Warning: Permanently added '54.226.126.223' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9963701-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 1.6 PID: 40827 Logging PID: 40829 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 9963701, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '52830369cc10499717e6f2b95bd9eefa3da85d5a', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/seaview', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'seaview', 'package_version': '5.1-2', 'project_dirname': 'mbp-gcc-16', 'project_name': 'mbp-gcc-16', 'project_owner': 'siddhesh', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/siddhesh/mbp-gcc-16/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'https://kojipkgs.fedoraproject.org/repos/f44-build-side-124978/latest/$basearch/', 'id': 'https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch', 'name': 'Additional repo https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch'}], 'sandbox': 'siddhesh/mbp-gcc-16--siddhesh', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'siddhesh', 'tags': [], 'task_id': '9963701-fedora-rawhide-aarch64', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/seaview /var/lib/copr-rpmbuild/workspace/workdir-6x97sn48/seaview --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/seaview', '/var/lib/copr-rpmbuild/workspace/workdir-6x97sn48/seaview', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-6x97sn48/seaview'... Running: git checkout 52830369cc10499717e6f2b95bd9eefa3da85d5a -- cmd: ['git', 'checkout', '52830369cc10499717e6f2b95bd9eefa3da85d5a', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-6x97sn48/seaview rc: 0 stdout: stderr: Note: switching to '52830369cc10499717e6f2b95bd9eefa3da85d5a'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 5283036 automatic import of seaview Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-6x97sn48/seaview rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading seaview_5.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o seaview_5.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/siddhesh/mbp-gcc-16/seaview/seaview_5.1.tar.gz/md5/57853e73a4e99b15fc1c1b8d50869d76/seaview_5.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 460k 100 460k 0 0 8911k 0 --:--:-- --:--:-- --:--:-- 9020k INFO: Reading stdout from command: md5sum seaview_5.1.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-6x97sn48/seaview/seaview.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-6x97sn48/seaview --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1767222147.947595 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.6 starting (python version = 3.13.7, NVR = mock-6.6-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-6x97sn48/seaview/seaview.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-6x97sn48/seaview --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1767222147.947595 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-6x97sn48/seaview/seaview.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 6.6 INFO: Mock Version: 6.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1767222147.947595/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-801f8eaa-41a1-4582-a10c-19e37b660591 INFO: Checking that 10f4daf9522b37f29661c11fac0605883f66ad94915274fbe234dfa230e55798 image matches host's architecture INFO: Copy content of container 10f4daf9522b37f29661c11fac0605883f66ad94915274fbe234dfa230e55798 to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1767222147.947595/root INFO: mounting 10f4daf9522b37f29661c11fac0605883f66ad94915274fbe234dfa230e55798 with podman image mount INFO: image 10f4daf9522b37f29661c11fac0605883f66ad94915274fbe234dfa230e55798 as /var/lib/containers/storage/overlay/5d2421df0c496afdb2c33f0d490ecb949583d15c1305eafeb44bb078f8c1b268/merged INFO: umounting image 10f4daf9522b37f29661c11fac0605883f66ad94915274fbe234dfa230e55798 (/var/lib/containers/storage/overlay/5d2421df0c496afdb2c33f0d490ecb949583d15c1305eafeb44bb078f8c1b268/merged) with podman image umount INFO: Removing image mock-bootstrap-801f8eaa-41a1-4582-a10c-19e37b660591 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1767222147.947595/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-1.fc44.aarch64 rpm-sequoia-1.10.0-1.fc44.aarch64 dnf5-5.3.0.0-3.fc44.aarch64 dnf5-plugins-5.3.0.0-3.fc44.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Additional repo https_kojipkgs_fedorap 100% | 3.1 KiB/s | 3.5 KiB | 00m01s Copr repository 100% | 1.4 KiB/s | 1.5 KiB | 00m01s fedora 100% | 8.8 KiB/s | 10.5 KiB | 00m01s Repositories loaded. 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https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.1 KiB zip aarch64 0:3.0-44.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 762.5 KiB zlib-ng-compat aarch64 0:2.3.2-2.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 133.3 KiB zstd aarch64 0:1.5.7-3.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 574.0 KiB Installing groups: Buildsystem building group Transaction Summary: Installing: 183 packages Total size of inbound packages is 65 MiB. 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libverto-0:0.3.2-11.fc43.aarc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [181/183] libselinux-utils-0:3.9-5.fc44 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [182/183] publicsuffix-list-dafsa-0:202 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [183/183] libssh-config-0:0.11.3-1.fc44 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [183/183] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction [ 1/185] Verify package files 100% | 729.0 B/s | 183.0 B | 00m00s >>> Running %pretrans scriptlet: filesystem-0:3.18-51.fc44.aarch64 >>> Finished %pretrans scriptlet: filesystem-0:3.18-51.fc44.aarch64 >>> [RPM] /var/lib/mock/fedora-rawhide-aarch64-1767222147.947595/root/var/cache/dnf/copr_base-247f8e86493b154b/packages/bzip2-1.0.8-21.fc44.aarch64.rpm: Header OpenPGP V4 RSA/SHA256 signature, key ID 52ac7d71d4a9769d: NOKEY [ 2/185] Prepare transaction 100% | 2.3 KiB/s | 183.0 B | 00m00s [ 3/185] Installing libgcc-0:16.0.0-0. 100% | 109.3 MiB/s | 223.9 KiB | 00m00s [ 4/185] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/185] Installing publicsuffix-list- 100% | 68.2 MiB/s | 69.8 KiB | 00m00s [ 6/185] Installing fedora-release-ide 100% | 0.0 B/s | 920.0 B | 00m00s [ 7/185] Installing fedora-repos-rawhi 100% | 2.4 MiB/s | 2.4 KiB | 00m00s [ 8/185] Installing fedora-gpg-keys-0: 100% | 29.1 MiB/s | 179.0 KiB | 00m00s [ 9/185] Installing fedora-repos-0:44- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/185] Installing fedora-release-com 100% | 24.3 MiB/s | 24.9 KiB | 00m00s [ 11/185] Installing fedora-release-0:4 100% | 17.3 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-27.fc44.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-27.fc44.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 12/185] Installing setup-0:2.15.0-27. 100% | 37.5 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 13/185] Installing filesystem-0:3.18- 100% | 2.0 MiB/s | 212.8 KiB | 00m00s [ 14/185] Installing gnulib-l10n-0:2024 100% | 129.3 MiB/s | 661.9 KiB | 00m00s [ 15/185] Installing coreutils-common-0 100% | 303.5 MiB/s | 11.2 MiB | 00m00s [ 16/185] Installing ncurses-base-0:6.5 100% | 49.3 MiB/s | 353.5 KiB | 00m00s [ 17/185] Installing bash-0:5.3.0-2.fc4 100% | 210.7 MiB/s | 8.4 MiB | 00m00s [ 18/185] Installing glibc-common-0:2.4 100% | 60.2 MiB/s | 1.3 MiB | 00m00s [ 19/185] Installing glibc-gconv-extra- 100% | 372.6 MiB/s | 18.6 MiB | 00m00s [ 20/185] Installing glibc-0:2.42.9000- 100% | 145.0 MiB/s | 6.4 MiB | 00m00s [ 21/185] Installing ncurses-libs-0:6.5 100% | 207.9 MiB/s | 1.2 MiB | 00m00s [ 22/185] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 23/185] Installing zlib-ng-compat-0:2 100% | 131.0 MiB/s | 134.1 KiB | 00m00s [ 24/185] Installing bzip2-libs-0:1.0.8 100% | 71.9 MiB/s | 73.6 KiB | 00m00s [ 25/185] Installing libgpg-error-0:1.5 100% | 48.6 MiB/s | 995.5 KiB | 00m00s [ 26/185] Installing libassuan-0:2.5.7- 100% | 106.3 MiB/s | 217.7 KiB | 00m00s [ 27/185] Installing libgcrypt-0:1.11.2 100% | 239.1 MiB/s | 1.2 MiB | 00m00s [ 28/185] Installing readline-0:8.3-2.f 100% | 276.2 MiB/s | 565.6 KiB | 00m00s [ 29/185] Installing gmp-1:6.3.0-4.fc44 100% | 214.9 MiB/s | 660.2 KiB | 00m00s [ 30/185] Installing xz-libs-1:5.8.1-4. 100% | 197.9 MiB/s | 202.6 KiB | 00m00s [ 31/185] Installing libuuid-0:2.41.3-8 100% | 68.7 MiB/s | 70.4 KiB | 00m00s [ 32/185] Installing popt-0:1.19-9.fc44 100% | 36.9 MiB/s | 151.3 KiB | 00m00s [ 33/185] Installing libzstd-0:1.5.7-3. 100% | 280.5 MiB/s | 861.7 KiB | 00m00s [ 34/185] Installing elfutils-libelf-0: 100% | 286.1 MiB/s | 1.1 MiB | 00m00s [ 35/185] Installing npth-0:1.8-3.fc44. 100% | 92.2 MiB/s | 94.5 KiB | 00m00s [ 36/185] Installing libblkid-0:2.41.3- 100% | 284.6 MiB/s | 291.4 KiB | 00m00s [ 37/185] Installing systemd-libs-0:259 100% | 307.8 MiB/s | 2.5 MiB | 00m00s [ 38/185] Installing libxcrypt-0:4.5.2- 100% | 134.8 MiB/s | 276.1 KiB | 00m00s [ 39/185] Installing libsepol-0:3.9-2.f 100% | 263.9 MiB/s | 810.6 KiB | 00m00s [ 40/185] Installing sqlite-libs-0:3.51 100% | 250.2 MiB/s | 1.5 MiB | 00m00s [ 41/185] Installing gnupg2-gpgconf-0:2 100% | 19.8 MiB/s | 323.8 KiB | 00m00s [ 42/185] Installing libattr-0:2.5.2-6. 100% | 67.8 MiB/s | 69.4 KiB | 00m00s [ 43/185] Installing libacl-0:2.3.2-4.f 100% | 67.0 MiB/s | 68.6 KiB | 00m00s [ 44/185] Installing libtasn1-0:4.20.0- 100% | 216.8 MiB/s | 222.0 KiB | 00m00s [ 45/185] Installing libunistring-0:1.1 100% | 291.0 MiB/s | 1.7 MiB | 00m00s [ 46/185] Installing libidn2-0:2.3.8-2. 100% | 55.3 MiB/s | 566.6 KiB | 00m00s [ 47/185] Installing crypto-policies-0: 100% | 22.0 MiB/s | 157.7 KiB | 00m00s [ 48/185] Installing gnupg2-verify-0:2. 100% | 19.8 MiB/s | 365.7 KiB | 00m00s [ 49/185] Installing dwz-0:0.16-2.fc44. 100% | 18.6 MiB/s | 323.8 KiB | 00m00s [ 50/185] Installing mpfr-0:4.2.2-2.fc4 100% | 184.8 MiB/s | 757.1 KiB | 00m00s [ 51/185] Installing gawk-0:5.3.2-2.fc4 100% | 103.2 MiB/s | 2.6 MiB | 00m00s [ 52/185] Installing libksba-0:1.6.7-4. 100% | 195.7 MiB/s | 400.8 KiB | 00m00s [ 53/185] Installing unzip-0:6.0-68.fc4 100% | 27.2 MiB/s | 473.8 KiB | 00m00s [ 54/185] Installing file-libs-0:5.46-8 100% | 594.0 MiB/s | 11.9 MiB | 00m00s [ 55/185] Installing file-0:5.46-8.fc44 100% | 8.6 MiB/s | 141.7 KiB | 00m00s [ 56/185] Installing diffutils-0:3.12-3 100% | 73.8 MiB/s | 1.6 MiB | 00m00s [ 57/185] Installing libcap-ng-0:0.8.5- 100% | 159.0 MiB/s | 162.8 KiB | 00m00s [ 58/185] Installing audit-libs-0:4.1.2 100% | 159.4 MiB/s | 489.6 KiB | 00m00s [ 59/185] Installing libsmartcols-0:2.4 100% | 220.1 MiB/s | 225.4 KiB | 00m00s [ 60/185] Installing libeconf-0:0.7.9-2 100% | 80.5 MiB/s | 82.5 KiB | 00m00s [ 61/185] Installing pam-libs-0:1.7.1-3 100% | 219.6 MiB/s | 224.8 KiB | 00m00s [ 62/185] Installing libcap-0:2.77-1.fc 100% | 27.9 MiB/s | 514.0 KiB | 00m00s [ 63/185] Installing alternatives-0:1.3 100% | 5.6 MiB/s | 91.8 KiB | 00m00s [ 64/185] Installing lua-libs-0:5.4.8-4 100% | 161.8 MiB/s | 331.4 KiB | 00m00s [ 65/185] Installing json-c-0:0.18-7.fc 100% | 136.5 MiB/s | 139.8 KiB | 00m00s [ 66/185] Installing libffi-0:3.5.2-1.f 100% | 153.6 MiB/s | 157.3 KiB | 00m00s [ 67/185] Installing p11-kit-0:0.25.8-1 100% | 93.1 MiB/s | 2.5 MiB | 00m00s [ 68/185] Installing p11-kit-trust-0:0. 100% | 21.6 MiB/s | 532.0 KiB | 00m00s [ 69/185] Installing ngtcp2-0:1.18.0-1. 100% | 167.4 MiB/s | 342.8 KiB | 00m00s [ 70/185] Installing zip-0:3.0-44.fc43. 100% | 39.4 MiB/s | 766.4 KiB | 00m00s [ 71/185] Installing gnupg2-keyboxd-0:2 100% | 38.2 MiB/s | 234.5 KiB | 00m00s [ 72/185] Installing libpsl-0:0.21.5-6. 100% | 130.3 MiB/s | 133.4 KiB | 00m00s [ 73/185] Installing liblastlog2-0:2.41 100% | 22.7 MiB/s | 139.7 KiB | 00m00s [ 74/185] Installing systemd-standalone 100% | 19.0 MiB/s | 330.2 KiB | 00m00s [ 75/185] Installing libusb1-0:1.0.29-4 100% | 88.2 MiB/s | 180.6 KiB | 00m00s [ 76/185] Installing libfdisk-0:2.41.3- 100% | 205.0 MiB/s | 419.8 KiB | 00m00s [ 77/185] Installing libxml2-0:2.12.10- 100% | 86.0 MiB/s | 1.9 MiB | 00m00s [ 78/185] Installing nettle-0:3.10.1-2. 100% | 187.5 MiB/s | 768.2 KiB | 00m00s [ 79/185] Installing gnutls-0:3.8.11-8. 100% | 297.7 MiB/s | 3.6 MiB | 00m00s [ 80/185] Installing bzip2-0:1.0.8-21.f 100% | 10.1 MiB/s | 175.6 KiB | 00m00s [ 81/185] Installing add-determinism-0: 100% | 90.0 MiB/s | 2.0 MiB | 00m00s [ 82/185] Installing cpio-0:2.15-6.fc44 100% | 52.2 MiB/s | 1.1 MiB | 00m00s [ 83/185] Installing libpkgconf-0:2.3.0 100% | 131.8 MiB/s | 135.0 KiB | 00m00s [ 84/185] Installing pkgconf-0:2.3.0-3. 100% | 7.0 MiB/s | 114.8 KiB | 00m00s [ 85/185] Installing ed-0:1.22.3-1.fc44 100% | 9.7 MiB/s | 159.2 KiB | 00m00s [ 86/185] Installing patch-0:2.8-3.fc44 100% | 16.1 MiB/s | 264.0 KiB | 00m00s [ 87/185] Installing libatomic-0:16.0.0 100% | 68.0 MiB/s | 69.6 KiB | 00m00s [ 88/185] Installing libstdc++-0:16.0.0 100% | 315.9 MiB/s | 2.8 MiB | 00m00s [ 89/185] Installing zstd-0:1.5.7-3.fc4 100% | 31.3 MiB/s | 577.6 KiB | 00m00s [ 90/185] Installing lz4-libs-0:1.10.0- 100% | 193.7 MiB/s | 198.4 KiB | 00m00s [ 91/185] Installing jansson-0:2.14-3.f 100% | 92.2 MiB/s | 94.4 KiB | 00m00s [ 92/185] Installing libgomp-0:16.0.0-0 100% | 288.9 MiB/s | 591.7 KiB | 00m00s [ 93/185] Installing libtool-ltdl-0:2.5 100% | 92.7 MiB/s | 95.0 KiB | 00m00s [ 94/185] Installing gdbm-libs-1:1.23-1 100% | 229.9 MiB/s | 235.4 KiB | 00m00s [ 95/185] Installing cyrus-sasl-lib-0:2 100% | 100.7 MiB/s | 2.4 MiB | 00m00s [ 96/185] Installing xxhash-libs-0:0.8. 100% | 85.3 MiB/s | 87.4 KiB | 00m00s [ 97/185] Installing libbrotli-0:1.2.0- 100% | 222.6 MiB/s | 911.8 KiB | 00m00s [ 98/185] Installing libnghttp2-0:1.68. 100% | 194.4 MiB/s | 199.1 KiB | 00m00s [ 99/185] Installing libnghttp3-0:1.14. 100% | 203.1 MiB/s | 208.0 KiB | 00m00s [100/185] Installing keyutils-libs-0:1. 100% | 97.3 MiB/s | 99.6 KiB | 00m00s [101/185] Installing libcom_err-0:1.47. 100% | 109.7 MiB/s | 112.3 KiB | 00m00s [102/185] Installing libverto-0:0.3.2-1 100% | 69.5 MiB/s | 71.2 KiB | 00m00s [103/185] Installing filesystem-srpm-ma 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [104/185] Installing elfutils-default-y 100% | 408.6 KiB/s | 2.0 KiB | 00m00s [105/185] Installing elfutils-libs-0:0. 100% | 243.6 MiB/s | 748.4 KiB | 00m00s [106/185] Installing pcre2-syntax-0:10. 100% | 138.8 MiB/s | 284.3 KiB | 00m00s [107/185] Installing pcre2-0:10.47-1.fc 100% | 233.0 MiB/s | 715.9 KiB | 00m00s [108/185] Installing libselinux-0:3.9-5 100% | 98.8 MiB/s | 202.4 KiB | 00m00s [109/185] Installing grep-0:3.12-2.fc44 100% | 45.1 MiB/s | 1.0 MiB | 00m00s [110/185] Installing sed-0:4.9-6.fc44.a 100% | 41.0 MiB/s | 881.4 KiB | 00m00s [111/185] Installing findutils-1:4.10.0 100% | 80.0 MiB/s | 1.9 MiB | 00m00s [112/185] Installing xz-1:5.8.1-4.fc44. 100% | 58.9 MiB/s | 1.4 MiB | 00m00s [113/185] Installing libmount-0:2.41.3- 100% | 205.7 MiB/s | 421.2 KiB | 00m00s [114/185] Installing libsemanage-0:3.9- 100% | 117.8 MiB/s | 361.9 KiB | 00m00s [115/185] Installing util-linux-core-0: 100% | 98.5 MiB/s | 2.5 MiB | 00m00s [116/185] Installing openssl-libs-1:3.5 100% | 296.9 MiB/s | 7.4 MiB | 00m00s [117/185] Installing coreutils-0:9.9-1. 100% | 180.2 MiB/s | 8.3 MiB | 00m00s [118/185] Installing ca-certificates-0: 100% | 1.5 MiB/s | 2.5 MiB | 00m02s [119/185] Installing libarchive-0:3.8.4 100% | 190.9 MiB/s | 977.2 KiB | 00m00s [120/185] Installing krb5-libs-0:1.21.3 100% | 149.0 MiB/s | 2.5 MiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.aarch64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.aarch64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [121/185] Installing tpm2-tss-0:4.1.3-8 100% | 239.9 MiB/s | 2.2 MiB | 00m00s [122/185] Installing gnupg2-gpg-agent-0 100% | 33.2 MiB/s | 850.6 KiB | 00m00s [123/185] Installing ima-evm-utils-libs 100% | 91.8 MiB/s | 94.0 KiB | 00m00s [124/185] Installing libssh-0:0.11.3-1. 100% | 143.8 MiB/s | 589.1 KiB | 00m00s [125/185] Installing util-linux-0:2.41. 100% | 137.1 MiB/s | 6.9 MiB | 00m00s [126/185] Installing gzip-0:1.14-1.fc44 100% | 22.8 MiB/s | 443.2 KiB | 00m00s [127/185] Installing rpm-sequoia-0:1.10 100% | 288.3 MiB/s | 2.3 MiB | 00m00s [128/185] Installing rpm-libs-0:6.0.1-1 100% | 243.4 MiB/s | 997.1 KiB | 00m00s [129/185] Installing libfsverity-0:1.6- 100% | 67.7 MiB/s | 69.3 KiB | 00m00s [130/185] Installing libevent-0:2.1.12- 100% | 271.1 MiB/s | 1.1 MiB | 00m00s [131/185] Installing openldap-0:2.6.10- 100% | 186.9 MiB/s | 765.6 KiB | 00m00s [132/185] Installing gnupg2-dirmngr-0:2 100% | 26.4 MiB/s | 648.7 KiB | 00m00s [133/185] Installing gnupg2-0:2.4.8-4.f 100% | 174.2 MiB/s | 6.4 MiB | 00m00s [134/185] Installing rpm-sign-libs-0:6. 100% | 67.0 MiB/s | 68.6 KiB | 00m00s [135/185] Installing rpm-build-libs-0:6 100% | 129.4 MiB/s | 265.0 KiB | 00m00s [136/185] Installing gpgverify-0:2.2-3. 100% | 9.2 MiB/s | 9.4 KiB | 00m00s [137/185] Installing ngtcp2-crypto-ossl 100% | 66.8 MiB/s | 68.4 KiB | 00m00s [138/185] Installing libcurl-0:8.18.0~r 100% | 239.8 MiB/s | 982.0 KiB | 00m00s [139/185] Installing elfutils-debuginfo 100% | 8.4 MiB/s | 146.1 KiB | 00m00s [140/185] Installing binutils-0:2.45.50 100% | 287.0 MiB/s | 30.7 MiB | 00m00s [141/185] Installing elfutils-0:0.194-2 100% | 128.1 MiB/s | 3.2 MiB | 00m00s [142/185] Installing gdb-minimal-0:16.3 100% | 237.2 MiB/s | 13.0 MiB | 00m00s [143/185] Installing debugedit-0:5.2-3. 100% | 18.5 MiB/s | 321.2 KiB | 00m00s [144/185] Installing curl-0:8.18.0~rc2- 100% | 17.5 MiB/s | 466.3 KiB | 00m00s [145/185] Installing rpm-0:6.0.1-1.fc44 100% | 65.0 MiB/s | 2.8 MiB | 00m00s [146/185] Installing cmake-srpm-macros- 100% | 785.2 KiB/s | 804.0 B | 00m00s [147/185] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [148/185] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [149/185] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [150/185] Installing tree-sitter-srpm-m 100% | 9.1 MiB/s | 9.3 KiB | 00m00s [151/185] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [152/185] Installing tar-2:1.35-6.fc43. 100% | 107.3 MiB/s | 3.0 MiB | 00m00s [153/185] Installing linkdupes-0:0.7.2- 100% | 40.1 MiB/s | 780.8 KiB | 00m00s [154/185] Installing libselinux-utils-0 100% | 61.7 MiB/s | 1.4 MiB | 00m00s [155/185] Installing policycoreutils-0: 100% | 43.7 MiB/s | 1.5 MiB | 00m00s [156/185] Installing selinux-policy-0:4 100% | 1.6 MiB/s | 33.6 KiB | 00m00s [157/185] Installing selinux-policy-tar 100% | 128.6 MiB/s | 14.9 MiB | 00m00s [158/185] Installing build-reproducibil 100% | 1.5 MiB/s | 1.5 KiB | 00m00s [159/185] Installing rust-srpm-macros-0 100% | 6.2 MiB/s | 6.4 KiB | 00m00s [160/185] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 740.0 B | 00m00s [161/185] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [162/185] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [163/185] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [164/185] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [165/185] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [166/185] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [167/185] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [168/185] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [169/185] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [170/185] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [171/185] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [172/185] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [173/185] Installing pkgconf-pkg-config 100% | 104.3 KiB/s | 1.8 KiB | 00m00s [174/185] Installing rpm-build-0:6.0.1- 100% | 31.3 MiB/s | 608.2 KiB | 00m00s [175/185] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [176/185] Installing redhat-rpm-config- 100% | 61.8 MiB/s | 189.9 KiB | 00m00s [177/185] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [178/185] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [179/185] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [180/185] Installing R-srpm-macros-0:1. 100% | 0.0 B/s | 4.0 KiB | 00m00s [181/185] Installing python-srpm-macros 100% | 51.7 MiB/s | 52.9 KiB | 00m00s [182/185] Installing rpm-plugin-selinux 100% | 67.4 MiB/s | 69.0 KiB | 00m00s [183/185] Installing which-0:2.23-3.fc4 100% | 6.8 MiB/s | 125.6 KiB | 00m00s [184/185] Installing shadow-utils-2:4.1 100% | 93.6 MiB/s | 4.5 MiB | 00m00s [185/185] Installing info-0:7.2-7.fc44. 100% | 48.8 KiB/s | 422.0 KiB | 00m09s Warning: skipped OpenPGP checks for 183 packages from repositories: copr_base, https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: R-srpm-macros-1.3.0-1.fc44.noarch add-determinism-0.7.2-2.fc44.aarch64 alternatives-1.33-3.fc44.aarch64 ansible-srpm-macros-1-18.1.fc43.noarch audit-libs-4.1.2-2.fc44.aarch64 bash-5.3.0-2.fc44.aarch64 binutils-2.45.50-12.fc44.aarch64 build-reproducibility-srpm-macros-0.7.2-2.fc44.noarch bzip2-1.0.8-21.fc44.aarch64 bzip2-libs-1.0.8-21.fc44.aarch64 ca-certificates-2025.2.80_v9.0.304-2.fc44.noarch cmake-srpm-macros-3.31.10-3.fc44.noarch coreutils-9.9-1.fc44.aarch64 coreutils-common-9.9-1.fc44.aarch64 cpio-2.15-6.fc44.aarch64 crypto-policies-20251128-1.git19878fe.fc44.noarch curl-8.18.0~rc2-1.fc44.aarch64 cyrus-sasl-lib-2.1.28-33.fc44.aarch64 debugedit-5.2-3.fc44.aarch64 diffutils-3.12-3.fc44.aarch64 dwz-0.16-2.fc44.aarch64 ed-1.22.3-1.fc44.aarch64 efi-srpm-macros-6-5.fc44.noarch elfutils-0.194-2.fc44.aarch64 elfutils-debuginfod-client-0.194-2.fc44.aarch64 elfutils-default-yama-scope-0.194-2.fc44.noarch elfutils-libelf-0.194-2.fc44.aarch64 elfutils-libs-0.194-2.fc44.aarch64 fedora-gpg-keys-44-0.1.noarch fedora-release-44-0.10.noarch fedora-release-common-44-0.10.noarch fedora-release-identity-basic-44-0.10.noarch fedora-repos-44-0.1.noarch fedora-repos-rawhide-44-0.1.noarch file-5.46-8.fc44.aarch64 file-libs-5.46-8.fc44.aarch64 filesystem-3.18-51.fc44.aarch64 filesystem-srpm-macros-3.18-51.fc44.noarch findutils-4.10.0-6.fc44.aarch64 fonts-srpm-macros-5.0.0-1.fc44.noarch forge-srpm-macros-0.4.0-3.fc43.noarch fpc-srpm-macros-1.3-15.fc43.noarch gap-srpm-macros-2-1.fc44.noarch gawk-5.3.2-2.fc44.aarch64 gdb-minimal-16.3-6.fc44.aarch64 gdbm-libs-1.23-10.fc44.aarch64 ghc-srpm-macros-1.9.2-3.fc43.noarch glibc-2.42.9000-17.fc44.aarch64 glibc-common-2.42.9000-17.fc44.aarch64 glibc-gconv-extra-2.42.9000-17.fc44.aarch64 glibc-minimal-langpack-2.42.9000-17.fc44.aarch64 gmp-6.3.0-4.fc44.aarch64 gnat-srpm-macros-6-8.fc43.noarch gnulib-l10n-20241231-1.fc44.noarch gnupg2-2.4.8-4.fc44.aarch64 gnupg2-dirmngr-2.4.8-4.fc44.aarch64 gnupg2-gpg-agent-2.4.8-4.fc44.aarch64 gnupg2-gpgconf-2.4.8-4.fc44.aarch64 gnupg2-keyboxd-2.4.8-4.fc44.aarch64 gnupg2-verify-2.4.8-4.fc44.aarch64 gnutls-3.8.11-8.fc44.aarch64 go-srpm-macros-3.8.0-1.fc44.noarch gpgverify-2.2-3.fc43.noarch grep-3.12-2.fc44.aarch64 gzip-1.14-1.fc44.aarch64 ima-evm-utils-libs-1.6.2-7.fc44.aarch64 info-7.2-7.fc44.aarch64 jansson-2.14-3.fc44.aarch64 java-srpm-macros-1-7.fc43.noarch json-c-0.18-7.fc44.aarch64 kernel-srpm-macros-1.0-27.fc43.noarch keyutils-libs-1.6.3-6.fc44.aarch64 krb5-libs-1.21.3-10.fc44.aarch64 libacl-2.3.2-4.fc44.aarch64 libarchive-3.8.4-1.fc44.aarch64 libassuan-2.5.7-4.fc44.aarch64 libatomic-16.0.0-0.3.fc44.aarch64 libattr-2.5.2-6.fc43.aarch64 libblkid-2.41.3-8.fc44.aarch64 libbrotli-1.2.0-1.fc44.aarch64 libcap-2.77-1.fc44.aarch64 libcap-ng-0.8.5-8.fc44.aarch64 libcom_err-1.47.3-3.fc44.aarch64 libcurl-8.18.0~rc2-1.fc44.aarch64 libeconf-0.7.9-2.fc44.aarch64 libevent-2.1.12-16.fc44.aarch64 libfdisk-2.41.3-8.fc44.aarch64 libffi-3.5.2-1.fc44.aarch64 libfsverity-1.6-3.fc44.aarch64 libgcc-16.0.0-0.3.fc44.aarch64 libgcrypt-1.11.2-1.fc44.aarch64 libgomp-16.0.0-0.3.fc44.aarch64 libgpg-error-1.58-1.fc44.aarch64 libidn2-2.3.8-2.fc44.aarch64 libksba-1.6.7-4.fc44.aarch64 liblastlog2-2.41.3-8.fc44.aarch64 libmount-2.41.3-8.fc44.aarch64 libnghttp2-1.68.0-2.fc44.aarch64 libnghttp3-1.14.0-1.fc44.aarch64 libpkgconf-2.3.0-3.fc44.aarch64 libpsl-0.21.5-6.fc44.aarch64 libselinux-3.9-5.fc44.aarch64 libselinux-utils-3.9-5.fc44.aarch64 libsemanage-3.9-4.fc44.aarch64 libsepol-3.9-2.fc44.aarch64 libsmartcols-2.41.3-8.fc44.aarch64 libssh-0.11.3-1.fc44.aarch64 libssh-config-0.11.3-1.fc44.noarch libstdc++-16.0.0-0.3.fc44.aarch64 libtasn1-4.20.0-2.fc44.aarch64 libtool-ltdl-2.5.4-9.fc44.aarch64 libunistring-1.1-10.fc44.aarch64 libusb1-1.0.29-4.fc44.aarch64 libuuid-2.41.3-8.fc44.aarch64 libverto-0.3.2-11.fc43.aarch64 libxcrypt-4.5.2-2.fc44.aarch64 libxml2-2.12.10-5.fc44.aarch64 libzstd-1.5.7-3.fc44.aarch64 linkdupes-0.7.2-2.fc44.aarch64 lua-libs-5.4.8-4.fc44.aarch64 lua-srpm-macros-1-16.fc43.noarch lz4-libs-1.10.0-3.fc44.aarch64 mpfr-4.2.2-2.fc44.aarch64 ncurses-base-6.5-8.20250614.fc44.noarch ncurses-libs-6.5-8.20250614.fc44.aarch64 nettle-3.10.1-2.fc44.aarch64 ngtcp2-1.18.0-1.fc44.aarch64 ngtcp2-crypto-ossl-1.18.0-1.fc44.aarch64 npth-1.8-3.fc44.aarch64 ocaml-srpm-macros-11-2.fc43.noarch openblas-srpm-macros-2-20.fc43.noarch openldap-2.6.10-4.fc44.aarch64 openssl-libs-3.5.4-1.fc44.aarch64 p11-kit-0.25.8-1.fc44.aarch64 p11-kit-trust-0.25.8-1.fc44.aarch64 package-notes-srpm-macros-0.5-14.fc43.noarch pam-libs-1.7.1-3.fc44.aarch64 patch-2.8-3.fc44.aarch64 pcre2-10.47-1.fc44.aarch64 pcre2-syntax-10.47-1.fc44.noarch perl-srpm-macros-1-60.fc43.noarch pkgconf-2.3.0-3.fc44.aarch64 pkgconf-m4-2.3.0-3.fc44.noarch pkgconf-pkg-config-2.3.0-3.fc44.aarch64 policycoreutils-3.9-7.fc44.aarch64 popt-1.19-9.fc44.aarch64 publicsuffix-list-dafsa-20250616-2.fc43.noarch pyproject-srpm-macros-1.18.6-1.fc44.noarch python-srpm-macros-3.14-9.fc44.noarch qt5-srpm-macros-5.15.18-1.fc44.noarch qt6-srpm-macros-6.10.1-1.fc44.noarch readline-8.3-2.fc44.aarch64 redhat-rpm-config-343-19.fc44.noarch rpm-6.0.1-1.fc44.aarch64 rpm-build-6.0.1-1.fc44.aarch64 rpm-build-libs-6.0.1-1.fc44.aarch64 rpm-libs-6.0.1-1.fc44.aarch64 rpm-plugin-selinux-6.0.1-1.fc44.aarch64 rpm-sequoia-1.10.0-1.fc44.aarch64 rpm-sign-libs-6.0.1-1.fc44.aarch64 rust-srpm-macros-28.4-1.fc44.noarch sed-4.9-6.fc44.aarch64 selinux-policy-42.19-1.fc44.noarch selinux-policy-targeted-42.19-1.fc44.noarch setup-2.15.0-27.fc44.noarch shadow-utils-4.18.0-7.fc44.aarch64 sqlite-libs-3.51.0-1.fc44.aarch64 systemd-libs-259-1.fc44.aarch64 systemd-standalone-sysusers-259-1.fc44.aarch64 tar-1.35-6.fc43.aarch64 tpm2-tss-4.1.3-8.fc43.aarch64 tree-sitter-srpm-macros-0.4.2-1.fc43.noarch unzip-6.0-68.fc44.aarch64 util-linux-2.41.3-8.fc44.aarch64 util-linux-core-2.41.3-8.fc44.aarch64 which-2.23-3.fc43.aarch64 xxhash-libs-0.8.3-3.fc43.aarch64 xz-5.8.1-4.fc44.aarch64 xz-libs-5.8.1-4.fc44.aarch64 zig-srpm-macros-1-5.fc43.noarch zip-3.0-44.fc43.aarch64 zlib-ng-compat-2.3.2-2.fc44.aarch64 zstd-1.5.7-3.fc44.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1754352000 Wrote: /builddir/build/SRPMS/seaview-5.1-2.fc44.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1767222147.947595/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-6x97sn48/seaview/seaview.spec) Config(child) 0 minutes 20 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/seaview-5.1-2.fc44.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1767222147.947595/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1767222147.947595/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1767222147.947595/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-1.fc44.aarch64 rpm-sequoia-1.10.0-1.fc44.aarch64 dnf5-5.3.0.0-3.fc44.aarch64 dnf5-plugins-5.3.0.0-3.fc44.aarch64 Finish: chroot init Start: build phase for seaview-5.1-2.fc44.src.rpm Start: build setup for seaview-5.1-2.fc44.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1754352000 Wrote: /builddir/build/SRPMS/seaview-5.1-2.fc44.src.rpm Updating and loading repositories: Additional repo https_kojipkgs_fedorap 100% | 2.7 KiB/s | 3.5 KiB | 00m01s Copr repository 100% | 1.2 KiB/s | 1.5 KiB | 00m01s fedora 100% | 6.5 KiB/s | 10.5 KiB | 00m02s Repositories loaded. Package Arch Version Repository Size Installing: desktop-file-utils aarch64 0:0.28-3.fc44 copr_base 317.9 KiB fltk-devel aarch64 0:1.3.11-2.fc44 copr_base 41.5 MiB gcc-c++ aarch64 0:16.0.0-0.3.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 45.7 MiB libXinerama-devel aarch64 0:1.1.5-9.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 7.0 KiB make aarch64 1:4.4.1-11.fc44 copr_base 1.8 MiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0:0.301-15.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 192.7 KiB annobin-docs noarch 0:13.04-3.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 99.2 KiB annobin-plugin-gcc aarch64 0:13.04-3.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 707.6 KiB brotli aarch64 0:1.2.0-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 69.6 KiB brotli-devel 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https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 5.4 MiB sysprof-capture-devel aarch64 0:49.0-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 767.4 KiB tzdata noarch 0:2025c-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.2 MiB xml-common noarch 0:0.6.3-67.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 78.4 KiB xorg-x11-proto-devel noarch 0:2025.1-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.8 MiB xz-devel aarch64 1:5.8.1-4.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 258.8 KiB zlib-ng-compat-devel aarch64 0:2.3.2-2.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 107.0 KiB Transaction Summary: Installing: 128 packages Total size of inbound packages is 173 MiB. 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Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. 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100% | 14.3 MiB/s | 321.7 KiB | 00m00s [129/130] Installing fltk-devel-0:1.3.1 100% | 344.9 MiB/s | 41.7 MiB | 00m00s [130/130] Installing libXinerama-devel- 100% | 40.8 KiB/s | 8.5 KiB | 00m00s Warning: skipped OpenPGP checks for 124 packages from repositories: copr_base, https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch Complete! Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1754352000 Wrote: /builddir/build/SRPMS/seaview-5.1-2.fc44.src.rpm Updating and loading repositories: Additional repo https_kojipkgs_fedorap 100% | 26.3 KiB/s | 3.5 KiB | 00m00s Copr repository 100% | 11.6 KiB/s | 1.5 KiB | 00m00s fedora 100% | 32.2 KiB/s | 10.5 KiB | 00m00s Repositories loaded. Package "desktop-file-utils-0.28-3.fc44.aarch64" is already installed. Package "fltk-devel-1.3.11-2.fc44.aarch64" is already installed. Package "gcc-c++-16.0.0-0.3.fc44.aarch64" is already installed. Package "libXinerama-devel-1.1.5-9.fc43.aarch64" is already installed. Package "make-1:4.4.1-11.fc44.aarch64" is already installed. Nothing to do. Finish: build setup for seaview-5.1-2.fc44.src.rpm Start: rpmbuild seaview-5.1-2.fc44.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1754352000 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.imcym2 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.4Zvpzg + umask 022 + cd /builddir/build/BUILD/seaview-5.1-build + cd /builddir/build/BUILD/seaview-5.1-build + rm -rf seaview + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/seaview_5.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd seaview + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (seaview-chris.patch):' Patch #0 (seaview-chris.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .chris --fuzz=0 patching file Makefile + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.BKUbe2 + umask 022 + cd /builddir/build/BUILD/seaview-5.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seaview + make -j4 c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" seaview.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" custom.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" use_mase_files.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" regions.cxx regions.cxx: In function ‘void save_active_region(SEA_VIEW*)’: regions.cxx:503:10: warning: variable ‘taille’ set but not used [-Wunused-but-set-variable=] 503 | int tmp, taille; | ^~~~~~ use_mase_files.cxx: In function ‘int read_mase_seqs_header(const char*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:215:9: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 215 | while((line[l-1] == ' ' || line[l-1] == '\n') && l>0 ) l--; line[l] = 0; | ^~~~~ use_mase_files.cxx:215:69: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 215 | while((line[l-1] == ' ' || line[l-1] == '\n') && l>0 ) l--; line[l] = 0; | ^~~~ regions.cxx: In function ‘int create_gblocks_mask(SEA_VIEW*, region*, int, int, int, int, int)’: regions.cxx:314:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 314 | system(cmd); | ~~~~~~^~~~~ use_mase_files.cxx: In function ‘int read_clustal_align(const char*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:623:17: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 623 | while(*p==' ') p--; *(p+1)=0; | ^~~~~ use_mase_files.cxx:623:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 623 | while(*p==' ') p--; *(p+1)=0; | ^ seaview.cxx: In function ‘int delete_selected_seqs(SEA_VIEW*)’: seaview.cxx:1759:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1759 | for(i = 0, j = 0; i< view->tot_seqs; i++) | ^~~ seaview.cxx:1762:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1762 | memcpy(view->col_rank , temp_data, new_tot_seqs * sizeof(char *) ); | ^~~~~~ seaview.cxx: In function ‘void colors_callback(Fl_Widget*, void*)’: seaview.cxx:1913:15: warning: variable ‘item’ set but not used [-Wunused-but-set-variable=] 1913 | Fl_Menu_Item *item; | ^~~~ seaview.cxx: In function ‘void delete_tmp_filename(const char*)’: seaview.cxx:638:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 638 | system(fname); | ~~~~~~^~~~~~~ seaview.cxx: In function ‘char* run_and_close_native_file_chooser(Fl_Native_File_Chooser*, int)’: seaview.cxx:2908:45: warning: ignoring return value of ‘int chdir(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2908 | if( *last_visited_directory )chdir(last_visited_directory); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ regions.cxx:291:40: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 496 [-Wformat-truncation=] 291 | snprintf(cmd, sizeof(cmd), "\"%s\" \"%s\" -p=s -t=%c", q, fname, view->protein?'p':'d'); | ^~ ~~~~~ In file included from /usr/include/stdio.h:974, from seaview.h:3, from regions.cxx:1: In function ‘snprintf’, inlined from ‘create_gblocks_mask(_SEA_VIEW*, region*, int, int, int, int, int)’ at regions.cxx:291:11: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output 16 or more bytes (assuming 4111) into a destination of size 500 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ regions.cxx: In function ‘create_gblocks_mask(_SEA_VIEW*, region*, int, int, int, int, int)’: regions.cxx:344:42: warning: ‘last’ may be used uninitialized [-Wmaybe-uninitialized] 344 | memmove(cmd, last, l + 1 - (last - cmd)); | ~~~~~^~~~~ regions.cxx:246:56: note: ‘last’ was declared here 246 | char base_fname[PATH_MAX], fname[PATH_MAX], *p, *q, *last; | ^~~~ regions.cxx: In function ‘site_mask_creation_dialog(_SEA_VIEW*, position_mask*)’: regions.cxx:746:10: warning: ‘retval’ may be used uninitialized [-Wmaybe-uninitialized] 746 | return retval; | ^~~~~~ regions.cxx:688:15: note: ‘retval’ was declared here 688 | const char *retval; | ^~~~~~ seaview.cxx: In function ‘help_callback(Fl_Widget*, void*)’: seaview.cxx:3627:53: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 3627 | "Help file %s\nnot found in PATH directories nor in current directory", help_file | ^~ seaview.cxx: In function ‘draw_header(Fl_Widget*, _SEA_VIEW*) [clone .part.0]’: seaview.cxx:1130:28: warning: ‘%7d’ directive output may be truncated writing between 7 and 11 bytes into a region of size 10 [-Wformat-truncation=] 1130 | snprintf(site_line, 10, "%7d", view->first_site + view->tot_sites - 1); | ^~~ seaview.cxx:1130:27: note: directive argument in the range [-2147483648, 2147483646] 1130 | snprintf(site_line, 10, "%7d", view->first_site + view->tot_sites - 1); | ^~~~~ In file included from /usr/include/stdio.h:974, from seaview.h:3, from seaview.cxx:67: In function ‘snprintf’, inlined from ‘draw_header(Fl_Widget*, _SEA_VIEW*) [clone .part.0]’ at seaview.cxx:1130:11: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 8 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" load_seq.cxx use_mase_files.cxx: In function ‘read_mase_seqs_header(char const*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:167:32: warning: ‘lpre’ may be used uninitialized [-Wmaybe-uninitialized] 167 | if(lpre+lseq > curr_max_header) { | ~~~~^~~~~ use_mase_files.cxx:137:18: note: ‘lpre’ was declared here 137 | int l, lenseqs, lpre, lseq, l2, totseqs = -1, want_header, curr_max_header; | ^~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" align.cxx use_mase_files.cxx: In function ‘read_phylip_align(char const*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:521:7: warning: ‘q’ may be used uninitialized [-Wmaybe-uninitialized] 521 | l = q - seq[totseqs - 1]; | ~~^~~~~~~~~~~~~~~~~~ use_mase_files.cxx:466:11: note: ‘q’ was declared here 466 | char *p, *q; | ^ align.cxx: In function ‘void replace_stars(char*)’: align.cxx:1310:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1310 | fread(all, 1, l, in); | ~~~~~^~~~~~~~~~~~~~~ use_mase_files.cxx: In function ‘read_clustal_align(char const*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:617:61: warning: ‘wid_name’ may be used uninitialized [-Wmaybe-uninitialized] 617 | seqname[curr_spec] = (char *)malloc(wid_name+1); | ~~~~~~~~^~ use_mase_files.cxx:564:16: note: ‘wid_name’ was declared here 564 | carac, wid_name; | ^~~~~~~~ use_mase_files.cxx:637:17: warning: ‘curr_max_len’ may be used uninitialized [-Wmaybe-uninitialized] 637 | if(curr_len + l > curr_max_len) { | ^~ use_mase_files.cxx:563:64: note: ‘curr_max_len’ was declared here 563 | int i, l, curr_spec, first=TRUE, curr_len, next_len, tot_spec, curr_max_len, | ^~~~~~~~~~~~ use_mase_files.cxx:650:15: warning: ‘l’ may be used uninitialized [-Wmaybe-uninitialized] 650 | memcpy(seq[curr_spec]+curr_len, line + wid_name, l); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx:563:8: note: ‘l’ was declared here 563 | int i, l, curr_spec, first=TRUE, curr_len, next_len, tot_spec, curr_max_len, | ^ align.cxx: In function ‘edit_align_callback(Fl_Widget*, void*)’: align.cxx:952:48: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 952 | snprintf(resname, sizeof(resname), "msa_name_%d", view->alignment_algorithm + 1); | ^ In file included from /usr/include/stdio.h:974, from seaview.h:3, from align.cxx:1: In function ‘snprintf’, inlined from ‘edit_align_callback(Fl_Widget*, void*)’ at align.cxx:952:9: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 11 and 21 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘edit_align_callback(Fl_Widget*, void*)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘edit_align_callback(Fl_Widget*, void*)’ at align.cxx:954:21: align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘edit_align_callback(Fl_Widget*, void*)’ at align.cxx:954:21: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘align_opt_callback(Fl_Widget*, long)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘align_opt_callback(Fl_Widget*, long)’ at align.cxx:976:22: align.cxx:999:23: note: directive argument in the range [1, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘align_opt_callback(Fl_Widget*, long)’ at align.cxx:976:22: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 24 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘align_opt_callback(Fl_Widget*, long)’: c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" xfmatpt.cxx align.cxx:981:21: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 5 [-Wformat-truncation=] 981 | snprintf(tmp, 5, "%d", reponse); | ^~ align.cxx:981:20: note: directive argument in the range [0, 2147483646] 981 | snprintf(tmp, 5, "%d", reponse); | ^~~~ In function ‘snprintf’, inlined from ‘align_opt_callback(Fl_Widget*, long)’ at align.cxx:981:11: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 11 bytes into a destination of size 5 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:829:50: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 829 | snprintf(msa_name, sizeof(msa_name), "msa_name_%d", view->alignment_algorithm + 1); | ^ In function ‘snprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:829:9: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 11 and 21 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:839:58: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 839 | snprintf(msa_name, sizeof(msa_name), "msa_name_%d", num + 1); | ^ In function ‘snprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:839:10: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 11 and 21 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:841:58: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 841 | snprintf(msa_name, sizeof(msa_name), "msa_name_%d", num); | ^ In function ‘snprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:841:10: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 11 and 21 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:844:58: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 844 | snprintf(msa_name, sizeof(msa_name), "msa_args_%d", num + 1); | ^ In function ‘snprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:844:10: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 11 and 21 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:846:58: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 846 | snprintf(msa_name, sizeof(msa_name), "msa_args_%d", num); | ^ In function ‘snprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:846:10: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 11 and 21 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:849:24: align.cxx:999:23: note: directive argument in the range [-2147483646, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:849:24: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:857:39: align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483646] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:857:39: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:853:26: align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483646] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:853:26: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:865:23: align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:865:23: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:877:21: align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:877:21: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ use_mase_files.cxx: In function ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’: use_mase_files.cxx:1833:35: warning: ‘lines_per_page’ may be used uninitialized [-Wmaybe-uninitialized] 1833 | if( use_pdf && (!firstpage) && (curr_lines + view->tot_seqs + nl > lines_per_page)) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx:1678:32: note: ‘lines_per_page’ was declared here 1678 | res_per_line, nl, firstpage, lines_per_page, use_pdf, use_svg, top_margin; | ^~~~~~~~~~~~~~ use_mase_files.cxx:1769:14: warning: ‘top_margin’ may be used uninitialized [-Wmaybe-uninitialized] 1769 | fl_draw(oneline, margin, top_margin); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx:1678:66: note: ‘top_margin’ was declared here 1678 | res_per_line, nl, firstpage, lines_per_page, use_pdf, use_svg, top_margin; | ^~~~~~~~~~ In function ‘color_pdf_display(_SEA_VIEW*, int (*)(int), char*, int, double, double, int, double, double, int, int)’, inlined from ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’ at use_mase_files.cxx:1920:34: use_mase_files.cxx:1984:33: warning: ‘descender’ may be used uninitialized [-Wmaybe-uninitialized] 1984 | fl_rectf(xx, y - fontsize + descender, char_width+1, fontsize); | ~~~~~~~~~~~~~^~~~~~~~~~~ use_mase_files.cxx: In function ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’: use_mase_files.cxx:1689:42: note: ‘descender’ was declared here 1689 | double char_width = fontsize/2, descender, margin = 25; | ^~~~~~~~~ use_mase_files.cxx:1767:48: warning: ‘surface’ may be used uninitialized [-Wmaybe-uninitialized] 1767 | ((PDF_or_PS_File_Device*)surface)->origin(0, fontsize); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ use_mase_files.cxx:1679:22: note: ‘surface’ was declared here 1679 | Fl_Surface_Device *surface; | ^~~~~~~ In file included from /usr/include/string.h:580, from seaview.h:5, from use_mase_files.cxx:1: In function ‘memset’, inlined from ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’ at use_mase_files.cxx:1822:8: /usr/include/bits/string_fortified.h:59:33: warning: ‘vary_pos’ may be used uninitialized [-Wmaybe-uninitialized] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx: In function ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’: use_mase_files.cxx:1686:8: note: ‘vary_pos’ was declared here 1686 | int *vary_pos; /* rang ds alignement de la colonne imprimée */ | ^~~~~~~~ seaview.cxx: In function ‘goto_callback(Fl_Widget*, void*)’: seaview.cxx:2737:16: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2737 | strncpy(target, p, l); target[l] = 0; majuscules(target); | ^ seaview.cxx:2735:19: note: length computed here 2735 | l = strlen(p); | ~~~~~~^~~ align.cxx: In function ‘calc_msa_command(_SEA_VIEW*, char*, void (*)(char const*, ...))’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘calc_msa_command(_SEA_VIEW*, char*, void (*)(char const*, ...))’ at align.cxx:615:24: align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘calc_msa_command(_SEA_VIEW*, char*, void (*)(char const*, ...))’ at align.cxx:615:24: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘cre_align_menu(_SEA_VIEW*)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘cre_align_menu(_SEA_VIEW*)’ at align.cxx:752:23: align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘cre_align_menu(_SEA_VIEW*)’ at align.cxx:752:23: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:580, from seaview.h:5: In function ‘memset’, inlined from ‘insert_gaps_at(_SEA_VIEW*, int, int, int)’ at seaview.cxx:3685:8: /usr/include/bits/string_fortified.h:59:33: warning: ‘gapcolor’ may be used uninitialized [-Wmaybe-uninitialized] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ seaview.cxx: In function ‘insert_gaps_at(_SEA_VIEW*, int, int, int)’: seaview.cxx:3665:8: note: ‘gapcolor’ was declared here 3665 | int l, gapcolor, *plength; | ^~~~~~~~ align.cxx: In function ‘get_algo_opts(int, char**)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32: align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘get_opt_resname(int)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ seaview.cxx: In function ‘del_gap_only_sites(_SEA_VIEW*)’: seaview.cxx:1696:23: warning: ‘debut’ may be used uninitialized [-Wmaybe-uninitialized] 1696 | count = position - debut; | ~~~~~~^~~~~~~~~~~~~~~~~~ seaview.cxx:1675:39: note: ‘debut’ was declared here 1675 | int position, numseq, allgaps, inrun, debut, count; | ^~~~~ use_mase_files.cxx: In function ‘format_conversion(int, char**)’: use_mase_files.cxx:2373:3: warning: ‘err_message’ may be used uninitialized [-Wmaybe-uninitialized] 2373 | if (err_message) { | ^~ use_mase_files.cxx:2175:9: note: ‘err_message’ was declared here 2175 | char *err_message, *p; | ^~~~~~~~~~~ use_mase_files.cxx:2274:27: warning: ‘current_seg’ may be used uninitialized [-Wmaybe-uninitialized] 2274 | current_seg->next = seg; | ~~~~~~~~~~~~~~~~~~^~~~~ use_mase_files.cxx:2239:20: note: ‘current_seg’ was declared here 2239 | list_segments *current_seg; | ^~~~~~~~~~~ align.cxx: In function ‘save_fasta_file_no_gaponly(char*, char**, int, int*, int*)’: align.cxx:1353:47: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 8 [-Wformat-truncation=] 1353 | snprintf(seqname[num], 10, "S_%d", num); | ^~ align.cxx:1353:44: note: directive argument in the range [0, 2147483646] 1353 | snprintf(seqname[num], 10, "S_%d", num); | ^~~~~~ In function ‘snprintf’, inlined from ‘save_fasta_file_no_gaponly(char*, char**, int, int*, int*)’ at align.cxx:1353:11: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 4 and 13 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘unalign(_SEA_VIEW*)’: align.cxx:1423:91: warning: ‘calc_color_function’ may be used uninitialized [-Wmaybe-uninitialized] 1423 | view->col_rank[num][i] = (char)calc_color_function( res ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ align.cxx:1395:15: note: ‘calc_color_function’ was declared here 1395 | int (*calc_color_function)(int); | ^~~~~~~~~~~~~~~~~~~ seaview.cxx: In function ‘delete_selected_seqs(_SEA_VIEW*)’: seaview.cxx:1730:48: warning: ‘temp_data’ may be used uninitialized [-Wmaybe-uninitialized] 1730 | if( ! view->sel_seqs[i] ) temp_data[j++] = (void *) view->sequence[i]; | ^ seaview.cxx:1718:8: note: ‘temp_data’ was declared here 1718 | void **temp_data; | ^~~~~~~~~ seaview.cxx:1755:47: warning: ‘temp_int’ may be used uninitialized [-Wmaybe-uninitialized] 1755 | if( ! view->sel_seqs[i] ) temp_int[j++]= view->each_length[i]; | ^ seaview.cxx:1720:26: note: ‘temp_int’ was declared here 1720 | int new_tot_seqs, i, j, *temp_int, numset; | ^~~~~~~~ xfmatpt.cxx: In function ‘change_comput_params(Fl_Widget*, void*)’: xfmatpt.cxx:750:29: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 750 | snprintf(tmp, 10,"%d", fdui->identites); | ^ In file included from /usr/include/stdio.h:974, from seaview.h:3, from matpt.h:3, from xfmatpt.cxx:1: In function ‘snprintf’, inlined from ‘change_comput_params(Fl_Widget*, void*)’ at xfmatpt.cxx:750:10: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" comlines.cxx align.cxx: In function ‘replace_align_part(_SEA_VIEW*, int, int, char*, int, int, int*, align_choice, char const**)’: align.cxx:456:83: warning: ‘calc_color_function’ may be used uninitialized [-Wmaybe-uninitialized] 456 | view->col_rank[num][i] = (char)calc_color_function( res ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ align.cxx:300:7: note: ‘calc_color_function’ was declared here 300 | int (*calc_color_function)(int); | ^~~~~~~~~~~~~~~~~~~ seaview.cxx: In function ‘edit_menu_callback(Fl_Widget*, void*)’: seaview.cxx:2572:17: warning: ‘new_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2572 | new_pos += 2; | ~~~~~~~~^~~~ seaview.cxx:2556:30: note: ‘new_pos’ was declared here 2556 | int old_total, *tmp, new_pos, i, old_first_seq; | ^~~~~~~ align.cxx: In function ‘profile_align(_SEA_VIEW*)’: align.cxx:1289:90: warning: ‘calc_color_function’ may be used uninitialized [-Wmaybe-uninitialized] 1289 | view->col_rank[table[num]][i] = (char)calc_color_function( res ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ align.cxx:1116:15: note: ‘calc_color_function’ was declared here 1116 | int (*calc_color_function)(int); | ^~~~~~~~~~~~~~~~~~~ align.cxx: In function ‘command_line_align(int, char**)’: align.cxx:1515:56: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 1515 | snprintf(opt_name, sizeof(opt_name), "msa_opt_args_%d", | ^~ align.cxx:1515:42: note: directive argument in the range [-2147483647, 2147483647] 1515 | snprintf(opt_name, sizeof(opt_name), "msa_opt_args_%d", | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘command_line_align(int, char**)’ at align.cxx:1515:13: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from seaview.h:13: In member function ‘Fl_Menu_Item::clear()’, inlined from ‘command_line_align(int, char**)’ at align.cxx:1512:14: /usr/include/FL/Fl_Menu_Item.H:326:17: warning: ‘MEM[(struct Fl_Menu_Item *)_143 + 896B].flags’ is used uninitialized [-Wuninitialized] 326 | void clear() {flags &= ~FL_MENU_VALUE;} | ^~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" resource.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" nexus.cxx xfmatpt.cxx: In function ‘really_close(FD_matpt*)’: xfmatpt.cxx:889:5: warning: ‘free’ called on pointer ‘matpt_10(D)->seq1’ with nonzero offset 1 [-Wfree-nonheap-object] 889 | free(matpt->seq1 + 1); | ~~~~^~~~~~~~~~~~~~~~~ xfmatpt.cxx:890:5: warning: ‘free’ called on pointer ‘matpt_10(D)->seq2’ with nonzero offset 1 [-Wfree-nonheap-object] 890 | free(matpt->seq2 + 1); | ~~~~^~~~~~~~~~~~~~~~~ xfmatpt.cxx: In function ‘show_dot_plot(char*, char*, char*, char*, int, int, int, void*)’: xfmatpt.cxx:124:21: warning: ‘free’ called on pointer ‘matpt.8_9->seq1’ with nonzero offset 1 [-Wfree-nonheap-object] 124 | free(matpt->seq1+1); | ~~~~^~~~~~~~~~~~~~~ xfmatpt.cxx:125:21: warning: ‘free’ called on pointer ‘matpt.8_9->seq2’ with nonzero offset 1 [-Wfree-nonheap-object] 125 | free(matpt->seq2+1); | ~~~~^~~~~~~~~~~~~~~ seaview.cxx: In function ‘handle_keyboard(_SEA_VIEW*, unsigned int, int)’: seaview.cxx:4608:9: warning: ‘count_each’ may be used uninitialized [-Wmaybe-uninitialized] 4608 | if(count_each == multipl && | ^~ seaview.cxx:4572:20: note: ‘count_each’ was declared here 4572 | int count, count_each, debut, fin, test; | ^~~~~~~~~~ seaview.cxx:4735:17: warning: ‘count_each’ may be used uninitialized [-Wmaybe-uninitialized] 4735 | if(count_each == multipl && | ^~ seaview.cxx:4670:39: note: ‘count_each’ was declared here 4670 | int newlength = 0, count = 0, count_each, debut, fin, test; | ^~~~~~~~~~ seaview.cxx:4659:9: warning: ‘count_each’ may be used uninitialized [-Wmaybe-uninitialized] 4659 | if(count_each == multipl && view->regions != NULL) | ^~ seaview.cxx:4636:13: note: ‘count_each’ was declared here 4636 | int count_each; | ^~~~~~~~~~ seaview.cxx:4618:17: warning: ‘count’ may be used uninitialized [-Wmaybe-uninitialized] 4618 | new_pos = view->cursor_site - count; | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ seaview.cxx:4572:13: note: ‘count’ was declared here 4572 | int count, count_each, debut, fin, test; | ^~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" viewasprots.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" racnuc_fetch.cxx nexus.cxx: In function ‘next_token(_IO_FILE*) [clone .part.0]’: nexus.cxx:155:36: warning: pointer may be used after ‘realloc’ [-Wuse-after-free] 155 | p = q + (p - big_token); | ~~^~~~~~~~~~~ nexus.cxx:153:44: note: call to ‘realloc’ here 153 | q = (char *)realloc(big_token, l_token); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ nexus.cxx:173:36: warning: pointer may be used after ‘realloc’ [-Wuse-after-free] 173 | p = q + (p - big_token); | ~~^~~~~~~~~~~ nexus.cxx:171:44: note: call to ‘realloc’ here 171 | q = (char *)realloc(big_token, l_token); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ nexus.cxx: In function ‘process_taxa_taxlabels(_IO_FILE*, int)’: nexus.cxx:357:1: warning: ‘p’ may be used uninitialized [-Wmaybe-uninitialized] 357 | if(p != NULL && *p != ';') skip_command(in); | ^~ nexus.cxx:343:7: note: ‘p’ was declared here 343 | char *p, **names; | ^ nexus.cxx: In function ‘build_list_pairs(_IO_FILE*, int)’: nexus.cxx:441:27: warning: ‘next’ may be used uninitialized [-Wmaybe-uninitialized] 441 | next->fin = debut; | ~~~~~~~~~~^~~~~~~ nexus.cxx:424:30: note: ‘next’ was declared here 424 | list_segments *list = NULL, *next, *elt; | ^~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" concatenate.cxx nexus.cxx: In function ‘process_block_characters(_IO_FILE*, int*, char***, int*, int*)’: nexus.cxx:685:52: warning: ‘gap’ may be used uninitialized [-Wmaybe-uninitialized] 685 | seqs = process_chars_matrix(in, *nsites, gap, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 686 | *pntaxa, *taxnames, FALSE, matchchar, missing, *protein); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nexus.cxx:667:19: note: ‘gap’ was declared here 667 | int interleave=0, gap, matchchar = 0, missing = 0; | ^~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" statistics.cxx concatenate.cxx: In function ‘concatenate(_SEA_VIEW*, _SEA_VIEW*, bool, bool, bool)’: concatenate.cxx:123:32: warning: ‘found’ may be used uninitialized [-Wmaybe-uninitialized] 123 | if (want_addgaps) found[j] = TRUE; | ^ concatenate.cxx:99:17: note: ‘found’ was declared here 99 | int i, j, l, *found, target_length = target->seq_length; | ^~~~~ concatenate.cxx:113:25: warning: ‘gaps’ may be used uninitialized [-Wmaybe-uninitialized] 113 | add_seq_to_align(target, source->seqname[i], gaps, target_length, no_gui); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concatenate.cxx:100:9: note: ‘gaps’ was declared here 100 | char *gaps; | ^~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" trees.cxx statistics.cxx: In function ‘void geni_act(SEA_VIEW*)’: statistics.cxx:365:24: warning: variable ‘nbcp’ set but not used [-Wunused-but-set-variable=] 365 | int *selected, nbaa, nbcp; | ^~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" treedraw.cxx trees.cxx: In function ‘matrix* Obs_Dist(allseq*, model*)’: trees.cxx:1599:16: warning: variable ‘unc_len’ set but not used [-Wunused-but-set-variable=] 1599 | phydbl unc_len; | ^~~~~~~ trees.cxx: In function ‘matrix* K80_dist_nogamma(allseq*)’: trees.cxx:1741:16: warning: variable ‘unc_len’ set but not used [-Wunused-but-set-variable=] 1741 | phydbl unc_len; | ^~~~~~~ trees.cxx: In function ‘char* replace_tree_names_by_rank(const char*, char**, int)’: trees.cxx:2736:13: warning: variable ‘found’ set but not used [-Wunused-but-set-variable=] 2736 | int found = 0, i, l; | ^~~~~ trees.cxx: In function ‘void run_phyml_callback(Fl_Widget*, void*)’: trees.cxx:1309:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1309 | fread(bootstrap_trees, l, 1, in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ treedraw.cxx: In function ‘int compare_newick_with_names(const char*, char**, int, char**)’: treedraw.cxx:2936:13: warning: variable ‘found’ set but not used [-Wunused-but-set-variable=] 2936 | int found = 0, i, l, *seen, retval; | ^~~~~ trees.cxx: In function ‘void command_line_phylogeny(int, char**)’: trees.cxx:2823:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2823 | fread(utree, s, 1, in); | ~~~~~^~~~~~~~~~~~~~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" addbootstrap.cxx trees.cxx: In function ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’: trees.cxx:2434:25: warning: pointer ‘bootstrap_trees_72’ used after ‘realloc’ [-Wuse-after-free] 2434 | q = tmpc + (q - bootstrap_trees); | ~~^~~~~~~~~~~~~~~~~ trees.cxx:2433:38: note: call to ‘realloc’ here 2433 | char *tmpc = (char*)realloc(bootstrap_trees, lbtrees + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ trees.cxx: In function ‘run_phyml_callback(Fl_Widget*, void*)’: trees.cxx:1290:30: warning: pointer ‘b_tree_366’ used after ‘realloc’ [-Wuse-after-free] 1290 | q = tree2 + (q - b_tree); | ~~^~~~~~~~ trees.cxx:1289:38: note: call to ‘realloc’ here 1289 | tree2 = (char *)realloc(b_tree, l + 1); | ~~~~~~~^~~~~~~~~~~~~~~ statistics.cxx:366:43: warning: ‘compgroup’ may be used uninitialized [-Wmaybe-uninitialized] 366 | double **comp, *compall, compcomp[4], **compgroup, *compgroupall, min[4], max[4]; | ^~~~~~~~~ statistics.cxx:597:15: warning: ‘compgroupall’ may be used uninitialized [-Wmaybe-uninitialized] 597 | snprintf(p, ltext, "\n\nGroup %d : %.1f%%", i+1, compgroupall[i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ statistics.cxx:366:55: note: ‘compgroupall’ was declared here 366 | double **comp, *compall, compcomp[4], **compgroup, *compgroupall, min[4], max[4]; | ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:974, from seaview.h:3, from statistics.cxx:1: In function ‘snprintf’, inlined from ‘geni_act(_SEA_VIEW*)’ at statistics.cxx:653:15: /usr/include/bits/stdio2.h:68:35: warning: ‘titvmin’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’: statistics.cxx:367:77: note: ‘titvmin’ was declared here 367 | double P, Psum=0., Q, Qsum=0., Pmin=0, Pmax=0, Qmin=0, Qmax=0, titvratio, titvmin, titvmax, freq[16], mat_obs[16], *ti, *tv; | ^~~~~~~ In function ‘snprintf’, inlined from ‘geni_act(_SEA_VIEW*)’ at statistics.cxx:655:15: /usr/include/bits/stdio2.h:68:35: warning: ‘titvmax’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’: statistics.cxx:367:86: note: ‘titvmax’ was declared here 367 | double P, Psum=0., Q, Qsum=0., Pmin=0, Pmax=0, Qmin=0, Qmax=0, titvratio, titvmin, titvmax, freq[16], mat_obs[16], *ti, *tv; | ^~~~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" least_squares_brl.cxx least_squares_brl.cxx: In function ‘int tree_ctob(char*, char**, int, int**)’: least_squares_brl.cxx:190:23: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 190 | int i=0, j, k, fin=0, nbpo=0, | ^ least_squares_brl.cxx: In function ‘tree_btos(int**, int, double*, double*, double*, char**, noeud2**)’: least_squares_brl.cxx:310:48: warning: ‘tax1’ may be used uninitialized [-Wmaybe-uninitialized] 310 | int notuv, i, j, k, sommebi, tax1, tax2, n1=0, n2=0, n3=0, cpt1=-1; | ^~~~ least_squares_brl.cxx:374:41: warning: ‘tax2’ may be used uninitialized [-Wmaybe-uninitialized] 374 | p2 = bottomnode(arbre_s[tax2]); | ^~~~ least_squares_brl.cxx:310:54: note: ‘tax2’ was declared here 310 | int notuv, i, j, k, sommebi, tax1, tax2, n1=0, n2=0, n3=0, cpt1=-1; | ^~~~ least_squares_brl.cxx:349:17: warning: ‘sommebi’ may be used uninitialized [-Wmaybe-uninitialized] 349 | if (sommebi == 2) { | ^~ least_squares_brl.cxx:310:39: note: ‘sommebi’ was declared here 310 | int notuv, i, j, k, sommebi, tax1, tax2, n1=0, n2=0, n3=0, cpt1=-1; | ^~~~~~~ trees.cxx: In function ‘add_equally_best(char*, char*, int)’: trees.cxx:2047:46: warning: ‘]’ directive output may be truncated writing 1 byte into a region of size between 0 and 9 [-Wformat-truncation=] 2047 | snprintf(q, 30, "[equally best tree #%d]", ++rank); | ^ In file included from /usr/include/stdio.h:974, from seaview.h:3, from trees.cxx:6: In function ‘snprintf’, inlined from ‘add_equally_best(char*, char*, int)’ at trees.cxx:2047:15: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 23 and 32 bytes into a destination of size 30 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ trees.cxx: In function ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’: trees.cxx:2408:59: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 9 [-Wformat-truncation=] 2408 | snprintf(tmp, 30, "Bootstrap replicate: %d", j + 1); | ^~ In function ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’, inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2085:36: trees.cxx:2408:37: note: directive argument in the range [1, 2147483647] 2408 | snprintf(tmp, 30, "Bootstrap replicate: %d", j + 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’ at trees.cxx:2408:13, inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2085:36: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 23 and 32 bytes into a destination of size 30 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ trees.cxx: In function ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’: trees.cxx:2091:62: warning: ‘ best trees, ’ directive output may be truncated writing 13 bytes into a region of size between 12 and 21 [-Wformat-truncation=] 2091 | if (count_best > 1) snprintf(best, 35, "consensus of %d best trees, ", count_best); | ^~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2091:35: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 28 and 37 bytes into a destination of size 35 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’, inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2085:36: trees.cxx:2453:41: warning: ‘all_best’ may be used uninitialized [-Wmaybe-uninitialized] 2453 | if (count > 1) tree = add_equally_best(tree, all_best, count); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ trees.cxx: In function ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’: trees.cxx:2386:40: note: ‘all_best’ was declared here 2386 | char *tree, *newtree, *p, *q, *all_best, *bootstrap_trees = NULL; | ^~~~~~~~ addbootstrap.cxx: In function ‘compute_consensus_tree(char**, int**, int)’: c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" pseudoterminal.cxx addbootstrap.cxx:896:7: warning: ‘k’ may be used uninitialized [-Wmaybe-uninitialized] 896 | if (k < height) { // columns were not all identical, try columns on 0-side of branch i | ^~ addbootstrap.cxx:854:13: note: ‘k’ was declared here 854 | int i, j, k, l, w, word, restbranches, j1; | ^ In file included from /usr/include/FL/Fl_Return_Button.H:24, from seaview.h:18: In member function ‘Fl_Button::value() const’, inlined from ‘parsimony_dialog(_SEA_VIEW*)’ at trees.cxx:2288:26: /usr/include/FL/Fl_Button.H:102:30: warning: ‘thorough_b’ may be used uninitialized [-Wmaybe-uninitialized] 102 | char value() const {return value_;} | ^~~~~~ trees.cxx: In function ‘parsimony_dialog(_SEA_VIEW*)’: trees.cxx:2194:20: note: ‘thorough_b’ was declared here 2194 | Fl_Round_Button *thorough_b, *less_thorough_b; | ^~~~~~~~~~ In member function ‘Fl_Button::value() const’, inlined from ‘parsimony_dialog(_SEA_VIEW*)’ at trees.cxx:2289:36: /usr/include/FL/Fl_Button.H:102:30: warning: ‘less_thorough_b’ may be used uninitialized [-Wmaybe-uninitialized] 102 | char value() const {return value_;} | ^~~~~~ trees.cxx: In function ‘parsimony_dialog(_SEA_VIEW*)’: trees.cxx:2194:33: note: ‘less_thorough_b’ was declared here 2194 | Fl_Round_Button *thorough_b, *less_thorough_b; | ^~~~~~~~~~~~~~~ In file included from /usr/include/FL/Fl_Input.H:25, from seaview.h:16: In member function ‘Fl_Input_::value() const’, inlined from ‘parsimony_dialog(_SEA_VIEW*)’ at trees.cxx:2291:22: /usr/include/FL/Fl_Input_.H:244:37: warning: ‘w_best’ may be used uninitialized [-Wmaybe-uninitialized] 244 | const char* value() const {return value_;} | ^~~~~~ trees.cxx: In function ‘parsimony_dialog(_SEA_VIEW*)’: trees.cxx:2195:17: note: ‘w_best’ was declared here 2195 | Fl_Int_Input *w_best; | ^~~~~~ pseudoterminal.cxx: In function ‘int run_external_prog_in_pseudoterm(char*, const char*, const char*)’: pseudoterminal.cxx:354:24: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 354 | freopen( (dialogfname ? dialogfname : slavename), "r", stdin); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pseudoterminal.cxx:355:24: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 355 | freopen(slavename, "a", stderr); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" unrooted.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" pdf_or_ps.cxx trees.cxx: In function ‘run_distance_method(_SEA_VIEW*, int, int, int, int, int, Fl_Box*, char const*, int, char const*, char const*, int, void (*)(char const*, ...), int, int)’: trees.cxx:522:24: warning: ‘display_tree’ may be used uninitialized [-Wmaybe-uninitialized] 522 | return display_tree; | ^~~~~~~~~~~~ trees.cxx:461:15: note: ‘display_tree’ was declared here 461 | char *display_tree, *bootstrap_trees = NULL, *err_mess, tree_label[100]=""; | ^~~~~~~~~~~~ unrooted.cxx: In function ‘hit try_angle_draw(float, int*, int*, float*, int, int, int, int)’: unrooted.cxx:636:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 636 | if(x2 > xmax) xmax = x2; if(x3 > xmax) xmax = x3; if(x4 > xmax) xmax = x4; | ^~ unrooted.cxx:636:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 636 | if(x2 > xmax) xmax = x2; if(x3 > xmax) xmax = x3; if(x4 > xmax) xmax = x4; | ^~ unrooted.cxx:637:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 637 | if(x2 < xmin) xmin = x2; if(x3 < xmin) xmin = x3; if(x4 < xmin) xmin = x4; | ^~ unrooted.cxx:637:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 637 | if(x2 < xmin) xmin = x2; if(x3 < xmin) xmin = x3; if(x4 < xmin) xmin = x4; | ^~ unrooted.cxx:638:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 638 | if(y2 > ymax) ymax = y2; if(y3 > ymax) ymax = y3; if(y4 > ymax) ymax = y4; | ^~ unrooted.cxx:638:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 638 | if(y2 > ymax) ymax = y2; if(y3 > ymax) ymax = y3; if(y4 > ymax) ymax = y4; | ^~ unrooted.cxx:639:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 639 | if(y2 < ymin) ymin = y2; if(y3 < ymin) ymin = y3; if(y4 < ymin) ymin = y4; | ^~ unrooted.cxx:639:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 639 | if(y2 < ymin) ymin = y2; if(y3 < ymin) ymin = y3; if(y4 < ymin) ymin = y4; | ^~ unrooted.cxx: In function ‘int set_angles_noeuds(bignoeud*, bignoeud*, double, double*, double)’: unrooted.cxx:1084:20: warning: variable ‘totfeuilles’ set but not used [-Wunused-but-set-variable=] 1084 | static int totfeuilles=0; | ^~~~~~~~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" svg.cxx treedraw.cxx: In function ‘recur_ecrit_arbre(FD_nj_plot*, noeud*, char*, char*)’: treedraw.cxx:2652:40: warning: ‘%g’ directive output may be truncated writing between 1 and 13 bytes into a region of size 10 [-Wformat-truncation=] 2652 | snprintf(++arbre, 11,":%g",centre->l1); | ^~ treedraw.cxx:2652:38: note: assuming directive output of 12 bytes 2652 | snprintf(++arbre, 11,":%g",centre->l1); | ^~~~~ In file included from /usr/include/stdio.h:974, from /usr/include/FL/Fl_Preferences.H:25, from /usr/include/FL/Fl_Plugin.H:25, from /usr/include/FL/Fl_Device.H:29, from /usr/include/FL/Fl_Paged_Device.H:26, from /usr/include/FL/Fl_Printer.H:27, from treedraw.cxx:16: In function ‘snprintf’, inlined from ‘recur_ecrit_arbre(FD_nj_plot*, noeud*, char*, char*)’ at treedraw.cxx:2652:11: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 3 and 15 bytes into a destination of size 11 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ treedraw.cxx: In function ‘recur_ecrit_arbre(FD_nj_plot*, noeud*, char*, char*)’: treedraw.cxx:2661:40: warning: ‘%g’ directive output may be truncated writing between 1 and 13 bytes into a region of size 10 [-Wformat-truncation=] 2661 | snprintf(++arbre, 11,":%g",centre->l2); | ^~ treedraw.cxx:2661:38: note: assuming directive output of 12 bytes 2661 | snprintf(++arbre, 11,":%g",centre->l2); | ^~~~~ In function ‘snprintf’, inlined from ‘recur_ecrit_arbre(FD_nj_plot*, noeud*, char*, char*)’ at treedraw.cxx:2661:11: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 3 and 15 bytes into a destination of size 11 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ treedraw.cxx: In function ‘count_node(noeud*, noeud*)’: treedraw.cxx:3306:15: warning: argument 2 null where non-null expected [-Wnonnull] 3306 | if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from seaview.h:5, from treedraw.h:4, from treedraw.cxx:18: /usr/include/string.h:171:12: note: in a call to function ‘strcmp’ declared ‘nonnull’ 171 | extern int strcmp (const char *__s1, const char *__s2) | ^~~~~~ treedraw.cxx:3306:52: warning: argument 2 null where non-null expected [-Wnonnull] 3306 | if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/string.h:171:12: note: in a call to function ‘strcmp’ declared ‘nonnull’ 171 | extern int strcmp (const char *__s1, const char *__s2) | ^~~~~~ treedraw.cxx:3306:89: warning: argument 2 null where non-null expected [-Wnonnull] 3306 | if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/string.h:171:12: note: in a call to function ‘strcmp’ declared ‘nonnull’ 171 | extern int strcmp (const char *__s1, const char *__s2) | ^~~~~~ trees.cxx: In function ‘command_line_phylogeny(int, char**)’: trees.cxx:2871:3: warning: ‘tree’ may be used uninitialized [-Wmaybe-uninitialized] 2871 | if (tree) { | ^~ trees.cxx:2774:9: note: ‘tree’ was declared here 2774 | char *tree, *p; | ^~~~ unrooted.cxx:1123:48: warning: ‘poids1’ may be used uninitialized [-Wmaybe-uninitialized] 1123 | debut->position.angle = (poids1*angle1 + poids2*angle2)/(poids1+poids2); | ~~~~~~^~~~~~~ unrooted.cxx:1082:20: note: ‘poids1’ was declared here 1082 | int poids, poids1, poids2; | ^~~~~~ unrooted.cxx:1123:64: warning: ‘poids2’ may be used uninitialized [-Wmaybe-uninitialized] 1123 | debut->position.angle = (poids1*angle1 + poids2*angle2)/(poids1+poids2); | ~~~~~~^~~~~~~ unrooted.cxx:1082:28: note: ‘poids2’ was declared here 1082 | int poids, poids1, poids2; | ^~~~~~ unrooted.cxx:1130:16: warning: ‘poids’ may be used uninitialized [-Wmaybe-uninitialized] 1130 | return poids; | ^~~~~ unrooted.cxx:1082:13: note: ‘poids’ was declared here 1082 | int poids, poids1, poids2; | ^~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" threads.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" tbe.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" treerecs_draw.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" FL/Fl_SVG_Image.cxx tbe.cxx: In function ‘TBE_Compute(char*, char*)’: tbe.cxx:85:16: warning: pointer ‘ref_branches_65’ used after ‘free’ [-Wuse-after-free] 85 | TBE_PrintTree(newtree,fd_reftree,ref_branches, nboot); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tbe.cxx:83:7: note: call to ‘free’ here 83 | free(ref_branches); | ~~~~^~~~~~~~~~~~~~ cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/raa_acnuc.c csrc/raa_acnuc.c: In function ‘raa_bit1’: csrc/raa_acnuc.c:1086:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable=] 1086 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function ‘raa_bit0’: csrc/raa_acnuc.c:1096:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable=] 1096 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function ‘raa_copylist’: csrc/raa_acnuc.c:1117:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable=] 1117 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function ‘raa_zerolist’: csrc/raa_acnuc.c:1127:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable=] 1127 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function ‘raa_setliststate’: csrc/raa_acnuc.c:1137:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable=] 1137 | char *reponse, str_type[3]; | ^~~~~~~ cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/parser.c FL/Fl_SVG_Image.cxx: In function ‘svg_inflate(char const*)’: FL/Fl_SVG_Image.cxx:87:20: warning: pointer ‘out_26’ used after ‘realloc’ [-Wuse-after-free] 87 | p = tmp + (p - out); | ~~^~~~~ FL/Fl_SVG_Image.cxx:86:33: note: call to ‘realloc’ here 86 | char *tmp = (char*)realloc(out, out_size + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~ cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/md5.c csrc/md5.c:200:34: warning: argument 1 of type ‘uint32[4]’ {aka ‘unsigned int[4]’} with mismatched bound [-Warray-parameter=] 200 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~^~~~~~ csrc/md5.c:47:35: note: previously declared as ‘uint32 *’ {aka ‘unsigned int *’} 47 | static void MD5_Transform(uint32 *buf, uint32 const *in); | ~~~~~~~~^~~ csrc/md5.c:200:55: warning: argument 2 of type ‘const uint32[16]’ {aka ‘const unsigned int[16]’} with mismatched bound [-Warray-parameter=] 200 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~~~~~~~^~~~~~ csrc/md5.c:47:54: note: previously declared as ‘const uint32 *’ {aka ‘const unsigned int *’} 47 | static void MD5_Transform(uint32 *buf, uint32 const *in); | ~~~~~~~~~~~~~~^~ cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/zsockr.c cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/misc_acnuc.c cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/dnapars.c csrc/dnapars.c: In function ‘dnapars’: csrc/dnapars.c:1682:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1682 | fread(tree, L, 1, outtree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/protpars.c csrc/protpars.c: In function ‘protpars’: csrc/protpars.c:2096:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2096 | fread(tree, L, 1, outtree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/seq.c csrc/seq.c: In function ‘collapsetree’: csrc/seq.c:4015:11: warning: variable ‘j’ set but not used [-Wunused-but-set-variable=] 4015 | long i, j, index, index2, numd; | ^ cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/phylip.c csrc/phylip.c: In function ‘scan_eoln’: csrc/phylip.c:161:8: warning: variable ‘ch’ set but not used [-Wunused-but-set-variable=] 161 | char ch; | ^~ csrc/phylip.c: In function ‘get_command_name’: csrc/phylip.c:212:14: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 212 | last_slash = strrchr (vektor, DELIMITER); | ^ csrc/phylip.c: In function ‘stringnames_new’: csrc/phylip.c:2980:8: warning: variable ‘len’ set but not used [-Wunused-but-set-variable=] 2980 | long len, i; | ^~~ cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/lwl.c csrc/lwl.c: In function ‘prefastlwl’: csrc/lwl.c:412:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 412 | else | ^~~~ csrc/lwl.c:414:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 414 | aa[9] = 14;/* agc S */ | ^~ csrc/lwl.c:417:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 417 | else | ^~~~ csrc/lwl.c:419:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 419 | aa[11] = 14;/* agt S */ | ^~ csrc/lwl.c:422:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 422 | else | ^~~~ csrc/lwl.c:424:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 424 | aa[13] = 7;/* atc I */ | ^~ csrc/lwl.c:469:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 469 | else | ^~~~ csrc/lwl.c:471:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 471 | aa[57] = 10;/* tgc */ | ^~ cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/bionj.c cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/phyml_util.c csrc/phyml_util.c: In function ‘Warn_And_Exit’: csrc/phyml_util.c:47:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 47 | fscanf(stdin,"%c",&c); | ^~~~~~~~~~~~~~~~~~~~~ c++ -o seaview -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o tbe.o treerecs_draw.o Fl_SVG_Image.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o `fltk-config --use-images --ldflags` -ldl -lpthread -lz -Wl,-z,muldefs treedraw.cxx:43:16: warning: type ‘struct branche’ violates the C++ One Definition Rule [-Wodr] 43 | typedef struct branche { /* une branche definie par ses deux extremites */ | ^ addbootstrap.cxx:17:16: note: a different type is defined in another translation unit 17 | typedef struct branche { /* une branche definie par ses deux extremites */ | ^ addbootstrap.cxx:21:14: note: the first difference of corresponding definitions is field ‘bits’ 21 | int *bits; | ^ addbootstrap.cxx:17:16: note: a type with different number of fields is defined in another translation unit 17 | typedef struct branche { /* une branche definie par ses deux extremites */ | ^ use_mase_files.cxx:115:12: warning: ‘isarg’ violates the C++ One Definition Rule [-Wodr] 115 | extern int isarg(int argc, char *argv[], const char *arg); | ^ treedraw.cxx:3369:6: note: return value type mismatch 3369 | bool isarg(int argc, char *argv[], const char *arg) | ^ treedraw.cxx:3369:6: note: type ‘bool’ should match type ‘int’ treedraw.cxx:3369:6: note: ‘isarg’ was previously declared here treedraw.cxx:3369:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used In function ‘show_dot_plot’, inlined from ‘edit_menu_callback’ at seaview.cxx:2549:15: xfmatpt.cxx:124:21: warning: ‘free’ called on pointer ‘_839->seq1’ with nonzero offset 1 [-Wfree-nonheap-object] 124 | free(matpt->seq1+1); | ^ xfmatpt.cxx:125:21: warning: ‘free’ called on pointer ‘_839->seq2’ with nonzero offset 1 [-Wfree-nonheap-object] 125 | free(matpt->seq2+1); | ^ In function ‘really_close’, inlined from ‘exit_button_proc’ at xfmatpt.cxx:898:18: xfmatpt.cxx:889:5: warning: ‘free’ called on pointer ‘matpt_4(D)->seq1’ with nonzero offset 1 [-Wfree-nonheap-object] 889 | free(matpt->seq1 + 1); | ^ xfmatpt.cxx:890:5: warning: ‘free’ called on pointer ‘matpt_4(D)->seq2’ with nonzero offset 1 [-Wfree-nonheap-object] 890 | free(matpt->seq2 + 1); | ^ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.L8LoMQ + umask 022 + cd /builddir/build/BUILD/seaview-5.1-build + '[' /builddir/build/BUILD/seaview-5.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/seaview-5.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/seaview-5.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/seaview-5.1-build + mkdir /builddir/build/BUILD/seaview-5.1-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seaview + rm -rf /builddir/build/BUILD/seaview-5.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/seaview + mkdir -p /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/bin + mkdir -p /builddir/build/BUILD/seaview-5.1-build/BUILDROOT//usr/share/man/man1 + install -m 755 seaview /builddir/build/BUILD/seaview-5.1-build/BUILDROOT//usr/bin + desktop-file-install --dir /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/applications /builddir/build/SOURCES/seaview.desktop + mkdir -p /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/pixmaps/ + install -m 0644 -p seaview.xpm /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/pixmaps/seaview.xpm + install -m 0644 -p seaview.svg /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/pixmaps/seaview.svg + mkdir -p /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/appdata/ + install -m 0644 -p seaview.appdata.xml /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/appdata/seaview.appdata.xml + install -m 644 seaview.1 /builddir/build/BUILD/seaview-5.1-build/BUILDROOT//usr/share/man/man1 + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 5.1-2.fc44 --unique-debug-suffix -5.1-2.fc44.aarch64 --unique-debug-src-base seaview-5.1-2.fc44.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/seaview-5.1-build/seaview find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/seaview-5.1-2.fc44.aarch64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + COMPRESS='gzip -9 -n' + COMPRESS_EXT=.gz + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-det --brp -j4 /builddir/build/BUILD/seaview-5.1-build/BUILDROOT Scanned 19 directories and 61 files, processed 1 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors + /usr/bin/linkdupes --brp /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr Scanned 18 directories and 61 files, considered 61 files, read 2 files, linked 1 files, 0 errors sum of sizes of linked files: 3757 bytes Reading /builddir/build/BUILD/seaview-5.1-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.ZQhezw + umask 022 + cd /builddir/build/BUILD/seaview-5.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seaview + RPM_EC=0 ++ jobs -p + exit 0 Processing files: seaview-5.1-2.fc44.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.NoWVkn + umask 022 + cd /builddir/build/BUILD/seaview-5.1-build + cd seaview + DOCDIR=/builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/doc/seaview + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/doc/seaview + cp -pr /builddir/build/BUILD/seaview-5.1-build/seaview/seaview.1.xml /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/doc/seaview + cp -pr /builddir/build/BUILD/seaview-5.1-build/seaview/seaview.html /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/doc/seaview + RPM_EC=0 ++ jobs -p + exit 0 Provides: application() application(seaview.desktop) metainfo() metainfo(seaview.appdata.xml) seaview = 5.1-2.fc44 seaview(aarch-64) = 5.1-2.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: glibc >= 2.42.9000-17 ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfltk.so.1.3()(64bit) libfltk_images.so.1.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.43)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: seaview-debugsource-5.1-2.fc44.aarch64 Provides: seaview-debugsource = 5.1-2.fc44 seaview-debugsource(aarch-64) = 5.1-2.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seaview-debuginfo-5.1-2.fc44.aarch64 Provides: debuginfo(build-id) = b0962cfbd18d67f09daebfa6384cd4150fa3844e seaview-debuginfo = 5.1-2.fc44 seaview-debuginfo(aarch-64) = 5.1-2.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: seaview-debugsource(aarch-64) = 5.1-2.fc44 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/seaview-5.1-build/BUILDROOT Wrote: /builddir/build/RPMS/seaview-5.1-2.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/seaview-debugsource-5.1-2.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/seaview-debuginfo-5.1-2.fc44.aarch64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.WkGptK + umask 022 + cd /builddir/build/BUILD/seaview-5.1-build + test -d /builddir/build/BUILD/seaview-5.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/seaview-5.1-build + rm -rf /builddir/build/BUILD/seaview-5.1-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild seaview-5.1-2.fc44.src.rpm Finish: build phase for seaview-5.1-2.fc44.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1767222147.947595/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/seaview-5.1-2.fc44.src.rpm) Config(child) 0 minutes 29 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "seaview", "epoch": null, "version": "5.1", "release": "2.fc44", "arch": "aarch64" }, { "name": "seaview-debugsource", "epoch": null, "version": "5.1", "release": "2.fc44", "arch": "aarch64" }, { "name": "seaview-debuginfo", "epoch": null, "version": "5.1", "release": "2.fc44", "arch": "aarch64" }, { "name": "seaview", "epoch": null, "version": "5.1", "release": "2.fc44", "arch": "src" } ] } RPMResults finished