Warning: Permanently added '34.204.189.66' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9942846-fedora-rawhide-i386 --chroot fedora-rawhide-i386


Version: 1.6
PID: 8732
Logging PID: 8734
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 9942846,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-i386',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '949608b3daa0d02d6e22c879af1a435ba96f1d06',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/bionetgen',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'bionetgen',
 'package_version': '2.9.0-11',
 'project_dirname': 'mbp-gcc-16',
 'project_name': 'mbp-gcc-16',
 'project_owner': 'siddhesh',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/siddhesh/mbp-gcc-16/fedora-rawhide-i386/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'https://kojipkgs.fedoraproject.org/repos/f44-build-side-124978/latest/$basearch/',
            'id': 'https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch',
            'name': 'Additional repo https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch'}],
 'sandbox': 'siddhesh/mbp-gcc-16--siddhesh',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'siddhesh',
 'tags': [],
 'task_id': '9942846-fedora-rawhide-i386',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/bionetgen /var/lib/copr-rpmbuild/workspace/workdir-_fihx0m7/bionetgen --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/bionetgen', '/var/lib/copr-rpmbuild/workspace/workdir-_fihx0m7/bionetgen', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-_fihx0m7/bionetgen'...

Running: git checkout 949608b3daa0d02d6e22c879af1a435ba96f1d06 --

cmd: ['git', 'checkout', '949608b3daa0d02d6e22c879af1a435ba96f1d06', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-_fihx0m7/bionetgen
rc: 0
stdout: 
stderr: Note: switching to '949608b3daa0d02d6e22c879af1a435ba96f1d06'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 949608b automatic import of bionetgen

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-_fihx0m7/bionetgen
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading bionetgen-BioNetGen-2.9.0.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o bionetgen-BioNetGen-2.9.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/siddhesh/mbp-gcc-16/bionetgen/bionetgen-BioNetGen-2.9.0.tar.gz/md5/1b9d5df4ac2f34e1d5c187ffcc73df33/bionetgen-BioNetGen-2.9.0.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 40.0M  100 40.0M    0     0   485M      0 --:--:-- --:--:-- --:--:--  488M
INFO: Reading stdout from command: md5sum bionetgen-BioNetGen-2.9.0.tar.gz

tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_fihx0m7/bionetgen/bionetgen.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_fihx0m7/bionetgen --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1766664604.194588 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.6 starting (python version = 3.13.7, NVR = mock-6.6-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_fihx0m7/bionetgen/bionetgen.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_fihx0m7/bionetgen --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1766664604.194588 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-_fihx0m7/bionetgen/bionetgen.spec)  Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.6
INFO: Mock Version: 6.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1766664604.194588/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Tagging container image as mock-bootstrap-b9af75c4-28b4-406b-a432-97518f2c2efe
INFO: Checking that 22510d11cafbb8432e42074df9740f12f5d1ae024d1691e1e840a8a03ad9bb5a image matches host's architecture
INFO: Copy content of container 22510d11cafbb8432e42074df9740f12f5d1ae024d1691e1e840a8a03ad9bb5a to /var/lib/mock/fedora-rawhide-i686-bootstrap-1766664604.194588/root
INFO: mounting 22510d11cafbb8432e42074df9740f12f5d1ae024d1691e1e840a8a03ad9bb5a with podman image mount
INFO: image 22510d11cafbb8432e42074df9740f12f5d1ae024d1691e1e840a8a03ad9bb5a as /var/lib/containers/storage/overlay/4f59a40c897e1d5a3dc64832ecfad2706b8a96f39c21590f52d7f3ae0b9d8806/merged
INFO: umounting image 22510d11cafbb8432e42074df9740f12f5d1ae024d1691e1e840a8a03ad9bb5a (/var/lib/containers/storage/overlay/4f59a40c897e1d5a3dc64832ecfad2706b8a96f39c21590f52d7f3ae0b9d8806/merged) with podman image umount
INFO: Removing image mock-bootstrap-b9af75c4-28b4-406b-a432-97518f2c2efe
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1766664604.194588/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-1.fc44.x86_64
  rpm-sequoia-1.10.0-1.fc44.x86_64
  dnf5-5.3.0.0-3.fc44.x86_64
  dnf5-plugins-5.3.0.0-3.fc44.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 Copr repository                        100% |   2.1 MiB/s | 652.4 KiB |  00m00s
 local                                  100% |  26.4 MiB/s |  12.5 MiB |  00m00s
 Additional repo https_kojipkgs_fedorap 100% |  24.2 MiB/s |  12.4 MiB |  00m01s
Repositories loaded.
Package                            Arch   Version                      Repository                                                                        Size
Installing group/module packages:
 bash                              i686   0:5.3.0-2.fc44               copr_base                                                                      8.6 MiB
 bzip2                             i686   0:1.0.8-21.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  85.6 KiB
 coreutils                         i686   0:9.9-1.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   5.3 MiB
 cpio                              i686   0:2.15-6.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.1 MiB
 diffutils                         i686   0:3.12-3.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.5 MiB
 fedora-release                    noarch 0:44-0.10                    https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   0.0   B
 findutils                         i686   1:4.10.0-6.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 MiB
 gawk                              i686   0:5.3.2-2.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.8 MiB
 glibc-minimal-langpack            i686   0:2.42.9000-17.fc44          local                                                                          0.0   B
 grep                              i686   0:3.12-2.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.0 MiB
 gzip                              i686   0:1.14-1.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 396.8 KiB
 info                              i686   0:7.2-7.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 360.3 KiB
 patch                             i686   0:2.8-3.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 233.7 KiB
 redhat-rpm-config                 noarch 0:343-19.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 183.6 KiB
 rpm-build                         i686   0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 267.4 KiB
 sed                               i686   0:4.9-6.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 860.4 KiB
 shadow-utils                      i686   2:4.18.0-7.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.9 MiB
 tar                               i686   2:1.35-6.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.0 MiB
 unzip                             i686   0:6.0-68.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 395.8 KiB
 util-linux                        i686   0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.3 MiB
 which                             i686   0:2.23-3.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  78.1 KiB
 xz                                i686   1:5.8.1-4.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.3 MiB
Installing dependencies:
 R-srpm-macros                     noarch 0:1.3.0-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.2 KiB
 add-determinism                   i686   0:0.7.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.2 MiB
 alternatives                      i686   0:1.33-3.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  61.4 KiB
 ansible-srpm-macros               noarch 0:1-18.1.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  35.7 KiB
 audit-libs                        i686   0:4.1.2-2.fc44               copr_base                                                                    396.2 KiB
 binutils                          i686   0:2.45.50-9.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  27.2 MiB
 build-reproducibility-srpm-macros noarch 0:0.7.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.2 KiB
 bzip2-libs                        i686   0:1.0.8-21.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  79.8 KiB
 ca-certificates                   noarch 0:2025.2.80_v9.0.304-2.fc44  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.7 MiB
 cmake-srpm-macros                 noarch 0:3.31.10-3.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 524.0   B
 coreutils-common                  i686   0:9.9-1.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  11.2 MiB
 crypto-policies                   noarch 0:20251128-1.git19878fe.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 132.6 KiB
 curl                              i686   0:8.18.0~rc2-1.fc44          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 478.8 KiB
 cyrus-sasl-lib                    i686   0:2.1.28-33.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.5 MiB
 debugedit                         i686   0:5.2-3.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 218.6 KiB
 dwz                               i686   0:0.16-2.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 305.0 KiB
 ed                                i686   0:1.22.3-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 147.7 KiB
 efi-srpm-macros                   noarch 0:6-5.fc44                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  40.2 KiB
 elfutils                          i686   0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.6 MiB
 elfutils-debuginfod-client        i686   0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  74.3 KiB
 elfutils-default-yama-scope       noarch 0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.8 KiB
 elfutils-libelf                   i686   0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.1 MiB
 elfutils-libs                     i686   0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 733.9 KiB
 fedora-gpg-keys                   noarch 0:44-0.1                     https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 131.2 KiB
 fedora-release-common             noarch 0:44-0.10                    https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  20.6 KiB
 fedora-release-identity-basic     noarch 0:44-0.10                    https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 664.0   B
 fedora-repos                      noarch 0:44-0.1                     https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   4.9 KiB
 fedora-repos-rawhide              noarch 0:44-0.1                     https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.2 KiB
 file                              i686   0:5.46-8.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  95.2 KiB
 file-libs                         i686   0:5.46-8.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  11.9 MiB
 filesystem                        i686   0:3.18-50.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  94.0   B
 filesystem-srpm-macros            noarch 0:3.18-50.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  38.2 KiB
 fonts-srpm-macros                 noarch 1:5.0.0-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  55.8 KiB
 forge-srpm-macros                 noarch 0:0.4.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  38.9 KiB
 fpc-srpm-macros                   noarch 0:1.3-15.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 144.0   B
 gap-srpm-macros                   noarch 0:2-1.fc44                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.1 KiB
 gdb-minimal                       i686   0:16.3-6.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  13.8 MiB
 gdbm-libs                         i686   1:1.23-10.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 128.4 KiB
 ghc-srpm-macros                   noarch 0:1.9.2-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 779.0   B
 glibc                             i686   0:2.42.9000-17.fc44          local                                                                          5.7 MiB
 glibc-common                      i686   0:2.42.9000-17.fc44          local                                                                          1.0 MiB
 glibc-gconv-extra                 i686   0:2.42.9000-17.fc44          local                                                                          6.7 MiB
 gmp                               i686   1:6.3.0-4.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 734.2 KiB
 gnat-srpm-macros                  noarch 0:6-8.fc43                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.0 KiB
 gnulib-l10n                       noarch 0:20241231-1.fc44            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 655.0 KiB
 gnupg2                            i686   0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   6.6 MiB
 gnupg2-dirmngr                    i686   0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 646.0 KiB
 gnupg2-gpg-agent                  i686   0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 681.0 KiB
 gnupg2-gpgconf                    i686   0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 245.9 KiB
 gnupg2-keyboxd                    i686   0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 196.0 KiB
 gnupg2-verify                     i686   0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 359.4 KiB
 gnutls                            i686   0:3.8.11-6.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.8 MiB
 go-srpm-macros                    noarch 0:3.8.0-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  61.9 KiB
 gpgverify                         noarch 0:2.2-3.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   8.7 KiB
 ima-evm-utils-libs                i686   0:1.6.2-7.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  51.9 KiB
 jansson                           i686   0:2.14-3.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  88.3 KiB
 java-srpm-macros                  noarch 0:1-7.fc43                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 870.0   B
 json-c                            i686   0:0.18-7.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  85.9 KiB
 kernel-srpm-macros                noarch 0:1.0-27.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 KiB
 keyutils-libs                     i686   0:1.6.3-6.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  53.5 KiB
 krb5-libs                         i686   0:1.21.3-10.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.3 MiB
 libacl                            i686   0:2.3.2-4.fc44               copr_base                                                                     35.1 KiB
 libarchive                        i686   0:3.8.4-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.0 MiB
 libassuan                         i686   0:2.5.7-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 167.0 KiB
 libatomic                         i686   0:16.0.0-0.3.fc44            copr_base                                                                     27.5 KiB
 libattr                           i686   0:2.5.2-6.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  23.6 KiB
 libblkid                          i686   0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 285.3 KiB
 libbrotli                         i686   0:1.2.0-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 851.1 KiB
 libcap                            i686   0:2.77-1.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 193.8 KiB
 libcap-ng                         i686   0:0.8.5-8.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  67.4 KiB
 libcom_err                        i686   0:1.47.3-3.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  62.3 KiB
 libcurl                           i686   0:8.18.0~rc2-1.fc44          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.0 MiB
 libeconf                          i686   0:0.7.9-2.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  64.1 KiB
 libevent                          i686   0:2.1.12-16.fc43             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 939.3 KiB
 libfdisk                          i686   0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 423.7 KiB
 libffi                            i686   0:3.5.2-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  78.9 KiB
 libfsverity                       i686   0:1.6-3.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  27.8 KiB
 libgcc                            i686   0:16.0.0-0.3.fc44            copr_base                                                                    297.7 KiB
 libgcrypt                         i686   0:1.11.2-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.2 MiB
 libgomp                           i686   0:16.0.0-0.3.fc44            copr_base                                                                    573.9 KiB
 libgpg-error                      i686   0:1.58-1.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 935.9 KiB
 libidn2                           i686   0:2.3.8-2.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 551.8 KiB
 libksba                           i686   0:1.6.7-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 397.9 KiB
 liblastlog2                       i686   0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  32.1 KiB
 libmount                          i686   0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 411.7 KiB
 libnghttp2                        i686   0:1.68.0-2.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 161.5 KiB
 libnghttp3                        i686   0:1.14.0-1.fc44              local                                                                        163.0 KiB
 libpkgconf                        i686   0:2.3.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  76.6 KiB
 libpsl                            i686   0:0.21.5-6.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  75.7 KiB
 libselinux                        i686   0:3.9-5.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 212.4 KiB
 libselinux-utils                  i686   0:3.9-5.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 263.8 KiB
 libsemanage                       i686   0:3.9-4.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 319.9 KiB
 libsepol                          i686   0:3.9-2.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 873.3 KiB
 libsmartcols                      i686   0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 187.7 KiB
 libssh                            i686   0:0.11.3-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 613.0 KiB
 libssh-config                     noarch 0:0.11.3-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 277.0   B
 libstdc++                         i686   0:16.0.0-0.3.fc44            copr_base                                                                      2.9 MiB
 libtasn1                          i686   0:4.20.0-2.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 175.5 KiB
 libtool-ltdl                      i686   0:2.5.4-9.fc44               copr_base                                                                     73.3 KiB
 libunistring                      i686   0:1.1-10.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.7 MiB
 libusb1                           i686   0:1.0.29-4.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 178.5 KiB
 libuuid                           i686   0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  40.5 KiB
 libverto                          i686   0:0.3.2-11.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  24.7 KiB
 libxcrypt                         i686   0:4.5.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 296.7 KiB
 libxml2                           i686   0:2.12.10-5.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.8 MiB
 libzstd                           i686   0:1.5.7-3.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 920.0 KiB
 linkdupes                         i686   0:0.7.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 821.1 KiB
 lua-libs                          i686   0:5.4.8-4.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 309.4 KiB
 lua-srpm-macros                   noarch 0:1-16.fc43                  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.3 KiB
 lz4-libs                          i686   0:1.10.0-3.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 160.6 KiB
 mpfr                              i686   0:4.2.2-2.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 963.3 KiB
 ncurses-base                      noarch 0:6.5-8.20250614.fc44        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 328.1 KiB
 ncurses-libs                      i686   0:6.5-8.20250614.fc44        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 949.6 KiB
 nettle                            i686   0:3.10.1-2.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 776.6 KiB
 ngtcp2                            i686   0:1.18.0-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 373.7 KiB
 ngtcp2-crypto-ossl                i686   0:1.18.0-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  46.9 KiB
 npth                              i686   0:1.8-3.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  48.9 KiB
 ocaml-srpm-macros                 noarch 0:11-2.fc43                  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 KiB
 openblas-srpm-macros              noarch 0:2-20.fc43                  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 112.0   B
 openldap                          i686   0:2.6.10-4.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 673.0 KiB
 openssl-libs                      i686   1:3.5.4-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   7.3 MiB
 p11-kit                           i686   0:0.25.8-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.4 MiB
 p11-kit-trust                     i686   0:0.25.8-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 396.5 KiB
 package-notes-srpm-macros         noarch 0:0.5-14.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.6 KiB
 pam-libs                          i686   0:1.7.1-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 128.5 KiB
 pcre2                             i686   0:10.47-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 705.1 KiB
 pcre2-syntax                      noarch 0:10.47-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 281.9 KiB
 perl-srpm-macros                  noarch 0:1-60.fc43                  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 861.0   B
 pkgconf                           i686   0:2.3.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  82.9 KiB
 pkgconf-m4                        noarch 0:2.3.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  14.4 KiB
 pkgconf-pkg-config                i686   0:2.3.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 979.0   B
 policycoreutils                   i686   0:3.9-5.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 655.4 KiB
 popt                              i686   0:1.19-9.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 135.8 KiB
 publicsuffix-list-dafsa           noarch 0:20250616-2.fc43            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  69.1 KiB
 pyproject-srpm-macros             noarch 0:1.18.6-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 KiB
 python-srpm-macros                noarch 0:3.14-9.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  51.6 KiB
 qt5-srpm-macros                   noarch 0:5.15.18-1.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 500.0   B
 qt6-srpm-macros                   noarch 0:6.10.1-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 464.0   B
 readline                          i686   0:8.3-2.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 484.0 KiB
 rpm                               i686   0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.1 MiB
 rpm-build-libs                    i686   0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 267.1 KiB
 rpm-libs                          i686   0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 956.8 KiB
 rpm-plugin-selinux                i686   0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  11.1 KiB
 rpm-sequoia                       i686   0:1.10.0-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.7 MiB
 rpm-sign-libs                     i686   0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  30.9 KiB
 rust-srpm-macros                  noarch 0:28.4-1.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   5.5 KiB
 selinux-policy                    noarch 0:42.19-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  32.0 KiB
 selinux-policy-targeted           noarch 0:42.19-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  18.7 MiB
 setup                             noarch 0:2.15.0-27.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 724.9 KiB
 sqlite-libs                       i686   0:3.51.0-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.6 MiB
 systemd-libs                      i686   0:259-1.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.3 MiB
 systemd-standalone-sysusers       i686   0:259-1.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 292.7 KiB
 tpm2-tss                          i686   0:4.1.3-8.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.6 MiB
 tree-sitter-srpm-macros           noarch 0:0.4.2-1.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   8.3 KiB
 util-linux-core                   i686   0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.4 MiB
 xxhash-libs                       i686   0:0.8.3-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 113.5 KiB
 xz-libs                           i686   1:5.8.1-4.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 233.3 KiB
 zig-srpm-macros                   noarch 0:1-5.fc43                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.1 KiB
 zip                               i686   0:3.0-44.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 694.3 KiB
 zlib-ng-compat                    i686   0:2.3.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 184.9 KiB
 zstd                              i686   0:1.5.7-3.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 519.0 KiB
Installing groups:
 build                                                                                                                                                       

Transaction Summary:
 Installing:       183 packages

Total size of inbound packages is 68 MiB. Need to download 68 MiB.
After this operation, 218 MiB extra will be used (install 218 MiB, remove 0 B).
[  1/183] bash-0:5.3.0-2.fc44.i686      100% |  86.1 MiB/s |   1.9 MiB |  00m00s
[  2/183] bzip2-0:1.0.8-21.fc43.i686    100% | 685.4 KiB/s |  52.1 KiB |  00m00s
[  3/183] cpio-0:2.15-6.fc43.i686       100% |   2.7 MiB/s | 291.2 KiB |  00m00s
[  4/183] fedora-release-0:44-0.10.noar 100% |   1.0 MiB/s |  13.5 KiB |  00m00s
[  5/183] diffutils-0:3.12-3.fc43.i686  100% |   4.4 MiB/s | 390.2 KiB |  00m00s
[  6/183] coreutils-0:9.9-1.fc44.i686   100% |   6.6 MiB/s |   1.2 MiB |  00m00s
[  7/183] glibc-minimal-langpack-0:2.42 100% |   4.2 MiB/s |  72.8 KiB |  00m00s
[  8/183] grep-0:3.12-2.fc43.i686       100% |   9.5 MiB/s | 293.4 KiB |  00m00s
[  9/183] gzip-0:1.14-1.fc44.i686       100% |   9.8 MiB/s | 170.1 KiB |  00m00s
[ 10/183] findutils-1:4.10.0-6.fc43.i68 100% |   5.1 MiB/s | 548.7 KiB |  00m00s
[ 11/183] gawk-0:5.3.2-2.fc43.i686      100% |  11.1 MiB/s |   1.1 MiB |  00m00s
[ 12/183] info-0:7.2-7.fc44.i686        100% |  10.7 MiB/s | 186.2 KiB |  00m00s
[ 13/183] patch-0:2.8-3.fc44.i686       100% |   6.8 MiB/s | 118.7 KiB |  00m00s
[ 14/183] redhat-rpm-config-0:343-19.fc 100% |   4.8 MiB/s |  73.2 KiB |  00m00s
[ 15/183] rpm-build-0:6.0.1-1.fc44.i686 100% |   7.5 MiB/s | 130.9 KiB |  00m00s
[ 16/183] sed-0:4.9-6.fc44.i686         100% |   8.2 MiB/s | 310.6 KiB |  00m00s
[ 17/183] unzip-0:6.0-68.fc44.i686      100% |  11.1 MiB/s | 182.4 KiB |  00m00s
[ 18/183] tar-2:1.35-6.fc43.i686        100% |  19.2 MiB/s | 865.0 KiB |  00m00s
[ 19/183] shadow-utils-2:4.18.0-7.fc44. 100% |  20.2 MiB/s |   1.2 MiB |  00m00s
[ 20/183] which-0:2.23-3.fc43.i686      100% |   2.4 MiB/s |  41.8 KiB |  00m00s
[ 21/183] util-linux-0:2.41.3-8.fc44.i6 100% |  30.5 MiB/s |   1.2 MiB |  00m00s
[ 22/183] xz-1:5.8.1-4.fc44.i686        100% |  30.5 MiB/s | 561.6 KiB |  00m00s
[ 23/183] glibc-common-0:2.42.9000-17.f 100% |  22.4 MiB/s | 367.4 KiB |  00m00s
[ 24/183] xz-libs-1:5.8.1-4.fc44.i686   100% |   8.6 MiB/s | 123.5 KiB |  00m00s
[ 25/183] glibc-0:2.42.9000-17.fc44.i68 100% |  45.0 MiB/s |   2.1 MiB |  00m00s
[ 26/183] audit-libs-0:4.1.2-2.fc44.i68 100% |  47.8 MiB/s | 146.7 KiB |  00m00s
[ 27/183] libgcc-0:16.0.0-0.3.fc44.i686 100% |  62.8 MiB/s | 128.5 KiB |  00m00s
[ 28/183] glibc-gconv-extra-0:2.42.9000 100% |  35.3 MiB/s |   1.6 MiB |  00m00s
[ 29/183] libblkid-0:2.41.3-8.fc44.i686 100% |   8.8 MiB/s | 135.3 KiB |  00m00s
[ 30/183] filesystem-0:3.18-50.fc43.i68 100% |  62.7 MiB/s |   1.3 MiB |  00m00s
[ 31/183] libcap-ng-0:0.8.5-8.fc44.i686 100% |   1.8 MiB/s |  32.8 KiB |  00m00s
[ 32/183] libfdisk-0:2.41.3-8.fc44.i686 100% |  11.7 MiB/s | 179.3 KiB |  00m00s
[ 33/183] liblastlog2-0:2.41.3-8.fc44.i 100% |   1.5 MiB/s |  23.7 KiB |  00m00s
[ 34/183] libselinux-0:3.9-5.fc44.i686  100% |   7.1 MiB/s | 102.5 KiB |  00m00s
[ 35/183] libmount-0:2.41.3-8.fc44.i686 100% |   9.3 MiB/s | 171.9 KiB |  00m00s
[ 36/183] libsmartcols-0:2.41.3-8.fc44. 100% |   5.3 MiB/s |  86.7 KiB |  00m00s
[ 37/183] libuuid-0:2.41.3-8.fc44.i686  100% |   1.9 MiB/s |  27.7 KiB |  00m00s
[ 38/183] ncurses-libs-0:6.5-8.20250614 100% |  20.2 MiB/s | 352.3 KiB |  00m00s
[ 39/183] pam-libs-0:1.7.1-3.fc43.i686  100% |   3.7 MiB/s |  60.2 KiB |  00m00s
[ 40/183] readline-0:8.3-2.fc43.i686    100% |  14.0 MiB/s | 230.1 KiB |  00m00s
[ 41/183] systemd-libs-0:259-1.fc44.i68 100% |  40.4 MiB/s | 869.0 KiB |  00m00s
[ 42/183] util-linux-core-0:2.41.3-8.fc 100% |  26.9 MiB/s | 550.9 KiB |  00m00s
[ 43/183] zlib-ng-compat-0:2.3.2-2.fc44 100% |   7.3 MiB/s |  96.9 KiB |  00m00s
[ 44/183] libacl-0:2.3.2-4.fc44.i686    100% |  12.8 MiB/s |  26.2 KiB |  00m00s
[ 45/183] bzip2-libs-0:1.0.8-21.fc43.i6 100% |   2.5 MiB/s |  42.8 KiB |  00m00s
[ 46/183] libeconf-0:0.7.9-2.fc43.i686  100% |   2.3 MiB/s |  37.2 KiB |  00m00s
[ 47/183] libsemanage-0:3.9-4.fc44.i686 100% |   8.7 MiB/s | 133.4 KiB |  00m00s
[ 48/183] libstdc++-0:16.0.0-0.3.fc44.i 100% | 242.1 MiB/s | 991.8 KiB |  00m00s
[ 49/183] libxcrypt-0:4.5.2-2.fc44.i686 100% |   7.6 MiB/s | 131.5 KiB |  00m00s
[ 50/183] setup-0:2.15.0-27.fc44.noarch 100% |   9.8 MiB/s | 151.3 KiB |  00m00s
[ 51/183] debugedit-0:5.2-3.fc44.i686   100% |   4.0 MiB/s |  89.5 KiB |  00m00s
[ 52/183] elfutils-0:0.194-2.fc44.i686  100% |  25.7 MiB/s | 578.6 KiB |  00m00s
[ 53/183] file-0:5.46-8.fc44.i686       100% |   3.0 MiB/s |  48.9 KiB |  00m00s
[ 54/183] elfutils-libelf-0:0.194-2.fc4 100% |  11.3 MiB/s | 209.1 KiB |  00m00s
[ 55/183] binutils-0:2.45.50-9.fc44.i68 100% |  92.4 MiB/s |   6.1 MiB |  00m00s
[ 56/183] pkgconf-pkg-config-0:2.3.0-3. 100% | 597.0 KiB/s |   9.6 KiB |  00m00s
[ 57/183] libarchive-0:3.8.4-1.fc44.i68 100% |  21.6 MiB/s | 465.4 KiB |  00m00s
[ 58/183] popt-0:1.19-9.fc43.i686       100% |   4.3 MiB/s |  61.1 KiB |  00m00s
[ 59/183] rpm-0:6.0.1-1.fc44.i686       100% |  29.7 MiB/s | 548.0 KiB |  00m00s
[ 60/183] rpm-build-libs-0:6.0.1-1.fc44 100% |   8.2 MiB/s | 133.8 KiB |  00m00s
[ 61/183] rpm-libs-0:6.0.1-1.fc44.i686  100% |  26.4 MiB/s | 432.3 KiB |  00m00s
[ 62/183] zstd-0:1.5.7-3.fc44.i686      100% |  10.5 MiB/s | 193.6 KiB |  00m00s
[ 63/183] curl-0:8.18.0~rc2-1.fc44.i686 100% |  14.1 MiB/s | 246.0 KiB |  00m00s
[ 64/183] R-srpm-macros-0:1.3.0-1.fc44. 100% | 641.6 KiB/s |  10.3 KiB |  00m00s
[ 65/183] build-reproducibility-srpm-ma 100% | 857.1 KiB/s |  12.9 KiB |  00m00s
[ 66/183] ansible-srpm-macros-0:1-18.1. 100% |   1.3 MiB/s |  19.9 KiB |  00m00s
[ 67/183] cmake-srpm-macros-0:3.31.10-3 100% | 862.8 KiB/s |  10.4 KiB |  00m00s
[ 68/183] efi-srpm-macros-0:6-5.fc44.no 100% |   1.5 MiB/s |  22.5 KiB |  00m00s
[ 69/183] dwz-0:0.16-2.fc43.i686        100% |   7.6 MiB/s | 139.4 KiB |  00m00s
[ 70/183] filesystem-srpm-macros-0:3.18 100% |   2.1 MiB/s |  26.4 KiB |  00m00s
[ 71/183] fonts-srpm-macros-1:5.0.0-1.f 100% |   1.9 MiB/s |  27.3 KiB |  00m00s
[ 72/183] fpc-srpm-macros-0:1.3-15.fc43 100% | 607.0 KiB/s |   7.9 KiB |  00m00s
[ 73/183] forge-srpm-macros-0:0.4.0-3.f 100% |   1.3 MiB/s |  20.1 KiB |  00m00s
[ 74/183] gap-srpm-macros-0:2-1.fc44.no 100% | 603.6 KiB/s |   9.1 KiB |  00m00s
[ 75/183] ghc-srpm-macros-0:1.9.2-3.fc4 100% | 624.7 KiB/s |   8.7 KiB |  00m00s
[ 76/183] gnat-srpm-macros-0:6-8.fc43.n 100% | 530.4 KiB/s |   8.5 KiB |  00m00s
[ 77/183] go-srpm-macros-0:3.8.0-1.fc44 100% |   2.0 MiB/s |  28.3 KiB |  00m00s
[ 78/183] java-srpm-macros-0:1-7.fc43.n 100% | 611.0 KiB/s |   7.9 KiB |  00m00s
[ 79/183] kernel-srpm-macros-0:1.0-27.f 100% | 594.7 KiB/s |   8.9 KiB |  00m00s
[ 80/183] ocaml-srpm-macros-0:11-2.fc43 100% | 617.4 KiB/s |   9.3 KiB |  00m00s
[ 81/183] lua-srpm-macros-0:1-16.fc43.n 100% | 515.1 KiB/s |   8.8 KiB |  00m00s
[ 82/183] openblas-srpm-macros-0:2-20.f 100% | 506.3 KiB/s |   7.6 KiB |  00m00s
[ 83/183] package-notes-srpm-macros-0:0 100% | 691.2 KiB/s |   9.0 KiB |  00m00s
[ 84/183] perl-srpm-macros-0:1-60.fc43. 100% | 592.1 KiB/s |   8.3 KiB |  00m00s
[ 85/183] pyproject-srpm-macros-0:1.18. 100% | 887.6 KiB/s |  13.3 KiB |  00m00s
[ 86/183] python-srpm-macros-0:3.14-9.f 100% |   1.9 MiB/s |  23.8 KiB |  00m00s
[ 87/183] qt5-srpm-macros-0:5.15.18-1.f 100% | 614.5 KiB/s |   8.6 KiB |  00m00s
[ 88/183] qt6-srpm-macros-0:6.10.1-1.fc 100% | 623.8 KiB/s |   9.4 KiB |  00m00s
[ 89/183] rust-srpm-macros-0:28.4-1.fc4 100% | 837.4 KiB/s |  10.9 KiB |  00m00s
[ 90/183] tree-sitter-srpm-macros-0:0.4 100% | 953.6 KiB/s |  13.4 KiB |  00m00s
[ 91/183] zig-srpm-macros-0:1-5.fc43.no 100% | 562.3 KiB/s |   8.4 KiB |  00m00s
[ 92/183] zip-0:3.0-44.fc43.i686        100% |  16.2 MiB/s | 264.9 KiB |  00m00s
[ 93/183] pkgconf-0:2.3.0-3.fc43.i686   100% |   2.9 MiB/s |  44.7 KiB |  00m00s
[ 94/183] pkgconf-m4-0:2.3.0-3.fc43.noa 100% | 927.4 KiB/s |  13.9 KiB |  00m00s
[ 95/183] libpkgconf-0:2.3.0-3.fc43.i68 100% |   2.5 MiB/s |  41.0 KiB |  00m00s
[ 96/183] ed-0:1.22.3-1.fc44.i686       100% |   5.1 MiB/s |  83.4 KiB |  00m00s
[ 97/183] libattr-0:2.5.2-6.fc43.i686   100% |   1.0 MiB/s |  18.3 KiB |  00m00s
[ 98/183] ncurses-base-0:6.5-8.20250614 100% |   4.8 MiB/s |  63.5 KiB |  00m00s
[ 99/183] libsepol-0:3.9-2.fc43.i686    100% |  20.5 MiB/s | 356.4 KiB |  00m00s
[100/183] sqlite-libs-0:3.51.0-1.fc44.i 100% |  44.0 MiB/s | 811.5 KiB |  00m00s
[101/183] pcre2-0:10.47-1.fc44.i686     100% |  12.9 MiB/s | 263.6 KiB |  00m00s
[102/183] libxml2-0:2.12.10-5.fc44.i686 100% |  39.8 MiB/s | 733.1 KiB |  00m00s
[103/183] lz4-libs-0:1.10.0-3.fc43.i686 100% |   5.2 MiB/s |  79.4 KiB |  00m00s
[104/183] libzstd-0:1.5.7-3.fc44.i686   100% |  20.7 MiB/s | 359.5 KiB |  00m00s
[105/183] gmp-1:6.3.0-4.fc44.i686       100% |  16.9 MiB/s | 312.3 KiB |  00m00s
[106/183] openssl-libs-1:3.5.4-1.fc44.i 100% |  87.1 MiB/s |   2.6 MiB |  00m00s
[107/183] mpfr-0:4.2.2-2.fc43.i686      100% |  17.1 MiB/s | 385.1 KiB |  00m00s
[108/183] file-libs-0:5.46-8.fc44.i686  100% |  44.1 MiB/s | 857.7 KiB |  00m00s
[109/183] fedora-release-common-0:44-0. 100% |   1.6 MiB/s |  24.7 KiB |  00m00s
[110/183] elfutils-debuginfod-client-0: 100% |   2.7 MiB/s |  47.6 KiB |  00m00s
[111/183] elfutils-libs-0:0.194-2.fc44. 100% |  19.9 MiB/s | 305.1 KiB |  00m00s
[112/183] libcap-0:2.77-1.fc44.i686     100% |   4.8 MiB/s |  89.1 KiB |  00m00s
[113/183] coreutils-common-0:9.9-1.fc44 100% |  79.9 MiB/s |   2.1 MiB |  00m00s
[114/183] add-determinism-0:0.7.2-2.fc4 100% |  49.5 MiB/s | 912.6 KiB |  00m00s
[115/183] linkdupes-0:0.7.2-2.fc44.i686 100% |  20.7 MiB/s | 381.2 KiB |  00m00s
[116/183] libatomic-0:16.0.0-0.3.fc44.i 100% |  17.9 MiB/s |  18.3 KiB |  00m00s
[117/183] alternatives-0:1.33-3.fc44.i6 100% |   2.5 MiB/s |  41.3 KiB |  00m00s
[118/183] jansson-0:2.14-3.fc43.i686    100% |   3.3 MiB/s |  46.9 KiB |  00m00s
[119/183] libgomp-0:16.0.0-0.3.fc44.i68 100% | 121.3 MiB/s | 372.5 KiB |  00m00s
[120/183] lua-libs-0:5.4.8-4.fc44.i686  100% |   8.2 MiB/s | 150.4 KiB |  00m00s
[121/183] rpm-sequoia-0:1.10.0-1.fc44.i 100% |  48.5 MiB/s |   1.0 MiB |  00m00s
[122/183] rpm-sign-libs-0:6.0.1-1.fc44. 100% |   1.9 MiB/s |  28.5 KiB |  00m00s
[123/183] pcre2-syntax-0:10.47-1.fc44.n 100% |   9.5 MiB/s | 164.7 KiB |  00m00s
[124/183] crypto-policies-0:20251128-1. 100% |   4.9 MiB/s |  74.7 KiB |  00m00s
[125/183] ca-certificates-0:2025.2.80_v 100% |  50.1 MiB/s | 973.8 KiB |  00m00s
[126/183] fedora-release-identity-basic 100% | 951.8 KiB/s |  14.3 KiB |  00m00s
[127/183] fedora-repos-0:44-0.1.noarch  100% | 756.1 KiB/s |   9.1 KiB |  00m00s
[128/183] elfutils-default-yama-scope-0 100% | 735.0 KiB/s |  11.8 KiB |  00m00s
[129/183] gnulib-l10n-0:20241231-1.fc44 100% |  10.0 MiB/s | 143.0 KiB |  00m00s
[130/183] json-c-0:0.18-7.fc43.i686     100% |   2.6 MiB/s |  48.3 KiB |  00m00s
[131/183] libffi-0:3.5.2-1.fc44.i686    100% |   2.4 MiB/s |  39.0 KiB |  00m00s
[132/183] p11-kit-0:0.25.8-1.fc44.i686  100% |  28.8 MiB/s | 501.8 KiB |  00m00s
[133/183] p11-kit-trust-0:0.25.8-1.fc44 100% |   8.3 MiB/s | 144.6 KiB |  00m00s
[134/183] gnupg2-0:2.4.8-4.fc43.i686    100% |  66.3 MiB/s |   1.7 MiB |  00m00s
[135/183] ima-evm-utils-libs-0:1.6.2-7. 100% |   1.8 MiB/s |  29.9 KiB |  00m00s
[136/183] libfsverity-0:1.6-3.fc43.i686 100% |   1.1 MiB/s |  19.4 KiB |  00m00s
[137/183] gpgverify-0:2.2-3.fc43.noarch 100% | 793.1 KiB/s |  11.1 KiB |  00m00s
[138/183] libtasn1-0:4.20.0-2.fc43.i686 100% |   4.9 MiB/s |  75.7 KiB |  00m00s
[139/183] tpm2-tss-0:4.1.3-8.fc43.i686  100% |  20.1 MiB/s | 369.7 KiB |  00m00s
[140/183] libassuan-0:2.5.7-4.fc43.i686 100% |   4.9 MiB/s |  69.6 KiB |  00m00s
[141/183] gnupg2-verify-0:2.4.8-4.fc43. 100% |  10.7 MiB/s | 175.7 KiB |  00m00s
[142/183] libgcrypt-0:1.11.2-1.fc44.i68 100% |  28.2 MiB/s | 549.5 KiB |  00m00s
[143/183] libgpg-error-0:1.58-1.fc44.i6 100% |  15.2 MiB/s | 248.2 KiB |  00m00s
[144/183] npth-0:1.8-3.fc43.i686        100% |   1.1 MiB/s |  25.8 KiB |  00m00s
[145/183] gnupg2-dirmngr-0:2.4.8-4.fc43 100% |  16.7 MiB/s | 289.9 KiB |  00m00s
[146/183] gnupg2-gpg-agent-0:2.4.8-4.fc 100% |  17.5 MiB/s | 287.4 KiB |  00m00s
[147/183] gnupg2-gpgconf-0:2.4.8-4.fc43 100% |   7.3 MiB/s | 119.2 KiB |  00m00s
[148/183] gnupg2-keyboxd-0:2.4.8-4.fc43 100% |   5.9 MiB/s |  97.3 KiB |  00m00s
[149/183] fedora-gpg-keys-0:44-0.1.noar 100% |   8.9 MiB/s | 127.7 KiB |  00m00s
[150/183] fedora-repos-rawhide-0:44-0.1 100% | 617.7 KiB/s |   8.6 KiB |  00m00s
[151/183] libusb1-0:1.0.29-4.fc44.i686  100% |   4.8 MiB/s |  83.4 KiB |  00m00s
[152/183] libksba-0:1.6.7-4.fc43.i686   100% |  11.4 MiB/s | 162.9 KiB |  00m00s
[153/183] libtool-ltdl-0:2.5.4-9.fc44.i 100% |  18.8 MiB/s |  38.5 KiB |  00m00s
[154/183] gnutls-0:3.8.11-6.fc44.i686   100% |  59.0 MiB/s |   1.4 MiB |  00m00s
[155/183] openldap-0:2.6.10-4.fc44.i686 100% |  13.5 MiB/s | 277.4 KiB |  00m00s
[156/183] cyrus-sasl-lib-0:2.1.28-33.fc 100% |  49.3 MiB/s | 857.7 KiB |  00m00s
[157/183] libevent-0:2.1.12-16.fc43.i68 100% |  15.8 MiB/s | 275.7 KiB |  00m00s
[158/183] libidn2-0:2.3.8-2.fc43.i686   100% |   9.2 MiB/s | 170.0 KiB |  00m00s
[159/183] libunistring-0:1.1-10.fc43.i6 100% |  31.6 MiB/s | 550.9 KiB |  00m00s
[160/183] nettle-0:3.10.1-2.fc43.i686   100% |  23.9 MiB/s | 440.3 KiB |  00m00s
[161/183] gdbm-libs-1:1.23-10.fc43.i686 100% |   3.4 MiB/s |  59.6 KiB |  00m00s
[162/183] xxhash-libs-0:0.8.3-3.fc43.i6 100% |   2.6 MiB/s |  47.4 KiB |  00m00s
[163/183] gdb-minimal-0:16.3-6.fc44.i68 100% | 120.5 MiB/s |   4.8 MiB |  00m00s
[164/183] libcurl-0:8.18.0~rc2-1.fc44.i 100% |  18.9 MiB/s | 465.5 KiB |  00m00s
[165/183] selinux-policy-0:42.19-1.fc44 100% |   4.3 MiB/s |  65.4 KiB |  00m00s
[166/183] policycoreutils-0:3.9-5.fc44. 100% |  10.4 MiB/s | 191.1 KiB |  00m00s
[167/183] systemd-standalone-sysusers-0 100% |   9.6 MiB/s | 147.9 KiB |  00m00s
[168/183] selinux-policy-targeted-0:42. 100% | 143.4 MiB/s |   6.6 MiB |  00m00s
[169/183] rpm-plugin-selinux-0:6.0.1-1. 100% | 836.0 KiB/s |  19.2 KiB |  00m00s
[170/183] libselinux-utils-0:3.9-5.fc44 100% |   6.7 MiB/s | 110.5 KiB |  00m00s
[171/183] libbrotli-0:1.2.0-1.fc44.i686 100% |  20.7 MiB/s | 339.6 KiB |  00m00s
[172/183] krb5-libs-0:1.21.3-10.fc44.i6 100% |  37.5 MiB/s | 805.9 KiB |  00m00s
[173/183] libnghttp2-0:1.68.0-2.fc44.i6 100% |   4.2 MiB/s |  77.7 KiB |  00m00s
[174/183] libnghttp3-0:1.14.0-1.fc44.i6 100% |   5.2 MiB/s |  80.6 KiB |  00m00s
[175/183] libpsl-0:0.21.5-6.fc43.i686   100% |   3.6 MiB/s |  65.5 KiB |  00m00s
[176/183] ngtcp2-0:1.18.0-1.fc44.i686   100% |  11.3 MiB/s | 173.6 KiB |  00m00s
[177/183] libssh-0:0.11.3-1.fc44.i686   100% |  12.9 MiB/s | 250.8 KiB |  00m00s
[178/183] ngtcp2-crypto-ossl-0:1.18.0-1 100% |   1.7 MiB/s |  27.7 KiB |  00m00s
[179/183] libcom_err-0:1.47.3-3.fc44.i6 100% |   1.8 MiB/s |  27.3 KiB |  00m00s
[180/183] keyutils-libs-0:1.6.3-6.fc43. 100% |   1.8 MiB/s |  31.7 KiB |  00m00s
[181/183] libverto-0:0.3.2-11.fc43.i686 100% |   1.3 MiB/s |  21.1 KiB |  00m00s
[182/183] libssh-config-0:0.11.3-1.fc44 100% | 700.9 KiB/s |   9.1 KiB |  00m00s
[183/183] publicsuffix-list-dafsa-0:202 100% |   3.9 MiB/s |  59.2 KiB |  00m00s
--------------------------------------------------------------------------------
[183/183] Total                         100% |  51.8 MiB/s |  67.8 MiB |  00m01s
Running transaction
[  1/185] Verify package files          100% | 775.0   B/s | 183.0   B |  00m00s
>>> Running %pretrans scriptlet: filesystem-0:3.18-50.fc43.i686
>>> Finished %pretrans scriptlet: filesystem-0:3.18-50.fc43.i686
>>> [RPM] /var/lib/mock/fedora-rawhide-i686-1766664604.194588/root/var/cache/dnf/copr_base-7e55b3bc06c2f1cc/packages/bash-5.3.0-2.fc44.i686.rpm: Header OpenPGP V4 RSA/SHA256 signature, key ID 52ac7d71d4a9769d: NOKEY
[  2/185] Prepare transaction           100% |   3.9 KiB/s | 183.0   B |  00m00s
[  3/185] Installing libgcc-0:16.0.0-0. 100% | 292.4 MiB/s | 299.4 KiB |  00m00s
[  4/185] Installing publicsuffix-list- 100% |   0.0   B/s |  69.8 KiB |  00m00s
[  5/185] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  6/185] Installing gnulib-l10n-0:2024 100% | 215.5 MiB/s | 661.9 KiB |  00m00s
[  7/185] Installing coreutils-common-0 100% | 431.9 MiB/s |  11.2 MiB |  00m00s
[  8/185] Installing fedora-release-ide 100% |   0.0   B/s | 920.0   B |  00m00s
[  9/185] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[ 10/185] Installing fedora-gpg-keys-0: 100% |  58.3 MiB/s | 179.0 KiB |  00m00s
[ 11/185] Installing fedora-repos-0:44- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[ 12/185] Installing fedora-release-com 100% |  24.3 MiB/s |  24.9 KiB |  00m00s
[ 13/185] Installing fedora-release-0:4 100% |  20.2 KiB/s | 124.0   B |  00m00s
>>> Running sysusers scriptlet: setup-0:2.15.0-27.fc44.noarch
>>> Finished sysusers scriptlet: setup-0:2.15.0-27.fc44.noarch
>>> Scriptlet output:
>>> Creating group 'adm' with GID 4.
>>> Creating group 'audio' with GID 63.
>>> Creating group 'cdrom' with GID 11.
>>> Creating group 'clock' with GID 103.
>>> Creating group 'dialout' with GID 18.
>>> Creating group 'disk' with GID 6.
>>> Creating group 'floppy' with GID 19.
>>> Creating group 'ftp' with GID 50.
>>> Creating group 'games' with GID 20.
>>> Creating group 'input' with GID 104.
>>> Creating group 'kmem' with GID 9.
>>> Creating group 'kvm' with GID 36.
>>> Creating group 'lock' with GID 54.
>>> Creating group 'lp' with GID 7.
>>> Creating group 'mail' with GID 12.
>>> Creating group 'man' with GID 15.
>>> Creating group 'mem' with GID 8.
>>> Creating group 'nobody' with GID 65534.
>>> Creating group 'render' with GID 105.
>>> Creating group 'root' with GID 0.
>>> Creating group 'sgx' with GID 106.
>>> Creating group 'sys' with GID 3.
>>> Creating group 'tape' with GID 33.
>>> Creating group 'tty' with GID 5.
>>> Creating group 'users' with GID 100.
>>> Creating group 'utmp' with GID 22.
>>> Creating group 'video' with GID 39.
>>> Creating group 'wheel' with GID 10.
>>> Creating user 'adm' (adm) with UID 3 and GID 4.
>>> Creating group 'bin' with GID 1.
>>> Creating user 'bin' (bin) with UID 1 and GID 1.
>>> Creating group 'daemon' with GID 2.
>>> Creating user 'daemon' (daemon) with UID 2 and GID 2.
>>> Creating user 'ftp' (FTP User) with UID 14 and GID 50.
>>> Creating user 'games' (games) with UID 12 and GID 100.
>>> Creating user 'halt' (halt) with UID 7 and GID 0.
>>> Creating user 'lp' (lp) with UID 4 and GID 7.
>>> Creating user 'mail' (mail) with UID 8 and GID 12.
>>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534.
>>> Creating user 'operator' (operator) with UID 11 and GID 0.
>>> Creating user 'root' (Super User) with UID 0 and GID 0.
>>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0.
>>> Creating user 'sync' (sync) with UID 5 and GID 0.
>>> 
[ 14/185] Installing setup-0:2.15.0-27. 100% |  64.9 MiB/s | 730.6 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 15/185] Installing filesystem-0:3.18- 100% |   3.2 MiB/s | 212.2 KiB |  00m00s
[ 16/185] Installing pcre2-syntax-0:10. 100% | 277.7 MiB/s | 284.3 KiB |  00m00s
[ 17/185] Installing ncurses-base-0:6.5 100% | 115.1 MiB/s | 353.5 KiB |  00m00s
[ 18/185] Installing pkgconf-m4-0:2.3.0 100% |   0.0   B/s |  14.8 KiB |  00m00s
[ 19/185] Installing rust-srpm-macros-0 100% |   0.0   B/s |   6.4 KiB |  00m00s
[ 20/185] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 740.0   B |  00m00s
[ 21/185] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[ 22/185] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[ 23/185] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[ 24/185] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[ 25/185] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.1 KiB |  00m00s
[ 26/185] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[ 27/185] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[ 28/185] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 29/185] Installing gap-srpm-macros-0: 100% |   0.0   B/s |   2.7 KiB |  00m00s
[ 30/185] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[ 31/185] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[ 32/185] Installing bash-0:5.3.0-2.fc4 100% | 306.8 MiB/s |   8.6 MiB |  00m00s
[ 33/185] Installing glibc-common-0:2.4 100% |  73.0 MiB/s |   1.0 MiB |  00m00s
[ 34/185] Installing glibc-gconv-extra- 100% | 309.4 MiB/s |   6.8 MiB |  00m00s
[ 35/185] Installing glibc-0:2.42.9000- 100% | 189.7 MiB/s |   5.7 MiB |  00m00s
[ 36/185] Installing ncurses-libs-0:6.5 100% | 311.2 MiB/s | 956.1 KiB |  00m00s
[ 37/185] Installing glibc-minimal-lang 100% |  24.2 KiB/s | 124.0   B |  00m00s
[ 38/185] Installing crypto-policies-0: 100% |  38.5 MiB/s | 157.7 KiB |  00m00s
[ 39/185] Installing filesystem-srpm-ma 100% |   0.0   B/s |  38.9 KiB |  00m00s
[ 40/185] Installing elfutils-default-y 100% | 510.7 KiB/s |   2.0 KiB |  00m00s
[ 41/185] Installing zlib-ng-compat-0:2 100% | 181.3 MiB/s | 185.6 KiB |  00m00s
[ 42/185] Installing bzip2-libs-0:1.0.8 100% |   0.0   B/s |  80.9 KiB |  00m00s
[ 43/185] Installing libgpg-error-0:1.5 100% |  70.7 MiB/s | 941.8 KiB |  00m00s
[ 44/185] Installing libassuan-0:2.5.7- 100% | 164.9 MiB/s | 168.8 KiB |  00m00s
[ 45/185] Installing libgcrypt-0:1.11.2 100% | 416.7 MiB/s |   1.3 MiB |  00m00s
[ 46/185] Installing readline-0:8.3-2.f 100% | 474.7 MiB/s | 486.1 KiB |  00m00s
[ 47/185] Installing xz-libs-1:5.8.1-4. 100% | 228.9 MiB/s | 234.4 KiB |  00m00s
[ 48/185] Installing libuuid-0:2.41.3-8 100% |   0.0   B/s |  41.6 KiB |  00m00s
[ 49/185] Installing gmp-1:6.3.0-4.fc44 100% | 359.6 MiB/s | 736.5 KiB |  00m00s
[ 50/185] Installing popt-0:1.19-9.fc43 100% |  69.5 MiB/s | 142.4 KiB |  00m00s
[ 51/185] Installing libzstd-0:1.5.7-3. 100% | 449.8 MiB/s | 921.2 KiB |  00m00s
[ 52/185] Installing elfutils-libelf-0: 100% | 564.1 MiB/s |   1.1 MiB |  00m00s
[ 53/185] Installing npth-0:1.8-3.fc43. 100% |   0.0   B/s |  50.0 KiB |  00m00s
[ 54/185] Installing elfutils-libs-0:0. 100% | 359.2 MiB/s | 735.7 KiB |  00m00s
[ 55/185] Installing libblkid-0:2.41.3- 100% | 279.6 MiB/s | 286.3 KiB |  00m00s
[ 56/185] Installing systemd-libs-0:259 100% | 389.8 MiB/s |   2.3 MiB |  00m00s
[ 57/185] Installing libxcrypt-0:4.5.2- 100% | 292.4 MiB/s | 299.4 KiB |  00m00s
[ 58/185] Installing libsepol-0:3.9-2.f 100% | 426.9 MiB/s | 874.3 KiB |  00m00s
[ 59/185] Installing sqlite-libs-0:3.51 100% | 402.7 MiB/s |   1.6 MiB |  00m00s
[ 60/185] Installing gnupg2-gpgconf-0:2 100% |  24.2 MiB/s | 248.0 KiB |  00m00s
[ 61/185] Installing libattr-0:2.5.2-6. 100% |   0.0   B/s |  24.6 KiB |  00m00s
[ 62/185] Installing libacl-0:2.3.2-4.f 100% |   0.0   B/s |  35.9 KiB |  00m00s
[ 63/185] Installing pcre2-0:10.47-1.fc 100% | 345.0 MiB/s | 706.5 KiB |  00m00s
[ 64/185] Installing libselinux-0:3.9-5 100% | 208.6 MiB/s | 213.6 KiB |  00m00s
[ 65/185] Installing grep-0:3.12-2.fc43 100% |  77.1 MiB/s |   1.0 MiB |  00m00s
[ 66/185] Installing sed-0:4.9-6.fc44.i 100% |  65.3 MiB/s | 868.6 KiB |  00m00s
[ 67/185] Installing findutils-1:4.10.0 100% | 134.0 MiB/s |   1.9 MiB |  00m00s
[ 68/185] Installing libtasn1-0:4.20.0- 100% | 173.2 MiB/s | 177.4 KiB |  00m00s
[ 69/185] Installing libunistring-0:1.1 100% | 433.5 MiB/s |   1.7 MiB |  00m00s
[ 70/185] Installing libidn2-0:2.3.8-2. 100% | 181.6 MiB/s | 557.9 KiB |  00m00s
[ 71/185] Installing xz-1:5.8.1-4.fc44. 100% |  95.5 MiB/s |   1.3 MiB |  00m00s
[ 72/185] Installing libmount-0:2.41.3- 100% | 403.2 MiB/s | 412.9 KiB |  00m00s
[ 73/185] Installing gnupg2-verify-0:2. 100% |  32.0 MiB/s | 360.6 KiB |  00m00s
[ 74/185] Installing dwz-0:0.16-2.fc43. 100% |  29.9 MiB/s | 306.4 KiB |  00m00s
[ 75/185] Installing mpfr-0:4.2.2-2.fc4 100% | 314.1 MiB/s | 964.9 KiB |  00m00s
[ 76/185] Installing gawk-0:5.3.2-2.fc4 100% | 120.7 MiB/s |   1.8 MiB |  00m00s
[ 77/185] Installing libksba-0:1.6.7-4. 100% | 391.0 MiB/s | 400.4 KiB |  00m00s
[ 78/185] Installing unzip-0:6.0-68.fc4 100% |  35.4 MiB/s | 399.3 KiB |  00m00s
[ 79/185] Installing file-libs-0:5.46-8 100% | 741.8 MiB/s |  11.9 MiB |  00m00s
[ 80/185] Installing file-0:5.46-8.fc44 100% |   9.4 MiB/s |  96.7 KiB |  00m00s
[ 81/185] Installing diffutils-0:3.12-3 100% | 111.3 MiB/s |   1.6 MiB |  00m00s
[ 82/185] Installing libcap-ng-0:0.8.5- 100% |   0.0   B/s |  69.2 KiB |  00m00s
[ 83/185] Installing audit-libs-0:4.1.2 100% | 194.7 MiB/s | 398.8 KiB |  00m00s
[ 84/185] Installing libsemanage-0:3.9- 100% | 314.2 MiB/s | 321.7 KiB |  00m00s
[ 85/185] Installing libsmartcols-0:2.4 100% | 184.3 MiB/s | 188.7 KiB |  00m00s
[ 86/185] Installing libeconf-0:0.7.9-2 100% |   0.0   B/s |  65.8 KiB |  00m00s
[ 87/185] Installing pam-libs-0:1.7.1-3 100% | 127.8 MiB/s | 130.9 KiB |  00m00s
[ 88/185] Installing libcap-0:2.77-1.fc 100% |  17.7 MiB/s | 198.9 KiB |  00m00s
[ 89/185] Installing alternatives-0:1.3 100% |   6.1 MiB/s |  62.9 KiB |  00m00s
[ 90/185] Installing lua-libs-0:5.4.8-4 100% | 303.6 MiB/s | 310.9 KiB |  00m00s
[ 91/185] Installing json-c-0:0.18-7.fc 100% |   0.0   B/s |  87.2 KiB |  00m00s
[ 92/185] Installing libffi-0:3.5.2-1.f 100% |  78.4 MiB/s |  80.3 KiB |  00m00s
[ 93/185] Installing p11-kit-0:0.25.8-1 100% | 142.2 MiB/s |   2.4 MiB |  00m00s
[ 94/185] Installing p11-kit-trust-0:0. 100% |  22.9 MiB/s | 398.3 KiB |  00m00s
[ 95/185] Installing ngtcp2-0:1.18.0-1. 100% | 366.4 MiB/s | 375.2 KiB |  00m00s
[ 96/185] Installing openssl-libs-1:3.5 100% | 405.1 MiB/s |   7.3 MiB |  00m00s
[ 97/185] Installing coreutils-0:9.9-1. 100% | 192.4 MiB/s |   5.4 MiB |  00m00s
[ 98/185] Installing ca-certificates-0: 100% |   1.8 MiB/s |   2.5 MiB |  00m01s
[ 99/185] Installing gzip-0:1.14-1.fc44 100% |  32.7 MiB/s | 402.4 KiB |  00m00s
[100/185] Installing rpm-sequoia-0:1.10 100% | 392.3 MiB/s |   2.7 MiB |  00m00s
[101/185] Installing libfsverity-0:1.6- 100% |   0.0   B/s |  28.8 KiB |  00m00s
[102/185] Installing libevent-0:2.1.12- 100% | 307.0 MiB/s | 943.0 KiB |  00m00s
[103/185] Installing ngtcp2-crypto-ossl 100% |   0.0   B/s |  47.8 KiB |  00m00s
[104/185] Installing util-linux-core-0: 100% |  92.3 MiB/s |   1.4 MiB |  00m00s
[105/185] Installing zip-0:3.0-44.fc43. 100% |  56.8 MiB/s | 698.2 KiB |  00m00s
[106/185] Installing gnupg2-keyboxd-0:2 100% |  38.5 MiB/s | 197.3 KiB |  00m00s
[107/185] Installing libpsl-0:0.21.5-6. 100% |  75.0 MiB/s |  76.8 KiB |  00m00s
[108/185] Installing tar-2:1.35-6.fc43. 100% | 166.6 MiB/s |   3.0 MiB |  00m00s
[109/185] Installing linkdupes-0:0.7.2- 100% |  66.9 MiB/s | 822.5 KiB |  00m00s
[110/185] Installing libselinux-utils-0 100% |  22.6 MiB/s | 278.2 KiB |  00m00s
[111/185] Installing liblastlog2-0:2.41 100% |   6.6 MiB/s |  34.0 KiB |  00m00s
[112/185] Installing systemd-standalone 100% |  23.9 MiB/s | 293.2 KiB |  00m00s
[113/185] Installing libusb1-0:1.0.29-4 100% |  29.3 MiB/s | 180.2 KiB |  00m00s
>>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.i686
>>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.i686
>>> Scriptlet output:
>>> Creating group 'tss' with GID 59.
>>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59.
>>> 
[114/185] Installing tpm2-tss-0:4.1.3-8 100% | 326.1 MiB/s |   1.6 MiB |  00m00s
[115/185] Installing ima-evm-utils-libs 100% |   0.0   B/s |  53.2 KiB |  00m00s
[116/185] Installing gnupg2-gpg-agent-0 100% |  39.3 MiB/s | 684.9 KiB |  00m00s
[117/185] Installing libfdisk-0:2.41.3- 100% | 207.4 MiB/s | 424.7 KiB |  00m00s
[118/185] Installing util-linux-0:2.41. 100% | 115.5 MiB/s |   3.3 MiB |  00m00s
[119/185] Installing policycoreutils-0: 100% |  31.8 MiB/s | 683.6 KiB |  00m00s
[120/185] Installing selinux-policy-0:4 100% |   2.1 MiB/s |  33.6 KiB |  00m00s
[121/185] Installing selinux-policy-tar 100% | 219.3 MiB/s |  14.9 MiB |  00m00s
[122/185] Installing nettle-0:3.10.1-2. 100% | 253.8 MiB/s | 779.7 KiB |  00m00s
[123/185] Installing gnutls-0:3.8.11-6. 100% | 424.5 MiB/s |   3.8 MiB |  00m00s
[124/185] Installing libxml2-0:2.12.10- 100% | 120.2 MiB/s |   1.8 MiB |  00m00s
[125/185] Installing bzip2-0:1.0.8-21.f 100% |   8.8 MiB/s |  90.1 KiB |  00m00s
[126/185] Installing add-determinism-0: 100% | 144.3 MiB/s |   2.2 MiB |  00m00s
[127/185] Installing build-reproducibil 100% |   0.0   B/s |   1.5 KiB |  00m00s
[128/185] Installing cpio-0:2.15-6.fc43 100% |  85.0 MiB/s |   1.1 MiB |  00m00s
[129/185] Installing libpkgconf-0:2.3.0 100% |   0.0   B/s |  77.7 KiB |  00m00s
[130/185] Installing pkgconf-0:2.3.0-3. 100% |   8.3 MiB/s |  85.4 KiB |  00m00s
[131/185] Installing pkgconf-pkg-config 100% | 176.6 KiB/s |   1.8 KiB |  00m00s
[132/185] Installing ed-0:1.22.3-1.fc44 100% |  13.3 MiB/s | 150.0 KiB |  00m00s
[133/185] Installing patch-0:2.8-3.fc44 100% |  23.0 MiB/s | 235.2 KiB |  00m00s
[134/185] Installing lz4-libs-0:1.10.0- 100% | 157.9 MiB/s | 161.7 KiB |  00m00s
[135/185] Installing libarchive-0:3.8.4 100% | 334.9 MiB/s |   1.0 MiB |  00m00s
[136/185] Installing jansson-0:2.14-3.f 100% |  87.5 MiB/s |  89.6 KiB |  00m00s
[137/185] Installing libatomic-0:16.0.0 100% |   0.0   B/s |  28.4 KiB |  00m00s
[138/185] Installing libstdc++-0:16.0.0 100% | 418.2 MiB/s |   2.9 MiB |  00m00s
[139/185] Installing rpm-libs-0:6.0.1-1 100% | 312.0 MiB/s | 958.3 KiB |  00m00s
[140/185] Installing zstd-0:1.5.7-3.fc4 100% |  46.4 MiB/s | 522.6 KiB |  00m00s
[141/185] Installing libgomp-0:16.0.0-0 100% | 561.8 MiB/s | 575.3 KiB |  00m00s
[142/185] Installing libtool-ltdl-0:2.5 100% |   0.0   B/s |  74.4 KiB |  00m00s
[143/185] Installing gdbm-libs-1:1.23-1 100% | 127.0 MiB/s | 130.1 KiB |  00m00s
[144/185] Installing cyrus-sasl-lib-0:2 100% | 164.9 MiB/s |   2.5 MiB |  00m00s
[145/185] Installing openldap-0:2.6.10- 100% | 330.5 MiB/s | 676.8 KiB |  00m00s
[146/185] Installing gnupg2-dirmngr-0:2 100% |  37.3 MiB/s | 648.7 KiB |  00m00s
[147/185] Installing gnupg2-0:2.4.8-4.f 100% | 265.6 MiB/s |   6.6 MiB |  00m00s
[148/185] Installing gpgverify-0:2.2-3. 100% |   0.0   B/s |   9.4 KiB |  00m00s
[149/185] Installing rpm-sign-libs-0:6. 100% |   0.0   B/s |  31.8 KiB |  00m00s
[150/185] Installing rpm-build-libs-0:6 100% | 261.6 MiB/s | 267.9 KiB |  00m00s
[151/185] Installing xxhash-libs-0:0.8. 100% |   0.0   B/s | 114.9 KiB |  00m00s
[152/185] Installing libbrotli-0:1.2.0- 100% | 277.8 MiB/s | 853.4 KiB |  00m00s
[153/185] Installing libnghttp2-0:1.68. 100% | 158.8 MiB/s | 162.6 KiB |  00m00s
[154/185] Installing libnghttp3-0:1.14. 100% | 160.6 MiB/s | 164.4 KiB |  00m00s
[155/185] Installing keyutils-libs-0:1. 100% |   0.0   B/s |  54.9 KiB |  00m00s
[156/185] Installing libcom_err-0:1.47. 100% |   0.0   B/s |  63.4 KiB |  00m00s
[157/185] Installing libverto-0:0.3.2-1 100% |   0.0   B/s |  26.5 KiB |  00m00s
[158/185] Installing krb5-libs-0:1.21.3 100% | 331.5 MiB/s |   2.3 MiB |  00m00s
[159/185] Installing libssh-0:0.11.3-1. 100% | 300.3 MiB/s | 615.1 KiB |  00m00s
[160/185] Installing libcurl-0:8.18.0~r 100% | 332.0 MiB/s |   1.0 MiB |  00m00s
[161/185] Installing elfutils-debuginfo 100% |   6.8 MiB/s |  76.6 KiB |  00m00s
[162/185] Installing binutils-0:2.45.50 100% | 383.3 MiB/s |  27.2 MiB |  00m00s
[163/185] Installing elfutils-0:0.194-2 100% | 152.7 MiB/s |   2.6 MiB |  00m00s
[164/185] Installing gdb-minimal-0:16.3 100% | 337.8 MiB/s |  13.9 MiB |  00m00s
[165/185] Installing debugedit-0:5.2-3. 100% |  19.7 MiB/s | 221.9 KiB |  00m00s
[166/185] Installing curl-0:8.18.0~rc2- 100% |  26.1 MiB/s | 481.4 KiB |  00m00s
[167/185] Installing rpm-0:6.0.1-1.fc44 100% |  93.7 MiB/s |   2.5 MiB |  00m00s
[168/185] Installing cmake-srpm-macros- 100% |   0.0   B/s | 804.0   B |  00m00s
[169/185] Installing efi-srpm-macros-0: 100% |   0.0   B/s |  41.2 KiB |  00m00s
[170/185] Installing java-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[171/185] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[172/185] Installing tree-sitter-srpm-m 100% |   0.0   B/s |   9.3 KiB |  00m00s
[173/185] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[174/185] Installing redhat-rpm-config- 100% | 185.4 MiB/s | 189.9 KiB |  00m00s
[175/185] Installing forge-srpm-macros- 100% |   0.0   B/s |  40.3 KiB |  00m00s
[176/185] Installing fonts-srpm-macros- 100% |   0.0   B/s |  57.0 KiB |  00m00s
[177/185] Installing go-srpm-macros-0:3 100% |   0.0   B/s |  63.0 KiB |  00m00s
[178/185] Installing R-srpm-macros-0:1. 100% |   0.0   B/s |   4.0 KiB |  00m00s
[179/185] Installing python-srpm-macros 100% |   0.0   B/s |  52.9 KiB |  00m00s
[180/185] Installing rpm-build-0:6.0.1- 100% |  22.5 MiB/s | 276.5 KiB |  00m00s
[181/185] Installing pyproject-srpm-mac 100% |   0.0   B/s |   2.5 KiB |  00m00s
[182/185] Installing rpm-plugin-selinux 100% |   0.0   B/s |  12.2 KiB |  00m00s
[183/185] Installing which-0:2.23-3.fc4 100% |   5.2 MiB/s |  80.3 KiB |  00m00s
[184/185] Installing shadow-utils-2:4.1 100% | 164.1 MiB/s |   3.9 MiB |  00m00s
[185/185] Installing info-0:7.2-7.fc44. 100% |  58.9 KiB/s | 360.7 KiB |  00m06s
Warning: skipped OpenPGP checks for 183 packages from repositories: copr_base, https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch, local
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: R-srpm-macros-1.3.0-1.fc44.noarch
add-determinism-0.7.2-2.fc44.i686
alternatives-1.33-3.fc44.i686
ansible-srpm-macros-1-18.1.fc43.noarch
audit-libs-4.1.2-2.fc44.i686
bash-5.3.0-2.fc44.i686
binutils-2.45.50-9.fc44.i686
build-reproducibility-srpm-macros-0.7.2-2.fc44.noarch
bzip2-1.0.8-21.fc43.i686
bzip2-libs-1.0.8-21.fc43.i686
ca-certificates-2025.2.80_v9.0.304-2.fc44.noarch
cmake-srpm-macros-3.31.10-3.fc44.noarch
coreutils-9.9-1.fc44.i686
coreutils-common-9.9-1.fc44.i686
cpio-2.15-6.fc43.i686
crypto-policies-20251128-1.git19878fe.fc44.noarch
curl-8.18.0~rc2-1.fc44.i686
cyrus-sasl-lib-2.1.28-33.fc44.i686
debugedit-5.2-3.fc44.i686
diffutils-3.12-3.fc43.i686
dwz-0.16-2.fc43.i686
ed-1.22.3-1.fc44.i686
efi-srpm-macros-6-5.fc44.noarch
elfutils-0.194-2.fc44.i686
elfutils-debuginfod-client-0.194-2.fc44.i686
elfutils-default-yama-scope-0.194-2.fc44.noarch
elfutils-libelf-0.194-2.fc44.i686
elfutils-libs-0.194-2.fc44.i686
fedora-gpg-keys-44-0.1.noarch
fedora-release-44-0.10.noarch
fedora-release-common-44-0.10.noarch
fedora-release-identity-basic-44-0.10.noarch
fedora-repos-44-0.1.noarch
fedora-repos-rawhide-44-0.1.noarch
file-5.46-8.fc44.i686
file-libs-5.46-8.fc44.i686
filesystem-3.18-50.fc43.i686
filesystem-srpm-macros-3.18-50.fc43.noarch
findutils-4.10.0-6.fc43.i686
fonts-srpm-macros-5.0.0-1.fc44.noarch
forge-srpm-macros-0.4.0-3.fc43.noarch
fpc-srpm-macros-1.3-15.fc43.noarch
gap-srpm-macros-2-1.fc44.noarch
gawk-5.3.2-2.fc43.i686
gdb-minimal-16.3-6.fc44.i686
gdbm-libs-1.23-10.fc43.i686
ghc-srpm-macros-1.9.2-3.fc43.noarch
glibc-2.42.9000-17.fc44.i686
glibc-common-2.42.9000-17.fc44.i686
glibc-gconv-extra-2.42.9000-17.fc44.i686
glibc-minimal-langpack-2.42.9000-17.fc44.i686
gmp-6.3.0-4.fc44.i686
gnat-srpm-macros-6-8.fc43.noarch
gnulib-l10n-20241231-1.fc44.noarch
gnupg2-2.4.8-4.fc43.i686
gnupg2-dirmngr-2.4.8-4.fc43.i686
gnupg2-gpg-agent-2.4.8-4.fc43.i686
gnupg2-gpgconf-2.4.8-4.fc43.i686
gnupg2-keyboxd-2.4.8-4.fc43.i686
gnupg2-verify-2.4.8-4.fc43.i686
gnutls-3.8.11-6.fc44.i686
go-srpm-macros-3.8.0-1.fc44.noarch
gpgverify-2.2-3.fc43.noarch
grep-3.12-2.fc43.i686
gzip-1.14-1.fc44.i686
ima-evm-utils-libs-1.6.2-7.fc44.i686
info-7.2-7.fc44.i686
jansson-2.14-3.fc43.i686
java-srpm-macros-1-7.fc43.noarch
json-c-0.18-7.fc43.i686
kernel-srpm-macros-1.0-27.fc43.noarch
keyutils-libs-1.6.3-6.fc43.i686
krb5-libs-1.21.3-10.fc44.i686
libacl-2.3.2-4.fc44.i686
libarchive-3.8.4-1.fc44.i686
libassuan-2.5.7-4.fc43.i686
libatomic-16.0.0-0.3.fc44.i686
libattr-2.5.2-6.fc43.i686
libblkid-2.41.3-8.fc44.i686
libbrotli-1.2.0-1.fc44.i686
libcap-2.77-1.fc44.i686
libcap-ng-0.8.5-8.fc44.i686
libcom_err-1.47.3-3.fc44.i686
libcurl-8.18.0~rc2-1.fc44.i686
libeconf-0.7.9-2.fc43.i686
libevent-2.1.12-16.fc43.i686
libfdisk-2.41.3-8.fc44.i686
libffi-3.5.2-1.fc44.i686
libfsverity-1.6-3.fc43.i686
libgcc-16.0.0-0.3.fc44.i686
libgcrypt-1.11.2-1.fc44.i686
libgomp-16.0.0-0.3.fc44.i686
libgpg-error-1.58-1.fc44.i686
libidn2-2.3.8-2.fc43.i686
libksba-1.6.7-4.fc43.i686
liblastlog2-2.41.3-8.fc44.i686
libmount-2.41.3-8.fc44.i686
libnghttp2-1.68.0-2.fc44.i686
libnghttp3-1.14.0-1.fc44.i686
libpkgconf-2.3.0-3.fc43.i686
libpsl-0.21.5-6.fc43.i686
libselinux-3.9-5.fc44.i686
libselinux-utils-3.9-5.fc44.i686
libsemanage-3.9-4.fc44.i686
libsepol-3.9-2.fc43.i686
libsmartcols-2.41.3-8.fc44.i686
libssh-0.11.3-1.fc44.i686
libssh-config-0.11.3-1.fc44.noarch
libstdc++-16.0.0-0.3.fc44.i686
libtasn1-4.20.0-2.fc43.i686
libtool-ltdl-2.5.4-9.fc44.i686
libunistring-1.1-10.fc43.i686
libusb1-1.0.29-4.fc44.i686
libuuid-2.41.3-8.fc44.i686
libverto-0.3.2-11.fc43.i686
libxcrypt-4.5.2-2.fc44.i686
libxml2-2.12.10-5.fc44.i686
libzstd-1.5.7-3.fc44.i686
linkdupes-0.7.2-2.fc44.i686
lua-libs-5.4.8-4.fc44.i686
lua-srpm-macros-1-16.fc43.noarch
lz4-libs-1.10.0-3.fc43.i686
mpfr-4.2.2-2.fc43.i686
ncurses-base-6.5-8.20250614.fc44.noarch
ncurses-libs-6.5-8.20250614.fc44.i686
nettle-3.10.1-2.fc43.i686
ngtcp2-1.18.0-1.fc44.i686
ngtcp2-crypto-ossl-1.18.0-1.fc44.i686
npth-1.8-3.fc43.i686
ocaml-srpm-macros-11-2.fc43.noarch
openblas-srpm-macros-2-20.fc43.noarch
openldap-2.6.10-4.fc44.i686
openssl-libs-3.5.4-1.fc44.i686
p11-kit-0.25.8-1.fc44.i686
p11-kit-trust-0.25.8-1.fc44.i686
package-notes-srpm-macros-0.5-14.fc43.noarch
pam-libs-1.7.1-3.fc43.i686
patch-2.8-3.fc44.i686
pcre2-10.47-1.fc44.i686
pcre2-syntax-10.47-1.fc44.noarch
perl-srpm-macros-1-60.fc43.noarch
pkgconf-2.3.0-3.fc43.i686
pkgconf-m4-2.3.0-3.fc43.noarch
pkgconf-pkg-config-2.3.0-3.fc43.i686
policycoreutils-3.9-5.fc44.i686
popt-1.19-9.fc43.i686
publicsuffix-list-dafsa-20250616-2.fc43.noarch
pyproject-srpm-macros-1.18.6-1.fc44.noarch
python-srpm-macros-3.14-9.fc44.noarch
qt5-srpm-macros-5.15.18-1.fc44.noarch
qt6-srpm-macros-6.10.1-1.fc44.noarch
readline-8.3-2.fc43.i686
redhat-rpm-config-343-19.fc44.noarch
rpm-6.0.1-1.fc44.i686
rpm-build-6.0.1-1.fc44.i686
rpm-build-libs-6.0.1-1.fc44.i686
rpm-libs-6.0.1-1.fc44.i686
rpm-plugin-selinux-6.0.1-1.fc44.i686
rpm-sequoia-1.10.0-1.fc44.i686
rpm-sign-libs-6.0.1-1.fc44.i686
rust-srpm-macros-28.4-1.fc44.noarch
sed-4.9-6.fc44.i686
selinux-policy-42.19-1.fc44.noarch
selinux-policy-targeted-42.19-1.fc44.noarch
setup-2.15.0-27.fc44.noarch
shadow-utils-4.18.0-7.fc44.i686
sqlite-libs-3.51.0-1.fc44.i686
systemd-libs-259-1.fc44.i686
systemd-standalone-sysusers-259-1.fc44.i686
tar-1.35-6.fc43.i686
tpm2-tss-4.1.3-8.fc43.i686
tree-sitter-srpm-macros-0.4.2-1.fc43.noarch
unzip-6.0-68.fc44.i686
util-linux-2.41.3-8.fc44.i686
util-linux-core-2.41.3-8.fc44.i686
which-2.23-3.fc43.i686
xxhash-libs-0.8.3-3.fc43.i686
xz-5.8.1-4.fc44.i686
xz-libs-5.8.1-4.fc44.i686
zig-srpm-macros-1-5.fc43.noarch
zip-3.0-44.fc43.i686
zlib-ng-compat-2.3.2-2.fc44.i686
zstd-1.5.7-3.fc44.i686
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1762732800
Wrote: /builddir/build/SRPMS/bionetgen-2.9.0-11.fc44.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1766664604.194588/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-_fihx0m7/bionetgen/bionetgen.spec) Config(child) 0 minutes 24 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/bionetgen-2.9.0-11.fc44.src.rpm)  Config(fedora-rawhide-i686)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1766664604.194588/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1766664604.194588/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1766664604.194588/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-1.fc44.x86_64
  rpm-sequoia-1.10.0-1.fc44.x86_64
  dnf5-5.3.0.0-3.fc44.x86_64
  dnf5-plugins-5.3.0.0-3.fc44.x86_64
Finish: chroot init
Start: build phase for bionetgen-2.9.0-11.fc44.src.rpm
Start: build setup for bionetgen-2.9.0-11.fc44.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1762732800
Wrote: /builddir/build/SRPMS/bionetgen-2.9.0-11.fc44.src.rpm
Updating and loading repositories:
 Additional repo https_kojipkgs_fedorap 100% |  77.7 KiB/s |   3.5 KiB |  00m00s
 local                                  100% |  77.7 KiB/s |   3.5 KiB |  00m00s
 Copr repository                        100% |  34.0 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package                 Arch   Version                Repository                                                                        Size
Installing:
 cmake                  i686   0:3.31.10-3.fc44       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  35.4 MiB
 gcc                    i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 123.4 MiB
 gcc-c++                i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  49.0 MiB
 gcc-gfortran           i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  46.8 MiB
 make                   i686   1:4.4.1-11.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.8 MiB
 perl-Carp              noarch 0:1.54-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  46.6 KiB
 perl-Class-Struct      noarch 0:0.68-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  25.4 KiB
 perl-Data-Dumper       i686   0:2.191-521.fc43       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 110.9 KiB
 perl-Exporter          noarch 0:5.79-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  54.3 KiB
 perl-File-Basename     noarch 0:2.86-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  14.0 KiB
 perl-FindBin           noarch 0:1.54-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   6.8 KiB
 perl-Getopt-Long       noarch 1:2.58-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 144.5 KiB
 perl-IO                i686   0:1.55-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 142.7 KiB
 perl-IPC-Open3         noarch 0:1.24-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  27.7 KiB
 perl-Math-Complex      noarch 0:1.63-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  85.1 KiB
 perl-POSIX             i686   0:2.23-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 230.7 KiB
 perl-PathTools         i686   0:3.94-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 175.2 KiB
 perl-Scalar-List-Utils i686   5:1.70-1.fc43          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 148.3 KiB
 perl-Symbol            noarch 0:1.09-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   6.8 KiB
 perl-constant          noarch 0:1.33-521.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  26.2 KiB
 perl-generators        noarch 0:1.16-8.fc43          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  21.8 KiB
 perl-interpreter       i686   4:5.42.0-520.fc43      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 117.8 KiB
 perl-lib               i686   0:0.65-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   8.5 KiB
 perl-libs              i686   4:5.42.0-520.fc43      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  11.8 MiB
 perl-vars              noarch 0:1.05-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.9 KiB
Installing dependencies:
 annobin-docs           noarch 0:13.04-3.fc44         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  99.2 KiB
 annobin-plugin-gcc     i686   0:13.04-3.fc44         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 698.6 KiB
 cmake-data             noarch 0:3.31.10-3.fc44       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   8.4 MiB
 cmake-filesystem       i686   0:3.31.10-3.fc44       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   0.0   B
 cmake-rpm-macros       noarch 0:3.31.10-3.fc44       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   8.2 KiB
 cpp                    i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  44.3 MiB
 emacs-filesystem       i686   1:30.2-1.fc44          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   0.0   B
 expat                  i686   0:2.7.3-1.fc44         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 303.6 KiB
 gcc-plugin-annobin     i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  59.9 KiB
 glibc-devel            i686   0:2.42.9000-17.fc44    local                                                                          2.3 MiB
 groff-base             i686   0:1.23.0-11.fc44       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.8 MiB
 jsoncpp                i686   0:1.9.6-2.fc43         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 256.9 KiB
 kernel-headers         i686   0:6.19.0-0.rc2.20.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   6.9 MiB
 libasan                i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 MiB
 libgfortran            i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.4 MiB
 libmpc                 i686   0:1.3.1-8.fc43         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 163.9 KiB
 libquadmath            i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 513.2 KiB
 libquadmath-devel      i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  22.1 KiB
 libstdc++-devel        i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  29.8 MiB
 libubsan               i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 563.1 KiB
 libuv                  i686   1:1.51.0-2.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 573.6 KiB
 libxcrypt-devel        i686   0:4.5.2-2.fc44         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  31.0 KiB
 mpdecimal              i686   0:4.0.1-2.fc43         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 216.3 KiB
 ncurses                i686   0:6.5-8.20250614.fc44  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 603.7 KiB
 perl-AutoLoader        noarch 0:5.74-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  20.6 KiB
 perl-B                 i686   0:1.89-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 504.6 KiB
 perl-Digest            noarch 0:1.20-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  35.3 KiB
 perl-Digest-MD5        i686   0:2.59-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  59.0 KiB
 perl-DynaLoader        i686   0:1.57-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  32.1 KiB
 perl-Encode            i686   4:3.21-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.2 MiB
 perl-Errno             i686   0:1.38-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   8.4 KiB
 perl-Fcntl             i686   0:1.20-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  40.1 KiB
 perl-Fedora-VSP        noarch 0:0.001-37.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  39.7 KiB
 perl-File-Path         noarch 0:2.18-521.fc44        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  63.5 KiB
 perl-File-Temp         noarch 1:0.231.200-1.fc44     https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 163.7 KiB
 perl-File-stat         noarch 0:1.14-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  12.5 KiB
 perl-FileHandle        noarch 0:2.05-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   9.4 KiB
 perl-Getopt-Std        noarch 0:1.14-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  11.2 KiB
 perl-HTTP-Tiny         noarch 0:0.090-521.fc43       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 154.4 KiB
 perl-IO-Socket-IP      noarch 0:0.43-521.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 100.3 KiB
 perl-IO-Socket-SSL     noarch 0:2.095-2.fc43         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 714.5 KiB
 perl-MIME-Base32       noarch 0:1.303-24.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  30.7 KiB
 perl-MIME-Base64       i686   0:3.16-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  41.3 KiB
 perl-Net-SSLeay        i686   0:1.94-11.fc43         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.4 MiB
 perl-Pod-Escapes       noarch 1:1.07-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  24.9 KiB
 perl-Pod-Perldoc       noarch 0:3.28.01-521.fc43     https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 163.7 KiB
 perl-Pod-Simple        noarch 1:3.47-3.fc43          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 565.3 KiB
 perl-Pod-Usage         noarch 4:2.05-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  86.3 KiB
 perl-SelectSaver       noarch 0:1.02-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.2 KiB
 perl-Socket            i686   4:2.040-2.fc43         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 111.5 KiB
 perl-Storable          i686   1:3.37-521.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 226.4 KiB
 perl-Term-ANSIColor    noarch 0:5.01-521.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  97.5 KiB
 perl-Term-Cap          noarch 0:1.18-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  29.3 KiB
 perl-Text-ParseWords   noarch 0:3.31-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  13.6 KiB
 perl-Text-Tabs+Wrap    noarch 0:2024.001-520.fc43    https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  22.6 KiB
 perl-Time-Local        noarch 2:1.350-520.fc43       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  69.0 KiB
 perl-URI               noarch 0:5.34-2.fc44          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 268.0 KiB
 perl-base              noarch 0:2.27-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  12.6 KiB
 perl-if                noarch 0:0.61.000-520.fc43    https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   5.8 KiB
 perl-libnet            noarch 0:3.15-521.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 289.4 KiB
 perl-locale            noarch 0:1.13-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   6.1 KiB
 perl-macros            noarch 4:5.42.0-520.fc43      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   5.5 KiB
 perl-mro               i686   0:1.29-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  36.8 KiB
 perl-overload          noarch 0:1.40-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  71.6 KiB
 perl-overloading       noarch 0:0.02-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   4.9 KiB
 perl-parent            noarch 1:0.244-520.fc43       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  10.3 KiB
 perl-podlators         noarch 1:6.0.2-520.fc43       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 317.5 KiB
 python-pip-wheel       noarch 0:25.3-1.fc44          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.2 MiB
 python3                i686   0:3.14.2-1.fc44        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  28.0 KiB
 python3-libs           i686   0:3.14.2-1.fc44        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  42.7 MiB
 rhash                  i686   0:1.4.5-3.fc43         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 394.5 KiB
 tzdata                 noarch 0:2025c-1.fc44         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.2 MiB
 vim-filesystem         noarch 2:9.1.1972-1.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  40.0   B

Transaction Summary:
 Installing:        98 packages

Total size of inbound packages is 138 MiB. Need to download 138 MiB.
After this operation, 429 MiB extra will be used (install 429 MiB, remove 0 B).
[ 1/98] cmake-0:3.31.10-3.fc44.i686     100% |  51.0 MiB/s |  13.5 MiB |  00m00s
[ 2/98] gcc-c++-0:16.0.0-0.3.fc44.i686  100% |  56.9 MiB/s |  17.4 MiB |  00m00s
[ 3/98] make-1:4.4.1-11.fc43.i686       100% |  30.0 MiB/s | 584.4 KiB |  00m00s
[ 4/98] perl-Carp-0:1.54-520.fc43.noarc 100% |   2.0 MiB/s |  28.7 KiB |  00m00s
[ 5/98] gcc-gfortran-0:16.0.0-0.3.fc44. 100% | 167.3 MiB/s |  16.2 MiB |  00m00s
[ 6/98] perl-Class-Struct-0:0.68-520.fc 100% |   1.0 MiB/s |  22.1 KiB |  00m00s
[ 7/98] perl-PathTools-0:3.94-520.fc43. 100% |   5.4 MiB/s |  83.4 KiB |  00m00s
[ 8/98] perl-libs-4:5.42.0-520.fc43.i68 100% |  98.7 MiB/s |   2.6 MiB |  00m00s
[ 9/98] perl-Data-Dumper-0:2.191-521.fc 100% |   3.5 MiB/s |  56.9 KiB |  00m00s
[10/98] perl-Exporter-0:5.79-520.fc43.n 100% |   2.0 MiB/s |  30.9 KiB |  00m00s
[11/98] perl-File-Basename-0:2.86-520.f 100% |   1.1 MiB/s |  17.2 KiB |  00m00s
[12/98] perl-FindBin-0:1.54-520.fc43.no 100% | 948.7 KiB/s |  14.2 KiB |  00m00s
[13/98] perl-Getopt-Long-1:2.58-520.fc4 100% |   4.8 MiB/s |  63.6 KiB |  00m00s
[14/98] perl-IO-0:1.55-520.fc43.i686    100% |   5.5 MiB/s |  78.8 KiB |  00m00s
[15/98] perl-IPC-Open3-0:1.24-520.fc43. 100% |   1.8 MiB/s |  23.9 KiB |  00m00s
[16/98] perl-Scalar-List-Utils-5:1.70-1 100% |   5.0 MiB/s |  77.3 KiB |  00m00s
[17/98] perl-Math-Complex-0:1.63-520.fc 100% |   3.2 MiB/s |  46.2 KiB |  00m00s
[18/98] perl-POSIX-0:2.23-520.fc43.i686 100% |   6.6 MiB/s | 100.8 KiB |  00m00s
[19/98] perl-Symbol-0:1.09-520.fc43.noa 100% |   1.0 MiB/s |  14.2 KiB |  00m00s
[20/98] perl-constant-0:1.33-521.fc43.n 100% |   1.7 MiB/s |  22.8 KiB |  00m00s
[21/98] perl-lib-0:0.65-520.fc43.i686   100% |   1.0 MiB/s |  14.9 KiB |  00m00s
[22/98] perl-vars-0:1.05-520.fc43.noarc 100% |   1.0 MiB/s |  13.0 KiB |  00m00s
[23/98] perl-generators-0:1.16-8.fc43.n 100% |   1.1 MiB/s |  16.2 KiB |  00m00s
[24/98] perl-interpreter-4:5.42.0-520.f 100% |   4.7 MiB/s |  72.3 KiB |  00m00s
[25/98] perl-DynaLoader-0:1.57-520.fc43 100% |   1.8 MiB/s |  26.0 KiB |  00m00s
[26/98] perl-Fedora-VSP-0:0.001-37.fc43 100% |   1.5 MiB/s |  22.8 KiB |  00m00s
[27/98] perl-Encode-4:3.21-520.fc43.i68 100% |  54.6 MiB/s |   1.0 MiB |  00m00s
[28/98] perl-macros-4:5.42.0-520.fc43.n 100% | 819.7 KiB/s |  12.3 KiB |  00m00s
[29/98] perl-Errno-0:1.38-520.fc43.i686 100% |   1.0 MiB/s |  14.9 KiB |  00m00s
[30/98] perl-locale-0:1.13-520.fc43.noa 100% |   1.0 MiB/s |  13.5 KiB |  00m00s
[31/98] perl-Fcntl-0:1.20-520.fc43.i686 100% |   2.1 MiB/s |  29.8 KiB |  00m00s
[32/98] perl-overload-0:1.40-520.fc43.n 100% |   3.4 MiB/s |  45.6 KiB |  00m00s
[33/98] perl-File-stat-0:1.14-520.fc43. 100% |   1.3 MiB/s |  17.1 KiB |  00m00s
[34/98] perl-SelectSaver-0:1.02-520.fc4 100% | 837.3 KiB/s |  11.7 KiB |  00m00s
[35/98] perl-Socket-4:2.040-2.fc43.i686 100% |   3.6 MiB/s |  55.8 KiB |  00m00s
[36/98] perl-Pod-Usage-4:2.05-520.fc43. 100% |   3.0 MiB/s |  40.5 KiB |  00m00s
[37/98] perl-Text-ParseWords-0:3.31-520 100% |   1.2 MiB/s |  16.3 KiB |  00m00s
[38/98] perl-base-0:2.27-520.fc43.noarc 100% |   1.2 MiB/s |  16.2 KiB |  00m00s
[39/98] perl-Getopt-Std-0:1.14-520.fc43 100% |   1.1 MiB/s |  15.7 KiB |  00m00s
[40/98] perl-MIME-Base64-0:3.16-520.fc4 100% |   2.1 MiB/s |  29.9 KiB |  00m00s
[41/98] perl-Storable-1:3.37-521.fc43.i 100% |   6.6 MiB/s | 101.0 KiB |  00m00s
[42/98] perl-parent-1:0.244-520.fc43.no 100% |   1.1 MiB/s |  14.8 KiB |  00m00s
[43/98] perl-B-0:1.89-520.fc43.i686     100% |  11.8 MiB/s | 181.3 KiB |  00m00s
[44/98] perl-if-0:0.61.000-520.fc43.noa 100% |   1.1 MiB/s |  14.0 KiB |  00m00s
[45/98] perl-overloading-0:0.02-520.fc4 100% | 993.0 KiB/s |  12.9 KiB |  00m00s
[46/98] libgfortran-0:16.0.0-0.3.fc44.i 100% |  45.1 MiB/s | 876.7 KiB |  00m00s
[47/98] libmpc-0:1.3.1-8.fc43.i686      100% |   5.0 MiB/s |  76.5 KiB |  00m00s
[48/98] libquadmath-devel-0:16.0.0-0.3. 100% |   1.2 MiB/s |  22.1 KiB |  00m00s
[49/98] libquadmath-0:16.0.0-0.3.fc44.i 100% |  11.9 MiB/s | 231.0 KiB |  00m00s
[50/98] libstdc++-devel-0:16.0.0-0.3.fc 100% | 126.4 MiB/s |   5.4 MiB |  00m00s
[51/98] glibc-devel-0:2.42.9000-17.fc44 100% |  28.7 MiB/s | 528.4 KiB |  00m00s
[52/98] cpp-0:16.0.0-0.3.fc44.i686      100% | 161.3 MiB/s |  14.7 MiB |  00m00s
[53/98] libasan-0:16.0.0-0.3.fc44.i686  100% |  18.2 MiB/s | 559.8 KiB |  00m00s
[54/98] libubsan-0:16.0.0-0.3.fc44.i686 100% |  13.9 MiB/s | 241.4 KiB |  00m00s
[55/98] cmake-data-0:3.31.10-3.fc44.noa 100% |  82.2 MiB/s |   1.9 MiB |  00m00s
[56/98] cmake-filesystem-0:3.31.10-3.fc 100% | 986.5 KiB/s |  13.8 KiB |  00m00s
[57/98] expat-0:2.7.3-1.fc44.i686       100% |   7.1 MiB/s | 124.0 KiB |  00m00s
[58/98] jsoncpp-0:1.9.6-2.fc43.i686     100% |   6.8 MiB/s | 111.3 KiB |  00m00s
[59/98] libuv-1:1.51.0-2.fc43.i686      100% |  16.6 MiB/s | 272.3 KiB |  00m00s
[60/98] rhash-0:1.4.5-3.fc43.i686       100% |  11.6 MiB/s | 214.4 KiB |  00m00s
[61/98] kernel-headers-0:6.19.0-0.rc2.2 100% |  74.8 MiB/s |   1.6 MiB |  00m00s
[62/98] libxcrypt-devel-0:4.5.2-2.fc44. 100% |   1.8 MiB/s |  30.0 KiB |  00m00s
[63/98] perl-mro-0:1.29-520.fc43.i686   100% |   2.1 MiB/s |  30.1 KiB |  00m00s
[64/98] perl-Pod-Perldoc-0:3.28.01-521. 100% |   5.5 MiB/s |  78.7 KiB |  00m00s
[65/98] perl-podlators-1:6.0.2-520.fc43 100% |   8.7 MiB/s | 124.3 KiB |  00m00s
[66/98] groff-base-0:1.23.0-11.fc44.i68 100% |  57.6 MiB/s |   1.1 MiB |  00m00s
[67/98] perl-File-Temp-1:0.231.200-1.fc 100% |   4.5 MiB/s |  59.5 KiB |  00m00s
[68/98] perl-HTTP-Tiny-0:0.090-521.fc43 100% |   4.2 MiB/s |  56.3 KiB |  00m00s
[69/98] perl-Pod-Simple-1:3.47-3.fc43.n 100% |  14.7 MiB/s | 210.5 KiB |  00m00s
[70/98] perl-IO-Socket-SSL-0:2.095-2.fc 100% |  16.1 MiB/s | 231.5 KiB |  00m00s
[71/98] perl-Net-SSLeay-0:1.94-11.fc43. 100% |  23.0 MiB/s | 376.1 KiB |  00m00s
[72/98] perl-Time-Local-2:1.350-520.fc4 100% |   2.8 MiB/s |  34.4 KiB |  00m00s
[73/98] perl-File-Path-0:2.18-521.fc44. 100% |   2.1 MiB/s |  35.0 KiB |  00m00s
[74/98] emacs-filesystem-1:30.2-1.fc44. 100% | 560.8 KiB/s |   7.9 KiB |  00m00s
[75/98] perl-Term-ANSIColor-0:5.01-521. 100% |   3.6 MiB/s |  47.6 KiB |  00m00s
[76/98] vim-filesystem-2:9.1.1972-1.fc4 100% |   1.0 MiB/s |  15.4 KiB |  00m00s
[77/98] perl-Term-Cap-0:1.18-520.fc43.n 100% |   1.6 MiB/s |  21.9 KiB |  00m00s
[78/98] ncurses-0:6.5-8.20250614.fc44.i 100% |  24.3 MiB/s | 423.8 KiB |  00m00s
[79/98] perl-Pod-Escapes-1:1.07-520.fc4 100% |   1.5 MiB/s |  19.8 KiB |  00m00s
[80/98] perl-Text-Tabs+Wrap-0:2024.001- 100% |   1.5 MiB/s |  21.6 KiB |  00m00s
[81/98] perl-AutoLoader-0:5.74-520.fc43 100% |   1.6 MiB/s |  21.2 KiB |  00m00s
[82/98] perl-IO-Socket-IP-0:0.43-521.fc 100% |   3.2 MiB/s |  42.1 KiB |  00m00s
[83/98] perl-URI-0:5.34-2.fc44.noarch   100% |   9.4 MiB/s | 134.5 KiB |  00m00s
[84/98] gcc-0:16.0.0-0.3.fc44.i686      100% |  40.6 MiB/s |  43.3 MiB |  00m01s
[85/98] perl-MIME-Base32-0:1.303-24.fc4 100% | 433.0 KiB/s |  20.4 KiB |  00m00s
[86/98] perl-libnet-0:3.15-521.fc43.noa 100% |   3.1 MiB/s | 122.8 KiB |  00m00s
[87/98] perl-Digest-0:1.20-520.fc43.noa 100% |   1.9 MiB/s |  24.8 KiB |  00m00s
[88/98] perl-FileHandle-0:2.05-520.fc43 100% |   1.1 MiB/s |  15.5 KiB |  00m00s
[89/98] perl-Digest-MD5-0:2.59-520.fc43 100% |   2.3 MiB/s |  36.0 KiB |  00m00s
[90/98] gcc-plugin-annobin-0:16.0.0-0.3 100% |   2.4 MiB/s |  34.1 KiB |  00m00s
[91/98] cmake-rpm-macros-0:3.31.10-3.fc 100% | 973.7 KiB/s |  13.6 KiB |  00m00s
[92/98] annobin-plugin-gcc-0:13.04-3.fc 100% |  37.1 MiB/s | 683.7 KiB |  00m00s
[93/98] annobin-docs-0:13.04-3.fc44.noa 100% |   5.8 MiB/s |  89.2 KiB |  00m00s
[94/98] python3-0:3.14.2-1.fc44.i686    100% |   1.8 MiB/s |  27.8 KiB |  00m00s
[95/98] mpdecimal-0:4.0.1-2.fc43.i686   100% |   4.4 MiB/s |  99.1 KiB |  00m00s
[96/98] python-pip-wheel-0:25.3-1.fc44. 100% |  41.9 MiB/s |   1.1 MiB |  00m00s
[97/98] tzdata-0:2025c-1.fc44.noarch    100% |  28.0 MiB/s | 429.7 KiB |  00m00s
[98/98] python3-libs-0:3.14.2-1.fc44.i6 100% | 160.4 MiB/s |   9.6 MiB |  00m00s
--------------------------------------------------------------------------------
[98/98] Total                           100% | 118.9 MiB/s | 138.2 MiB |  00m01s
Running transaction
[  1/100] Verify package files          100% | 217.0   B/s |  98.0   B |  00m00s
[  2/100] Prepare transaction           100% |   1.7 KiB/s |  98.0   B |  00m00s
[  3/100] Installing libmpc-0:1.3.1-8.f 100% | 161.5 MiB/s | 165.4 KiB |  00m00s
[  4/100] Installing cmake-filesystem-0 100% |   7.4 MiB/s |   7.6 KiB |  00m00s
[  5/100] Installing expat-0:2.7.3-1.fc 100% |  24.9 MiB/s | 305.7 KiB |  00m00s
[  6/100] Installing libquadmath-0:16.0 100% | 502.4 MiB/s | 514.5 KiB |  00m00s
[  7/100] Installing make-1:4.4.1-11.fc 100% | 106.6 MiB/s |   1.8 MiB |  00m00s
[  8/100] Installing tzdata-0:2025c-1.f 100% |  54.0 MiB/s |   1.5 MiB |  00m00s
[  9/100] Installing python-pip-wheel-0 100% | 602.0 MiB/s |   1.2 MiB |  00m00s
[ 10/100] Installing annobin-docs-0:13. 100% |   0.0   B/s | 100.3 KiB |  00m00s
[ 11/100] Installing vim-filesystem-2:9 100% |   0.0   B/s |   4.7 KiB |  00m00s
[ 12/100] Installing emacs-filesystem-1 100% | 789.1 KiB/s | 808.0   B |  00m00s
[ 13/100] Installing kernel-headers-0:6 100% | 226.7 MiB/s |   7.0 MiB |  00m00s
[ 14/100] Installing glibc-devel-0:2.42 100% | 198.1 MiB/s |   2.4 MiB |  00m00s
[ 15/100] Installing libxcrypt-devel-0: 100% |  32.5 MiB/s |  33.3 KiB |  00m00s
[ 16/100] Installing libstdc++-devel-0: 100% | 453.6 MiB/s |  29.9 MiB |  00m00s
[ 17/100] Installing cpp-0:16.0.0-0.3.f 100% | 402.5 MiB/s |  44.3 MiB |  00m00s
[ 18/100] Installing mpdecimal-0:4.0.1- 100% |  70.9 MiB/s | 217.9 KiB |  00m00s
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[ 20/100] Installing python3-0:3.14.2-1 100% |   2.6 MiB/s |  29.7 KiB |  00m00s
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Warning: skipped OpenPGP checks for 98 packages from repositories: https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch, local
Complete!
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1762732800
Wrote: /builddir/build/SRPMS/bionetgen-2.9.0-11.fc44.src.rpm
Updating and loading repositories:
 Additional repo https_kojipkgs_fedorap 100% |   8.0 KiB/s |   3.5 KiB |  00m00s
 local                                  100% |   8.0 KiB/s |   3.5 KiB |  00m00s
 Copr repository                        100% |   3.5 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Nothing to do.
Package "cmake-3.31.10-3.fc44.i686" is already installed.
Package "gcc-16.0.0-0.3.fc44.i686" is already installed.
Package "gcc-c++-16.0.0-0.3.fc44.i686" is already installed.
Package "gcc-gfortran-16.0.0-0.3.fc44.i686" is already installed.
Package "make-1:4.4.1-11.fc43.i686" is already installed.
Package "perl-Carp-1.54-520.fc43.noarch" is already installed.
Package "perl-Class-Struct-0.68-520.fc43.noarch" is already installed.
Package "perl-libs-4:5.42.0-520.fc43.i686" is already installed.
Package "perl-PathTools-3.94-520.fc43.i686" is already installed.
Package "perl-Data-Dumper-2.191-521.fc43.i686" is already installed.
Package "perl-Exporter-5.79-520.fc43.noarch" is already installed.
Package "perl-File-Basename-2.86-520.fc43.noarch" is already installed.
Package "perl-PathTools-3.94-520.fc43.i686" is already installed.
Package "perl-PathTools-3.94-520.fc43.i686" is already installed.
Package "perl-FindBin-1.54-520.fc43.noarch" is already installed.
Package "perl-Getopt-Long-1:2.58-520.fc43.noarch" is already installed.
Package "perl-IO-1.55-520.fc43.i686" is already installed.
Package "perl-IO-1.55-520.fc43.i686" is already installed.
Package "perl-IPC-Open3-1.24-520.fc43.noarch" is already installed.
Package "perl-Scalar-List-Utils-5:1.70-1.fc43.i686" is already installed.
Package "perl-Math-Complex-1.63-520.fc43.noarch" is already installed.
Package "perl-POSIX-2.23-520.fc43.i686" is already installed.
Package "perl-Scalar-List-Utils-5:1.70-1.fc43.i686" is already installed.
Package "perl-Symbol-1.09-520.fc43.noarch" is already installed.
Package "perl-constant-1.33-521.fc43.noarch" is already installed.
Package "perl-lib-0.65-520.fc43.i686" is already installed.
Package "perl-libs-4:5.42.0-520.fc43.i686" is already installed.
Package "perl-vars-1.05-520.fc43.noarch" is already installed.
Package "perl-libs-4:5.42.0-520.fc43.i686" is already installed.
Package "perl-generators-1.16-8.fc43.noarch" is already installed.
Package "perl-interpreter-4:5.42.0-520.fc43.i686" is already installed.

Finish: build setup for bionetgen-2.9.0-11.fc44.src.rpm
Start: rpmbuild bionetgen-2.9.0-11.fc44.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1762732800
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.Wd5Aj3
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.wINz6V
+ umask 022
+ cd /builddir/build/BUILD/bionetgen-2.9.0-build
+ cd /builddir/build/BUILD/bionetgen-2.9.0-build
+ rm -rf bionetgen-2.9.0
+ /usr/bin/mkdir -p bionetgen-2.9.0
+ cd bionetgen-2.9.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bionetgen-BioNetGen-2.9.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ pushd bionetgen-BioNetGen-2.9.0
~/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0 ~/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0
+ rm -f bng2/libsource/gsl-1.9.tar.gz bng2/libsource/Mathutils.tar.gz bng2/libsource/muparser_v2_2_4.zip
+ tar -xvf bng2/libsource/cvode-2.6.0.tar.gz -C bng2/Network3
cvode-2.6.0/README
cvode-2.6.0/INSTALL_NOTES
cvode-2.6.0/LICENSE
cvode-2.6.0/Makefile.in
cvode-2.6.0/configure.ac
cvode-2.6.0/acinclude.m4
cvode-2.6.0/config.hin
cvode-2.6.0/configure
cvode-2.6.0/CMakeLists.txt
cvode-2.6.0/config/config.guess
cvode-2.6.0/config/config.sub
cvode-2.6.0/config/install-sh
cvode-2.6.0/config/mkinstalldirs
cvode-2.6.0/config/rminstalldirs
cvode-2.6.0/config/ltmain.sh
cvode-2.6.0/config/mod_c.m4
cvode-2.6.0/config/mod_fortran.m4
cvode-2.6.0/config/cust_general.m4
cvode-2.6.0/config/CheckFortranFunctionExists.cmake
cvode-2.6.0/config/SundialsFortran.cmake
cvode-2.6.0/config/SundialsLapack.cmake
cvode-2.6.0/config/SundialsMPIC.cmake
cvode-2.6.0/config/SundialsMPIF.cmake
cvode-2.6.0/config/FindLAPACK.cmake
cvode-2.6.0/config/FindBLAS.cmake
cvode-2.6.0/config/FindMPI.cmake
cvode-2.6.0/bin/sundials-config.in
cvode-2.6.0/bin/fortran-update.in
cvode-2.6.0/bin/makefile-update.in
cvode-2.6.0/include/sundials/sundials_config.in
cvode-2.6.0/include/sundials/sundials_types.h
cvode-2.6.0/include/sundials/sundials_math.h
cvode-2.6.0/include/sundials/sundials_nvector.h
cvode-2.6.0/include/sundials/sundials_fnvector.h
cvode-2.6.0/include/sundials/sundials_dense.h
cvode-2.6.0/include/sundials/sundials_direct.h
cvode-2.6.0/include/sundials/sundials_band.h
cvode-2.6.0/include/sundials/sundials_lapack.h
cvode-2.6.0/include/sundials/sundials_spgmr.h
cvode-2.6.0/include/sundials/sundials_spbcgs.h
cvode-2.6.0/include/sundials/sundials_sptfqmr.h
cvode-2.6.0/include/sundials/sundials_iterative.h
cvode-2.6.0/include/nvector/nvector_serial.h
cvode-2.6.0/include/nvector/nvector_parallel.h
cvode-2.6.0/src/sundials/README
cvode-2.6.0/src/sundials/Makefile.in
cvode-2.6.0/src/sundials/CMakeLists.txt
cvode-2.6.0/src/sundials/sundials_math.c
cvode-2.6.0/src/sundials/sundials_nvector.c
cvode-2.6.0/src/sundials/sundials_dense.c
cvode-2.6.0/src/sundials/sundials_direct.c
cvode-2.6.0/src/sundials/sundials_band.c
cvode-2.6.0/src/sundials/sundials_spgmr.c
cvode-2.6.0/src/sundials/sundials_spbcgs.c
cvode-2.6.0/src/sundials/sundials_sptfqmr.c
cvode-2.6.0/src/sundials/sundials_iterative.c
cvode-2.6.0/src/nvec_ser/README
cvode-2.6.0/src/nvec_ser/Makefile.in
cvode-2.6.0/src/nvec_ser/CMakeLists.txt
cvode-2.6.0/src/nvec_ser/fnvector_serial.h
cvode-2.6.0/src/nvec_ser/nvector_serial.c
cvode-2.6.0/src/nvec_ser/fnvector_serial.c
cvode-2.6.0/src/nvec_par/README
cvode-2.6.0/src/nvec_par/Makefile.in
cvode-2.6.0/src/nvec_par/CMakeLists.txt
cvode-2.6.0/src/nvec_par/fnvector_parallel.h
cvode-2.6.0/src/nvec_par/nvector_parallel.c
cvode-2.6.0/src/nvec_par/fnvector_parallel.c
cvode-2.6.0/examples/templates/cmakelists_parallel_C_ex.in
cvode-2.6.0/examples/templates/cmakelists_parallel_F77_ex.in
cvode-2.6.0/examples/templates/cmakelists_serial_C_ex.in
cvode-2.6.0/examples/templates/cmakelists_serial_F77_ex.in
cvode-2.6.0/examples/templates/makefile_parallel_C_ex.in
cvode-2.6.0/examples/templates/makefile_parallel_F77_ex.in
cvode-2.6.0/examples/templates/makefile_serial_C_ex.in
cvode-2.6.0/examples/templates/makefile_serial_F77_ex.in
cvode-2.6.0/doc/cvode/cv_guide.pdf
cvode-2.6.0/doc/cvode/cv_examples.pdf
cvode-2.6.0/include/cvode/cvode.h
cvode-2.6.0/include/cvode/cvode_direct.h
cvode-2.6.0/include/cvode/cvode_dense.h
cvode-2.6.0/include/cvode/cvode_band.h
cvode-2.6.0/include/cvode/cvode_lapack.h
cvode-2.6.0/include/cvode/cvode_diag.h
cvode-2.6.0/include/cvode/cvode_spgmr.h
cvode-2.6.0/include/cvode/cvode_spbcgs.h
cvode-2.6.0/include/cvode/cvode_sptfqmr.h
cvode-2.6.0/include/cvode/cvode_spils.h
cvode-2.6.0/include/cvode/cvode_bandpre.h
cvode-2.6.0/include/cvode/cvode_bbdpre.h
cvode-2.6.0/src/cvode/LICENSE
cvode-2.6.0/src/cvode/README
cvode-2.6.0/src/cvode/Makefile.in
cvode-2.6.0/src/cvode/CMakeLists.txt
cvode-2.6.0/src/cvode/cvode.c
cvode-2.6.0/src/cvode/cvode_io.c
cvode-2.6.0/src/cvode/cvode_direct.c
cvode-2.6.0/src/cvode/cvode_dense.c
cvode-2.6.0/src/cvode/cvode_band.c
cvode-2.6.0/src/cvode/cvode_lapack.c
cvode-2.6.0/src/cvode/cvode_diag.c
cvode-2.6.0/src/cvode/cvode_spils.c
cvode-2.6.0/src/cvode/cvode_spgmr.c
cvode-2.6.0/src/cvode/cvode_spbcgs.c
cvode-2.6.0/src/cvode/cvode_sptfqmr.c
cvode-2.6.0/src/cvode/cvode_bandpre.c
cvode-2.6.0/src/cvode/cvode_bbdpre.c
cvode-2.6.0/src/cvode/cvode_impl.h
cvode-2.6.0/src/cvode/cvode_direct_impl.h
cvode-2.6.0/src/cvode/cvode_diag_impl.h
cvode-2.6.0/src/cvode/cvode_spils_impl.h
cvode-2.6.0/src/cvode/cvode_bandpre_impl.h
cvode-2.6.0/src/cvode/cvode_bbdpre_impl.h
cvode-2.6.0/src/cvode/fcmix/Makefile.in
cvode-2.6.0/src/cvode/fcmix/CMakeLists.txt
cvode-2.6.0/src/cvode/fcmix/fcvode.c
cvode-2.6.0/src/cvode/fcmix/fcvewt.c
cvode-2.6.0/src/cvode/fcmix/fcvpreco.c
cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c
cvode-2.6.0/src/cvode/fcmix/fcvband.c
cvode-2.6.0/src/cvode/fcmix/fcvdense.c
cvode-2.6.0/src/cvode/fcmix/fcvlapack.c
cvode-2.6.0/src/cvode/fcmix/fcvlapband.c
cvode-2.6.0/src/cvode/fcmix/fcvlapdense.c
cvode-2.6.0/src/cvode/fcmix/fcvbp.c
cvode-2.6.0/src/cvode/fcmix/fcvbbd.c
cvode-2.6.0/src/cvode/fcmix/fcvroot.c
cvode-2.6.0/src/cvode/fcmix/fcvode.h
cvode-2.6.0/src/cvode/fcmix/fcvbp.h
cvode-2.6.0/src/cvode/fcmix/fcvbbd.h
cvode-2.6.0/src/cvode/fcmix/fcvroot.h
cvode-2.6.0/examples/cvode/serial/README
cvode-2.6.0/examples/cvode/serial/Makefile.in
cvode-2.6.0/examples/cvode/serial/CMakeLists.txt
cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.c
cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.c
cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.out
cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.out
cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.c
cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.out
cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.c
cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.out
cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.c
cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.out
cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.c
cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.out
cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.c
cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.out
cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.c
cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.c
cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.out
cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.out
cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.c
cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.out
cvode-2.6.0/examples/cvode/fcmix_serial/README
cvode-2.6.0/examples/cvode/fcmix_serial/Makefile.in
cvode-2.6.0/examples/cvode/fcmix_serial/CMakeLists.txt
cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.out
cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.out
cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.out
cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.out
cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.out
cvode-2.6.0/examples/cvode/parallel/README
cvode-2.6.0/examples/cvode/parallel/Makefile.in
cvode-2.6.0/examples/cvode/parallel/CMakeLists.txt
cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.c
cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.out
cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.c
cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.out
cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.c
cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.out
cvode-2.6.0/examples/cvode/fcmix_parallel/README
cvode-2.6.0/examples/cvode/fcmix_parallel/Makefile.in
cvode-2.6.0/examples/cvode/fcmix_parallel/CMakeLists.txt
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.f
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.out
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.f
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.out
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.f
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.out
+ tar -xvf bng2/libsource/muparser_v2_2_4.tar.gz -C bng2/Network3
muparser_v2_2_4/._Changes.txt
muparser_v2_2_4/Changes.txt
muparser_v2_2_4/._Install.txt
muparser_v2_2_4/Install.txt
muparser_v2_2_4/._License.txt
muparser_v2_2_4/License.txt
muparser_v2_2_4/._Makefile.in
muparser_v2_2_4/Makefile.in
muparser_v2_2_4/._build
muparser_v2_2_4/build/
muparser_v2_2_4/build/._autoconf
muparser_v2_2_4/build/autoconf/
muparser_v2_2_4/build/._bakefiles
muparser_v2_2_4/build/bakefiles/
muparser_v2_2_4/build/._makefile.mingw
muparser_v2_2_4/build/makefile.mingw
muparser_v2_2_4/build/._makefile.vc
muparser_v2_2_4/build/makefile.vc
muparser_v2_2_4/build/._msvc2013
muparser_v2_2_4/build/msvc2013/
muparser_v2_2_4/build/._obj
muparser_v2_2_4/build/obj/
muparser_v2_2_4/build/msvc2013/._muparser.sln
muparser_v2_2_4/build/msvc2013/muparser.sln
muparser_v2_2_4/build/msvc2013/._muparser_example1.vcxproj
muparser_v2_2_4/build/msvc2013/muparser_example1.vcxproj
muparser_v2_2_4/build/msvc2013/._muparser_example1.vcxproj.filters
muparser_v2_2_4/build/msvc2013/muparser_example1.vcxproj.filters
muparser_v2_2_4/build/msvc2013/._muparser_example2.vcxproj
muparser_v2_2_4/build/msvc2013/muparser_example2.vcxproj
muparser_v2_2_4/build/msvc2013/._muparser_example2.vcxproj.filters
muparser_v2_2_4/build/msvc2013/muparser_example2.vcxproj.filters
muparser_v2_2_4/build/msvc2013/._muparser_muParser.vcxproj
muparser_v2_2_4/build/msvc2013/muparser_muParser.vcxproj
muparser_v2_2_4/build/msvc2013/._muparser_muParser.vcxproj.filters
muparser_v2_2_4/build/msvc2013/muparser_muParser.vcxproj.filters
muparser_v2_2_4/build/bakefiles/._Bakefiles.bkgen
muparser_v2_2_4/build/bakefiles/Bakefiles.bkgen
muparser_v2_2_4/build/bakefiles/._howto.txt
muparser_v2_2_4/build/bakefiles/howto.txt
muparser_v2_2_4/build/bakefiles/._muparser.bkl
muparser_v2_2_4/build/bakefiles/muparser.bkl
muparser_v2_2_4/build/bakefiles/._presets
muparser_v2_2_4/build/bakefiles/presets/
muparser_v2_2_4/build/bakefiles/presets/._debugopt.bkl
muparser_v2_2_4/build/bakefiles/presets/debugopt.bkl
muparser_v2_2_4/build/bakefiles/presets/._setbuilddir.bkl
muparser_v2_2_4/build/bakefiles/presets/setbuilddir.bkl
muparser_v2_2_4/build/bakefiles/presets/._sharedopt.bkl
muparser_v2_2_4/build/bakefiles/presets/sharedopt.bkl
muparser_v2_2_4/build/bakefiles/presets/._unicodeopt.bkl
muparser_v2_2_4/build/bakefiles/presets/unicodeopt.bkl
muparser_v2_2_4/build/autoconf/._aclocal.m4
muparser_v2_2_4/build/autoconf/aclocal.m4
muparser_v2_2_4/build/autoconf/._acregen.sh
muparser_v2_2_4/build/autoconf/acregen.sh
muparser_v2_2_4/build/autoconf/._autoconf_inc.m4
muparser_v2_2_4/build/autoconf/autoconf_inc.m4
muparser_v2_2_4/build/autoconf/._bakefile-presets.m4
muparser_v2_2_4/build/autoconf/bakefile-presets.m4
muparser_v2_2_4/build/autoconf/._config.guess
muparser_v2_2_4/build/autoconf/config.guess
muparser_v2_2_4/build/autoconf/._config.sub
muparser_v2_2_4/build/autoconf/config.sub
muparser_v2_2_4/build/autoconf/._configure.ac
muparser_v2_2_4/build/autoconf/configure.ac
muparser_v2_2_4/build/autoconf/._install-sh
muparser_v2_2_4/build/autoconf/install-sh
muparser_v2_2_4/build/autoconf/._muparser.pc.in
muparser_v2_2_4/build/autoconf/muparser.pc.in
muparser_v2_2_4/._configure
muparser_v2_2_4/configure
muparser_v2_2_4/._docs
muparser_v2_2_4/docs/
muparser_v2_2_4/docs/._Doxyfile
muparser_v2_2_4/docs/Doxyfile
muparser_v2_2_4/docs/._muparser_doc.html
muparser_v2_2_4/docs/muparser_doc.html
muparser_v2_2_4/._include
muparser_v2_2_4/include/
muparser_v2_2_4/include/._muParser.h
muparser_v2_2_4/include/muParser.h
muparser_v2_2_4/include/._muParserBase.h
muparser_v2_2_4/include/muParserBase.h
muparser_v2_2_4/include/._muParserBytecode.h
muparser_v2_2_4/include/muParserBytecode.h
muparser_v2_2_4/include/._muParserCallback.h
muparser_v2_2_4/include/muParserCallback.h
muparser_v2_2_4/include/._muParserDef.h
muparser_v2_2_4/include/muParserDef.h
muparser_v2_2_4/include/._muParserDLL.h
muparser_v2_2_4/include/muParserDLL.h
muparser_v2_2_4/include/._muParserError.h
muparser_v2_2_4/include/muParserError.h
muparser_v2_2_4/include/._muParserFixes.h
muparser_v2_2_4/include/muParserFixes.h
muparser_v2_2_4/include/._muParserInt.h
muparser_v2_2_4/include/muParserInt.h
muparser_v2_2_4/include/._muParserStack.h
muparser_v2_2_4/include/muParserStack.h
muparser_v2_2_4/include/._muParserTemplateMagic.h
muparser_v2_2_4/include/muParserTemplateMagic.h
muparser_v2_2_4/include/._muParserTest.h
muparser_v2_2_4/include/muParserTest.h
muparser_v2_2_4/include/._muParserToken.h
muparser_v2_2_4/include/muParserToken.h
muparser_v2_2_4/include/._muParserTokenReader.h
muparser_v2_2_4/include/muParserTokenReader.h
muparser_v2_2_4/._lib
muparser_v2_2_4/lib/
muparser_v2_2_4/lib/._Readme.txt
muparser_v2_2_4/lib/Readme.txt
muparser_v2_2_4/._samples
muparser_v2_2_4/samples/
muparser_v2_2_4/samples/._example1
muparser_v2_2_4/samples/example1/
muparser_v2_2_4/samples/._example2
muparser_v2_2_4/samples/example2/
muparser_v2_2_4/samples/example2/._example2.c
muparser_v2_2_4/samples/example2/example2.c
muparser_v2_2_4/samples/example2/._muparser32.dll
muparser_v2_2_4/samples/example2/muparser32.dll
muparser_v2_2_4/samples/example2/._muparser32.lib
muparser_v2_2_4/samples/example2/muparser32.lib
muparser_v2_2_4/samples/example2/._muparser64.dll
muparser_v2_2_4/samples/example2/muparser64.dll
muparser_v2_2_4/samples/example2/._muparser64.lib
muparser_v2_2_4/samples/example2/muparser64.lib
muparser_v2_2_4/samples/example2/._muparserd32.dll
muparser_v2_2_4/samples/example2/muparserd32.dll
muparser_v2_2_4/samples/example2/._muparserd32.lib
muparser_v2_2_4/samples/example2/muparserd32.lib
muparser_v2_2_4/samples/example2/._muparserd64.dll
muparser_v2_2_4/samples/example2/muparserd64.dll
muparser_v2_2_4/samples/example2/._muparserd64.lib
muparser_v2_2_4/samples/example2/muparserd64.lib
muparser_v2_2_4/samples/example2/._Readme.txt
muparser_v2_2_4/samples/example2/Readme.txt
muparser_v2_2_4/samples/example1/._example1.cpp
muparser_v2_2_4/samples/example1/example1.cpp
muparser_v2_2_4/._src
muparser_v2_2_4/src/
muparser_v2_2_4/src/._muParser.cpp
muparser_v2_2_4/src/muParser.cpp
muparser_v2_2_4/src/._muParserBase.cpp
muparser_v2_2_4/src/muParserBase.cpp
muparser_v2_2_4/src/._muParserBytecode.cpp
muparser_v2_2_4/src/muParserBytecode.cpp
muparser_v2_2_4/src/._muParserCallback.cpp
muparser_v2_2_4/src/muParserCallback.cpp
muparser_v2_2_4/src/._muParserDLL.cpp
muparser_v2_2_4/src/muParserDLL.cpp
muparser_v2_2_4/src/._muParserError.cpp
muparser_v2_2_4/src/muParserError.cpp
muparser_v2_2_4/src/._muParserInt.cpp
muparser_v2_2_4/src/muParserInt.cpp
muparser_v2_2_4/src/._muParserTest.cpp
muparser_v2_2_4/src/muParserTest.cpp
muparser_v2_2_4/src/._muParserTokenReader.cpp
muparser_v2_2_4/src/muParserTokenReader.cpp
Patch #0 (bionetgen-fix_linker.patch):
+ echo 'Patch #0 (bionetgen-fix_linker.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0
patching file bng2/Network3/CMakeLists.txt
Patch #1 (bionetgen-fix_cmake_minimum.patch):
+ echo 'Patch #1 (bionetgen-fix_cmake_minimum.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0
patching file bng2/Network3/CMakeLists.txt
patching file bng2/Network3/cvode-2.6.0/CMakeLists.txt
Patch #2 (bionetgen-cmake-c99.patch):
+ echo 'Patch #2 (bionetgen-cmake-c99.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .c99 --fuzz=0
patching file bng2/Network3/cvode-2.6.0/config/SundialsFortran.cmake
+ rm -f bng2/libsource/cvode-2.6.0.tar.gz bng2/libsource/muparser_v2_2_4.tar.gz
+ popd
~/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.TxLHuB
+ umask 022
+ cd /builddir/build/BUILD/bionetgen-2.9.0-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bionetgen-2.9.0
+ export CMAKE_POLICY_VERSION_MINIMUM=3.5
+ CMAKE_POLICY_VERSION_MINIMUM=3.5
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17'
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations'
~/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3 ~/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0
+ pushd bionetgen-BioNetGen-2.9.0/bng2/Network3
+ cd muparser_v2_2_4
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./build/autoconf/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./build/autoconf/config.sub
++ basename ./build/autoconf/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./build/autoconf/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './build/autoconf/config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./build/autoconf/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./build/autoconf/config.guess
++ basename ./build/autoconf/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./build/autoconf/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './build/autoconf/config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
+ ./configure --build=i686-redhat-linux --host=i686-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/bin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared=no --enable-static=yes --enable-samples=no
configure: WARNING: unrecognized options: --enable-static
checking build system type... i686-redhat-linux-gnu
checking host system type... i686-redhat-linux-gnu
checking target system type... i686-redhat-linux-gnu
checking for gawk... gawk
checking for a BSD-compatible install... /usr/bin/install -c
checking whether ln -s works... yes
checking for i686-redhat-linux-ranlib... no
checking for ranlib... ranlib
checking for i686-redhat-linux-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking for the --enable-debug option... no
checking for the --enable-shared option... no
checking for the --enable-samples option... no
checking whether we are using the Intel C compiler... no
checking whether we are using the Intel C++ compiler... no
checking whether we are using the Sun C++ compiler... no
checking for i686-redhat-linux-ranlib... ranlib
checking whether ln -s works... yes
checking whether make sets $(MAKE)... yes
checking for i686-redhat-linux-ar... no
checking for ar... ar
checking for i686-redhat-linux-strip... no
checking for strip... strip
checking for i686-redhat-linux-nm... no
checking for nm... nm
checking for command to install directories... /usr/bin/install -c -d
checking if make is GNU make... egrep: warning: egrep is obsolescent; using grep -E
yes
checking for dependency tracking method... disabled
configure: creating ./config.status
config.status: creating Makefile
config.status: creating build/autoconf/muparser.pc

 ----------------------------------------------------------------
  Configuration for muparser 2.2.4 successfully completed.
configure: WARNING: unrecognized options: --enable-static
  Summary of main configuration settings for muparser:
  - STATIC mode
  - RELEASE build
  - SAMPLES disabled
  Now, just run make.
 ----------------------------------------------------------------

+ /usr/bin/make -O -j4 V=1 VERBOSE=1
g++ -c -o muParser_lib_muParserCallback.o -DNDEBUG   -I./include  -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations ./src/muParserCallback.cpp
g++ -c -o muParser_lib_muParserDLL.o -DNDEBUG   -I./include  -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations ./src/muParserDLL.cpp
g++ -c -o muParser_lib_muParser.o -DNDEBUG   -I./include  -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations ./src/muParser.cpp
g++ -c -o muParser_lib_muParserBytecode.o -DNDEBUG   -I./include  -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations ./src/muParserBytecode.cpp
./src/muParserBytecode.cpp: In member function ‘void mu::ParserByteCode::AddOp(mu::ECmdCode)’:
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmLE’ not handled in switch [-Wswitch]
  213 |         switch(a_Oprt)
      |               ^
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmGE’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmNEQ’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmEQ’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmLT’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmGT’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmLAND’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmLOR’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmASSIGN’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmBO’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmBC’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmIF’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmELSE’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmENDIF’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmARG_SEP’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmVAR’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmVAL’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmVARPOW2’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmVARPOW3’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmVARPOW4’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmVARMUL’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmPOW2’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmFUNC’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmFUNC_STR’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmFUNC_BULK’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmSTRING’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmOPRT_BIN’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmOPRT_POSTFIX’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmOPRT_INFIX’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmEND’ not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value ‘cmUNKNOWN’ not handled in switch [-Wswitch]
g++ -c -o muParser_lib_muParserError.o -DNDEBUG   -I./include  -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations ./src/muParserError.cpp
g++ -c -o muParser_lib_muParserInt.o -DNDEBUG   -I./include  -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations ./src/muParserInt.cpp
g++ -c -o muParser_lib_muParserTokenReader.o -DNDEBUG   -I./include  -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations ./src/muParserTokenReader.cpp
g++ -c -o muParser_lib_muParserBase.o -DNDEBUG   -I./include  -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations ./src/muParserBase.cpp
./src/muParserBase.cpp: In member function ‘void mu::ParserBase::ApplyFunc(mu::ParserStack<mu::ParserToken<double, std::__cxx11::basic_string<char> > >&, mu::ParserStack<mu::ParserToken<double, std::__cxx11::basic_string<char> > >&, int) const’:
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmLE’ not handled in switch [-Wswitch]
  838 |     switch(funTok.GetCode())
      |           ^
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmGE’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmNEQ’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmEQ’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmLT’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmGT’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmADD’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmSUB’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmMUL’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmDIV’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmPOW’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmLAND’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmLOR’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmASSIGN’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmBO’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmBC’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmIF’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmELSE’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmENDIF’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmARG_SEP’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmVAR’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmVAL’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmVARPOW2’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmVARPOW3’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmVARPOW4’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmVARMUL’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmPOW2’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmSTRING’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmEND’ not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value ‘cmUNKNOWN’ not handled in switch [-Wswitch]
g++ -c -o muParser_lib_muParserTest.o -DNDEBUG   -I./include  -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations ./src/muParserTest.cpp
./src/muParserTest.cpp:1387: warning: ignoring ‘#pragma warning ’ [-Wunknown-pragmas]
 1387 |           #pragma warning(push)
./src/muParserTest.cpp:1388: warning: ignoring ‘#pragma warning ’ [-Wunknown-pragmas]
 1388 |           #pragma warning(disable:4127)
./src/muParserTest.cpp:1390: warning: ignoring ‘#pragma warning ’ [-Wunknown-pragmas]
 1390 |           #pragma warning(pop)
rm -f lib/libmuparser.a
ar rcu lib/libmuparser.a muParser_lib_muParser.o muParser_lib_muParserBase.o muParser_lib_muParserBytecode.o muParser_lib_muParserCallback.o muParser_lib_muParserDLL.o muParser_lib_muParserError.o muParser_lib_muParserInt.o muParser_lib_muParserTest.o muParser_lib_muParserTokenReader.o
ranlib lib/libmuparser.a
+ cd ../
+ make -j1 -C src/util/mathutils
make: Entering directory '/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/util/mathutils'
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o allocate.o allocate.c
ar -rv libmathutils.a allocate.o
ar: creating libmathutils.a
a - allocate.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o cabs.o cabs.c
ar -rv libmathutils.a cabs.o
a - cabs.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o cadd.o cadd.c
ar -rv libmathutils.a cadd.o
a - cadd.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o cconj.o cconj.c
ar -rv libmathutils.a cconj.o
a - cconj.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o cmult.o cmult.c
ar -rv libmathutils.a cmult.o
a - cmult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o complex_zero.o complex_zero.c
ar -rv libmathutils.a complex_zero.o
a - complex_zero.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o copy_vector.o copy_vector.c
ar -rv libmathutils.a copy_vector.o
a - copy_vector.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o cprob.o cprob.c
ar -rv libmathutils.a cprob.o
a - cprob.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o csub.o csub.c
ar -rv libmathutils.a csub.o
a - csub.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o dotp.o dotp.c
ar -rv libmathutils.a dotp.o
a - dotp.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o eigensystem.o eigensystem.c
ar -rv libmathutils.a eigensystem.o
a - eigensystem.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o expi.o expi.c
ar -rv libmathutils.a expi.o
a - expi.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o gram_schmidt.o gram_schmidt.c
ar -rv libmathutils.a gram_schmidt.o
a - gram_schmidt.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o herm_matrix_mult.o herm_matrix_mult.c
ar -rv libmathutils.a herm_matrix_mult.o
a - herm_matrix_mult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o herm_matrix_vector_mult.o herm_matrix_vector_mult.c
ar -rv libmathutils.a herm_matrix_vector_mult.o
a - herm_matrix_vector_mult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o icmult.o icmult.c
ar -rv libmathutils.a icmult.o
a - icmult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o init.o init.c
ar -rv libmathutils.a init.o
a - init.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o integration.o integration.c
ar -rv libmathutils.a integration.o
a - integration.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o linsolve.o linsolve.c
ar -rv libmathutils.a linsolve.o
a - linsolve.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o matherr.o matherr.c
ar -rv libmathutils.a matherr.o
a - matherr.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o matrix_add.o matrix_add.c
ar -rv libmathutils.a matrix_add.o
a - matrix_add.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o matrix_elt.o matrix_elt.c
ar -rv libmathutils.a matrix_elt.o
a - matrix_elt.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o matrix_mult.o matrix_mult.c
ar -rv libmathutils.a matrix_mult.o
a - matrix_mult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o matrix_sub.o matrix_sub.c
ar -rv libmathutils.a matrix_sub.o
a - matrix_sub.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o matrix_transpose.o matrix_transpose.c
ar -rv libmathutils.a matrix_transpose.o
a - matrix_transpose.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o matrix_vector_mult.o matrix_vector_mult.c
ar -rv libmathutils.a matrix_vector_mult.o
a - matrix_vector_mult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o matrixexp.o matrixexp.c
ar -rv libmathutils.a matrixexp.o
a - matrixexp.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o minimum.o minimum.c
ar -rv libmathutils.a minimum.o
a - minimum.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o norm.o norm.c
ar -rv libmathutils.a norm.o
a - norm.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o normsq.o normsq.c
ar -rv libmathutils.a normsq.o
a - normsq.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o project.o project.c
ar -rv libmathutils.a project.o
a - project.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o random.o random.c
ar -rv libmathutils.a random.o
a - random.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o rcmult.o rcmult.c
ar -rv libmathutils.a rcmult.o
a - rcmult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o rect_transpose.o rect_transpose.c
ar -rv libmathutils.a rect_transpose.o
a - rect_transpose.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o roots.o roots.c
roots.c: In function ‘ROOT_FIND’:
roots.c:55:13: warning: ‘e’ may be used uninitialized [-Wmaybe-uninitialized]
   55 |         if (fabs(e) >= tol1 && fabs(fa) > fabs(fb)) {
      |             ^~~~~~~
roots.c:32:29: note: ‘e’ was declared here
   32 |     double a=x1,b=x2,c=x2,d,e,min1,min2;
      |                             ^
ar -rv libmathutils.a roots.o
a - roots.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o runge-kutta.o runge-kutta.c
ar -rv libmathutils.a runge-kutta.o
a - runge-kutta.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o scale_vector.o scale_vector.c
ar -rv libmathutils.a scale_vector.o
a - scale_vector.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o splines.o splines.c
ar -rv libmathutils.a splines.o
a - splines.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o sum_vector.o sum_vector.c
ar -rv libmathutils.a sum_vector.o
a - sum_vector.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o svd.o svd.c
ar -rv libmathutils.a svd.o
a - svd.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o sym_linsolve.o sym_linsolve.c
ar -rv libmathutils.a sym_linsolve.o
a - sym_linsolve.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o sym_matrix_mult.o sym_matrix_mult.c
ar -rv libmathutils.a sym_matrix_mult.o
a - sym_matrix_mult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o sym_matrix_vector_mult.o sym_matrix_vector_mult.c
ar -rv libmathutils.a sym_matrix_vector_mult.o
a - sym_matrix_vector_mult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o sympos_linsolve.o sympos_linsolve.c
ar -rv libmathutils.a sympos_linsolve.o
a - sympos_linsolve.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o vector_add.o vector_add.c
ar -rv libmathutils.a vector_add.o
a - vector_add.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o vector_dist.o vector_dist.c
ar -rv libmathutils.a vector_dist.o
a - vector_dist.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o zcopy_vector.o zcopy_vector.c
ar -rv libmathutils.a zcopy_vector.o
a - zcopy_vector.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o zdotc.o zdotc.c
ar -rv libmathutils.a zdotc.o
a - zdotc.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o zdotu.o zdotu.c
ar -rv libmathutils.a zdotu.o
a - zdotu.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o zmatrix_mult.o zmatrix_mult.c
ar -rv libmathutils.a zmatrix_mult.o
a - zmatrix_mult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o zmatrix_transpose.o zmatrix_transpose.c
ar -rv libmathutils.a zmatrix_transpose.o
a - zmatrix_transpose.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o zmatrix_vector_mult.o zmatrix_vector_mult.c
ar -rv libmathutils.a zmatrix_vector_mult.o
a - zmatrix_vector_mult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o znorm.o znorm.c
ar -rv libmathutils.a znorm.o
a - znorm.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o znormsq.o znormsq.c
ar -rv libmathutils.a znormsq.o
a - znormsq.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o zrscale_vector.o zrscale_vector.c
ar -rv libmathutils.a zrscale_vector.o
a - zrscale_vector.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o zscale_vector.o zscale_vector.c
ar -rv libmathutils.a zscale_vector.o
a - zscale_vector.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o zsum_vector.o zsum_vector.c
ar -rv libmathutils.a zsum_vector.o
a - zsum_vector.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o zsym_linsolve.o zsym_linsolve.c
ar -rv libmathutils.a zsym_linsolve.o
a - zsym_linsolve.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o zmatrix_add.o zmatrix_add.c
ar -rv libmathutils.a zmatrix_add.o
a - zmatrix_add.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -c -o zmatrix_sub.o zmatrix_sub.c
ar -rv libmathutils.a zmatrix_sub.o
a - zmatrix_sub.o
ranlib ./libmathutils.a
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/util/mathutils'
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17'
+ mkdir -p cvode-2.6.0/build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B cvode-2.6.0/build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -S cvode-2.6.0 -B cvode-2.6.0/build '-DCMAKE_MODULE_LINKER_FLAGS:STRING=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  ' -DCMAKE_INSTALL_PREFIX=/usr -DEXAMPLES_ENABLE=OFF -DEXAMPLES_INSTALL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DBUILD_STATIC_LIBS:BOOL=ON -DMPI_ENABLE:BOOL=OFF -DFCMIX_ENABLE:BOOL=ON
CMake Warning:
  Ignoring extra path from command line:

   "/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3"


-- The C compiler identification is GNU 16.0.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- The Fortran compiler identification is GNU 16.0.0
-- Searching for a Fortran compiler... /usr/bin/gfortran
CMake Warning (dev) at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt:1 (PROJECT):
  cmake_minimum_required() should be called prior to this top-level project()
  call.  Please see the cmake-commands(7) manual for usage documentation of
  both commands.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Trying to compile and link a simple Fortran program... OK
CMake Warning (dev) at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt:1 (PROJECT):
  cmake_minimum_required() should be called prior to this top-level project()
  call.  Please see the cmake-commands(7) manual for usage documentation of
  both commands.
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) in /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt:
  No cmake_minimum_required command is present.  A line of code such as

    cmake_minimum_required(VERSION 3.31)

  should be added at the top of the file.  The version specified may be lower
  if you wish to support older CMake versions for this project.  For more
  information run "cmake --help-policy CMP0000".
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt:1 (PROJECT):
  cmake_minimum_required() should be called prior to this top-level project()
  call.  Please see the cmake-commands(7) manual for usage documentation of
  both commands.
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) in /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt:
  No cmake_minimum_required command is present.  A line of code such as

    cmake_minimum_required(VERSION 3.31)

  should be added at the top of the file.  The version specified may be lower
  if you wish to support older CMake versions for this project.  For more
  information run "cmake --help-policy CMP0000".
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt:1 (PROJECT):
  cmake_minimum_required() should be called prior to this top-level project()
  call.  Please see the cmake-commands(7) manual for usage documentation of
  both commands.
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) in /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt:
  No cmake_minimum_required command is present.  A line of code such as

    cmake_minimum_required(VERSION 3.31)

  should be added at the top of the file.  The version specified may be lower
  if you wish to support older CMake versions for this project.  For more
  information run "cmake --help-policy CMP0000".
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt:1 (PROJECT):
  cmake_minimum_required() should be called prior to this top-level project()
  call.  Please see the cmake-commands(7) manual for usage documentation of
  both commands.
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) in /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt:
  No cmake_minimum_required command is present.  A line of code such as

    cmake_minimum_required(VERSION 3.31)

  should be added at the top of the file.  The version specified may be lower
  if you wish to support older CMake versions for this project.  For more
  information run "cmake --help-policy CMP0000".
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Determining Fortran name-mangling scheme... OK
-- Added NVECTOR_SERIAL module
-- Added CVODE module
-- Added CVODE FCMIX module
-- Configuring done (1.0s)
-- Generating done (0.0s)
-- Build files have been written to: /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    CMAKE_INSTALL_FULL_SBINDIR
    CMAKE_INSTALL_SBINDIR
    CMAKE_MODULE_LINKER_FLAGS
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR


+ /usr/bin/cmake --build cvode-2.6.0/build -j4 --verbose
Change Dir: '/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build'

Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4
/usr/bin/cmake -S/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0 -B/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/CMakeFiles /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build//CMakeFiles/progress.marks
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gmake[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build'
/usr/bin/gmake  -f src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/build.make src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/depend
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cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0 /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/nvec_ser /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/nvec_ser /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build'
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0 /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/nvec_ser /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/nvec_ser /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build'
gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build'
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0 /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode/CMakeFiles/sundials_cvode_static.dir/DependInfo.cmake "--color="
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0 /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build'
gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build'
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[  2%] Building C object src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/nvec_ser/. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o -MF CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o.d -o CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/nvec_ser/nvector_serial.c
[  5%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode.c.o
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cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/cvode.c
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/nvec_ser/. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o -MF CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o.d -o CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/nvec_ser/fnvector_serial.c
[ 10%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvband.c
[ 13%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvbbd.c
[ 16%] Linking C static library libsundials_fnvecserial.a
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/cmake -P CMakeFiles/sundials_fnvecserial_static.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/cmake -E cmake_link_script CMakeFiles/sundials_fnvecserial_static.dir/link.txt --verbose=1
/usr/bin/ar qc libsundials_fnvecserial.a CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o
/usr/bin/ranlib libsundials_fnvecserial.a
gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build'
[ 16%] Built target sundials_fnvecserial_static
[ 18%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/cvode_io.c
[ 21%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvbp.c
[ 24%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvdense.c
[ 27%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvewt.c
[ 29%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c
[ 32%] Building C object src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o
[ 35%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/nvec_ser/. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o -MF CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o.d -o CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/sundials/sundials_math.c
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvode.c
[ 37%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/cvode_direct.c
[ 40%] Linking C static library libsundials_nvecserial.a
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/cmake -P CMakeFiles/sundials_nvecserial_static.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/cmake -E cmake_link_script CMakeFiles/sundials_nvecserial_static.dir/link.txt --verbose=1
/usr/bin/ar qc libsundials_nvecserial.a CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o
/usr/bin/ranlib libsundials_nvecserial.a
gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build'
[ 40%] Built target sundials_nvecserial_static
[ 43%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvpreco.c
[ 45%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvroot.c
[ 48%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/cvode_band.c
[ 51%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/cvode_dense.c
[ 54%] Linking C static library libsundials_fcvode.a
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/cmake -P CMakeFiles/sundials_fcvode_static.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sundials_fcvode_static.dir/link.txt --verbose=1
/usr/bin/ar qc libsundials_fcvode.a CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o
/usr/bin/ranlib libsundials_fcvode.a
gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build'
[ 54%] Built target sundials_fcvode_static
[ 56%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/cvode_diag.c
[ 59%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/cvode_spils.c
[ 62%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/cvode_spbcgs.c
[ 64%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spgmr.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spgmr.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_spgmr.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_spgmr.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/cvode_spgmr.c
[ 67%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/cvode_sptfqmr.c
[ 70%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_bandpre.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_bandpre.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_bandpre.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_bandpre.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/cvode_bandpre.c
[ 72%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_bbdpre.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_bbdpre.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_bbdpre.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_bbdpre.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/cvode_bbdpre.c
[ 75%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_nvector.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_nvector.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_nvector.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_nvector.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/sundials/sundials_nvector.c
[ 78%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_math.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_math.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_math.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_math.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/sundials/sundials_math.c
[ 81%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/sundials/sundials_direct.c
[ 83%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/sundials/sundials_band.c
[ 86%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/sundials/sundials_dense.c
[ 89%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/sundials/sundials_iterative.c
[ 91%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/sundials/sundials_spbcgs.c
[ 97%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o
[ 97%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/sundials/sundials_spgmr.c
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/src/sundials/sundials_sptfqmr.c
[100%] Linking C static library libsundials_cvode.a
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/cmake -P CMakeFiles/sundials_cvode_static.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/cmake -E cmake_link_script CMakeFiles/sundials_cvode_static.dir/link.txt --verbose=1
/usr/bin/ar qc libsundials_cvode.a CMakeFiles/sundials_cvode_static.dir/cvode.c.o CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o CMakeFiles/sundials_cvode_static.dir/cvode_spgmr.c.o CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o CMakeFiles/sundials_cvode_static.dir/cvode_bandpre.c.o CMakeFiles/sundials_cvode_static.dir/cvode_bbdpre.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_nvector.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_math.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o
/usr/bin/ranlib libsundials_cvode.a
gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build'
[100%] Built target sundials_cvode_static
gmake[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/cvode-2.6.0/build/CMakeFiles 0

+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -I../src/util/mathutils -I../cvode-2.6.0/include -I../muparser_v2_2_4/include'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -I../src/util/mathutils -I../cvode-2.6.0/include -I../muparser_v2_2_4/include'
+ export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include  -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser'
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include  -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser'
+ mkdir -p build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-unused-variable -Wno-unused-but-set-variable -std=gnu17 -I../src/util/mathutils -I../cvode-2.6.0/include -I../muparser_v2_2_4/include'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include  -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DBUILD_SHARED_LIBS:BOOL=OFF -DBUILD_STATIC_LIBS:BOOL=ON
-- The C compiler identification is GNU 16.0.0
-- The CXX compiler identification is GNU 16.0.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
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/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include  -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/function.cpp.o -MF CMakeFiles/run_network.dir/src/model/function.cpp.o.d -o CMakeFiles/run_network.dir/src/model/function.cpp.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/model/function.cpp
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/run_network.cpp: In function ‘int main(int, char**)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/run_network.cpp:95:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   95 |         register int i/*, j*/;
      |                      ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘void read_functions_array(const char*, Elt_array*&, std::map<std::__cxx11::basic_string<char>, double*>&, std::map<std::__cxx11::basic_string<char>, int>, std::map<std::__cxx11::basic_string<char>, int>, double*)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:440:13: warning: variable ‘index’ set but not used [-Wunused-but-set-variable=]
  440 |         int index;
      |             ^~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘Rxn* new_Rxn(int, int, int, int*, int*, int, int, int*, double, Elt_array*)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:1132:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1132 |         register int i;
      |                      ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘int* read_indices_Rxn(char*, int*, Elt_array*, int)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:1543:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1543 |         register int i;
      |                      ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘void print_Rxn_array(FILE*, Rxn_array*, Elt_array*, Elt_array*)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:1925:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1925 |         register int i;
      |                      ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:1927:15: warning: variable ‘sarr’ set but not used [-Wunused-but-set-variable=]
 1927 |         Elt **sarr, **rarr;
      |               ^~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘int n_species_active()’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:2068:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 2068 |         register int i;
      |                      ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘int get_conc_network(double*)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:2088:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 2088 |         register int i;
      |                      ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘int set_conc_network(double*)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:2110:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 2110 |         register int i, n_species;
      |                      ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:2110:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 2110 |         register int i, n_species;
      |                         ^~~~~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘int rxn_rates_network(double*, int)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:2729:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 2729 |         register int i;
      |                      ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/run_network.cpp:735:84: warning: variable ‘n_deriv_calls_last’ set but not used [-Wunused-but-set-variable=]
  735 |                 long int /*n_steps = 0, n_steps_last = 0,*/ n_rate_calls_last = 0, n_deriv_calls_last = 0;
      |                                                                                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘void derivs_network(double, double*, double*)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:2782:15: warning: unused variable ‘rarray’ [-Wunused-variable]
 2782 |         Rxn **rarray, *rxn;
      |               ^~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:2783:15: warning: variable ‘rates’ set but not used [-Wunused-but-set-variable=]
 2783 |         Elt** rates;
      |               ^~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘int print_derivs_network(FILE*)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:2957:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 2957 |         register int i/*,j*/;
      |                      ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘int print_derivs_species_network(FILE*)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:2990:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 2990 |         register int i/*,j*/;
      |                      ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘int print_rates_network(FILE*, int)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3019:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 3019 |         register int i;
      |                      ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘void sparse_jac_matlab(FILE*)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3198:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 3198 |         register int i, j, r, n;
      |                      ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3198:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 3198 |         register int i, j, r, n;
      |                         ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3198:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 3198 |         register int i, j, r, n;
      |                            ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3198:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 3198 |         register int i, j, r, n;
      |                               ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3204:15: warning: variable ‘rates’ set but not used [-Wunused-but-set-variable=]
 3204 |         Elt** rates;
      |               ^~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘void CVjac_network(long int, DlsMat, realtype, N_Vector, N_Vector, void*, N_Vector, N_Vector, N_Vector)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3272:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 3272 |         register int i, j, r, n;
      |                      ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3272:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 3272 |         register int i, j, r, n;
      |                         ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3272:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 3272 |         register int i, j, r, n;
      |                            ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3272:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 3272 |         register int i, j, r, n;
      |                               ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3277:15: warning: variable ‘rates’ set but not used [-Wunused-but-set-variable=]
 3277 |         Elt** rates;
      |               ^~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘int CVjtimes(N_Vector, N_Vector, realtype, N_Vector, N_Vector, void*, N_Vector)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3333:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 3333 |         register int i, j, r, n;
      |                      ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3333:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 3333 |         register int i, j, r, n;
      |                         ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3333:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 3333 |         register int i, j, r, n;
      |                            ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3333:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 3333 |         register int i, j, r, n;
      |                               ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3338:15: warning: variable ‘rates’ set but not used [-Wunused-but-set-variable=]
 3338 |         Elt** rates;
      |               ^~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘FILE* init_print_concentrations_network(char*, int)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3683:16: warning: variable ‘error’ set but not used [-Wunused-but-set-variable=]
 3683 |         int i, error = 0;
      |                ^~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘FILE* init_print_group_concentrations_network(char*, int, bool)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3765:13: warning: variable ‘error’ set but not used [-Wunused-but-set-variable=]
 3765 |         int error = 0;
      |             ^~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘FILE* init_print_species_stats(char*, int)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3951:13: warning: variable ‘error’ set but not used [-Wunused-but-set-variable=]
 3951 |         int error = 0;
      |             ^~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘FILE* init_print_flux_network(char*)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4019:13: warning: variable ‘error’ set but not used [-Wunused-but-set-variable=]
 4019 |         int error = 0;
      |             ^~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘int print_flux_network(FILE*, double, int)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4037:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 4037 |         register int i;
      |                      ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘void print_rxn_update_list(FILE*)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4376:29: warning: variable ‘rxn’ set but not used [-Wunused-but-set-variable=]
 4376 |         Rxn /* **rarray,*/ *rxn;
      |                             ^~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘void print_as_reactant_list(FILE*)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4410:13: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable=]
 4410 |         int offset;
      |             ^~~~~~
[  9%] Building CXX object CMakeFiles/run_network.dir/src/model/observable.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include  -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/observable.cpp.o -MF CMakeFiles/run_network.dir/src/model/observable.cpp.o.d -o CMakeFiles/run_network.dir/src/model/observable.cpp.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/model/observable.cpp
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘int create_update_lists()’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4757:37: warning: unused variable ‘pp’ [-Wunused-variable]
 4757 |                                 int pp = GSP.func_param_affect.at(ff)-1;
      |                                     ^~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘int init_gillespie_direct_network(int, int)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4837:15: warning: unused variable ‘rarray’ [-Wunused-variable]
 4837 |         Rxn** rarray;
      |               ^~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘int init_adaptive_scaling_network(int, int, double, bool)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4905:15: warning: unused variable ‘rarray’ [-Wunused-variable]
 4905 |         Rxn** rarray;
      |               ^~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘int update_gillespie_direct_network(int, int)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4978:13: warning: unused variable ‘ip’ [-Wunused-variable]
 4978 |         int ip, ir, is, irxn;
      |             ^~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4978:17: warning: unused variable ‘ir’ [-Wunused-variable]
 4978 |         int ip, ir, is, irxn;
      |                 ^~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4978:21: warning: unused variable ‘is’ [-Wunused-variable]
 4978 |         int ip, ir, is, irxn;
      |                     ^~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4978:25: warning: unused variable ‘irxn’ [-Wunused-variable]
 4978 |         int ip, ir, is, irxn;
      |                         ^~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4980:14: warning: unused variable ‘rxn_dep’ [-Wunused-variable]
 4980 |         int *rxn_dep/*, *rxn_dep2, *rxn_dep3*/; /* boolean arrays to keep track of dependent
      |              ^~~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4983:17: warning: unused variable ‘arl’ [-Wunused-variable]
 4983 |         iarray *arl, *apl, *rul; /* species and reaction update lists */
      |                 ^~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4983:23: warning: unused variable ‘apl’ [-Wunused-variable]
 4983 |         iarray *arl, *apl, *rul; /* species and reaction update lists */
      |                       ^~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4983:29: warning: unused variable ‘rul’ [-Wunused-variable]
 4983 |         iarray *arl, *apl, *rul; /* species and reaction update lists */
      |                             ^~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4984:13: warning: unused variable ‘offset’ [-Wunused-variable]
 4984 |         int offset, r_index, p_index;
      |             ^~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4984:21: warning: unused variable ‘r_index’ [-Wunused-variable]
 4984 |         int offset, r_index, p_index;
      |                     ^~~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4984:30: warning: unused variable ‘p_index’ [-Wunused-variable]
 4984 |         int offset, r_index, p_index;
      |                              ^~~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4985:15: warning: unused variable ‘rarray’ [-Wunused-variable]
 4985 |         Rxn **rarray, *rxn;
      |               ^~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4985:24: warning: unused variable ‘rxn’ [-Wunused-variable]
 4985 |         Rxn **rarray, *rxn;
      |                        ^~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘int update_adaptive_scaling_network(int, int)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:5160:13: warning: unused variable ‘ip’ [-Wunused-variable]
 5160 |         int ip, ir, is, irxn;
      |             ^~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:5160:17: warning: unused variable ‘ir’ [-Wunused-variable]
 5160 |         int ip, ir, is, irxn;
      |                 ^~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:5160:21: warning: unused variable ‘is’ [-Wunused-variable]
 5160 |         int ip, ir, is, irxn;
      |                     ^~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:5160:25: warning: unused variable ‘irxn’ [-Wunused-variable]
 5160 |         int ip, ir, is, irxn;
      |                         ^~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:5162:14: warning: unused variable ‘rxn_dep’ [-Wunused-variable]
 5162 |         int *rxn_dep/*, *rxn_dep2, *rxn_dep3*/; /* boolean arrays to keep track of dependent
      |              ^~~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:5165:17: warning: unused variable ‘arl’ [-Wunused-variable]
 5165 |         iarray *arl, *apl, *rul; /* species and reaction update lists */
      |                 ^~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:5165:23: warning: unused variable ‘apl’ [-Wunused-variable]
 5165 |         iarray *arl, *apl, *rul; /* species and reaction update lists */
      |                       ^~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:5165:29: warning: unused variable ‘rul’ [-Wunused-variable]
 5165 |         iarray *arl, *apl, *rul; /* species and reaction update lists */
      |                             ^~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:5166:13: warning: unused variable ‘offset’ [-Wunused-variable]
 5166 |         int offset, r_index, p_index;
      |             ^~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:5166:21: warning: unused variable ‘r_index’ [-Wunused-variable]
 5166 |         int offset, r_index, p_index;
      |                     ^~~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:5166:30: warning: unused variable ‘p_index’ [-Wunused-variable]
 5166 |         int offset, r_index, p_index;
      |                              ^~~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:5167:15: warning: unused variable ‘rarray’ [-Wunused-variable]
 5167 |         Rxn **rarray, *rxn;
      |               ^~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:5167:24: warning: unused variable ‘rxn’ [-Wunused-variable]
 5167 |         Rxn **rarray, *rxn;
      |                        ^~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘void update_rxn_rates(int)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:5683:27: warning: variable ‘c’ set but not used [-Wunused-but-set-variable=]
 5683 |         double *a, anew, *c;
      |                           ^
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘void update_rxn_rates_has(int, double, bool)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:5747:27: warning: variable ‘c’ set but not used [-Wunused-but-set-variable=]
 5747 |         double *a, anew, *c;
      |                           ^
In file included from /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network3.hh:12,
                 from /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/run_network.cpp:46:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.h: At global scope:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.h:262:23: warning: ‘mu::value_type Mratio(mu::value_type, mu::value_type, mu::value_type)’ defined but not used [-Wunused-function]
  262 | static mu::value_type Mratio(mu::value_type a, mu::value_type b, mu::value_type z){
      |                       ^~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.h:258:23: warning: ‘mu::value_type If(mu::value_type, mu::value_type, mu::value_type)’ defined but not used [-Wunused-function]
  258 | static mu::value_type If(mu::value_type v1, mu::value_type v2, mu::value_type v3){
      |                       ^~
In file included from /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/run_network.cpp:39:
../src/util/mathutils/mathutils.h:364:15: warning: ‘dswap’ defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
../src/util/mathutils/mathutils.h:359:20: warning: ‘imarg2’ defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |                    ^~~~~~
../src/util/mathutils/mathutils.h:359:12: warning: ‘imarg1’ defined but not used [-Wunused-variable]
  359 | static int imarg1, imarg2;
      |            ^~~~~~
../src/util/mathutils/mathutils.h:356:22: warning: ‘marg2’ defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
../src/util/mathutils/mathutils.h:356:15: warning: ‘marg1’ defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
../src/util/mathutils/mathutils.h:354:12: warning: ‘isqrarg’ defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
../src/util/mathutils/mathutils.h:352:15: warning: ‘sqrarg’ defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
In file included from /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network3.hh:12,
                 from /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network3.cpp:8:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.h:262:23: warning: ‘mu::value_type Mratio(mu::value_type, mu::value_type, mu::value_type)’ defined but not used [-Wunused-function]
  262 | static mu::value_type Mratio(mu::value_type a, mu::value_type b, mu::value_type z){
      |                       ^~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.h:258:23: warning: ‘mu::value_type If(mu::value_type, mu::value_type, mu::value_type)’ defined but not used [-Wunused-function]
  258 | static mu::value_type If(mu::value_type v1, mu::value_type v2, mu::value_type v3){
      |                       ^~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: At global scope:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3332:12: warning: ‘int CVjtimes(N_Vector, N_Vector, realtype, N_Vector, N_Vector, void*, N_Vector)’ defined but not used [-Wunused-function]
 3332 | static int CVjtimes(N_Vector v, N_Vector Jv, realtype t, N_Vector y, N_Vector fy, void* jac_data, N_Vector tmp) {
      |            ^~~~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:3270:13: warning: ‘void CVjac_network(long int, DlsMat, realtype, N_Vector, N_Vector, void*, N_Vector, N_Vector, N_Vector)’ defined but not used [-Wunused-function]
 3270 | static void CVjac_network(long int N, DlsMat J, realtype t, N_Vector y, N_Vector fy, void* jac_data, N_Vector tmp1, N_Vector tmp2,
      |             ^~~~~~~~~~~~~
In file included from /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:38:
../src/util/mathutils/mathutils.h:364:15: warning: ‘dswap’ defined but not used [-Wunused-variable]
  364 | static double dswap;
      |               ^~~~~
../src/util/mathutils/mathutils.h:356:22: warning: ‘marg2’ defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |                      ^~~~~
../src/util/mathutils/mathutils.h:356:15: warning: ‘marg1’ defined but not used [-Wunused-variable]
  356 | static double marg1, marg2;
      |               ^~~~~
../src/util/mathutils/mathutils.h:354:12: warning: ‘isqrarg’ defined but not used [-Wunused-variable]
  354 | static int isqrarg;
      |            ^~~~~~~
../src/util/mathutils/mathutils.h:352:15: warning: ‘sqrarg’ defined but not used [-Wunused-variable]
  352 | static double sqrarg;
      |               ^~~~~~
[ 10%] Building CXX object CMakeFiles/run_network.dir/src/model/rateExpression.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include  -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/rateExpression.cpp.o -MF CMakeFiles/run_network.dir/src/model/rateExpression.cpp.o.d -o CMakeFiles/run_network.dir/src/model/rateExpression.cpp.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/model/rateExpression.cpp
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘rxn_rate_scaled(RXN*, double*, int, double&, double, bool) [clone .constprop.0]’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:2703:22: warning: ‘rate’ may be used uninitialized [-Wmaybe-uninitialized]
 2703 |         if (discrete && rate < 0.0){
      |             ~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:2328:16: note: ‘rate’ was declared here
 2328 |         double rate;
      |                ^~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘rxn_rate(RXN*, double*, int)’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:2303:22: warning: ‘rate’ may be used uninitialized [-Wmaybe-uninitialized]
 2303 |         if (discrete && rate < 0.0){
      |             ~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:2126:16: note: ‘rate’ was declared here
 2126 |         double rate;
      |                ^~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/run_network.cpp: In function ‘main’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/run_network.cpp:588:48: warning: ‘sample_time’ may be used uninitialized [-Wmaybe-uninitialized]
  588 |         else t_end = t_start + (double)n_sample*sample_time;
      |                                ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/run_network.cpp:106:12: note: ‘sample_time’ was declared here
  106 |     double sample_time, *sample_times = 0x0/*, *st, t1*/;
      |            ^~~~~~~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/run_network.cpp:1014:47: warning: ‘derivs’ may be used uninitialized [-Wmaybe-uninitialized]
 1014 |                                 derivs_network(t, conc, derivs);
      |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/run_network.cpp:117:32: note: ‘derivs’ was declared here
  117 |     double *conc, *conc_last, *derivs;
      |                                ^~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/run_network.cpp:1009:49: warning: ‘conc’ may be used uninitialized [-Wmaybe-uninitialized]
 1009 |                                 get_conc_network(conc);
      |                                 ~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/run_network.cpp:117:13: note: ‘conc’ was declared here
  117 |     double *conc, *conc_last, *derivs;
      |             ^~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/run_network.cpp:1010:45: warning: ‘conc_last’ may be used uninitialized [-Wmaybe-uninitialized]
 1010 |                                 delta = sqrt(VECTOR_DIST(conc, conc_last, n_species_network())) / n_species_network();
      |                                         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/run_network.cpp:117:20: note: ‘conc_last’ was declared here
  117 |     double *conc, *conc_last, *derivs;
      |                    ^~~~~~~~~
[ 12%] Building CXX object CMakeFiles/run_network.dir/src/model/reaction.cpp.o
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[ 14%] Building CXX object CMakeFiles/run_network.dir/src/model/simpleSpecies.cpp.o
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[ 16%] Building CXX object CMakeFiles/run_network.dir/src/pla/PLA.cpp.o
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/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu   -Wno-deprecated-declarations -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include  -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/util/misc.cpp.o -MF CMakeFiles/run_network.dir/src/util/misc.cpp.o.d -o CMakeFiles/run_network.dir/src/util/misc.cpp.o -c /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/util/misc.cpp
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp: In function ‘create_update_lists()’:
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4474:27: warning: ‘rarray’ may be used uninitialized [-Wmaybe-uninitialized]
 4474 |                 if (!(rxn = rarray[i]))
      |                      ~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/src/network.cpp:4459:15: note: ‘rarray’ was declared here
 4459 |         Rxn **rarray, *rxn;
      |               ^~~~~~
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[ 32%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/bioNetGenRxn.cpp.o
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[ 34%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/elementaryRxn.cpp.o
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[ 38%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/hillRxn.cpp.o
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[ 41%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/saturationRxn.cpp.o
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[ 43%] Building CXX object CMakeFiles/run_network.dir/src/pla/base/firingGenerator.cpp.o
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[ 45%] Building CXX object CMakeFiles/run_network.dir/src/pla/base/postleapChecker.cpp.o
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[ 47%] Building CXX object CMakeFiles/run_network.dir/src/pla/base/rxnClassifier.cpp.o
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[ 49%] Building CXX object CMakeFiles/run_network.dir/src/pla/base/tauCalculator.cpp.o
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[ 54%] Building CXX object CMakeFiles/run_network.dir/src/pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp.o
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[ 60%] Building CXX object CMakeFiles/run_network.dir/src/pla/fEuler/fEulerPreleapRB_TC.cpp.o
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[ 67%] Building CXX object CMakeFiles/run_network.dir/src/pla/fEuler/fEulerSB_PL.cpp.o
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[ 76%] Building CXX object CMakeFiles/run_network.dir/src/pla/util/g_Getter.cpp.o
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[ 80%] Building CXX object CMakeFiles/run_network.dir/src/pla/util/preleap_TC.cpp.o
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[ 81%] Building CXX object CMakeFiles/run_network.dir/src/pla/util/rbChecker.cpp.o
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[ 83%] Building CXX object CMakeFiles/run_network.dir/src/pla/util/sbChecker.cpp.o
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+ mkdir -p /builddir/build/BUILD/bionetgen-2.9.0-build
+ mkdir /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu  '
+ export CXXFLAGS
~/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Network3/build ~/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bionetgen-2.9.0
+ pushd bionetgen-BioNetGen-2.9.0/bng2/Network3/build
+ mkdir -vp /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/bin
mkdir: created directory '/builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr'
mkdir: created directory '/builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/bin'
+ install -pm 755 run_network /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/bin/
+ popd
~/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0
+ mkdir -vp /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/perl5/vendor_perl/BioNetGen
mkdir: created directory '/builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share'
mkdir: created directory '/builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/perl5'
mkdir: created directory '/builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/perl5/vendor_perl'
mkdir: created directory '/builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/perl5/vendor_perl/BioNetGen'
+ cp -r bionetgen-BioNetGen-2.9.0/bng2/Perl2 /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/perl5/vendor_perl/BioNetGen/
+ cp -r bionetgen-BioNetGen-2.9.0/bng2/BNG2.pl /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/perl5/vendor_perl/BioNetGen/
+ cp -a bionetgen-BioNetGen-2.9.0/bng2/Models2 /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/perl5/vendor_perl/BioNetGen/
+ rm -f /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/perl5/vendor_perl/BioNetGen/Models2/bin/run_network_i386-linux
+ rm -f /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/perl5/vendor_perl/BioNetGen/Models2/run_network
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.9.0-11.fc44 --unique-debug-suffix -2.9.0-11.fc44.i386 --unique-debug-src-base bionetgen-2.9.0-11.fc44.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0
find-debuginfo: starting
Extracting debug info from 1 files
DWARF-compressing 1 files
sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/bionetgen-2.9.0-11.fc44.i386
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ COMPRESS='gzip -9 -n'
+ COMPRESS_EXT=.gz
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-det --brp -j4 /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT
Scanned 59 directories and 289 files,
    processed 0 inodes,
    0 modified (0 replaced + 0 rewritten),
    0 unsupported format, 0 errors
+ /usr/bin/linkdupes --brp /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr
Scanned 58 directories and 289 files,
    considered 289 files, read 21 files, linked 2 files, 0 errors
    sum of sizes of linked files: 8703 bytes
Reading /builddir/build/BUILD/bionetgen-2.9.0-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.uLDPiU
+ umask 022
+ cd /builddir/build/BUILD/bionetgen-2.9.0-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bionetgen-2.9.0
+ pushd bionetgen-BioNetGen-2.9.0/bng2/Models2
~/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Models2 ~/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0
+ install -pm 755 ../Network3/build/run_network -D ./bin/run_network_i686-linux
+ install -pm 755 ../Network3/build/run_network -D ../bin/run_network_i686-linux
+ echo 'Running some tests ...'
Running some tests ...
+ ../BNG2.pl CaOscillate_Func.bngl CaOscillate_Sat.bngl catalysis.bngl egfr_net.bngl egfr_net_red.bngl egfr_path.bngl energy_example1.bngl fceri_ji.bngl test_continue.bngl
Possible precedence problem between ! and string eq at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/BNGOutput.pm line 703.
Possible precedence problem between ! and string eq at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/Component.pm line 349.
Possible precedence problem between ! and string eq at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/Molecule.pm line 275.
Possible precedence problem between ! and string eq at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/MoleculeType.pm line 491.
Possible precedence problem between ! and string eq at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/SpeciesGraph.pm line 2180.
Possible precedence problem between ! and string eq at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/SpeciesGraph.pm line 2188.
BioNetGen version 2.9.0
Reading from file CaOscillate_Func.bngl (level 0)
Read 17 parameters.
Read 4 molecule types.
Read 4 species.
Read 4 observable(s).
Read 8 reaction rule(s).
ACTION: generate_network( CaOscillate_Func )
Iteration   0:     4 species      0 rxns  0.00e+00 CPU s
Iteration   1:     4 species      8 rxns  0.00e+00 CPU s
Cumulative CPU time for each rule
Rule   1:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   2:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   3:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   4:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   5:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   6:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   7:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   8:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total   :     8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Wrote network in net format to ./CaOscillate_Func.net.
CPU TIME: generate_network 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./CaOscillate_Func.net.
Wrote network in net format to ./CaOscillate_Func.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/bin/run_network_i686-linux -o ./CaOscillate_Func -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Func.net ./CaOscillate_Func.net 0.1 200
[simulation PID is: 3012]
run_network 3.0
Read 17 parameters from ./CaOscillate_Func.net
Read 4 species from ./CaOscillate_Func.net
Read 4 group(s) from ./CaOscillate_Func.net
Read 4 function(s) from ./CaOscillate_Func.net
Read 8 reaction(s) from ./CaOscillate_Func.net
8 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
           time       n_steps n_deriv_calls
           0.00             0             0
           0.10           717           850
           0.20           741           879
           0.30           765           904
           0.40           790           930
           0.50           814           960
           0.60           838           985
           0.70           863          1015
           0.80           887          1040
           0.90           912          1067
           1.00           936          1099
           1.10           961          1129
           1.20           993          1171
           1.30          1025          1207
           1.40          1063          1260
           1.50          1105          1310
           1.60          1152          1368
           1.70          1208          1436
           1.80          1281          1523
           1.90          1354          1611
           2.00          1434          1704
           2.10          1509          1792
           2.20          1584          1871
           2.30          1638          1932
           2.40          1688          1984
           2.50          1741          2047
           2.60          1880          2222
           2.70          2351          2772
           2.80          2453          2892
           2.90          2501          2946
           3.00          2552          3007
           3.10          2616          3078
           3.20          2672          3143
           3.30          2730          3208
           3.40          2789          3271
           3.50          2847          3333
           3.60          2903          3395
           3.70          2956          3464
           3.80          3084          3620
           3.90          3240          3799
           4.00          3350          3920
           4.10          3415          3990
           4.20          3465          4046
           4.30          3516          4103
           4.40          3563          4151
           4.50          3599          4196
           4.60          3644          4249
           4.70          3690          4304
           4.80          3746          4371
           4.90          3802          4441
           5.00          3856          4498
           5.10          3895          4545
           5.20          3929          4585
           5.30          3961          4618
           5.40          3984          4642
           5.50          4007          4671
           5.60          4031          4697
           5.70          4054          4722
           5.80          4075          4750
           5.90          4095          4773
           6.00          4115          4795
           6.10          4136          4821
           6.20          4155          4841
           6.30          4168          4854
           6.40          4181          4872
           6.50          4194          4885
           6.60          4207          4898
           6.70          4220          4911
           6.80          4231          4927
           6.90          4239          4935
           7.00          4248          4945
           7.10          4257          4954
           7.20          4265          4963
           7.30          4274          4972
           7.40          4283          4982
           7.50          4292          4996
           7.60          4300          5004
           7.70          4309          5015
           7.80          4318          5024
           7.90          4329          5044
           8.00          4341          5059
           8.10          4352          5077
           8.20          4364          5090
           8.30          4377          5108
           8.40          4396          5135
           8.50          4423          5174
           8.60          4453          5207
           8.70          4492          5256
           8.80          4549          5327
           8.90          4658          5465
           9.00          4979          5847
           9.10          5283          6181
           9.20          5392          6300
           9.30          5431          6345
           9.40          5447          6363
           9.50          5460          6376
           9.60          5473          6389
           9.70          5485          6405
           9.80          5498          6418
           9.90          5511          6431
          10.00          5524          6445
          10.10          5537          6458
          10.20          5549          6475
          10.30          5562          6489
          10.40          5575          6502
          10.50          5588          6516
          10.60          5601          6534
          10.70          5613          6547
          10.80          5626          6562
          10.90          5639          6575
          11.00          5652          6590
          11.10          5664          6608
          11.20          5677          6621
          11.30          5690          6638
          11.40          5708          6656
          11.50          5725          6674
          11.60          5742          6696
          11.70          5759          6714
          11.80          5777          6733
          11.90          5794          6755
          12.00          5811          6773
          12.10          5829          6791
          12.20          5846          6809
          12.30          5863          6832
          12.40          5880          6851
          12.50          5898          6871
          12.60          5915          6894
          12.70          5934          6915
          12.80          5958          6940
          12.90          5981          6969
          13.00          6004          6994
          13.10          6031          7026
          13.20          6063          7065
          13.30          6095          7100
          13.40          6129          7145
          13.50          6172          7196
          13.60          6218          7252
          13.70          6272          7316
          13.80          6345          7398
          13.90          6417          7485
          14.00          6498          7583
          14.10          6573          7669
          14.20          6648          7748
          14.30          6704          7810
          14.40          6754          7867
          14.50          6806          7929
          14.60          6933          8086
          14.70          7384          8613
          14.80          7501          8742
          14.90          7554          8801
          15.00          7603          8864
          15.10          7665          8933
          15.20          7720          8999
          15.30          7776          9062
          15.40          7833          9124
          15.50          7889          9184
          15.60          7946          9241
          15.70          8003          9314
          15.80          8128          9466
          15.90          8283          9646
          16.00          8394          9768
          16.10          8459          9838
          16.20          8509          9895
          16.30          8559          9951
          16.40          8606         10003
          16.50          8642         10044
          16.60          8687         10097
          16.70          8732         10151
          16.80          8787         10212
          16.90          8843         10286
          17.00          8897         10344
          17.10          8937         10391
          17.20          8973         10433
          17.30          9007         10468
          17.40          9030         10495
          17.50          9054         10522
          17.60          9077         10547
          17.70          9101         10577
          17.80          9123         10602
          17.90          9142         10625
          18.00          9162         10651
          18.10          9183         10673
          18.20          9202         10697
          18.30          9212         10712
          18.40          9223         10723
          18.50          9233         10734
          18.60          9243         10744
          18.70          9253         10754
          18.80          9263         10764
          18.90          9274         10779
          19.00          9284         10789
          19.10          9294         10799
          19.20          9304         10809
          19.30          9315         10820
          19.40          9325         10830
          19.50          9335         10845
          19.60          9345         10855
          19.70          9355         10866
          19.80          9366         10877
          19.90          9376         10889
          20.00          9386         10908
Time course of concentrations written to file ./CaOscillate_Func.cdat.
Time course of groups written to file ./CaOscillate_Func.gdat.
Propagation took 1.00e-02 CPU seconds
Program times:  0.01 CPU s 0.00 clock s 
Updating species concentrations from ./CaOscillate_Func.cdat
CPU TIME: simulate 0.01 s.
Finished processing file CaOscillate_Func.bngl.
CPU TIME: total 0.02 s.
BioNetGen version 2.9.0
Reading from file CaOscillate_Sat.bngl (level 0)
Read 17 parameters.
Read 4 molecule types.
Read 4 species.
Read 4 observable(s).
Read 8 reaction rule(s).
ACTION: generate_network( CaOscillate_Sat )
Iteration   0:     4 species      0 rxns  0.00e+00 CPU s
Iteration   1:     4 species      8 rxns  0.00e+00 CPU s
Cumulative CPU time for each rule
Rule   1:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   2:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   3:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   4:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   5:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   6:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   7:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   8:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total   :     8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Wrote network in net format to ./CaOscillate_Sat.net.
CPU TIME: generate_network 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./CaOscillate_Sat.net.
Wrote network in net format to ./CaOscillate_Sat.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/bin/run_network_i686-linux -o ./CaOscillate_Sat -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Sat.net ./CaOscillate_Sat.net 0.1 200
[simulation PID is: 3014]
run_network 3.0
Read 17 parameters from ./CaOscillate_Sat.net
Read 4 species from ./CaOscillate_Sat.net
Read 4 group(s) from ./CaOscillate_Sat.net
Read 0 function(s) from ./CaOscillate_Sat.net
Read 8 reaction(s) from ./CaOscillate_Sat.net
8 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
           time       n_steps n_deriv_calls
           0.00             0             0
           0.10           719           851
           0.20           753           889
           0.30           788           924
           0.40           819           960
           0.50           842           984
           0.60           865          1008
           0.70           888          1036
           0.80           911          1060
           0.90           934          1091
           1.00           957          1116
           1.10           983          1146
           1.20          1014          1184
           1.30          1046          1218
           1.40          1079          1259
           1.50          1122          1310
           1.60          1169          1362
           1.70          1226          1428
           1.80          1296          1512
           1.90          1370          1605
           2.00          1450          1698
           2.10          1526          1787
           2.20          1601          1866
           2.30          1655          1927
           2.40          1705          1979
           2.50          1759          2043
           2.60          1897          2217
           2.70          2371          2794
           2.80          2470          2900
           2.90          2528          2962
           3.00          2575          3020
           3.10          2628          3083
           3.20          2680          3143
           3.30          2732          3204
           3.40          2784          3261
           3.50          2836          3315
           3.60          2888          3373
           3.70          2941          3438
           3.80          3067          3595
           3.90          3224          3777
           4.00          3337          3901
           4.10          3402          3971
           4.20          3456          4029
           4.30          3510          4087
           4.40          3558          4140
           4.50          3594          4180
           4.60          3640          4236
           4.70          3688          4292
           4.80          3746          4359
           4.90          3805          4430
           5.00          3862          4493
           5.10          3903          4540
           5.20          3941          4580
           5.30          3975          4619
           5.40          4000          4645
           5.50          4025          4675
           5.60          4051          4705
           5.70          4076          4735
           5.80          4099          4760
           5.90          4119          4782
           6.00          4140          4808
           6.10          4162          4831
           6.20          4181          4855
           6.30          4192          4871
           6.40          4204          4883
           6.50          4216          4896
           6.60          4228          4908
           6.70          4240          4920
           6.80          4252          4936
           6.90          4264          4948
           7.00          4276          4960
           7.10          4288          4972
           7.20          4299          4983
           7.30          4311          4999
           7.40          4323          5011
           7.50          4335          5023
           7.60          4347          5035
           7.70          4359          5047
           7.80          4371          5063
           7.90          4383          5075
           8.00          4395          5087
           8.10          4407          5099
           8.20          4419          5113
           8.30          4434          5143
           8.40          4450          5161
           8.50          4471          5189
           8.60          4498          5230
           8.70          4533          5272
           8.80          4592          5345
           8.90          4696          5473
           9.00          5025          5862
           9.10          5314          6183
           9.20          5422          6298
           9.30          5462          6344
           9.40          5475          6364
           9.50          5485          6378
           9.60          5494          6387
           9.70          5503          6402
           9.80          5513          6412
           9.90          5522          6423
          10.00          5532          6433
          10.10          5541          6444
          10.20          5551          6454
          10.30          5562          6471
          10.40          5575          6485
          10.50          5588          6498
          10.60          5600          6511
          10.70          5613          6525
          10.80          5626          6544
          10.90          5638          6558
          11.00          5651          6571
          11.10          5664          6586
          11.20          5677          6605
          11.30          5691          6621
          11.40          5708          6639
          11.50          5725          6661
          11.60          5742          6678
          11.70          5760          6697
          11.80          5777          6715
          11.90          5794          6737
          12.00          5811          6755
          12.10          5828          6773
          12.20          5845          6795
          12.30          5862          6813
          12.40          5880          6833
          12.50          5897          6852
          12.60          5914          6875
          12.70          5934          6897
          12.80          5957          6921
          12.90          5980          6950
          13.00          6003          6975
          13.10          6031          7008
          13.20          6063          7047
          13.30          6094          7086
          13.40          6128          7126
          13.50          6171          7177
          13.60          6218          7234
          13.70          6273          7301
          13.80          6345          7381
          13.90          6417          7472
          14.00          6501          7568
          14.10          6578          7655
          14.20          6655          7740
          14.30          6708          7800
          14.40          6759          7858
          14.50          6813          7917
          14.60          6940          8079
          14.70          7388          8611
          14.80          7506          8741
          14.90          7559          8800
          15.00          7608          8861
          15.10          7668          8930
          15.20          7728          8997
          15.30          7788          9063
          15.40          7848          9127
          15.50          7908          9191
          15.60          7965          9253
          15.70          8017          9318
          15.80          8141          9471
          15.90          8281          9636
          16.00          8398          9764
          16.10          8466          9837
          16.20          8522          9897
          16.30          8578          9957
          16.40          8626         10010
          16.50          8664         10052
          16.60          8708         10105
          16.70          8758         10161
          16.80          8816         10230
          16.90          8876         10295
          17.00          8934         10360
          17.10          8976         10408
          17.20          9014         10452
          17.30          9048         10487
          17.40          9073         10516
          17.50          9099         10543
          17.60          9124         10576
          17.70          9149         10602
          17.80          9172         10627
          17.90          9192         10653
          18.00          9213         10675
          18.10          9234         10697
          18.20          9253         10721
          18.30          9265         10738
          18.40          9275         10748
          18.50          9285         10759
          18.60          9295         10769
          18.70          9305         10783
          18.80          9315         10793
          18.90          9325         10803
          19.00          9335         10813
          19.10          9345         10823
          19.20          9354         10832
          19.30          9364         10846
          19.40          9374         10856
          19.50          9384         10868
          19.60          9394         10878
          19.70          9404         10889
          19.80          9414         10901
          19.90          9424         10919
          20.00          9434         10929
Time course of concentrations written to file ./CaOscillate_Sat.cdat.
Time course of groups written to file ./CaOscillate_Sat.gdat.
Propagation took 1.00e-02 CPU seconds
Program times:  0.01 CPU s 0.00 clock s 
Updating species concentrations from ./CaOscillate_Sat.cdat
CPU TIME: simulate 0.01 s.
Finished processing file CaOscillate_Sat.bngl.
CPU TIME: total 0.02 s.
BioNetGen version 2.9.0
Reading from file catalysis.bngl (level 0)
CPU TIME: version 0.00 s.
Warning: Parameter Gf_S_kinase is set to a negative value: -41.5
Warning: Parameter Gf_S_pptase is set to a negative value: -41.5
Warning: Parameter Ea0_S_kinase is set to a negative value: -7.7
Warning: Parameter Ea0_S_pptase is set to a negative value: -7.7
Warning: Parameter Ea0_cat_kinase is set to a negative value: -11.9
Read 17 parameters.
Read 1 compartments.
Read 5 molecule types.
Read 5 species.
Read 4 reaction rule(s).
Read 4 energy patterns(s).
Read 6 observable(s).
ACTION: generate_network( catalysis )
Iteration   0:     5 species      0 rxns  0.00e+00 CPU s
Iteration   1:     7 species      2 rxns  0.00e+00 CPU s
Iteration   2:     9 species      6 rxns  1.00e-02 CPU s
Iteration   3:    10 species     10 rxns  0.00e+00 CPU s
Iteration   4:    10 species     12 rxns  0.00e+00 CPU s
Cumulative CPU time for each rule
Rule   1:     4 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   2:     4 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   3:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   4:     2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Total   :    12 reactions 1.00e-02 CPU s 8.33e-04 CPU s/rxn
Wrote network in net format to ./catalysis.net.
CPU TIME: generate_network 0.01 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./catalysis.net.
Wrote network in net format to ./catalysis.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/bin/run_network_i686-linux -o ./catalysis -p cvode -a 0.001 -r 1e-07 --cdat 1 --fdat 0 -g ./catalysis.net ./catalysis.net 30 120
[simulation PID is: 3016]
run_network 3.0
Read 30 parameters from ./catalysis.net
@C::$ATP() is a fixed (boundaryCondition) variable
@C::$ADP() is a fixed (boundaryCondition) variable
Read 10 species from ./catalysis.net
Read 6 group(s) from ./catalysis.net
Read 0 function(s) from ./catalysis.net
Read 12 reaction(s) from ./catalysis.net
12 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./catalysis.cdat.
Time course of groups written to file ./catalysis.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Updating species concentrations from ./catalysis.cdat
CPU TIME: simulate 0.00 s.
Finished processing file catalysis.bngl.
CPU TIME: total 0.02 s.
BioNetGen version 2.9.0
Reading from file egfr_net.bngl (level 0)
Read 48 parameters.
Read 5 molecule types.
Read 6 species.
Read 23 reaction rule(s).
Read 15 observable(s).
ACTION: generate_network( egfr_net )
Iteration   0:     6 species      0 rxns  0.00e+00 CPU s
Iteration   1:     7 species      3 rxns  1.00e-02 CPU s
Iteration   2:     8 species      5 rxns  0.00e+00 CPU s
Iteration   3:    10 species      8 rxns  0.00e+00 CPU s
Iteration   4:    19 species     21 rxns  2.00e-02 CPU s
Iteration   5:    37 species     76 rxns  5.00e-02 CPU s
Iteration   6:    69 species    213 rxns  1.40e-01 CPU s
Iteration   7:   131 species    494 rxns  3.00e-01 CPU s
Iteration   8:   295 species   1260 rxns  9.50e-01 CPU s
Iteration   9:   356 species   3088 rxns  2.52e+00 CPU s
Iteration  10:   356 species   3749 rxns  1.16e+00 CPU s
Cumulative CPU time for each rule
Rule   1:    48 reactions 5.00e-02 CPU s 1.04e-03 CPU s/rxn
Rule   2:   600 reactions 1.28e+00 CPU s 2.13e-03 CPU s/rxn
Rule   3:   144 reactions 1.30e-01 CPU s 9.03e-04 CPU s/rxn
Rule   4:    96 reactions 1.00e-01 CPU s 1.04e-03 CPU s/rxn
Rule   5:   156 reactions 1.30e-01 CPU s 8.33e-04 CPU s/rxn
Rule   6:   104 reactions 8.00e-02 CPU s 7.69e-04 CPU s/rxn
Rule   7:    96 reactions 1.10e-01 CPU s 1.15e-03 CPU s/rxn
Rule   8:   104 reactions 1.10e-01 CPU s 1.06e-03 CPU s/rxn
Rule   9:   312 reactions 3.60e-01 CPU s 1.15e-03 CPU s/rxn
Rule  10:   312 reactions 3.70e-01 CPU s 1.19e-03 CPU s/rxn
Rule  11:   312 reactions 3.80e-01 CPU s 1.22e-03 CPU s/rxn
Rule  12:   208 reactions 2.30e-01 CPU s 1.11e-03 CPU s/rxn
Rule  13:   208 reactions 2.40e-01 CPU s 1.15e-03 CPU s/rxn
Rule  14:   208 reactions 2.90e-01 CPU s 1.39e-03 CPU s/rxn
Rule  15:   208 reactions 3.20e-01 CPU s 1.54e-03 CPU s/rxn
Rule  16:   208 reactions 2.70e-01 CPU s 1.30e-03 CPU s/rxn
Rule  17:   208 reactions 3.10e-01 CPU s 1.49e-03 CPU s/rxn
Rule  18:   208 reactions 2.70e-01 CPU s 1.30e-03 CPU s/rxn
Rule  19:     2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn
Rule  20:     2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule  21:     1 reactions 3.00e-02 CPU s 3.00e-02 CPU s/rxn
Rule  22:     2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn
Rule  23:     2 reactions 2.00e-02 CPU s 1.00e-02 CPU s/rxn
Total   :  3749 reactions 5.15e+00 CPU s 1.37e-03 CPU s/rxn
Wrote network in net format to ./egfr_net.net.
CPU TIME: generate_network 5.23 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_net.net.
Wrote network in net format to ./egfr_net.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/bin/run_network_i686-linux -o ./egfr_net -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net.net ./egfr_net.net 0.8 50
[simulation PID is: 3018]
run_network 3.0
Read 48 parameters from ./egfr_net.net
Read 356 species from ./egfr_net.net
Read 15 group(s) from ./egfr_net.net
Read 0 function(s) from ./egfr_net.net
Read 3749 reaction(s) from ./egfr_net.net
3749 reaction(s) have nonzero rate
Initialization took 0.02 CPU seconds
Propagating with cvode using GMRES
Time course of concentrations written to file ./egfr_net.cdat.
Time course of groups written to file ./egfr_net.gdat.
Propagation took 4.00e-02 CPU seconds
Program times:  0.06 CPU s 0.00 clock s 
Updating species concentrations from ./egfr_net.cdat
CPU TIME: simulate 0.15 s.
Finished processing file egfr_net.bngl.
CPU TIME: total 5.42 s.
BioNetGen version 2.9.0
Reading from file egfr_net_red.bngl (level 0)
Read 48 parameters.
Read 7 molecule types.
Read 7 species.
Read 14 observable(s).
Read 26 reaction rule(s).
ACTION: generate_network( egfr_net_red )
Iteration   0:     7 species      0 rxns  0.00e+00 CPU s
Iteration   1:    11 species      4 rxns  1.00e-02 CPU s
Iteration   2:    13 species     10 rxns  1.00e-02 CPU s
Iteration   3:    15 species     14 rxns  0.00e+00 CPU s
Iteration   4:    20 species     21 rxns  1.00e-02 CPU s
Iteration   5:    26 species     39 rxns  1.00e-02 CPU s
Iteration   6:    33 species     62 rxns  2.00e-02 CPU s
Iteration   7:    38 species     90 rxns  2.00e-02 CPU s
Iteration   8:    40 species    115 rxns  2.00e-02 CPU s
Iteration   9:    40 species    123 rxns  1.00e-02 CPU s
Cumulative CPU time for each rule
Rule   1:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   2:     8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn
Rule   3:    12 reactions 1.00e-02 CPU s 8.33e-04 CPU s/rxn
Rule   4:     8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn
Rule   5:    12 reactions 1.00e-02 CPU s 8.33e-04 CPU s/rxn
Rule   6:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   7:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   8:     3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   9:     3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  10:     1 reactions 1.00e-02 CPU s 1.00e-02 CPU s/rxn
Rule  11:     3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  12:     6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  13:     6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule  14:     6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  15:     6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  16:     6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule  17:     6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  18:     6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  19:     6 reactions 3.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule  20:     6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  21:     6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  22:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  23:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  24:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  25:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  26:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total   :   123 reactions 1.00e-01 CPU s 8.13e-04 CPU s/rxn
Wrote network in net format to ./egfr_net_red.net.
CPU TIME: generate_network 0.11 s.
Set concentration of species egf(r) to value 0
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net.
Wrote network in net format to ./egfr_net_red.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/bin/run_network_i686-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b -c --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 10000 10
[simulation PID is: 3020]
run_network 3.0
Read 48 parameters from ./egfr_net_red.net
Read 40 species from ./egfr_net_red.net
Read 14 group(s) from ./egfr_net_red.net
Read 3 function(s) from ./egfr_net_red.net
Read 123 reaction(s) from ./egfr_net_red.net
123 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using GMRES
Time course of concentrations written to file ./egfr_net_red.cdat.
Time course of groups written to file ./egfr_net_red.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Simulation reached steady state by t_end=100000
Updating species concentrations from ./egfr_net_red.cdat
CPU TIME: simulate 0.02 s.
Set concentration of species egf(r) to value egf_tot
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net.
Wrote network in net format to ./egfr_net_red.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/bin/run_network_i686-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 1 120
[simulation PID is: 3022]
run_network 3.0
Read 48 parameters from ./egfr_net_red.net
Read 40 species from ./egfr_net_red.net
Read 14 group(s) from ./egfr_net_red.net
Read 3 function(s) from ./egfr_net_red.net
Read 123 reaction(s) from ./egfr_net_red.net
123 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using GMRES
Time course of concentrations written to file ./egfr_net_red.cdat.
Time course of groups written to file ./egfr_net_red.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Updating species concentrations from ./egfr_net_red.cdat
CPU TIME: simulate 0.02 s.
Finished processing file egfr_net_red.bngl.
CPU TIME: total 0.19 s.
BioNetGen version 2.9.0
Reading from file egfr_path.bngl (level 0)
Read 48 parameters.
Read 18 species.
Read 19 reaction rule(s).
Read 11 observable(s).
ACTION: generate_network( egfr_path )
Iteration   0:    18 species      0 rxns  0.00e+00 CPU s
Iteration   1:    18 species     37 rxns  1.00e-02 CPU s
Cumulative CPU time for each rule
Rule   1:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   2:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   3:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   4:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   5:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   6:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   7:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   8:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   9:     2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule  10:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  11:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  12:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  13:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  14:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  15:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  16:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  17:     1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  18:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  19:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total   :    37 reactions 1.00e-02 CPU s 2.70e-04 CPU s/rxn
Wrote network in net format to ./egfr_path.net.
CPU TIME: generate_network 0.02 s.
Set concentration of species EGF() to value 0
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_path.net.
Wrote network in net format to ./egfr_path.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/bin/run_network_i686-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 -c --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 10000 10
[simulation PID is: 3024]
run_network 3.0
Read 48 parameters from ./egfr_path.net
Read 18 species from ./egfr_path.net
Read 11 group(s) from ./egfr_path.net
Read 0 function(s) from ./egfr_path.net
Read 37 reaction(s) from ./egfr_path.net
37 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./egfr_path.cdat.
Time course of groups written to file ./egfr_path.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Simulation reached steady state by t_end=100000
Updating species concentrations from ./egfr_path.cdat
CPU TIME: simulate 0.01 s.
Set concentration of species EGF() to value EGF_tot
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_path.net.
Wrote network in net format to ./egfr_path.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/bin/run_network_i686-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 1 120
[simulation PID is: 3026]
run_network 3.0
Read 48 parameters from ./egfr_path.net
Read 18 species from ./egfr_path.net
Read 11 group(s) from ./egfr_path.net
Read 0 function(s) from ./egfr_path.net
Read 37 reaction(s) from ./egfr_path.net
37 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./egfr_path.cdat.
Time course of groups written to file ./egfr_path.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Updating species concentrations from ./egfr_path.cdat
CPU TIME: simulate 0.01 s.
Finished processing file egfr_path.bngl.
CPU TIME: total 0.06 s.
BioNetGen version 2.9.0
Reading from file energy_example1.bngl (level 0)
CPU TIME: version 0.00 s.
Warning: Parameter Gf_SA is set to a negative value: -47.5
Warning: Parameter Gf_SB is set to a negative value: -47.5
Warning: Parameter Gf_SC is set to a negative value: -47.5
Warning: Parameter Gf_SBC is set to a negative value: -5.9
Warning: Parameter Gf_SABC is set to a negative value: -1.8
Warning: Parameter Ea0_SA is set to a negative value: -17.8
Warning: Parameter Ea0_SB is set to a negative value: -17.8
Warning: Parameter Ea0_SC is set to a negative value: -17.8
Read 19 parameters.
Read 1 compartments.
Read 4 molecule types.
Read 4 species.
Read 6 energy patterns(s).
Read 11 observable(s).
Read 3 reaction rule(s).
ACTION: generate_network( energy_example1 )
Iteration   0:     4 species      0 rxns  0.00e+00 CPU s
Iteration   1:     7 species      3 rxns  0.00e+00 CPU s
Iteration   2:    10 species     12 rxns  1.00e-02 CPU s
Iteration   3:    11 species     21 rxns  1.00e-02 CPU s
Iteration   4:    11 species     24 rxns  0.00e+00 CPU s
Cumulative CPU time for each rule
Rule   1:     8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn
Rule   2:     8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn
Rule   3:     8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total   :    24 reactions 2.00e-02 CPU s 8.33e-04 CPU s/rxn
Wrote network in net format to ./energy_example1.net.
CPU TIME: generate_network 0.03 s.
Wrote SBML to ./energy_example1_sbml.xml.
CPU TIME: writeSBML 0.00 s.
Finished processing file energy_example1.bngl.
CPU TIME: total 0.05 s.
BioNetGen version 2.9.0
Reading from file fceri_ji.bngl (level 0)
Read 26 parameters.
Read 4 species.
Adding pY as allowed state of component b of molecule Rec
Adding pY as allowed state of component g of molecule Rec
Adding pY as allowed state of component l of molecule Syk
Adding pY as allowed state of component a of molecule Syk
Read 19 reaction rule(s).
Read 10 observable(s).
ACTION: generate_network( fceri_ji )
Iteration   0:     4 species      0 rxns  0.00e+00 CPU s
Iteration   1:     6 species      2 rxns  0.00e+00 CPU s
Iteration   2:     9 species      8 rxns  1.00e-02 CPU s
Iteration   3:    12 species     20 rxns  1.00e-02 CPU s
Iteration   4:    22 species     36 rxns  2.00e-02 CPU s
Iteration   5:    43 species    100 rxns  4.00e-02 CPU s
Iteration   6:    78 species    255 rxns  1.20e-01 CPU s
Iteration   7:   139 species    586 rxns  2.50e-01 CPU s
Iteration   8:   199 species   1190 rxns  5.20e-01 CPU s
Iteration   9:   303 species   1841 rxns  6.40e-01 CPU s
Iteration  10:   354 species   3143 rxns  1.12e+00 CPU s
Iteration  11:   354 species   3680 rxns  4.80e-01 CPU s
Cumulative CPU time for each rule
Rule   1:    48 reactions 7.00e-02 CPU s 1.46e-03 CPU s/rxn
Rule   2:  1152 reactions 8.80e-01 CPU s 7.64e-04 CPU s/rxn
Rule   3:   312 reactions 2.80e-01 CPU s 8.97e-04 CPU s/rxn
Rule   4:    36 reactions 5.00e-02 CPU s 1.39e-03 CPU s/rxn
Rule   5:    24 reactions 5.00e-02 CPU s 2.08e-03 CPU s/rxn
Rule   6:   312 reactions 2.60e-01 CPU s 8.33e-04 CPU s/rxn
Rule   7:    36 reactions 6.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule   8:    24 reactions 4.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule   9:   832 reactions 6.60e-01 CPU s 7.93e-04 CPU s/rxn
Rule  10:    48 reactions 8.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule  11:    48 reactions 8.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule  12:    64 reactions 1.10e-01 CPU s 1.72e-03 CPU s/rxn
Rule  13:    64 reactions 1.10e-01 CPU s 1.72e-03 CPU s/rxn
Rule  14:   156 reactions 1.00e-01 CPU s 6.41e-04 CPU s/rxn
Rule  15:   104 reactions 6.00e-02 CPU s 5.77e-04 CPU s/rxn
Rule  16:   208 reactions 1.60e-01 CPU s 7.69e-04 CPU s/rxn
Rule  17:   208 reactions 1.60e-01 CPU s 7.69e-04 CPU s/rxn
Rule  18:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule  19:     2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total   :  3680 reactions 3.21e+00 CPU s 8.72e-04 CPU s/rxn
Wrote network in net format to ./fceri_ji.net.
CPU TIME: generate_network 3.29 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./fceri_ji.net.
Wrote network in net format to ./fceri_ji.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/bin/run_network_i686-linux -o ./fceri_ji -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./fceri_ji.net ./fceri_ji.net 60 10
[simulation PID is: 3028]
run_network 3.0
Read 26 parameters from ./fceri_ji.net
Read 354 species from ./fceri_ji.net
Read 10 group(s) from ./fceri_ji.net
Read 0 function(s) from ./fceri_ji.net
Read 3680 reaction(s) from ./fceri_ji.net
Removed 600 reactions with zero rate
3080 reaction(s) have nonzero rate
Initialization took 0.01 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./fceri_ji.cdat.
Time course of groups written to file ./fceri_ji.gdat.
Propagation took 4.20e-01 CPU seconds
Program times:  0.43 CPU s 1.00 clock s 
Updating species concentrations from ./fceri_ji.cdat
CPU TIME: simulate 0.52 s.
Finished processing file fceri_ji.bngl.
CPU TIME: total 3.84 s.
BioNetGen version 2.9.0
Reading from file test_continue.bngl (level 0)
Read 19 parameters.
Read 5 molecule types.
Read 4 species.
Read 6 observable(s).
Read 6 reaction rule(s).
ACTION: generate_network( test_continue )
Iteration   0:     4 species      0 rxns  0.00e+00 CPU s
Iteration   1:     6 species      2 rxns  0.00e+00 CPU s
Iteration   2:     7 species      5 rxns  1.00e-02 CPU s
Iteration   3:     8 species      7 rxns  0.00e+00 CPU s
Iteration   4:    12 species     12 rxns  0.00e+00 CPU s
Iteration   5:    17 species     30 rxns  2.00e-02 CPU s
Iteration   6:    22 species     59 rxns  2.00e-02 CPU s
Iteration   7:    22 species     76 rxns  2.00e-02 CPU s
Cumulative CPU time for each rule
Rule   1:     8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   2:    20 reactions 3.00e-02 CPU s 1.50e-03 CPU s/rxn
Rule   3:     4 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   4:     6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule   5:    24 reactions 3.00e-02 CPU s 1.25e-03 CPU s/rxn
Rule   6:    14 reactions 1.00e-02 CPU s 7.14e-04 CPU s/rxn
Total   :    76 reactions 7.00e-02 CPU s 9.21e-04 CPU s/rxn
Wrote network in net format to ./test_continue.net.
CPU TIME: generate_network 0.07 s.
Set concentration of species EGF(R) to value EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./test_continue.net.
Wrote network in net format to ./test_continue.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/bin/run_network_i686-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./test_continue.net ./test_continue.net 2.5 40
[simulation PID is: 3030]
run_network 3.0
Read 19 parameters from ./test_continue.net
Read 22 species from ./test_continue.net
Read 6 group(s) from ./test_continue.net
Read 0 function(s) from ./test_continue.net
Read 76 reaction(s) from ./test_continue.net
76 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./test_continue.cdat.
Time course of groups written to file ./test_continue.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Updating species concentrations from ./test_continue.cdat
CPU TIME: simulate 0.01 s.
Set concentration of species EGF(R) to value 10*EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./test_continue.net.
Wrote network in net format to ./test_continue.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/bin/run_network_i686-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40
[simulation PID is: 3032]
run_network 3.0
Read 20 parameters from ./test_continue.net
Read 22 species from ./test_continue.net
Read 6 group(s) from ./test_continue.net
Read 0 function(s) from ./test_continue.net
Read 76 reaction(s) from ./test_continue.net
76 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./test_continue.cdat.
Time course of groups written to file ./test_continue.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Updating species concentrations from ./test_continue.cdat
CPU TIME: simulate 0.01 s.
Set concentration of species EGF(R) to value 0.1*EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./test_continue.net.
Wrote network in net format to ./test_continue.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/bin/run_network_i686-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40
[simulation PID is: 3034]
run_network 3.0
Read 21 parameters from ./test_continue.net
Read 22 species from ./test_continue.net
Read 6 group(s) from ./test_continue.net
Read 0 function(s) from ./test_continue.net
Read 76 reaction(s) from ./test_continue.net
76 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./test_continue.cdat.
Time course of groups written to file ./test_continue.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Updating species concentrations from ./test_continue.cdat
CPU TIME: simulate 0.02 s.
Reset species concentrations to "DEFAULT" saved values.
CPU TIME: resetConcentrations 0.00 s.
Set concentration of species EGF(R) to value EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"ssa" )
Network simulation using ssa
Wrote network in net format to ./test_continue_ssa.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/bin/run_network_i686-linux -o ./test_continue_ssa -p ssa -h 1466428383 --cdat 1 --fdat 0 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40
[simulation PID is: 3036]
run_network 3.0
Read 21 parameters from ./test_continue_ssa.net
Read 22 species from ./test_continue_ssa.net
Read 6 group(s) from ./test_continue_ssa.net
Read 0 function(s) from ./test_continue_ssa.net
Read 76 reaction(s) from ./test_continue_ssa.net
76 reaction(s) have nonzero rate
rxn_rate_update_interval=1
Average number of update rxns is 14.17
Initialization took 0.00 CPU seconds
Stochastic simulation using direct Gillespie algorithm
TOTAL STEPS: 72058           
Time course of concentrations written to file ./test_continue_ssa.cdat.
Time course of groups written to file ./test_continue_ssa.gdat.
Propagation took 0.00e+00 CPU seconds
Program times:  0.00 CPU s 0.00 clock s 
Updating species concentrations from ./test_continue_ssa.cdat
CPU TIME: simulate 0.01 s.
Set concentration of species EGF(R) to value 10*EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"ssa" )
Network simulation using ssa
WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net.
Wrote network in net format to ./test_continue_ssa.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/bin/run_network_i686-linux -o ./test_continue_ssa -p ssa -h 956936608 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40
[simulation PID is: 3038]
run_network 3.0
Read 22 parameters from ./test_continue_ssa.net
Read 22 species from ./test_continue_ssa.net
Read 6 group(s) from ./test_continue_ssa.net
Read 0 function(s) from ./test_continue_ssa.net
Read 76 reaction(s) from ./test_continue_ssa.net
76 reaction(s) have nonzero rate
rxn_rate_update_interval=1
Average number of update rxns is 14.17
Initialization took 0.00 CPU seconds
Stochastic simulation using direct Gillespie algorithm
TOTAL STEPS: 129437          
Time course of concentrations written to file ./test_continue_ssa.cdat.
Time course of groups written to file ./test_continue_ssa.gdat.
Propagation took 1.00e-02 CPU seconds
Program times:  0.01 CPU s 0.00 clock s 
Updating species concentrations from ./test_continue_ssa.cdat
CPU TIME: simulate 0.03 s.
Set concentration of species EGF(R) to value 0.1*EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"ssa" )
Network simulation using ssa
WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net.
Wrote network in net format to ./test_continue_ssa.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/bin/run_network_i686-linux -o ./test_continue_ssa -p ssa -h 95806942 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40
[simulation PID is: 3040]
run_network 3.0
Read 23 parameters from ./test_continue_ssa.net
Read 22 species from ./test_continue_ssa.net
Read 6 group(s) from ./test_continue_ssa.net
Read 0 function(s) from ./test_continue_ssa.net
Read 76 reaction(s) from ./test_continue_ssa.net
76 reaction(s) have nonzero rate
rxn_rate_update_interval=1
Average number of update rxns is 14.17
Initialization took 0.00 CPU seconds
Stochastic simulation using direct Gillespie algorithm
TOTAL STEPS: 107464          
Time course of concentrations written to file ./test_continue_ssa.cdat.
Time course of groups written to file ./test_continue_ssa.gdat.
Propagation took 1.00e-02 CPU seconds
Program times:  0.01 CPU s 0.00 clock s 
Updating species concentrations from ./test_continue_ssa.cdat
CPU TIME: simulate 0.02 s.
Finished processing file test_continue.bngl.
CPU TIME: total 0.19 s.
Tests finished.
+ echo 'Tests finished.'
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: bionetgen-2.9.0-11.fc44.i686
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.sXDirG
+ umask 022
+ cd /builddir/build/BUILD/bionetgen-2.9.0-build
+ cd bionetgen-2.9.0
+ DOCDIR=/builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/doc/bionetgen
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/doc/bionetgen
+ cp -pr /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/README.md /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/doc/bionetgen
+ cp -pr /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/CREDITS.txt /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/doc/bionetgen
+ cp -pr /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/CHANGES.txt /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/doc/bionetgen
+ cp -pr /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/bng2/VERSION /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/doc/bionetgen
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.gvwVhn
+ umask 022
+ cd /builddir/build/BUILD/bionetgen-2.9.0-build
+ cd bionetgen-2.9.0
+ LICENSEDIR=/builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/licenses/bionetgen
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/licenses/bionetgen
+ cp -pr /builddir/build/BUILD/bionetgen-2.9.0-build/bionetgen-2.9.0/bionetgen-BioNetGen-2.9.0/LICENSE /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT/usr/share/licenses/bionetgen
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bionetgen = 2.9.0-11.fc44 bionetgen(x86-32) = 2.9.0-11.fc44
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.32) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.38) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_ABI_DT_RELR) libc.so.6(GLIBC_ABI_GNU_TLS) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.29) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.26) libstdc++.so.6(GLIBCXX_3.4.29) libstdc++.so.6(GLIBCXX_3.4.30) libstdc++.so.6(GLIBCXX_3.4.32) libstdc++.so.6(GLIBCXX_3.4.9) rtld(GNU_HASH)
Processing files: bionetgen-perl-2.9.0-11.fc44.noarch
Provides: bionetgen-perl = 2.9.0-11.fc44 bundled(XML-TreePP) = 0.41 perl(Viz)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl perl(Carp) perl(Class::Struct) perl(Config) perl(Cwd) perl(Data::Dumper) perl(Exporter) perl(File::Basename) perl(File::Path) perl(File::Spec) perl(File::Spec::Win32) perl(FindBin) perl(Getopt::Long) perl(IO::Handle) perl(IO::Select) perl(IPC::Open3) perl(List::Util) perl(Math::Trig) perl(POSIX) perl(Scalar::Util) perl(Storable) perl(Symbol) perl(constant) perl(lib) perl(strict) perl(vars) perl(warnings) perl-libs
Processing files: bionetgen-debugsource-2.9.0-11.fc44.i686
Provides: bionetgen-debugsource = 2.9.0-11.fc44 bionetgen-debugsource(x86-32) = 2.9.0-11.fc44
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bionetgen-debuginfo-2.9.0-11.fc44.i686
Provides: bionetgen-debuginfo = 2.9.0-11.fc44 bionetgen-debuginfo(x86-32) = 2.9.0-11.fc44 debuginfo(build-id) = 52ad28e29fe3d91222546fd8e82f83a9f5a0dee8
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bionetgen-debugsource(x86-32) = 2.9.0-11.fc44
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/bionetgen-2.9.0-build/BUILDROOT
Wrote: /builddir/build/RPMS/bionetgen-2.9.0-11.fc44.i686.rpm
Wrote: /builddir/build/RPMS/bionetgen-debugsource-2.9.0-11.fc44.i686.rpm
Wrote: /builddir/build/RPMS/bionetgen-perl-2.9.0-11.fc44.noarch.rpm
Wrote: /builddir/build/RPMS/bionetgen-debuginfo-2.9.0-11.fc44.i686.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.mwG8uj
+ umask 022
+ cd /builddir/build/BUILD/bionetgen-2.9.0-build
+ test -d /builddir/build/BUILD/bionetgen-2.9.0-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/bionetgen-2.9.0-build
+ rm -rf /builddir/build/BUILD/bionetgen-2.9.0-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild bionetgen-2.9.0-11.fc44.src.rpm
Finish: build phase for bionetgen-2.9.0-11.fc44.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1766664604.194588/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/bionetgen-2.9.0-11.fc44.src.rpm) Config(child) 1 minutes 5 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "bionetgen",
            "epoch": null,
            "version": "2.9.0",
            "release": "11.fc44",
            "arch": "i686"
        },
        {
            "name": "bionetgen-perl",
            "epoch": null,
            "version": "2.9.0",
            "release": "11.fc44",
            "arch": "noarch"
        },
        {
            "name": "bionetgen-debugsource",
            "epoch": null,
            "version": "2.9.0",
            "release": "11.fc44",
            "arch": "i686"
        },
        {
            "name": "bionetgen-debuginfo",
            "epoch": null,
            "version": "2.9.0",
            "release": "11.fc44",
            "arch": "i686"
        },
        {
            "name": "bionetgen",
            "epoch": null,
            "version": "2.9.0",
            "release": "11.fc44",
            "arch": "src"
        }
    ]
}
RPMResults finished