/javac -g -deprecation -d ../../../../lib -classpath /usr/lib/jvm/java/jre/lib/rt.jar:/builddir/build/BUILD/hdf-java-2.11.0:../../../../lib/fits.jar:../../../../lib/netcdf.jar:../../../../lib:.  NC2Dataset.java NC2Datatype.java NC2File.java NC2Group.java
NC2Dataset.java:26: error: package ucar.ma2 does not exist
import ucar.ma2.DataType;
               ^
NC2Dataset.java:27: error: package ucar.nc2 does not exist
import ucar.nc2.Variable;
               ^
NC2Dataset.java:51: error: cannot find symbol
    private Variable nativeDataset;
            ^
  symbol:   class Variable
  location: class NC2Dataset
NC2Dataset.java:64: error: cannot find symbol
    public NC2Dataset(FileFormat fileFormat, Variable ncDataset, long[] oid) {
                                             ^
  symbol:   class Variable
  location: class NC2Dataset
NC2Datatype.java:20: error: package ucar.ma2 does not exist
import ucar.ma2.DataType;
               ^
NC2Datatype.java:32: error: cannot find symbol
    DataType nativeType = null;
    ^
  symbol:   class DataType
  location: class NC2Datatype
NC2Datatype.java:79: error: cannot find symbol
    public NC2Datatype(DataType theType) {
                       ^
  symbol:   class DataType
  location: class NC2Datatype
NC2Datatype.java:97: error: cannot find symbol
    public static Object allocateArray(DataType dtype, int size)
                                       ^
  symbol:   class DataType
  location: class NC2Datatype
NC2File.java:30: error: package ucar.nc2 does not exist
import ucar.nc2.NetcdfFile;
               ^
NC2File.java:31: error: package ucar.nc2 does not exist
import ucar.nc2.Variable;
               ^
NC2File.java:66: error: cannot find symbol
    private NetcdfFile ncFile;
            ^
  symbol:   class NetcdfFile
  location: class NC2File
NC2File.java:250: error: cannot find symbol
    public NetcdfFile getNetcdfFile() {
           ^
  symbol:   class NetcdfFile
  location: class NC2File
NC2Group.java:22: error: package ucar.nc2 does not exist
import ucar.nc2.NetcdfFile;
               ^
NC2File.java:369: error: package ucar.nc2 does not exist
            ucar.nc2.Attribute netcdfAttr) {
                    ^
NC2Dataset.java:65: warning: [deprecation] ScalarDS(FileFormat,String,String,long[]) in ScalarDS has been deprecated
        super(fileFormat, ncDataset.getName(), HObject.separator, oid);
        ^
NC2Dataset.java:113: error: package ucar.ma2 does not exist
        ucar.ma2.Array ncArray = null;
                ^
NC2Dataset.java:174: error: package ucar.nc2 does not exist
        ucar.nc2.Attribute ncAttr = null;
                ^
NC2Dataset.java:176: error: package ucar.nc2 does not exist
            ncAttr = (ucar.nc2.Attribute) ncAttrList.get(i);
                              ^
NC2Dataset.java:227: error: cannot find symbol
        isText = nativeDataset.getDataType().equals(DataType.STRING);
                                                    ^
  symbol:   variable DataType
  location: class NC2Dataset
NC2Dataset.java:228: error: cannot find symbol
        boolean isChar = nativeDataset.getDataType().equals(DataType.CHAR);
                                                            ^
  symbol:   variable DataType
  location: class NC2Dataset
NC2Datatype.java:105: error: cannot find symbol
        if (dtype.equals(DataType.BYTE)) {
                         ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:108: error: cannot find symbol
        else if (dtype.equals(DataType.SHORT)) {
                              ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:111: error: cannot find symbol
        else if (dtype.equals(DataType.INT)) {
                              ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:114: error: cannot find symbol
        else if (dtype.equals(DataType.LONG)) {
                              ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:117: error: cannot find symbol
        else if (dtype.equals(DataType.FLOAT)) {
                              ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:120: error: cannot find symbol
        else if (dtype.equals(DataType.DOUBLE)) {
                              ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:123: error: cannot find symbol
        else if (dtype.equals(DataType.STRING)) {
                              ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:144: error: cannot find symbol
        if (nativeType.equals(DataType.BYTE)) {
                              ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:148: error: cannot find symbol
        else if (nativeType.equals(DataType.SHORT)) {
                                   ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:152: error: cannot find symbol
        else if (nativeType.equals(DataType.INT)) {
                                   ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:156: error: cannot find symbol
        else if (nativeType.equals(DataType.LONG)) {
                                   ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:160: error: cannot find symbol
        else if (nativeType.equals(DataType.FLOAT)) {
                                   ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:164: error: cannot find symbol
        else if (nativeType.equals(DataType.DOUBLE)) {
                                   ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:168: error: cannot find symbol
        else if (nativeType.equals(DataType.STRING)) {
                                   ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:196: error: cannot find symbol
                nativeType = DataType.BYTE;
                             ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:199: error: cannot find symbol
                nativeType = DataType.SHORT;
                             ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:202: error: cannot find symbol
                nativeType = DataType.INT;
                             ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:205: error: cannot find symbol
                nativeType = DataType.LONG;
                             ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:210: error: cannot find symbol
                nativeType = DataType.FLOAT;
                             ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:213: error: cannot find symbol
                nativeType = DataType.DOUBLE;
                             ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2Datatype.java:217: error: cannot find symbol
            nativeType = DataType.STRING;
                         ^
  symbol:   variable DataType
  location: class NC2Datatype
NC2File.java:87: error: cannot find symbol
            ncFile = new NetcdfFile(fullFileName);
                         ^
  symbol:   class NetcdfFile
  location: class NC2File
NC2File.java:221: error: cannot find symbol
        Variable ncDataset = null;
        ^
  symbol:   class Variable
  location: class NC2File
NC2File.java:225: error: cannot find symbol
            ncDataset = (Variable) it.next();
                         ^
  symbol:   class Variable
  location: class NC2File
NC2Group.java:65: warning: [deprecation] Group(FileFormat,String,String,Group,long[]) in Group has been deprecated
        super(fileFormat, name, path, parent, ((theID == null) ? DEFAULT_OID
        ^
NC2Group.java:89: error: cannot find symbol
        NetcdfFile ncFile = theFile.getNetcdfFile();
        ^
  symbol:   class NetcdfFile
  location: class NC2Group
NC2Group.java:99: error: package ucar.nc2 does not exist
        ucar.nc2.Attribute netcdfAttr = null;
                ^
NC2Group.java:101: error: package ucar.nc2 does not exist
            netcdfAttr = (ucar.nc2.Attribute) netcdfAttributeList.get(i);
                                  ^
46 errors
2 warnings
make[3]: *** [all] Error 1
make[3]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/object/nc2'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/object'
making all in ./hdf/view
make[2]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/view'
subdirs is  NULL
/usr/lib/jvm/java/bin/javac -g -deprecation -d ../../../lib -classpath /usr/lib/jvm/java/jre/lib/rt.jar:/builddir/build/BUILD/hdf-java-2.11.0:../../../lib/slf4j-api-1.7.5.jar:../../../lib/slf4j-nop-1.7.5.jar:../../../lib:.  DataOptionDialog.java HDFView.java ImageView.java TableView.java TextView.java TreeView.java ViewManager.java ViewProperties.java NewAttributeDialog.java NewDatasetDialog.java NewDatatypeDialog.java NewLinkDialog.java NewTableDataDialog.java NewFileDialog.java NewGroupDialog.java DefaultFileFilter.java FileConversionDialog.java MathConversionDialog.java NewImageDialog.java UserOptionsDialog.java Tools.java Chart.java DataView.java DefaultImageView.java DefaultMetaDataView.java DefaultPaletteView.java DefaultTableView.java DefaultTextView.java DefaultTreeView.java MetaDataView.java HelpView.java PaletteView.java
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
make[2]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf/view'
make[1]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/ncsa/hdf'
+ popd
~/build/BUILD/hdf-java-2.11.0
+ make natives jhdf-packages jhdf5-packages jhdfobj-packages jhdfview-packages
cd native; \
make 
make[1]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/native'
make[2]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/native'
cd hdflib; \
make ; 
make[3]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/native/hdflib'
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfstructsutil.o hdfstructsutil.c
hdfstructsutil.c: In function 'getChunkInfo':
hdfstructsutil.c:390:10: warning: variable 'bval' set but not used [-Wunused-but-set-variable]
 jboolean bval;
          ^
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfImp.o hdfImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfvgroupImp.o hdfvgroupImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfvdataImp.o hdfvdataImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfsdsImp.o hdfsdsImp.c
hdfsdsImp.c: In function 'Java_ncsa_hdf_hdflib_HDFLibrary_SDsetcompress':
hdfsdsImp.c:1221:18: warning: variable 'bval' set but not used [-Wunused-but-set-variable]
         jboolean bval;
                  ^
hdfsdsImp.c: In function 'Java_ncsa_hdf_hdflib_HDFLibrary_SDsetchunk':
hdfsdsImp.c:1381:10: warning: variable 'bval' set but not used [-Wunused-but-set-variable]
 jboolean bval;
          ^
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfanImp.o hdfanImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfdfanImp.o hdfdfanImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfdfsdImp.o hdfdfsdImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfr24Imp.o hdfr24Imp.c
hdfr24Imp.c: In function 'Java_ncsa_hdf_hdflib_HDFLibrary_DF24setcompress':
hdfr24Imp.c:225:14: warning: variable 'bval' set but not used [-Wunused-but-set-variable]
     jboolean bval;
              ^
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfdfpalImp.o hdfdfpalImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfr8Imp.o hdfr8Imp.c
hdfr8Imp.c: In function 'Java_ncsa_hdf_hdflib_HDFLibrary_DFR8setcompress':
hdfr8Imp.c:244:14: warning: variable 'bval' set but not used [-Wunused-but-set-variable]
     jboolean bval;
              ^
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfgrImp.o hdfgrImp.c
hdfgrImp.c: In function 'Java_ncsa_hdf_hdflib_HDFLibrary_GRsetcompress':
hdfgrImp.c:611:14: warning: variable 'bval' set but not used [-Wunused-but-set-variable]
     jboolean bval;
              ^
hdfgrImp.c: In function 'Java_ncsa_hdf_hdflib_HDFLibrary_GRgetcompress':
hdfgrImp.c:635:14: warning: variable 'bval' set but not used [-Wunused-but-set-variable]
     jboolean bval;
              ^
hdfgrImp.c: In function 'Java_ncsa_hdf_hdflib_HDFLibrary_GRsetchunk':
hdfgrImp.c:660:10: warning: variable 'bval' set but not used [-Wunused-but-set-variable]
 jboolean bval;
          ^
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfheImp.o hdfheImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfdfuImp.o hdfdfuImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfhxImp.o hdfhxImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfvfImp.o hdfvfImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfvhImp.o hdfvhImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfvqImp.o hdfvqImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfvsqImp.o hdfvsqImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfexceptionImp.o hdfexceptionImp.c
hdfexceptionImp.c: In function 'h4buildException':
hdfexceptionImp.c:40:5: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
 int rval;
     ^
hdfexceptionImp.c: In function 'h4NotImplemented':
hdfexceptionImp.c:68:5: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
 int rval;
     ^
hdfexceptionImp.c: In function 'h4outOfMemory':
hdfexceptionImp.c:97:5: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
 int rval;
     ^
hdfexceptionImp.c: In function 'h4JNIFatalError':
hdfexceptionImp.c:128:5: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
 int rval;
     ^
hdfexceptionImp.c: In function 'h4raiseException':
hdfexceptionImp.c:156:5: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
 int rval;
     ^
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfdfcompImp.o hdfdfcompImp.c
hdfdfcompImp.c: In function 'Java_ncsa_hdf_hdflib_HDFDeprecated_DFputcomp':
hdfdfcompImp.c:87:14: warning: variable 'bval' set but not used [-Wunused-but-set-variable]
     jboolean bval;
              ^
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -I. -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/hdf   -c -o hdfnativeImp.o hdfnativeImp.c
mkdir -p ../../lib/linux;
gcc -shared -Wl,-z,relro  -o ../../lib/linux/libjhdf.so  hdfstructsutil.o hdfImp.o hdfvgroupImp.o hdfvdataImp.o hdfsdsImp.o hdfanImp.o hdfdfanImp.o hdfdfsdImp.o hdfr24Imp.o hdfdfpalImp.o hdfr8Imp.o hdfgrImp.o hdfheImp.o hdfdfuImp.o hdfhxImp.o hdfvfImp.o hdfvhImp.o hdfvqImp.o hdfvsqImp.o hdfexceptionImp.o hdfdfcompImp.o hdfnativeImp.o  /usr/lib64/hdf/libmfhdf.a /usr/lib64/hdf/libdf.a  -lz -ljpeg -lm
make[3]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/native/hdflib'
make[2]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/native'
make[2]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/native'
cd hdf5lib; \
make ; 
make[3]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/native/hdf5lib'
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o exceptionImp.o exceptionImp.c
exceptionImp.c: In function 'h5libraryError':
exceptionImp.c:406:15: warning: unused variable 'num_errs' [-Wunused-variable]
     int       num_errs = 0;
               ^
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o h5Constants.o h5Constants.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o h5Imp.o h5Imp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o h5aImp.o h5aImp.c
h5aImp.c: In function 'H5AwriteVL_num':
h5aImp.c:281:25: warning: enumeration value 'H5T_NO_CLASS' not handled in switch [-Wswitch]
                         switch (basetclass) {
                         ^
h5aImp.c:281:25: warning: enumeration value 'H5T_TIME' not handled in switch [-Wswitch]
h5aImp.c:281:25: warning: enumeration value 'H5T_BITFIELD' not handled in switch [-Wswitch]
h5aImp.c:281:25: warning: enumeration value 'H5T_OPAQUE' not handled in switch [-Wswitch]
h5aImp.c:281:25: warning: enumeration value 'H5T_COMPOUND' not handled in switch [-Wswitch]
h5aImp.c:281:25: warning: enumeration value 'H5T_REFERENCE' not handled in switch [-Wswitch]
h5aImp.c:281:25: warning: enumeration value 'H5T_ENUM' not handled in switch [-Wswitch]
h5aImp.c:281:25: warning: enumeration value 'H5T_VLEN' not handled in switch [-Wswitch]
h5aImp.c:281:25: warning: enumeration value 'H5T_ARRAY' not handled in switch [-Wswitch]
h5aImp.c:281:25: warning: enumeration value 'H5T_NCLASSES' not handled in switch [-Wswitch]
h5aImp.c:225:21: warning: unused variable 'basesid' [-Wunused-variable]
     hid_t           basesid = -1;
                     ^
h5aImp.c:206:15: warning: unused variable 'j' [-Wunused-variable]
     jint    i,j;
               ^
h5aImp.c: In function 'Java_ncsa_hdf_hdf5lib_H5_H5AreadVL':
h5aImp.c:793:12: warning: variable 'isStr' set but not used [-Wunused-but-set-variable]
     htri_t isStr;
            ^
h5aImp.c: In function 'H5AreadVL_comp':
h5aImp.c:885:17: warning: unused variable 'max_len' [-Wunused-variable]
     size_t      max_len = 0;
                 ^
h5aImp.c: In function 'H5AwriteVL_num':
h5aImp.c:205:13: warning: 'wsdata' may be used uninitialized in this function [-Wmaybe-uninitialized]
     char  **wsdata;
             ^
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o h5dImp.o h5dImp.c
h5dImp.c: In function 'Java_ncsa_hdf_hdf5lib_H5_H5Dchdir_1ext':
h5dImp.c:215:5: warning: implicit declaration of function 'chdir' [-Wimplicit-function-declaration]
     status = CHDIR( file );
     ^
h5dImp.c: In function 'Java_ncsa_hdf_hdf5lib_H5_H5Dgetdir_1ext':
h5dImp.c:245:5: warning: implicit declaration of function 'getcwd' [-Wimplicit-function-declaration]
     GETCWD( (char*)aName, (size_t)buf_size);
     ^
h5dImp.c: In function 'Java_ncsa_hdf_hdf5lib_H5_H5DwriteNotString':
h5dImp.c:1382:1: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long unsigned int' [-Wformat=]
 printf("H5AwriteVL_num: n=%d of len %d\n", n, sizeof(buf));
 ^
h5dImp.c:1411:1: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
 printf("H5AwriteVL_num: count=%d obj_len=%d of utf8_len %d\n", j, length, sizeof(utf8));
 ^
h5dImp.c:1667:1: warning: format '%d' expects argument of type 'int', but argument 2 has type 'size_t' [-Wformat=]
 printf("vlen:type size=%d, %s\n", size, utf8);
 ^
h5dImp.c:1668:25: warning: enumeration value 'H5T_NO_CLASS' not handled in switch [-Wswitch]
                         switch (basetclass) {
                         ^
h5dImp.c:1668:25: warning: enumeration value 'H5T_TIME' not handled in switch [-Wswitch]
h5dImp.c:1668:25: warning: enumeration value 'H5T_STRING' not handled in switch [-Wswitch]
h5dImp.c:1668:25: warning: enumeration value 'H5T_BITFIELD' not handled in switch [-Wswitch]
h5dImp.c:1668:25: warning: enumeration value 'H5T_OPAQUE' not handled in switch [-Wswitch]
h5dImp.c:1668:25: warning: enumeration value 'H5T_COMPOUND' not handled in switch [-Wswitch]
h5dImp.c:1668:25: warning: enumeration value 'H5T_REFERENCE' not handled in switch [-Wswitch]
h5dImp.c:1668:25: warning: enumeration value 'H5T_ENUM' not handled in switch [-Wswitch]
h5dImp.c:1668:25: warning: enumeration value 'H5T_VLEN' not handled in switch [-Wswitch]
h5dImp.c:1668:25: warning: enumeration value 'H5T_ARRAY' not handled in switch [-Wswitch]
h5dImp.c:1668:25: warning: enumeration value 'H5T_NCLASSES' not handled in switch [-Wswitch]
h5dImp.c:1417:13: warning: enumeration value 'H5T_NO_CLASS' not handled in switch [-Wswitch]
             switch (tclass) {
             ^
h5dImp.c:1417:13: warning: enumeration value 'H5T_TIME' not handled in switch [-Wswitch]
h5dImp.c:1417:13: warning: enumeration value 'H5T_BITFIELD' not handled in switch [-Wswitch]
h5dImp.c:1417:13: warning: enumeration value 'H5T_OPAQUE' not handled in switch [-Wswitch]
h5dImp.c:1417:13: warning: enumeration value 'H5T_NCLASSES' not handled in switch [-Wswitch]
h5dImp.c:1356:21: warning: unused variable 'sid' [-Wunused-variable]
     hid_t           sid = H5Aget_space(mem_type_id);
                     ^
h5dImp.c:1339:13: warning: unused variable 'j' [-Wunused-variable]
     jint    j;
             ^
h5dImp.c: In function 'Java_ncsa_hdf_hdf5lib_H5_H5Dread_1reg_1ref':
h5dImp.c:2108:11: warning: unused variable 'region' [-Wunused-variable]
     hid_t region = -1;
           ^
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o h5eImp.o h5eImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o h5fImp.o h5fImp.c
h5fImp.c: In function 'Java_ncsa_hdf_hdf5lib_H5_H5export_1dataset':
h5fImp.c:661:12: warning: unused variable 'status' [-Wunused-variable]
     herr_t status = -1;
            ^
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o h5gImp.o h5gImp.c
h5gImp.c: In function 'obj_info_all':
h5gImp.c:1016:11: warning: unused variable 'oid' [-Wunused-variable]
     hid_t oid=-1;
           ^
h5gImp.c:1015:9: warning: unused variable 'type' [-Wunused-variable]
     int type = -1;
         ^
h5gImp.c: In function 'obj_info_max':
h5gImp.c:1053:9: warning: unused variable 'type' [-Wunused-variable]
     int type = -1;
         ^
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o h5iImp.o h5iImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o h5lImp.o h5lImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o h5oImp.o h5oImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o h5pImp.o h5pImp.c
h5pImp.c: In function 'Java_ncsa_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id':
h5pImp.c:1902:18: warning: variable 'rank' set but not used [-Wunused-but-set-variable]
     int          rank;
                  ^
h5pImp.c:1901:18: warning: unused variable 'i' [-Wunused-variable]
     int          i = 0;
                  ^
h5pImp.c:1899:18: warning: variable 'str' set but not used [-Wunused-but-set-variable]
     jstring      str;
                  ^
h5pImp.c: In function 'Java_ncsa_hdf_hdf5lib_H5_H5Pget_1class_1name':
h5pImp.c:2445:5: warning: implicit declaration of function 'H5free_memory' [-Wimplicit-function-declaration]
     H5free_memory(c_str);
     ^
h5pImp.c: In function 'Java_ncsa_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2':
h5pImp.c:2813:14: warning: variable 'str' set but not used [-Wunused-but-set-variable]
     jstring  str;
              ^
h5pImp.c:2805:14: warning: unused variable 'i' [-Wunused-variable]
     int      i = 0;
              ^
h5pImp.c: In function 'Java_ncsa_hdf_hdf5lib_H5_H5Pset_1fapl_1multi':
h5pImp.c:4104:23: warning: unused variable 'length' [-Wunused-variable]
                 jsize length = ENVPTR->GetStringUTFLength(ENVPAR obj);
                       ^
h5pImp.c: In function 'Java_ncsa_hdf_hdf5lib_H5_H5Pset_1fill_1value':
h5pImp.c:739:12: warning: 'byteP' may be used uninitialized in this function [-Wmaybe-uninitialized]
     status = H5Pset_fill_value((hid_t)plist_id, (hid_t)type_id, byteP);
            ^
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o h5rImp.o h5rImp.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o h5sImp.o h5sImp.c
h5sImp.c: In function 'Java_ncsa_hdf_hdf5lib_H5__1H5Screate_1simple':
h5sImp.c:134:9: warning: 'mrank' may be used uninitialized in this function [-Wmaybe-uninitialized]
         for (i = 0; i < mrank; i++) {
         ^
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o h5tImp.o h5tImp.c
h5tImp.c: In function 'Java_ncsa_hdf_hdf5lib_H5_H5Tget_1member_1name':
h5tImp.c:780:5: warning: implicit declaration of function 'H5free_memory' [-Wimplicit-function-declaration]
     H5free_memory(name);
     ^
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o nativeData.o nativeData.c
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o h5util.o h5util.c
h5util.c: In function 'h5str_sprintf':
h5util.c:156:9: warning: unused variable 'bdata_print' [-Wunused-variable]
     int bdata_print = 0;
         ^
h5util.c:149:21: warning: unused variable 'len' [-Wunused-variable]
     int             len;
                     ^
h5util.c:147:21: warning: unused variable 'i' [-Wunused-variable]
     int             i;
                     ^
h5util.c: In function 'h5str_print_region_data_blocks':
h5util.c:489:18: warning: unused variable 'region_flags' [-Wunused-variable]
     unsigned int region_flags; /* buffer extent flags */
                  ^
h5util.c: In function 'h5str_dump_region_blocks_data':
h5util.c:599:13: warning: unused variable 'i' [-Wunused-variable]
         int i;
             ^
h5util.c:587:16: warning: unused variable 'tmp_str' [-Wunused-variable]
     char       tmp_str[256];
                ^
h5util.c: In function 'h5str_dump_region_blocks':
h5util.c:638:16: warning: unused variable 'type_id' [-Wunused-variable]
     hid_t      type_id = -1;
                ^
h5util.c:637:16: warning: unused variable 'dtype' [-Wunused-variable]
     hid_t      dtype = -1;
                ^
h5util.c: In function 'h5str_print_region_data_points':
h5util.c:714:21: warning: unused variable 'tmp_str' [-Wunused-variable]
     char            tmp_str[256];
                     ^
h5util.c:711:21: warning: unused variable 'region_flags' [-Wunused-variable]
     unsigned int    region_flags; /* buffer extent flags */
                     ^
h5util.c:708:21: warning: unused variable 'indx' [-Wunused-variable]
     unsigned        indx;
                     ^
h5util.c: In function 'h5str_dump_region_points_data':
h5util.c:785:13: warning: unused variable 'i' [-Wunused-variable]
         int i;
             ^
h5util.c:771:16: warning: unused variable 'tmp_str' [-Wunused-variable]
     char       tmp_str[256];
                ^
h5util.c: In function 'h5str_dump_region_points':
h5util.c:825:16: warning: unused variable 'type_id' [-Wunused-variable]
     hid_t      type_id = -1;
                ^
h5util.c:824:16: warning: unused variable 'dtype' [-Wunused-variable]
     hid_t      dtype = -1;
                ^
h5util.c: In function 'h5str_render_bin_output':
h5util.c:1162:32: warning: unused variable 'item_size' [-Wunused-variable]
                         size_t item_size       = size;    /* size of items in bytes */
                                ^
h5util.c:1243:29: warning: unused variable 'i' [-Wunused-variable]
                     hsize_t i, dims[H5S_MAX_RANK], temp_nelmts, nelmts;
                             ^
h5util.c:1271:34: warning: unused variable 'i' [-Wunused-variable]
                     unsigned int i;
                                  ^
h5util.c: In function 'render_bin_output_region_data_blocks':
h5util.c:1361:18: warning: unused variable 'numindex' [-Wunused-variable]
     hsize_t      numindex;
                  ^
h5util.c: In function 'render_bin_output_region_data_points':
h5util.c:1528:14: warning: unused variable 'jndx' [-Wunused-variable]
     int      jndx;
              ^
h5util.c: In function 'h5str_dump_simple_dset':
h5util.c:1642:25: warning: unused variable 'flags' [-Wunused-variable]
     unsigned int        flags;                    /* buffer extent flags */
                         ^
h5util.c: In function 'h5tools_dump_simple_data':
h5util.c:1804:20: warning: unused variable 'bytes_wrote' [-Wunused-variable]
             size_t bytes_wrote     = 0;    /* # of bytes written   */
                    ^
h5util.c:1803:20: warning: variable 'bytes_in' set but not used [-Wunused-but-set-variable]
             size_t bytes_in        = 0;    /* # of bytes to write  */
                    ^
h5util.c:1797:24: warning: unused variable 'type_class' [-Wunused-variable]
     H5T_class_t        type_class;
                        ^
gcc -shared -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -D_FILE_OFFSET_BITS=64  -I. -I/usr/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux   -c -o h5zImp.o h5zImp.c
mkdir -p ../../lib/linux;
gcc -shared -Wl,-z,relro  -o ../../lib/linux/libjhdf5.so  exceptionImp.o h5Constants.o h5Imp.o h5aImp.o h5dImp.o h5eImp.o h5fImp.o h5gImp.o h5iImp.o h5lImp.o h5oImp.o h5pImp.o h5rImp.o h5sImp.o h5tImp.o nativeData.o h5util.o h5zImp.o -lhdf5 -lz  -lm
make[3]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/native/hdf5lib'
make[2]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/native'
make[1]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/native'
make[1]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0'
/usr/lib/jvm/java/bin/jar cf ./lib/jhdf.jar -C ./lib ncsa/hdf/hdflib
make[1]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0'
/usr/lib/jvm/java/bin/jar cf ./lib/jhdf5.jar -C ./lib ncsa/hdf/hdf5lib
/usr/lib/jvm/java/bin/jar cf ./lib/jhdfobj.jar -C ./lib ncsa/hdf/object
make[1]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0'
/usr/lib/jvm/java/bin/jar cf ./lib/jhdf4obj.jar -C ./lib ncsa/hdf/object/h4
make[1]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0'
make[1]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0'
/usr/lib/jvm/java/bin/jar cf ./lib/jhdf5obj.jar -C ./lib ncsa/hdf/object/h5
make[1]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0'
/usr/lib/jvm/java/bin/jar cf ./lib/jhdfview.jar -C ./lib ./ncsa/hdf/view ./ncsa/hdf/view/icons/*.gif ./ncsa/hdf/view/*.html
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.QrhXlY
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64
++ dirname /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64
+ cd hdf-java-2.11.0
+ install -dm 755 /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/lib/java
+ install -pm 0644 lib/jhdf5.jar /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/lib/java/jhdf5.jar
+ install -dm 755 /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/lib64/jhdf5
+ install -m 744 lib/linux/libjhdf5.so /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/lib64/jhdf5
+ install -dm 755 /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/lib/java
+ install -pm 0644 lib/jhdf.jar /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/lib/java/jhdf.jar
+ install -dm 755 /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/lib64/jhdf
+ install -m 744 lib/linux/libjhdf.so /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/lib64/jhdf
+ install -dm 755 /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/java
+ install -pm 0644 lib/jhdfobj.jar /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/java/jhdfobj.jar
+ install -pm 0644 lib/jhdf4obj.jar /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/java/jhdf4obj.jar
+ install -pm 0644 lib/jhdf5obj.jar /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/java/jhdf5obj.jar
+ install -dm 755 /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/java
+ install -pm 0644 lib/jhdfview.jar /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/java/jhdfview.jar
+ install -dm 755 /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/bin
+ install -m 755 /builddir/build/SOURCES/hdfview /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/bin/hdfview
+ for i in 16 22 32 48
+ mkdir -p icons/16x16/apps
+ mkdir -p /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/icons/hicolor/16x16/apps
+ mkdir -p /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/icons/hicolor/16x16/mimetypes
+ convert -resize 16x16 ncsa/hdf/view/icons/hdf_large.gif icons/16x16/apps/hdfview.png
+ install -pm 0644 icons/16x16/apps/hdfview.png /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/icons/hicolor/16x16/apps/hdfview.png
+ install -pm 0644 icons/16x16/apps/hdfview.png /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/icons/hicolor/16x16/mimetypes/application-x-hdf.png
+ for i in 16 22 32 48
+ mkdir -p icons/22x22/apps
+ mkdir -p /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/icons/hicolor/22x22/apps
+ mkdir -p /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/icons/hicolor/22x22/mimetypes
+ convert -resize 22x22 ncsa/hdf/view/icons/hdf_large.gif icons/22x22/apps/hdfview.png
+ install -pm 0644 icons/22x22/apps/hdfview.png /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/icons/hicolor/22x22/apps/hdfview.png
+ install -pm 0644 icons/22x22/apps/hdfview.png /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/icons/hicolor/22x22/mimetypes/application-x-hdf.png
+ for i in 16 22 32 48
+ mkdir -p icons/32x32/apps
+ mkdir -p /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/icons/hicolor/32x32/apps
+ mkdir -p /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/icons/hicolor/32x32/mimetypes
+ convert -resize 32x32 ncsa/hdf/view/icons/hdf_large.gif icons/32x32/apps/hdfview.png
+ install -pm 0644 icons/32x32/apps/hdfview.png /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/icons/hicolor/32x32/apps/hdfview.png
+ install -pm 0644 icons/32x32/apps/hdfview.png /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/icons/hicolor/32x32/mimetypes/application-x-hdf.png
+ for i in 16 22 32 48
+ mkdir -p icons/48x48/apps
+ mkdir -p /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/icons/hicolor/48x48/apps
+ mkdir -p /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/icons/hicolor/48x48/mimetypes
+ convert -resize 48x48 ncsa/hdf/view/icons/hdf_large.gif icons/48x48/apps/hdfview.png
+ install -pm 0644 icons/48x48/apps/hdfview.png /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/icons/hicolor/48x48/apps/hdfview.png
+ install -pm 0644 icons/48x48/apps/hdfview.png /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/icons/hicolor/48x48/mimetypes/application-x-hdf.png
+ mkdir -p /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/applications
+ desktop-file-install --dir /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/applications /builddir/build/SOURCES/hdfview.desktop
+ mkdir -p /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/mime/packages
+ install -p -D -m 644 /builddir/build/SOURCES/hdfview.xml /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/mime/packages/hdfview.xml
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/hdf-java-2.11.0
extracting debug info from /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/lib64/jhdf/libjhdf.so
extracting debug info from /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/lib64/jhdf5/libjhdf5.so
/usr/lib/rpm/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
1985 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.3O4IY5
+ umask 022
+ cd /builddir/build/BUILD
+ cd hdf-java-2.11.0
+ make tests
make[1]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/test'
subdirs is  hdf5lib object
making all in ./hdf5lib
make[2]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/test/hdf5lib'
subdirs is  NULL
/usr/lib/jvm/java/bin/javac -g -deprecation -d ../../lib -classpath /usr/lib/jvm/java/jre/lib/rt.jar:/builddir/build/BUILD/hdf-java-2.11.0:../../lib/junit.jar:../../lib:.  TestH5.java TestH5E.java TestH5Edefault.java TestH5Eregister.java TestH5Fparams.java TestH5Fbasic.java TestH5F.java TestH5Gbasic.java TestH5G.java TestH5Giterate.java TestH5Sbasic.java TestH5S.java TestH5Tparams.java TestH5Tbasic.java TestH5T.java TestH5Dparams.java TestH5Dplist.java TestH5D.java TestH5Lparams.java TestH5Lbasic.java TestH5Lcreate.java TestH5R.java TestH5P.java TestH5PData.java TestH5Pfapl.java TestH5A.java TestH5Oparams.java TestH5Obasic.java TestH5Ocreate.java TestH5Ocopy.java TestH5Z.java TestAll.java
TestH5Oparams.java:101: warning: [deprecation] H5Oset_comment(int,String) in H5 has been deprecated
        H5.H5Oset_comment(-1, "Bogus");
          ^
TestH5Oparams.java:111: warning: [deprecation] H5Oset_comment_by_name(int,String,String,int) in H5 has been deprecated
        H5.H5Oset_comment_by_name(-1, "Bogus", null, -1);
          ^
TestH5Oparams.java:116: warning: [deprecation] H5Oset_comment_by_name(int,String,String,int) in H5 has been deprecated
        H5.H5Oset_comment_by_name(-1, null, null, -1);
          ^
TestH5Ocreate.java:368: warning: [deprecation] H5Oset_comment(int,String) in H5 has been deprecated
            H5.H5Oset_comment(oid, "Test Comment");
              ^
TestH5Ocreate.java:393: warning: [deprecation] H5Oset_comment(int,String) in H5 has been deprecated
            H5.H5Oset_comment(oid, "Test Comment");
              ^
TestH5Ocreate.java:410: warning: [deprecation] H5Oset_comment(int,String) in H5 has been deprecated
            H5.H5Oset_comment(oid, null);
              ^
TestH5Ocreate.java:432: warning: [deprecation] H5Oset_comment_by_name(int,String,String,int) in H5 has been deprecated
            H5.H5Oset_comment_by_name(H5fid, "DS1", "Test Comment", HDF5Constants.H5P_DEFAULT);
              ^
TestH5Ocreate.java:454: warning: [deprecation] H5Oset_comment_by_name(int,String,String,int) in H5 has been deprecated
            H5.H5Oset_comment_by_name(H5fid, "DS1", "Test Comment", HDF5Constants.H5P_DEFAULT);
              ^
TestH5Ocreate.java:471: warning: [deprecation] H5Oset_comment_by_name(int,String,String,int) in H5 has been deprecated
            H5.H5Oset_comment_by_name(H5fid, "DS1", null, HDF5Constants.H5P_DEFAULT);
              ^
9 warnings
make[2]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/test/hdf5lib'
making all in ./object
make[2]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/test/object'
subdirs is  misc
making all in ./object/misc
make[3]: Entering directory `/builddir/build/BUILD/hdf-java-2.11.0/test/object/misc'
/usr/lib/jvm/java/bin/javac -classpath /usr/lib/jvm/java/jre/lib/rt.jar:/builddir/build/BUILD/hdf-java-2.11.0:../../../lib:../../../lib/slf4j-api-1.7.5.jar TestH4File.java
chmod u+x testh4file.sh
/usr/lib/jvm/java/bin/javac -classpath /usr/lib/jvm/java/jre/lib/rt.jar:/builddir/build/BUILD/hdf-java-2.11.0:../../../lib:../../../lib/slf4j-api-1.7.5.jar TestH5File.java
chmod u+x testh5file.sh
chmod u+x runtests.sh
make[3]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/test/object/misc'
/usr/lib/jvm/java/bin/javac -g -deprecation -d ../../lib -classpath /usr/lib/jvm/java/jre/lib/rt.jar:/builddir/build/BUILD/hdf-java-2.11.0:../../lib/junit.jar:../../lib/slf4j-api-1.7.5.jar:../../lib:.  AllH5ObjectTests.java AttributeTest.java CompoundDSTest.java DatasetTest.java DatatypeTest.java DataFormatTest.java FileFormatTest.java GroupTest.java H5BugFixTest.java H5CompoundDSTest.java H5DatatypeTest.java H5FileTest.java H5GroupTest.java H5ScalarDSTest.java H5TestFile.java HObjectTest.java MetadataTest.java ScalarDSTest.java
AttributeTest.java:81: warning: [deprecation] open(String,int) in FileFormat has been deprecated
        testFile = (H5File) H5FILE.open(H5TestFile.NAME_FILE_H5, FileFormat.WRITE);
                                  ^
DatasetTest.java:82: warning: [deprecation] open(String,int) in FileFormat has been deprecated
        testFile = (H5File) H5FILE.open(H5TestFile.NAME_FILE_H5, FileFormat.READ);
                                  ^
DataFormatTest.java:80: warning: [deprecation] open(String,int) in FileFormat has been deprecated
        testFile = (H5File) H5FILE.open(H5TestFile.NAME_FILE_H5, FileFormat.WRITE);
                                  ^
FileFormatTest.java:77: warning: [deprecation] open(String,int) in FileFormat has been deprecated
        testFile = H5FILE.open(H5TestFile.NAME_FILE_H5, FileFormat.WRITE);
                         ^
GroupTest.java:81: warning: [deprecation] open(String,int) in FileFormat has been deprecated
        testFile = (H5File) H5FILE.open(H5TestFile.NAME_FILE_H5, FileFormat.WRITE);
                                  ^
H5BugFixTest.java:114: warning: [deprecation] open(String,int) in FileFormat has been deprecated
        testFile = (H5File) H5FILE.open(H5TestFile.NAME_FILE_H5, FileFormat.WRITE);
                                  ^
H5CompoundDSTest.java:1377: warning: [deprecation] H5CompoundDS(FileFormat,String,String,long[]) in H5CompoundDS has been deprecated
            H5CompoundDS dset = new H5CompoundDS(file, names[idx], paths[idx], oid);
                                ^
H5DatatypeTest.java:143: warning: [deprecation] open(String,int) in FileFormat has been deprecated
        testFile = (H5File) H5FILE.open(H5TestFile.NAME_FILE_H5, FileFormat.WRITE);
                                  ^
H5DatatypeTest.java:401: warning: [deprecation] H5Topen(int,String) in H5 has been deprecated
            tid = H5.H5Topen(testFile.getFID(), TNAME);
                    ^
H5FileTest.java:789: warning: [deprecation] copy(HObject,Group) in FileFormat has been deprecated
                dstObj = (HObject) ((DefaultMutableTreeNode) testFile.copy(srcObj, root)).getUserObject();
                                                                     ^
H5FileTest.java:1322: warning: [deprecation] copy(HObject,Group) in FileFormat has been deprecated
                dstObj = (HObject) ((DefaultMutableTreeNode) testFile.copy(srcObj, root)).getUserObject();
                                                                     ^
H5GroupTest.java:100: warning: [deprecation] open(String,int) in FileFormat has been deprecated
        testFile = (H5File) H5FILE.open(H5TestFile.NAME_FILE_H5, FileFormat.WRITE);
                                  ^
H5GroupTest.java:470: warning: [deprecation] H5Group(FileFormat,String,String,Group,long[]) in H5Group has been deprecated
            final H5Group grp = new H5Group(file, names[idx], paths[idx], pgroup, oid);
                                ^
H5GroupTest.java:477: warning: [deprecation] H5Group(FileFormat,String,String,Group,long[]) in H5Group has been deprecated
        final H5Group grp = new H5Group(file, "NO_SUCH_DATASET", "NO_SUCH_PATH", pgroup, null);
                            ^
H5ScalarDSTest.java:150: warning: [deprecation] open(String,int) in FileFormat has been deprecated
        testFile = (H5File) H5FILE.open(H5TestFile.NAME_FILE_H5, FileFormat.WRITE);
                                  ^
H5ScalarDSTest.java:1424: warning: [deprecation] H5ScalarDS(FileFormat,String,String,long[]) in H5ScalarDS has been deprecated
            H5ScalarDS dset = new H5ScalarDS(file, names[idx], paths[idx], oid);
                              ^
H5ScalarDSTest.java:1449: warning: [deprecation] H5ScalarDS(FileFormat,String,String,long[]) in H5ScalarDS has been deprecated
        final H5ScalarDS dset = new H5ScalarDS(file, "NO_SUCH_DATASET", "NO_SUCH_PATH", null);
                                ^
MetadataTest.java:63: warning: [deprecation] open(String,int) in FileFormat has been deprecated
        testFile = (H5File) H5FILE.open(H5TestFile.NAME_FILE_H5, FileFormat.WRITE);
make[2]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/test/object'
                                  ^
ScalarDSTest.java:82: warning: [deprecation] open(String,int) in FileFormat has been deprecated
        testFile = (H5File) H5FILE.open(H5TestFile.NAME_FILE_H5, FileFormat.READ);
                                  ^
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
19 warnings
make[1]: Leaving directory `/builddir/build/BUILD/hdf-java-2.11.0/test'
+ exit 0
Processing files: jhdf5-2.11.0-1.el7.centos.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Xg9Tqy
+ umask 022
+ cd /builddir/build/BUILD
+ cd hdf-java-2.11.0
+ DOCDIR=/builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/doc/jhdf5-2.11.0
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/doc/jhdf5-2.11.0
+ cp -pr COPYING /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/doc/jhdf5-2.11.0
+ cp -pr Readme.txt /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/doc/jhdf5-2.11.0
+ exit 0
Provides: jhdf5 = 2.11.0-1.el7.centos jhdf5(x86-64) = 2.11.0-1.el7.centos libjhdf5.so()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libhdf5.so.8()(64bit) libm.so.6()(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Processing files: jhdf-2.11.0-1.el7.centos.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.hHhv30
+ umask 022
+ cd /builddir/build/BUILD
+ cd hdf-java-2.11.0
+ DOCDIR=/builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/doc/jhdf-2.11.0
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/doc/jhdf-2.11.0
+ cp -pr COPYING /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/doc/jhdf-2.11.0
+ cp -pr Readme.txt /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/doc/jhdf-2.11.0
+ exit 0
Provides: jhdf = 2.11.0-1.el7.centos jhdf(x86-64) = 2.11.0-1.el7.centos libjhdf.so()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libjpeg.so.62()(64bit) libjpeg.so.62(LIBJPEG_6.2)(64bit) libm.so.6()(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Processing files: jhdfobj-2.11.0-1.el7.centos.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.xw1FQt
+ umask 022
+ cd /builddir/build/BUILD
+ cd hdf-java-2.11.0
+ DOCDIR=/builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/doc/jhdfobj-2.11.0
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/doc/jhdfobj-2.11.0
+ cp -pr COPYING /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/doc/jhdfobj-2.11.0
+ cp -pr Readme.txt /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/doc/jhdfobj-2.11.0
+ exit 0
Provides: jhdfobj = 2.11.0-1.el7.centos
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: hdfview-2.11.0-1.el7.centos.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.LR3CYW
+ umask 022
+ cd /builddir/build/BUILD
+ cd hdf-java-2.11.0
+ DOCDIR=/builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/doc/hdfview-2.11.0
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/doc/hdfview-2.11.0
+ cp -pr COPYING /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/doc/hdfview-2.11.0
+ cp -pr Readme.txt /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/doc/hdfview-2.11.0
+ cp -pr docs /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64/usr/share/doc/hdfview-2.11.0
+ exit 0
Provides: hdfview = 2.11.0-1.el7.centos mimehandler(application/x-hdf) mimehandler(application/x-hdf5)
Requires(interp): /bin/sh /bin/sh /bin/sh
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(post): /bin/sh desktop-file-utils
Requires(postun): /bin/sh desktop-file-utils
Requires(posttrans): /bin/sh
Requires: /bin/sh
Processing files: jhdf5-debuginfo-2.11.0-1.el7.centos.x86_64
Provides: jhdf5-debuginfo = 2.11.0-1.el7.centos jhdf5-debuginfo(x86-64) = 2.11.0-1.el7.centos
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64
Wrote: /builddir/build/RPMS/jhdf5-2.11.0-1.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/jhdf-2.11.0-1.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/jhdfobj-2.11.0-1.el7.centos.noarch.rpm
Wrote: /builddir/build/RPMS/hdfview-2.11.0-1.el7.centos.noarch.rpm
Wrote: /builddir/build/RPMS/jhdf5-debuginfo-2.11.0-1.el7.centos.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.HpyISy
+ umask 022
+ cd /builddir/build/BUILD
+ cd hdf-java-2.11.0
+ rm -rf /builddir/build/BUILDROOT/jhdf5-2.11.0-1.el7.centos.x86_64
+ exit 0
Child return code was: 0
LEAVE do -->