Warning: Permanently added '98.92.79.40' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9950036-fedora-rawhide-i386 --chroot fedora-rawhide-i386


Version: 1.6
PID: 43882
Logging PID: 43884
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 9950036,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-i386',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'a1cb730061a4803ba7c67bfce959ae83b7d70e62',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/lagan',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'lagan',
 'package_version': '2.0-45',
 'project_dirname': 'mbp-gcc-16',
 'project_name': 'mbp-gcc-16',
 'project_owner': 'siddhesh',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/siddhesh/mbp-gcc-16/fedora-rawhide-i386/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'https://kojipkgs.fedoraproject.org/repos/f44-build-side-124978/latest/$basearch/',
            'id': 'https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch',
            'name': 'Additional repo https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch'}],
 'sandbox': 'siddhesh/mbp-gcc-16--siddhesh',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'siddhesh',
 'tags': [],
 'task_id': '9950036-fedora-rawhide-i386',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/lagan /var/lib/copr-rpmbuild/workspace/workdir-fe1lw_uh/lagan --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/lagan', '/var/lib/copr-rpmbuild/workspace/workdir-fe1lw_uh/lagan', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-fe1lw_uh/lagan'...

Running: git checkout a1cb730061a4803ba7c67bfce959ae83b7d70e62 --

cmd: ['git', 'checkout', 'a1cb730061a4803ba7c67bfce959ae83b7d70e62', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-fe1lw_uh/lagan
rc: 0
stdout: 
stderr: Note: switching to 'a1cb730061a4803ba7c67bfce959ae83b7d70e62'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at a1cb730 automatic import of lagan

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-fe1lw_uh/lagan
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading lagan20.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o lagan20.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/siddhesh/mbp-gcc-16/lagan/lagan20.tar.gz/md5/da0948fbd76c2c92ae587d3a5db510fa/lagan20.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100  575k  100  575k    0     0  34.3M      0 --:--:-- --:--:-- --:--:-- 35.1M
INFO: Reading stdout from command: md5sum lagan20.tar.gz

tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-fe1lw_uh/lagan/lagan.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-fe1lw_uh/lagan --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1766855907.055821 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.6 starting (python version = 3.13.7, NVR = mock-6.6-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-fe1lw_uh/lagan/lagan.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-fe1lw_uh/lagan --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1766855907.055821 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-fe1lw_uh/lagan/lagan.spec)  Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.6
INFO: Mock Version: 6.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1766855907.055821/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Tagging container image as mock-bootstrap-31e92d78-44bd-40ca-b5d3-d336cc8681cd
INFO: Checking that 0bb24a520e4fb35ee360513416141188019ec6d6a2f05845b283b6fe074aa183 image matches host's architecture
INFO: Copy content of container 0bb24a520e4fb35ee360513416141188019ec6d6a2f05845b283b6fe074aa183 to /var/lib/mock/fedora-rawhide-i686-bootstrap-1766855907.055821/root
INFO: mounting 0bb24a520e4fb35ee360513416141188019ec6d6a2f05845b283b6fe074aa183 with podman image mount
INFO: image 0bb24a520e4fb35ee360513416141188019ec6d6a2f05845b283b6fe074aa183 as /var/lib/containers/storage/overlay/90066b3cf6c647ba67a32618e5261a172a52d1aff076651340dc07cd3d1ba5c0/merged
INFO: umounting image 0bb24a520e4fb35ee360513416141188019ec6d6a2f05845b283b6fe074aa183 (/var/lib/containers/storage/overlay/90066b3cf6c647ba67a32618e5261a172a52d1aff076651340dc07cd3d1ba5c0/merged) with podman image umount
INFO: Removing image mock-bootstrap-31e92d78-44bd-40ca-b5d3-d336cc8681cd
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1766855907.055821/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-1.fc44.x86_64
  rpm-sequoia-1.10.0-1.fc44.x86_64
  dnf5-5.3.0.0-3.fc44.x86_64
  dnf5-plugins-5.3.0.0-3.fc44.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 Additional repo https_kojipkgs_fedorap 100% |  35.0 KiB/s |   3.5 KiB |  00m00s
 local                                  100% |  35.0 KiB/s |   3.5 KiB |  00m00s
 Copr repository                        100% |  15.4 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package                            Arch   Version                      Repository                                                                        Size
Installing group/module packages:
 bash                              i686   0:5.3.0-2.fc44               copr_base                                                                      8.6 MiB
 bzip2                             i686   0:1.0.8-21.fc44              copr_base                                                                     85.4 KiB
 coreutils                         i686   0:9.9-1.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   5.3 MiB
 cpio                              i686   0:2.15-6.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.1 MiB
 diffutils                         i686   0:3.12-3.fc44                copr_base                                                                      1.6 MiB
 fedora-release                    noarch 0:44-0.10                    https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   0.0   B
 findutils                         i686   1:4.10.0-6.fc44              copr_base                                                                      1.9 MiB
 gawk                              i686   0:5.3.2-2.fc44               copr_base                                                                      1.8 MiB
 glibc-minimal-langpack            i686   0:2.42.9000-17.fc44          copr_base                                                                      0.0   B
 grep                              i686   0:3.12-2.fc44                copr_base                                                                      1.0 MiB
 gzip                              i686   0:1.14-1.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 396.8 KiB
 info                              i686   0:7.2-7.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 360.3 KiB
 patch                             i686   0:2.8-3.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 233.7 KiB
 redhat-rpm-config                 noarch 0:343-19.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 183.6 KiB
 rpm-build                         i686   0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 267.4 KiB
 sed                               i686   0:4.9-6.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 860.4 KiB
 shadow-utils                      i686   2:4.18.0-7.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.9 MiB
 tar                               i686   2:1.35-6.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.0 MiB
 unzip                             i686   0:6.0-68.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 395.8 KiB
 util-linux                        i686   0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.3 MiB
 which                             i686   0:2.23-3.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  78.1 KiB
 xz                                i686   1:5.8.1-4.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.3 MiB
Installing dependencies:
 R-srpm-macros                     noarch 0:1.3.0-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.2 KiB
 add-determinism                   i686   0:0.7.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.2 MiB
 alternatives                      i686   0:1.33-3.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  61.4 KiB
 ansible-srpm-macros               noarch 0:1-18.1.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  35.7 KiB
 audit-libs                        i686   0:4.1.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 392.5 KiB
 binutils                          i686   0:2.45.50-12.fc44            copr_base                                                                     27.4 MiB
 build-reproducibility-srpm-macros noarch 0:0.7.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.2 KiB
 bzip2-libs                        i686   0:1.0.8-21.fc44              copr_base                                                                     79.7 KiB
 ca-certificates                   noarch 0:2025.2.80_v9.0.304-2.fc44  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.7 MiB
 cmake-srpm-macros                 noarch 0:3.31.10-3.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 524.0   B
 coreutils-common                  i686   0:9.9-1.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  11.2 MiB
 crypto-policies                   noarch 0:20251128-1.git19878fe.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 132.6 KiB
 curl                              i686   0:8.18.0~rc2-1.fc44          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 478.8 KiB
 cyrus-sasl-lib                    i686   0:2.1.28-33.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.5 MiB
 debugedit                         i686   0:5.2-3.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 218.6 KiB
 dwz                               i686   0:0.16-2.fc44                copr_base                                                                    308.9 KiB
 ed                                i686   0:1.22.3-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 147.7 KiB
 efi-srpm-macros                   noarch 0:6-5.fc44                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  40.2 KiB
 elfutils                          i686   0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.6 MiB
 elfutils-debuginfod-client        i686   0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  74.3 KiB
 elfutils-default-yama-scope       noarch 0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.8 KiB
 elfutils-libelf                   i686   0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.1 MiB
 elfutils-libs                     i686   0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 733.9 KiB
 fedora-gpg-keys                   noarch 0:44-0.1                     https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 131.2 KiB
 fedora-release-common             noarch 0:44-0.10                    https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  20.6 KiB
 fedora-release-identity-basic     noarch 0:44-0.10                    https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 664.0   B
 fedora-repos                      noarch 0:44-0.1                     https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   4.9 KiB
 fedora-repos-rawhide              noarch 0:44-0.1                     https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.2 KiB
 file                              i686   0:5.46-8.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  95.2 KiB
 file-libs                         i686   0:5.46-8.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  11.9 MiB
 filesystem                        i686   0:3.18-51.fc44               copr_base                                                                     94.0   B
 filesystem-srpm-macros            noarch 0:3.18-51.fc44               copr_base                                                                     38.2 KiB
 fonts-srpm-macros                 noarch 1:5.0.0-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  55.8 KiB
 forge-srpm-macros                 noarch 0:0.4.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  38.9 KiB
 fpc-srpm-macros                   noarch 0:1.3-15.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 144.0   B
 gap-srpm-macros                   noarch 0:2-1.fc44                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.1 KiB
 gdb-minimal                       i686   0:16.3-6.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  13.8 MiB
 gdbm-libs                         i686   1:1.23-10.fc44               copr_base                                                                    132.2 KiB
 ghc-srpm-macros                   noarch 0:1.9.2-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 779.0   B
 glibc                             i686   0:2.42.9000-17.fc44          copr_base                                                                      5.7 MiB
 glibc-common                      i686   0:2.42.9000-17.fc44          copr_base                                                                      1.0 MiB
 glibc-gconv-extra                 i686   0:2.42.9000-17.fc44          copr_base                                                                      6.7 MiB
 gmp                               i686   1:6.3.0-4.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 734.2 KiB
 gnat-srpm-macros                  noarch 0:6-8.fc43                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.0 KiB
 gnulib-l10n                       noarch 0:20241231-1.fc44            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 655.0 KiB
 gnupg2                            i686   0:2.4.8-4.fc44               copr_base                                                                      6.6 MiB
 gnupg2-dirmngr                    i686   0:2.4.8-4.fc44               copr_base                                                                    657.7 KiB
 gnupg2-gpg-agent                  i686   0:2.4.8-4.fc44               copr_base                                                                    692.3 KiB
 gnupg2-gpgconf                    i686   0:2.4.8-4.fc44               copr_base                                                                    253.7 KiB
 gnupg2-keyboxd                    i686   0:2.4.8-4.fc44               copr_base                                                                    199.9 KiB
 gnupg2-verify                     i686   0:2.4.8-4.fc44               copr_base                                                                    367.2 KiB
 gnutls                            i686   0:3.8.11-8.fc44              copr_base                                                                      3.9 MiB
 go-srpm-macros                    noarch 0:3.8.0-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  61.9 KiB
 gpgverify                         noarch 0:2.2-3.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   8.7 KiB
 ima-evm-utils-libs                i686   0:1.6.2-7.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  51.9 KiB
 jansson                           i686   0:2.14-3.fc44                copr_base                                                                     88.2 KiB
 java-srpm-macros                  noarch 0:1-7.fc43                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 870.0   B
 json-c                            i686   0:0.18-7.fc44                copr_base                                                                     85.8 KiB
 kernel-srpm-macros                noarch 0:1.0-27.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 KiB
 keyutils-libs                     i686   0:1.6.3-6.fc44               copr_base                                                                     53.4 KiB
 krb5-libs                         i686   0:1.21.3-10.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.3 MiB
 libacl                            i686   0:2.3.2-4.fc44               copr_base                                                                     35.1 KiB
 libarchive                        i686   0:3.8.4-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.0 MiB
 libassuan                         i686   0:2.5.7-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 167.0 KiB
 libatomic                         i686   0:16.0.0-0.3.fc44            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  27.5 KiB
 libattr                           i686   0:2.5.2-6.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  23.6 KiB
 libblkid                          i686   0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 285.3 KiB
 libbrotli                         i686   0:1.2.0-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 851.1 KiB
 libcap                            i686   0:2.77-1.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 193.8 KiB
 libcap-ng                         i686   0:0.8.5-8.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  67.4 KiB
 libcom_err                        i686   0:1.47.3-3.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  62.3 KiB
 libcurl                           i686   0:8.18.0~rc2-1.fc44          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.0 MiB
 libeconf                          i686   0:0.7.9-2.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  64.1 KiB
 libevent                          i686   0:2.1.12-16.fc43             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 939.3 KiB
 libfdisk                          i686   0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 423.7 KiB
 libffi                            i686   0:3.5.2-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  78.9 KiB
 libfsverity                       i686   0:1.6-3.fc44                 copr_base                                                                     27.7 KiB
 libgcc                            i686   0:16.0.0-0.3.fc44            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 297.7 KiB
 libgcrypt                         i686   0:1.11.2-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.2 MiB
 libgomp                           i686   0:16.0.0-0.3.fc44            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 573.9 KiB
 libgpg-error                      i686   0:1.58-1.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 935.9 KiB
 libidn2                           i686   0:2.3.8-2.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 551.8 KiB
 libksba                           i686   0:1.6.7-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 397.9 KiB
 liblastlog2                       i686   0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  32.1 KiB
 libmount                          i686   0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 411.7 KiB
 libnghttp2                        i686   0:1.68.0-2.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 161.5 KiB
 libnghttp3                        i686   0:1.14.0-1.fc44              local                                                                        163.0 KiB
 libpkgconf                        i686   0:2.3.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  76.6 KiB
 libpsl                            i686   0:0.21.5-6.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  75.7 KiB
 libselinux                        i686   0:3.9-5.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 212.4 KiB
 libselinux-utils                  i686   0:3.9-5.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 263.8 KiB
 libsemanage                       i686   0:3.9-4.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 319.9 KiB
 libsepol                          i686   0:3.9-2.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 873.3 KiB
 libsmartcols                      i686   0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 187.7 KiB
 libssh                            i686   0:0.11.3-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 613.0 KiB
 libssh-config                     noarch 0:0.11.3-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 277.0   B
 libstdc++                         i686   0:16.0.0-0.3.fc44            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.9 MiB
 libtasn1                          i686   0:4.20.0-2.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 175.5 KiB
 libtool-ltdl                      i686   0:2.5.4-9.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  73.3 KiB
 libunistring                      i686   0:1.1-10.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.7 MiB
 libusb1                           i686   0:1.0.29-4.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 178.5 KiB
 libuuid                           i686   0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  40.5 KiB
 libverto                          i686   0:0.3.2-11.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  24.7 KiB
 libxcrypt                         i686   0:4.5.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 296.7 KiB
 libxml2                           i686   0:2.12.10-5.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.8 MiB
 libzstd                           i686   0:1.5.7-3.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 920.0 KiB
 linkdupes                         i686   0:0.7.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 821.1 KiB
 lua-libs                          i686   0:5.4.8-4.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 309.4 KiB
 lua-srpm-macros                   noarch 0:1-16.fc43                  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.3 KiB
 lz4-libs                          i686   0:1.10.0-3.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 160.6 KiB
 mpfr                              i686   0:4.2.2-2.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 963.3 KiB
 ncurses-base                      noarch 0:6.5-8.20250614.fc44        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 328.1 KiB
 ncurses-libs                      i686   0:6.5-8.20250614.fc44        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 949.6 KiB
 nettle                            i686   0:3.10.1-2.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 776.6 KiB
 ngtcp2                            i686   0:1.18.0-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 373.7 KiB
 ngtcp2-crypto-ossl                i686   0:1.18.0-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  46.9 KiB
 npth                              i686   0:1.8-3.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  48.9 KiB
 ocaml-srpm-macros                 noarch 0:11-2.fc43                  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 KiB
 openblas-srpm-macros              noarch 0:2-20.fc43                  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 112.0   B
 openldap                          i686   0:2.6.10-4.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 673.0 KiB
 openssl-libs                      i686   1:3.5.4-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   7.3 MiB
 p11-kit                           i686   0:0.25.8-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.4 MiB
 p11-kit-trust                     i686   0:0.25.8-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 396.5 KiB
 package-notes-srpm-macros         noarch 0:0.5-14.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.6 KiB
 pam-libs                          i686   0:1.7.1-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 128.5 KiB
 pcre2                             i686   0:10.47-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 705.1 KiB
 pcre2-syntax                      noarch 0:10.47-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 281.9 KiB
 perl-srpm-macros                  noarch 0:1-60.fc43                  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 861.0   B
 pkgconf                           i686   0:2.3.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  82.9 KiB
 pkgconf-m4                        noarch 0:2.3.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  14.4 KiB
 pkgconf-pkg-config                i686   0:2.3.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 979.0   B
 policycoreutils                   i686   0:3.9-5.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 655.4 KiB
 popt                              i686   0:1.19-9.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 135.8 KiB
 publicsuffix-list-dafsa           noarch 0:20250616-2.fc43            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  69.1 KiB
 pyproject-srpm-macros             noarch 0:1.18.6-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 KiB
 python-srpm-macros                noarch 0:3.14-9.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  51.6 KiB
 qt5-srpm-macros                   noarch 0:5.15.18-1.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 500.0   B
 qt6-srpm-macros                   noarch 0:6.10.1-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 464.0   B
 readline                          i686   0:8.3-2.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 484.0 KiB
 rpm                               i686   0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.1 MiB
 rpm-build-libs                    i686   0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 267.1 KiB
 rpm-libs                          i686   0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 956.8 KiB
 rpm-plugin-selinux                i686   0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  11.1 KiB
 rpm-sequoia                       i686   0:1.10.0-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.7 MiB
 rpm-sign-libs                     i686   0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  30.9 KiB
 rust-srpm-macros                  noarch 0:28.4-1.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   5.5 KiB
 selinux-policy                    noarch 0:42.19-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  32.0 KiB
 selinux-policy-targeted           noarch 0:42.19-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  18.7 MiB
 setup                             noarch 0:2.15.0-27.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 724.9 KiB
 sqlite-libs                       i686   0:3.51.0-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.6 MiB
 systemd-libs                      i686   0:259-1.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.3 MiB
 systemd-standalone-sysusers       i686   0:259-1.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 292.7 KiB
 tpm2-tss                          i686   0:4.1.3-8.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.6 MiB
 tree-sitter-srpm-macros           noarch 0:0.4.2-1.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   8.3 KiB
 util-linux-core                   i686   0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.4 MiB
 xxhash-libs                       i686   0:0.8.3-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 113.5 KiB
 xz-libs                           i686   1:5.8.1-4.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 233.3 KiB
 zig-srpm-macros                   noarch 0:1-5.fc43                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.1 KiB
 zip                               i686   0:3.0-44.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 694.3 KiB
 zlib-ng-compat                    i686   0:2.3.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 184.9 KiB
 zstd                              i686   0:1.5.7-3.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 519.0 KiB
Installing groups:
 build                                                                                                                                                       

Transaction Summary:
 Installing:       183 packages

Total size of inbound packages is 68 MiB. Need to download 0 B.
After this operation, 218 MiB extra will be used (install 218 MiB, remove 0 B).
[  1/183] bash-0:5.3.0-2.fc44.i686      100% |   0.0   B/s |   0.0   B |  00m00s
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[  2/183] shadow-utils-2:4.18.0-7.fc44. 100% |   0.0   B/s |   0.0   B |  00m00s
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[  3/183] coreutils-0:9.9-1.fc44.i686   100% |   0.0   B/s |   0.0   B |  00m00s
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[  4/183] fedora-release-0:44-0.10.noar 100% |   0.0   B/s |   0.0   B |  00m00s
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[  5/183] util-linux-0:2.41.3-8.fc44.i6 100% |   0.0   B/s |   0.0   B |  00m00s
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[  6/183] glibc-minimal-langpack-0:2.42 100% |   0.0   B/s |   0.0   B |  00m00s
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[  7/183] redhat-rpm-config-0:343-19.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[  8/183] rpm-build-0:6.0.1-1.fc44.i686 100% |   0.0   B/s |   0.0   B |  00m00s
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[  9/183] sed-0:4.9-6.fc44.i686         100% |   0.0   B/s |   0.0   B |  00m00s
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[ 10/183] tar-2:1.35-6.fc43.i686        100% |   0.0   B/s |   0.0   B |  00m00s
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[ 11/183] unzip-0:6.0-68.fc44.i686      100% |   0.0   B/s |   0.0   B |  00m00s
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[ 12/183] which-0:2.23-3.fc43.i686      100% |   0.0   B/s |   0.0   B |  00m00s
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[ 13/183] bzip2-0:1.0.8-21.fc44.i686    100% |   0.0   B/s |   0.0   B |  00m00s
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[ 14/183] cpio-0:2.15-6.fc43.i686       100% |   0.0   B/s |   0.0   B |  00m00s
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[ 15/183] diffutils-0:3.12-3.fc44.i686  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 16/183] findutils-1:4.10.0-6.fc44.i68 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 17/183] gawk-0:5.3.2-2.fc44.i686      100% |   0.0   B/s |   0.0   B |  00m00s
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[ 18/183] grep-0:3.12-2.fc44.i686       100% |   0.0   B/s |   0.0   B |  00m00s
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[ 19/183] gzip-0:1.14-1.fc44.i686       100% |   0.0   B/s |   0.0   B |  00m00s
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[ 20/183] info-0:7.2-7.fc44.i686        100% |   0.0   B/s |   0.0   B |  00m00s
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[ 21/183] patch-0:2.8-3.fc44.i686       100% |   0.0   B/s |   0.0   B |  00m00s
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[ 22/183] xz-1:5.8.1-4.fc44.i686        100% |   0.0   B/s |   0.0   B |  00m00s
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[ 23/183] glibc-0:2.42.9000-17.fc44.i68 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 24/183] pcre2-0:10.47-1.fc44.i686     100% |   0.0   B/s |   0.0   B |  00m00s
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[ 25/183] glibc-common-0:2.42.9000-17.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 26/183] filesystem-0:3.18-51.fc44.i68 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 27/183] glibc-gconv-extra-0:2.42.9000 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 28/183] libgcc-0:16.0.0-0.3.fc44.i686 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 30/183] mpfr-0:4.2.2-2.fc43.i686      100% |   0.0   B/s |   0.0   B |  00m00s
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[ 31/183] readline-0:8.3-2.fc43.i686    100% |   0.0   B/s |   0.0   B |  00m00s
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[ 32/183] libselinux-0:3.9-5.fc44.i686  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 33/183] setup-0:2.15.0-27.fc44.noarch 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 34/183] bzip2-libs-0:1.0.8-21.fc44.i6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 35/183] ncurses-libs-0:6.5-8.20250614 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 36/183] xz-libs-1:5.8.1-4.fc44.i686   100% |   0.0   B/s |   0.0   B |  00m00s
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[ 37/183] audit-libs-0:4.1.2-2.fc44.i68 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 38/183] libblkid-0:2.41.3-8.fc44.i686 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 39/183] libcap-ng-0:0.8.5-8.fc44.i686 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 40/183] libfdisk-0:2.41.3-8.fc44.i686 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 41/183] liblastlog2-0:2.41.3-8.fc44.i 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 42/183] libmount-0:2.41.3-8.fc44.i686 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 43/183] libsmartcols-0:2.41.3-8.fc44. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 44/183] libuuid-0:2.41.3-8.fc44.i686  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 45/183] pam-libs-0:1.7.1-3.fc43.i686  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 46/183] systemd-libs-0:259-1.fc44.i68 100% |   0.0   B/s |   0.0   B |  00m00s
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--------------------------------------------------------------------------------
[183/183] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
Running transaction
[  1/185] Verify package files          100% | 665.0   B/s | 183.0   B |  00m00s
>>> Running %pretrans scriptlet: filesystem-0:3.18-51.fc44.i686
>>> Finished %pretrans scriptlet: filesystem-0:3.18-51.fc44.i686
>>> [RPM] /var/lib/mock/fedora-rawhide-i686-1766855907.055821/root/var/cache/dnf/copr_base-7e55b3bc06c2f1cc/packages/bash-5.3.0-2.fc44.i686.rpm: Header OpenPGP V4 RSA/SHA256 signature, key ID 52ac7d71d4a9769d: NOKEY
[  2/185] Prepare transaction           100% |   3.4 KiB/s | 183.0   B |  00m00s
[  3/185] Installing libgcc-0:16.0.0-0. 100% | 292.4 MiB/s | 299.4 KiB |  00m00s
[  4/185] Installing publicsuffix-list- 100% |   0.0   B/s |  69.8 KiB |  00m00s
[  5/185] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  6/185] Installing gnulib-l10n-0:2024 100% | 215.5 MiB/s | 661.9 KiB |  00m00s
[  7/185] Installing coreutils-common-0 100% | 374.3 MiB/s |  11.2 MiB |  00m00s
[  8/185] Installing fedora-release-ide 100% |   0.0   B/s | 920.0   B |  00m00s
[  9/185] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[ 10/185] Installing fedora-gpg-keys-0: 100% |  43.7 MiB/s | 179.0 KiB |  00m00s
[ 11/185] Installing fedora-repos-0:44- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[ 12/185] Installing fedora-release-com 100% |  24.3 MiB/s |  24.9 KiB |  00m00s
[ 13/185] Installing fedora-release-0:4 100% |  17.3 KiB/s | 124.0   B |  00m00s
>>> Running sysusers scriptlet: setup-0:2.15.0-27.fc44.noarch
>>> Finished sysusers scriptlet: setup-0:2.15.0-27.fc44.noarch
>>> Scriptlet output:
>>> Creating group 'adm' with GID 4.
>>> Creating group 'audio' with GID 63.
>>> Creating group 'cdrom' with GID 11.
>>> Creating group 'clock' with GID 103.
>>> Creating group 'dialout' with GID 18.
>>> Creating group 'disk' with GID 6.
>>> Creating group 'floppy' with GID 19.
>>> Creating group 'ftp' with GID 50.
>>> Creating group 'games' with GID 20.
>>> Creating group 'input' with GID 104.
>>> Creating group 'kmem' with GID 9.
>>> Creating group 'kvm' with GID 36.
>>> Creating group 'lock' with GID 54.
>>> Creating group 'lp' with GID 7.
>>> Creating group 'mail' with GID 12.
>>> Creating group 'man' with GID 15.
>>> Creating group 'mem' with GID 8.
>>> Creating group 'nobody' with GID 65534.
>>> Creating group 'render' with GID 105.
>>> Creating group 'root' with GID 0.
>>> Creating group 'sgx' with GID 106.
>>> Creating group 'sys' with GID 3.
>>> Creating group 'tape' with GID 33.
>>> Creating group 'tty' with GID 5.
>>> Creating group 'users' with GID 100.
>>> Creating group 'utmp' with GID 22.
>>> Creating group 'video' with GID 39.
>>> Creating group 'wheel' with GID 10.
>>> Creating user 'adm' (adm) with UID 3 and GID 4.
>>> Creating group 'bin' with GID 1.
>>> Creating user 'bin' (bin) with UID 1 and GID 1.
>>> Creating group 'daemon' with GID 2.
>>> Creating user 'daemon' (daemon) with UID 2 and GID 2.
>>> Creating user 'ftp' (FTP User) with UID 14 and GID 50.
>>> Creating user 'games' (games) with UID 12 and GID 100.
>>> Creating user 'halt' (halt) with UID 7 and GID 0.
>>> Creating user 'lp' (lp) with UID 4 and GID 7.
>>> Creating user 'mail' (mail) with UID 8 and GID 12.
>>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534.
>>> Creating user 'operator' (operator) with UID 11 and GID 0.
>>> Creating user 'root' (Super User) with UID 0 and GID 0.
>>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0.
>>> Creating user 'sync' (sync) with UID 5 and GID 0.
>>> 
[ 14/185] Installing setup-0:2.15.0-27. 100% |  51.0 MiB/s | 730.6 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 15/185] Installing filesystem-0:3.18- 100% |   2.7 MiB/s | 212.3 KiB |  00m00s
[ 16/185] Installing ncurses-base-0:6.5 100% |  86.3 MiB/s | 353.5 KiB |  00m00s
[ 17/185] Installing pcre2-syntax-0:10. 100% | 277.7 MiB/s | 284.3 KiB |  00m00s
[ 18/185] Installing pkgconf-m4-0:2.3.0 100% |   0.0   B/s |  14.8 KiB |  00m00s
[ 19/185] Installing rust-srpm-macros-0 100% |   0.0   B/s |   6.4 KiB |  00m00s
[ 20/185] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 740.0   B |  00m00s
[ 21/185] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[ 22/185] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[ 23/185] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[ 24/185] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[ 25/185] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.1 KiB |  00m00s
[ 26/185] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[ 27/185] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[ 28/185] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 29/185] Installing gap-srpm-macros-0: 100% |   0.0   B/s |   2.7 KiB |  00m00s
[ 30/185] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[ 31/185] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[ 32/185] Installing bash-0:5.3.0-2.fc4 100% | 260.3 MiB/s |   8.6 MiB |  00m00s
[ 33/185] Installing glibc-common-0:2.4 100% |  59.9 MiB/s |   1.0 MiB |  00m00s
[ 34/185] Installing glibc-gconv-extra- 100% | 252.1 MiB/s |   6.8 MiB |  00m00s
[ 35/185] Installing glibc-0:2.42.9000- 100% | 159.6 MiB/s |   5.7 MiB |  00m00s
[ 36/185] Installing ncurses-libs-0:6.5 100% | 233.4 MiB/s | 956.1 KiB |  00m00s
[ 37/185] Installing glibc-minimal-lang 100% |  17.3 KiB/s | 124.0   B |  00m00s
[ 38/185] Installing crypto-policies-0: 100% |  30.8 MiB/s | 157.7 KiB |  00m00s
[ 39/185] Installing filesystem-srpm-ma 100% |   0.0   B/s |  38.9 KiB |  00m00s
[ 40/185] Installing elfutils-default-y 100% | 340.5 KiB/s |   2.0 KiB |  00m00s
[ 41/185] Installing zlib-ng-compat-0:2 100% | 181.3 MiB/s | 185.6 KiB |  00m00s
[ 42/185] Installing bzip2-libs-0:1.0.8 100% |  78.9 MiB/s |  80.8 KiB |  00m00s
[ 43/185] Installing libgpg-error-0:1.5 100% |  57.5 MiB/s | 941.8 KiB |  00m00s
[ 44/185] Installing libassuan-0:2.5.7- 100% | 164.9 MiB/s | 168.8 KiB |  00m00s
[ 45/185] Installing libgcrypt-0:1.11.2 100% | 312.5 MiB/s |   1.3 MiB |  00m00s
[ 46/185] Installing readline-0:8.3-2.f 100% | 237.4 MiB/s | 486.1 KiB |  00m00s
[ 47/185] Installing gmp-1:6.3.0-4.fc44 100% | 359.6 MiB/s | 736.5 KiB |  00m00s
[ 48/185] Installing xz-libs-1:5.8.1-4. 100% | 228.9 MiB/s | 234.4 KiB |  00m00s
[ 49/185] Installing libuuid-0:2.41.3-8 100% |   0.0   B/s |  41.6 KiB |  00m00s
[ 50/185] Installing popt-0:1.19-9.fc43 100% |  69.5 MiB/s | 142.4 KiB |  00m00s
[ 51/185] Installing libzstd-0:1.5.7-3. 100% | 299.9 MiB/s | 921.2 KiB |  00m00s
[ 52/185] Installing elfutils-libelf-0: 100% | 376.1 MiB/s |   1.1 MiB |  00m00s
[ 53/185] Installing npth-0:1.8-3.fc43. 100% |   0.0   B/s |  50.0 KiB |  00m00s
[ 54/185] Installing elfutils-libs-0:0. 100% | 359.2 MiB/s | 735.7 KiB |  00m00s
[ 55/185] Installing libblkid-0:2.41.3- 100% | 279.6 MiB/s | 286.3 KiB |  00m00s
[ 56/185] Installing systemd-libs-0:259 100% | 334.1 MiB/s |   2.3 MiB |  00m00s
[ 57/185] Installing libxcrypt-0:4.5.2- 100% | 292.4 MiB/s | 299.4 KiB |  00m00s
[ 58/185] Installing libsepol-0:3.9-2.f 100% | 426.9 MiB/s | 874.3 KiB |  00m00s
[ 59/185] Installing sqlite-libs-0:3.51 100% | 402.7 MiB/s |   1.6 MiB |  00m00s
[ 60/185] Installing gnupg2-gpgconf-0:2 100% |  20.8 MiB/s | 255.8 KiB |  00m00s
[ 61/185] Installing pcre2-0:10.47-1.fc 100% | 345.0 MiB/s | 706.5 KiB |  00m00s
[ 62/185] Installing libselinux-0:3.9-5 100% | 208.6 MiB/s | 213.6 KiB |  00m00s
[ 63/185] Installing grep-0:3.12-2.fc44 100% |  62.8 MiB/s |   1.0 MiB |  00m00s
[ 64/185] Installing findutils-1:4.10.0 100% | 110.6 MiB/s |   1.9 MiB |  00m00s
[ 65/185] Installing libattr-0:2.5.2-6. 100% |  24.0 MiB/s |  24.6 KiB |  00m00s
[ 66/185] Installing libacl-0:2.3.2-4.f 100% |   0.0   B/s |  35.9 KiB |  00m00s
[ 67/185] Installing sed-0:4.9-6.fc44.i 100% |  56.6 MiB/s | 868.6 KiB |  00m00s
[ 68/185] Installing libtasn1-0:4.20.0- 100% | 173.2 MiB/s | 177.4 KiB |  00m00s
[ 69/185] Installing libunistring-0:1.1 100% | 346.8 MiB/s |   1.7 MiB |  00m00s
[ 70/185] Installing libidn2-0:2.3.8-2. 100% | 181.6 MiB/s | 557.9 KiB |  00m00s
[ 71/185] Installing xz-1:5.8.1-4.fc44. 100% |  83.6 MiB/s |   1.3 MiB |  00m00s
[ 72/185] Installing libmount-0:2.41.3- 100% | 201.6 MiB/s | 412.9 KiB |  00m00s
[ 73/185] Installing gnupg2-verify-0:2. 100% |  30.0 MiB/s | 368.6 KiB |  00m00s
[ 74/185] Installing dwz-0:0.16-2.fc44. 100% |  27.5 MiB/s | 310.3 KiB |  00m00s
[ 75/185] Installing mpfr-0:4.2.2-2.fc4 100% | 314.1 MiB/s | 964.9 KiB |  00m00s
[ 76/185] Installing gawk-0:5.3.2-2.fc4 100% | 107.6 MiB/s |   1.8 MiB |  00m00s
[ 77/185] Installing libksba-0:1.6.7-4. 100% | 195.5 MiB/s | 400.4 KiB |  00m00s
[ 78/185] Installing unzip-0:6.0-68.fc4 100% |  32.5 MiB/s | 399.3 KiB |  00m00s
[ 79/185] Installing file-libs-0:5.46-8 100% | 659.4 MiB/s |  11.9 MiB |  00m00s
[ 80/185] Installing file-0:5.46-8.fc44 100% |   7.9 MiB/s |  96.7 KiB |  00m00s
[ 81/185] Installing diffutils-0:3.12-3 100% | 104.6 MiB/s |   1.6 MiB |  00m00s
[ 82/185] Installing libcap-ng-0:0.8.5- 100% |  67.6 MiB/s |  69.2 KiB |  00m00s
[ 83/185] Installing audit-libs-0:4.1.2 100% | 385.9 MiB/s | 395.2 KiB |  00m00s
[ 84/185] Installing libsemanage-0:3.9- 100% | 314.2 MiB/s | 321.7 KiB |  00m00s
[ 85/185] Installing libsmartcols-0:2.4 100% | 184.3 MiB/s | 188.7 KiB |  00m00s
[ 86/185] Installing libeconf-0:0.7.9-2 100% |   0.0   B/s |  65.8 KiB |  00m00s
[ 87/185] Installing pam-libs-0:1.7.1-3 100% | 127.8 MiB/s | 130.9 KiB |  00m00s
[ 88/185] Installing libcap-0:2.77-1.fc 100% |  16.2 MiB/s | 198.9 KiB |  00m00s
[ 89/185] Installing alternatives-0:1.3 100% |   5.6 MiB/s |  62.9 KiB |  00m00s
[ 90/185] Installing lua-libs-0:5.4.8-4 100% | 303.6 MiB/s | 310.9 KiB |  00m00s
[ 91/185] Installing json-c-0:0.18-7.fc 100% |   0.0   B/s |  87.1 KiB |  00m00s
[ 92/185] Installing libffi-0:3.5.2-1.f 100% |  78.4 MiB/s |  80.3 KiB |  00m00s
[ 93/185] Installing p11-kit-0:0.25.8-1 100% | 127.3 MiB/s |   2.4 MiB |  00m00s
[ 94/185] Installing p11-kit-trust-0:0. 100% |  19.4 MiB/s | 398.3 KiB |  00m00s
[ 95/185] Installing ngtcp2-0:1.18.0-1. 100% | 183.2 MiB/s | 375.2 KiB |  00m00s
[ 96/185] Installing openssl-libs-1:3.5 100% | 364.6 MiB/s |   7.3 MiB |  00m00s
[ 97/185] Installing coreutils-0:9.9-1. 100% | 168.3 MiB/s |   5.4 MiB |  00m00s
[ 98/185] Installing ca-certificates-0: 100% |   1.6 MiB/s |   2.5 MiB |  00m02s
[ 99/185] Installing gzip-0:1.14-1.fc44 100% |  28.1 MiB/s | 402.4 KiB |  00m00s
[100/185] Installing rpm-sequoia-0:1.10 100% | 392.3 MiB/s |   2.7 MiB |  00m00s
[101/185] Installing libfsverity-0:1.6- 100% |   0.0   B/s |  28.7 KiB |  00m00s
[102/185] Installing libevent-0:2.1.12- 100% | 307.0 MiB/s | 943.0 KiB |  00m00s
[103/185] Installing ngtcp2-crypto-ossl 100% |   0.0   B/s |  47.8 KiB |  00m00s
[104/185] Installing util-linux-core-0: 100% |  81.4 MiB/s |   1.4 MiB |  00m00s
[105/185] Installing zip-0:3.0-44.fc43. 100% |  52.4 MiB/s | 698.2 KiB |  00m00s
[106/185] Installing gnupg2-keyboxd-0:2 100% |  28.1 MiB/s | 201.2 KiB |  00m00s
[107/185] Installing libpsl-0:0.21.5-6. 100% |  75.0 MiB/s |  76.8 KiB |  00m00s
[108/185] Installing tar-2:1.35-6.fc43. 100% | 142.8 MiB/s |   3.0 MiB |  00m00s
[109/185] Installing linkdupes-0:0.7.2- 100% |  61.8 MiB/s | 822.5 KiB |  00m00s
[110/185] Installing libselinux-utils-0 100% |  20.9 MiB/s | 278.2 KiB |  00m00s
[111/185] Installing liblastlog2-0:2.41 100% |   5.5 MiB/s |  34.0 KiB |  00m00s
[112/185] Installing systemd-standalone 100% |  22.0 MiB/s | 293.2 KiB |  00m00s
[113/185] Installing libusb1-0:1.0.29-4 100% |  22.0 MiB/s | 180.2 KiB |  00m00s
>>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.i686
>>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.i686
>>> Scriptlet output:
>>> Creating group 'tss' with GID 59.
>>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59.
>>> 
[114/185] Installing tpm2-tss-0:4.1.3-8 100% | 271.8 MiB/s |   1.6 MiB |  00m00s
[115/185] Installing gnupg2-gpg-agent-0 100% |  32.4 MiB/s | 696.2 KiB |  00m00s
[116/185] Installing ima-evm-utils-libs 100% |  51.9 MiB/s |  53.2 KiB |  00m00s
[117/185] Installing libfdisk-0:2.41.3- 100% | 207.4 MiB/s | 424.7 KiB |  00m00s
[118/185] Installing util-linux-0:2.41. 100% |  95.7 MiB/s |   3.3 MiB |  00m00s
[119/185] Installing policycoreutils-0: 100% |  26.7 MiB/s | 683.6 KiB |  00m00s
[120/185] Installing selinux-policy-0:4 100% |   1.6 MiB/s |  33.6 KiB |  00m00s
[121/185] Installing selinux-policy-tar 100% | 191.2 MiB/s |  14.9 MiB |  00m00s
[122/185] Installing libxml2-0:2.12.10- 100% |  94.9 MiB/s |   1.8 MiB |  00m00s
[123/185] Installing nettle-0:3.10.1-2. 100% | 253.8 MiB/s | 779.7 KiB |  00m00s
[124/185] Installing gnutls-0:3.8.11-8. 100% | 351.9 MiB/s |   3.9 MiB |  00m00s
[125/185] Installing bzip2-0:1.0.8-21.f 100% |   7.3 MiB/s |  89.9 KiB |  00m00s
[126/185] Installing add-determinism-0: 100% | 120.3 MiB/s |   2.2 MiB |  00m00s
[127/185] Installing build-reproducibil 100% |   0.0   B/s |   1.5 KiB |  00m00s
[128/185] Installing cpio-0:2.15-6.fc43 100% |  69.1 MiB/s |   1.1 MiB |  00m00s
[129/185] Installing libpkgconf-0:2.3.0 100% |  75.9 MiB/s |  77.7 KiB |  00m00s
[130/185] Installing pkgconf-0:2.3.0-3. 100% |   6.9 MiB/s |  85.4 KiB |  00m00s
[131/185] Installing pkgconf-pkg-config 100% | 160.5 KiB/s |   1.8 KiB |  00m00s
[132/185] Installing ed-0:1.22.3-1.fc44 100% |  12.2 MiB/s | 150.0 KiB |  00m00s
[133/185] Installing patch-0:2.8-3.fc44 100% |  19.1 MiB/s | 235.2 KiB |  00m00s
[134/185] Installing libatomic-0:16.0.0 100% |   0.0   B/s |  28.4 KiB |  00m00s
[135/185] Installing libstdc++-0:16.0.0 100% | 365.9 MiB/s |   2.9 MiB |  00m00s
[136/185] Installing rpm-libs-0:6.0.1-1 100% | 312.0 MiB/s | 958.3 KiB |  00m00s
[137/185] Installing zstd-0:1.5.7-3.fc4 100% |  39.3 MiB/s | 522.6 KiB |  00m00s
[138/185] Installing lz4-libs-0:1.10.0- 100% | 157.9 MiB/s | 161.7 KiB |  00m00s
[139/185] Installing libarchive-0:3.8.4 100% | 334.9 MiB/s |   1.0 MiB |  00m00s
[140/185] Installing jansson-0:2.14-3.f 100% |  87.5 MiB/s |  89.6 KiB |  00m00s
[141/185] Installing libgomp-0:16.0.0-0 100% | 280.9 MiB/s | 575.3 KiB |  00m00s
[142/185] Installing libtool-ltdl-0:2.5 100% |  72.6 MiB/s |  74.4 KiB |  00m00s
[143/185] Installing gdbm-libs-1:1.23-1 100% | 130.7 MiB/s | 133.9 KiB |  00m00s
[144/185] Installing cyrus-sasl-lib-0:2 100% | 137.4 MiB/s |   2.5 MiB |  00m00s
[145/185] Installing openldap-0:2.6.10- 100% | 220.3 MiB/s | 676.8 KiB |  00m00s
[146/185] Installing gnupg2-dirmngr-0:2 100% |  30.7 MiB/s | 660.4 KiB |  00m00s
[147/185] Installing gnupg2-0:2.4.8-4.f 100% | 218.9 MiB/s |   6.6 MiB |  00m00s
[148/185] Installing gpgverify-0:2.2-3. 100% |   0.0   B/s |   9.4 KiB |  00m00s
[149/185] Installing rpm-sign-libs-0:6. 100% |   0.0   B/s |  31.8 KiB |  00m00s
[150/185] Installing rpm-build-libs-0:6 100% | 261.6 MiB/s | 267.9 KiB |  00m00s
[151/185] Installing xxhash-libs-0:0.8. 100% | 112.2 MiB/s | 114.9 KiB |  00m00s
[152/185] Installing libbrotli-0:1.2.0- 100% | 277.8 MiB/s | 853.4 KiB |  00m00s
[153/185] Installing libnghttp2-0:1.68. 100% | 158.8 MiB/s | 162.6 KiB |  00m00s
[154/185] Installing libnghttp3-0:1.14. 100% | 160.6 MiB/s | 164.4 KiB |  00m00s
[155/185] Installing keyutils-libs-0:1. 100% |   0.0   B/s |  54.8 KiB |  00m00s
[156/185] Installing libcom_err-0:1.47. 100% |   0.0   B/s |  63.4 KiB |  00m00s
[157/185] Installing libverto-0:0.3.2-1 100% |  25.8 MiB/s |  26.5 KiB |  00m00s
[158/185] Installing krb5-libs-0:1.21.3 100% | 290.1 MiB/s |   2.3 MiB |  00m00s
[159/185] Installing libssh-0:0.11.3-1. 100% | 300.3 MiB/s | 615.1 KiB |  00m00s
[160/185] Installing libcurl-0:8.18.0~r 100% | 332.0 MiB/s |   1.0 MiB |  00m00s
[161/185] Installing elfutils-debuginfo 100% |   5.8 MiB/s |  76.6 KiB |  00m00s
[162/185] Installing binutils-0:2.45.50 100% | 319.3 MiB/s |  27.5 MiB |  00m00s
[163/185] Installing elfutils-0:0.194-2 100% | 129.8 MiB/s |   2.6 MiB |  00m00s
[164/185] Installing gdb-minimal-0:16.3 100% | 277.0 MiB/s |  13.9 MiB |  00m00s
[165/185] Installing debugedit-0:5.2-3. 100% |  16.7 MiB/s | 221.9 KiB |  00m00s
[166/185] Installing curl-0:8.18.0~rc2- 100% |  22.4 MiB/s | 481.4 KiB |  00m00s
[167/185] Installing rpm-0:6.0.1-1.fc44 100% |  79.1 MiB/s |   2.5 MiB |  00m00s
[168/185] Installing cmake-srpm-macros- 100% |   0.0   B/s | 804.0   B |  00m00s
[169/185] Installing efi-srpm-macros-0: 100% |   0.0   B/s |  41.2 KiB |  00m00s
[170/185] Installing java-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[171/185] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[172/185] Installing tree-sitter-srpm-m 100% |   0.0   B/s |   9.3 KiB |  00m00s
[173/185] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[174/185] Installing redhat-rpm-config- 100% |  92.7 MiB/s | 189.9 KiB |  00m00s
[175/185] Installing forge-srpm-macros- 100% |   0.0   B/s |  40.3 KiB |  00m00s
[176/185] Installing fonts-srpm-macros- 100% |   0.0   B/s |  57.0 KiB |  00m00s
[177/185] Installing go-srpm-macros-0:3 100% |   0.0   B/s |  63.0 KiB |  00m00s
[178/185] Installing R-srpm-macros-0:1. 100% |   0.0   B/s |   4.0 KiB |  00m00s
[179/185] Installing python-srpm-macros 100% |   0.0   B/s |  52.9 KiB |  00m00s
[180/185] Installing rpm-build-0:6.0.1- 100% |  18.0 MiB/s | 276.5 KiB |  00m00s
[181/185] Installing pyproject-srpm-mac 100% |   0.0   B/s |   2.5 KiB |  00m00s
[182/185] Installing rpm-plugin-selinux 100% |   0.0   B/s |  12.2 KiB |  00m00s
[183/185] Installing which-0:2.23-3.fc4 100% |   4.6 MiB/s |  80.3 KiB |  00m00s
[184/185] Installing shadow-utils-2:4.1 100% | 135.8 MiB/s |   3.9 MiB |  00m00s
[185/185] Installing info-0:7.2-7.fc44. 100% |  46.6 KiB/s | 360.7 KiB |  00m08s
Warning: skipped OpenPGP checks for 183 packages from repositories: copr_base, https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch, local
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: R-srpm-macros-1.3.0-1.fc44.noarch
add-determinism-0.7.2-2.fc44.i686
alternatives-1.33-3.fc44.i686
ansible-srpm-macros-1-18.1.fc43.noarch
audit-libs-4.1.2-2.fc44.i686
bash-5.3.0-2.fc44.i686
binutils-2.45.50-12.fc44.i686
build-reproducibility-srpm-macros-0.7.2-2.fc44.noarch
bzip2-1.0.8-21.fc44.i686
bzip2-libs-1.0.8-21.fc44.i686
ca-certificates-2025.2.80_v9.0.304-2.fc44.noarch
cmake-srpm-macros-3.31.10-3.fc44.noarch
coreutils-9.9-1.fc44.i686
coreutils-common-9.9-1.fc44.i686
cpio-2.15-6.fc43.i686
crypto-policies-20251128-1.git19878fe.fc44.noarch
curl-8.18.0~rc2-1.fc44.i686
cyrus-sasl-lib-2.1.28-33.fc44.i686
debugedit-5.2-3.fc44.i686
diffutils-3.12-3.fc44.i686
dwz-0.16-2.fc44.i686
ed-1.22.3-1.fc44.i686
efi-srpm-macros-6-5.fc44.noarch
elfutils-0.194-2.fc44.i686
elfutils-debuginfod-client-0.194-2.fc44.i686
elfutils-default-yama-scope-0.194-2.fc44.noarch
elfutils-libelf-0.194-2.fc44.i686
elfutils-libs-0.194-2.fc44.i686
fedora-gpg-keys-44-0.1.noarch
fedora-release-44-0.10.noarch
fedora-release-common-44-0.10.noarch
fedora-release-identity-basic-44-0.10.noarch
fedora-repos-44-0.1.noarch
fedora-repos-rawhide-44-0.1.noarch
file-5.46-8.fc44.i686
file-libs-5.46-8.fc44.i686
filesystem-3.18-51.fc44.i686
filesystem-srpm-macros-3.18-51.fc44.noarch
findutils-4.10.0-6.fc44.i686
fonts-srpm-macros-5.0.0-1.fc44.noarch
forge-srpm-macros-0.4.0-3.fc43.noarch
fpc-srpm-macros-1.3-15.fc43.noarch
gap-srpm-macros-2-1.fc44.noarch
gawk-5.3.2-2.fc44.i686
gdb-minimal-16.3-6.fc44.i686
gdbm-libs-1.23-10.fc44.i686
ghc-srpm-macros-1.9.2-3.fc43.noarch
glibc-2.42.9000-17.fc44.i686
glibc-common-2.42.9000-17.fc44.i686
glibc-gconv-extra-2.42.9000-17.fc44.i686
glibc-minimal-langpack-2.42.9000-17.fc44.i686
gmp-6.3.0-4.fc44.i686
gnat-srpm-macros-6-8.fc43.noarch
gnulib-l10n-20241231-1.fc44.noarch
gnupg2-2.4.8-4.fc44.i686
gnupg2-dirmngr-2.4.8-4.fc44.i686
gnupg2-gpg-agent-2.4.8-4.fc44.i686
gnupg2-gpgconf-2.4.8-4.fc44.i686
gnupg2-keyboxd-2.4.8-4.fc44.i686
gnupg2-verify-2.4.8-4.fc44.i686
gnutls-3.8.11-8.fc44.i686
go-srpm-macros-3.8.0-1.fc44.noarch
gpgverify-2.2-3.fc43.noarch
grep-3.12-2.fc44.i686
gzip-1.14-1.fc44.i686
ima-evm-utils-libs-1.6.2-7.fc44.i686
info-7.2-7.fc44.i686
jansson-2.14-3.fc44.i686
java-srpm-macros-1-7.fc43.noarch
json-c-0.18-7.fc44.i686
kernel-srpm-macros-1.0-27.fc43.noarch
keyutils-libs-1.6.3-6.fc44.i686
krb5-libs-1.21.3-10.fc44.i686
libacl-2.3.2-4.fc44.i686
libarchive-3.8.4-1.fc44.i686
libassuan-2.5.7-4.fc43.i686
libatomic-16.0.0-0.3.fc44.i686
libattr-2.5.2-6.fc43.i686
libblkid-2.41.3-8.fc44.i686
libbrotli-1.2.0-1.fc44.i686
libcap-2.77-1.fc44.i686
libcap-ng-0.8.5-8.fc44.i686
libcom_err-1.47.3-3.fc44.i686
libcurl-8.18.0~rc2-1.fc44.i686
libeconf-0.7.9-2.fc43.i686
libevent-2.1.12-16.fc43.i686
libfdisk-2.41.3-8.fc44.i686
libffi-3.5.2-1.fc44.i686
libfsverity-1.6-3.fc44.i686
libgcc-16.0.0-0.3.fc44.i686
libgcrypt-1.11.2-1.fc44.i686
libgomp-16.0.0-0.3.fc44.i686
libgpg-error-1.58-1.fc44.i686
libidn2-2.3.8-2.fc43.i686
libksba-1.6.7-4.fc43.i686
liblastlog2-2.41.3-8.fc44.i686
libmount-2.41.3-8.fc44.i686
libnghttp2-1.68.0-2.fc44.i686
libnghttp3-1.14.0-1.fc44.i686
libpkgconf-2.3.0-3.fc43.i686
libpsl-0.21.5-6.fc43.i686
libselinux-3.9-5.fc44.i686
libselinux-utils-3.9-5.fc44.i686
libsemanage-3.9-4.fc44.i686
libsepol-3.9-2.fc43.i686
libsmartcols-2.41.3-8.fc44.i686
libssh-0.11.3-1.fc44.i686
libssh-config-0.11.3-1.fc44.noarch
libstdc++-16.0.0-0.3.fc44.i686
libtasn1-4.20.0-2.fc43.i686
libtool-ltdl-2.5.4-9.fc44.i686
libunistring-1.1-10.fc43.i686
libusb1-1.0.29-4.fc44.i686
libuuid-2.41.3-8.fc44.i686
libverto-0.3.2-11.fc43.i686
libxcrypt-4.5.2-2.fc44.i686
libxml2-2.12.10-5.fc44.i686
libzstd-1.5.7-3.fc44.i686
linkdupes-0.7.2-2.fc44.i686
lua-libs-5.4.8-4.fc44.i686
lua-srpm-macros-1-16.fc43.noarch
lz4-libs-1.10.0-3.fc43.i686
mpfr-4.2.2-2.fc43.i686
ncurses-base-6.5-8.20250614.fc44.noarch
ncurses-libs-6.5-8.20250614.fc44.i686
nettle-3.10.1-2.fc43.i686
ngtcp2-1.18.0-1.fc44.i686
ngtcp2-crypto-ossl-1.18.0-1.fc44.i686
npth-1.8-3.fc43.i686
ocaml-srpm-macros-11-2.fc43.noarch
openblas-srpm-macros-2-20.fc43.noarch
openldap-2.6.10-4.fc44.i686
openssl-libs-3.5.4-1.fc44.i686
p11-kit-0.25.8-1.fc44.i686
p11-kit-trust-0.25.8-1.fc44.i686
package-notes-srpm-macros-0.5-14.fc43.noarch
pam-libs-1.7.1-3.fc43.i686
patch-2.8-3.fc44.i686
pcre2-10.47-1.fc44.i686
pcre2-syntax-10.47-1.fc44.noarch
perl-srpm-macros-1-60.fc43.noarch
pkgconf-2.3.0-3.fc43.i686
pkgconf-m4-2.3.0-3.fc43.noarch
pkgconf-pkg-config-2.3.0-3.fc43.i686
policycoreutils-3.9-5.fc44.i686
popt-1.19-9.fc43.i686
publicsuffix-list-dafsa-20250616-2.fc43.noarch
pyproject-srpm-macros-1.18.6-1.fc44.noarch
python-srpm-macros-3.14-9.fc44.noarch
qt5-srpm-macros-5.15.18-1.fc44.noarch
qt6-srpm-macros-6.10.1-1.fc44.noarch
readline-8.3-2.fc43.i686
redhat-rpm-config-343-19.fc44.noarch
rpm-6.0.1-1.fc44.i686
rpm-build-6.0.1-1.fc44.i686
rpm-build-libs-6.0.1-1.fc44.i686
rpm-libs-6.0.1-1.fc44.i686
rpm-plugin-selinux-6.0.1-1.fc44.i686
rpm-sequoia-1.10.0-1.fc44.i686
rpm-sign-libs-6.0.1-1.fc44.i686
rust-srpm-macros-28.4-1.fc44.noarch
sed-4.9-6.fc44.i686
selinux-policy-42.19-1.fc44.noarch
selinux-policy-targeted-42.19-1.fc44.noarch
setup-2.15.0-27.fc44.noarch
shadow-utils-4.18.0-7.fc44.i686
sqlite-libs-3.51.0-1.fc44.i686
systemd-libs-259-1.fc44.i686
systemd-standalone-sysusers-259-1.fc44.i686
tar-1.35-6.fc43.i686
tpm2-tss-4.1.3-8.fc43.i686
tree-sitter-srpm-macros-0.4.2-1.fc43.noarch
unzip-6.0-68.fc44.i686
util-linux-2.41.3-8.fc44.i686
util-linux-core-2.41.3-8.fc44.i686
which-2.23-3.fc43.i686
xxhash-libs-0.8.3-3.fc43.i686
xz-5.8.1-4.fc44.i686
xz-libs-5.8.1-4.fc44.i686
zig-srpm-macros-1-5.fc43.noarch
zip-3.0-44.fc43.i686
zlib-ng-compat-2.3.2-2.fc44.i686
zstd-1.5.7-3.fc44.i686
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1753315200
Wrote: /builddir/build/SRPMS/lagan-2.0-45.fc44.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1766855907.055821/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-fe1lw_uh/lagan/lagan.spec) Config(child) 0 minutes 18 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/lagan-2.0-45.fc44.src.rpm)  Config(fedora-rawhide-i686)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1766855907.055821/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1766855907.055821/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1766855907.055821/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-1.fc44.x86_64
  rpm-sequoia-1.10.0-1.fc44.x86_64
  dnf5-5.3.0.0-3.fc44.x86_64
  dnf5-plugins-5.3.0.0-3.fc44.x86_64
Finish: chroot init
Start: build phase for lagan-2.0-45.fc44.src.rpm
Start: build setup for lagan-2.0-45.fc44.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1753315200
Wrote: /builddir/build/SRPMS/lagan-2.0-45.fc44.src.rpm
Updating and loading repositories:
 Additional repo https_kojipkgs_fedorap 100% |  68.5 KiB/s |   3.5 KiB |  00m00s
 local                                  100% |  68.5 KiB/s |   3.5 KiB |  00m00s
 Copr repository                        100% |  30.1 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package                 Arch   Version                Repository                                                                        Size
Installing:
 gcc-c++                i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  49.0 MiB
 make                   i686   1:4.4.1-11.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.8 MiB
 perl-generators        noarch 0:1.16-8.fc43          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  21.8 KiB
Installing dependencies:
 annobin-docs           noarch 0:13.04-3.fc44         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  99.2 KiB
 annobin-plugin-gcc     i686   0:13.04-3.fc44         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 698.6 KiB
 cpp                    i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  44.3 MiB
 gcc                    i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 123.4 MiB
 gcc-plugin-annobin     i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  59.9 KiB
 glibc-devel            i686   0:2.42.9000-17.fc44    copr_base                                                                      2.3 MiB
 groff-base             i686   0:1.23.0-11.fc44       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.8 MiB
 kernel-headers         i686   0:6.19.0-0.rc2.20.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   6.9 MiB
 libasan                i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 MiB
 libmpc                 i686   0:1.3.1-8.fc43         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 163.9 KiB
 libstdc++-devel        i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  29.8 MiB
 libubsan               i686   0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 563.1 KiB
 libxcrypt-devel        i686   0:4.5.2-2.fc44         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  31.0 KiB
 ncurses                i686   0:6.5-8.20250614.fc44  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 603.7 KiB
 perl-AutoLoader        noarch 0:5.74-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  20.6 KiB
 perl-B                 i686   0:1.89-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 504.6 KiB
 perl-Carp              noarch 0:1.54-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  46.6 KiB
 perl-Class-Struct      noarch 0:0.68-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  25.4 KiB
 perl-Data-Dumper       i686   0:2.191-521.fc43       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 110.9 KiB
 perl-Digest            noarch 0:1.20-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  35.3 KiB
 perl-Digest-MD5        i686   0:2.59-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  59.0 KiB
 perl-DynaLoader        i686   0:1.57-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  32.1 KiB
 perl-Encode            i686   4:3.21-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.2 MiB
 perl-Errno             i686   0:1.38-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   8.4 KiB
 perl-Exporter          noarch 0:5.79-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  54.3 KiB
 perl-Fcntl             i686   0:1.20-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  40.1 KiB
 perl-Fedora-VSP        noarch 0:0.001-37.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  39.7 KiB
 perl-File-Basename     noarch 0:2.86-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  14.0 KiB
 perl-File-Path         noarch 0:2.18-521.fc44        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  63.5 KiB
 perl-File-Temp         noarch 1:0.231.200-1.fc44     https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 163.7 KiB
 perl-File-stat         noarch 0:1.14-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  12.5 KiB
 perl-FileHandle        noarch 0:2.05-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   9.4 KiB
 perl-Getopt-Long       noarch 1:2.58-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 144.5 KiB
 perl-Getopt-Std        noarch 0:1.14-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  11.2 KiB
 perl-HTTP-Tiny         noarch 0:0.090-521.fc43       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 154.4 KiB
 perl-IO                i686   0:1.55-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 142.7 KiB
 perl-IO-Socket-IP      noarch 0:0.43-521.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 100.3 KiB
 perl-IO-Socket-SSL     noarch 0:2.095-2.fc43         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 714.5 KiB
 perl-IPC-Open3         noarch 0:1.24-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  27.7 KiB
 perl-MIME-Base32       noarch 0:1.303-24.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  30.7 KiB
 perl-MIME-Base64       i686   0:3.16-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  41.3 KiB
 perl-Net-SSLeay        i686   0:1.94-11.fc43         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.4 MiB
 perl-POSIX             i686   0:2.23-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 230.7 KiB
 perl-PathTools         i686   0:3.94-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 175.2 KiB
 perl-Pod-Escapes       noarch 1:1.07-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  24.9 KiB
 perl-Pod-Perldoc       noarch 0:3.28.01-521.fc43     https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 163.7 KiB
 perl-Pod-Simple        noarch 1:3.47-3.fc43          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 565.3 KiB
 perl-Pod-Usage         noarch 4:2.05-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  86.3 KiB
 perl-Scalar-List-Utils i686   5:1.70-1.fc43          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 148.3 KiB
 perl-SelectSaver       noarch 0:1.02-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.2 KiB
 perl-Socket            i686   4:2.040-2.fc43         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 111.5 KiB
 perl-Storable          i686   1:3.37-521.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 226.4 KiB
 perl-Symbol            noarch 0:1.09-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   6.8 KiB
 perl-Term-ANSIColor    noarch 0:5.01-521.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  97.5 KiB
 perl-Term-Cap          noarch 0:1.18-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  29.3 KiB
 perl-Text-ParseWords   noarch 0:3.31-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  13.6 KiB
 perl-Text-Tabs+Wrap    noarch 0:2024.001-520.fc43    https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  22.6 KiB
 perl-Time-Local        noarch 2:1.350-520.fc43       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  69.0 KiB
 perl-URI               noarch 0:5.34-2.fc44          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 268.0 KiB
 perl-base              noarch 0:2.27-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  12.6 KiB
 perl-constant          noarch 0:1.33-521.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  26.2 KiB
 perl-if                noarch 0:0.61.000-520.fc43    https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   5.8 KiB
 perl-interpreter       i686   4:5.42.0-520.fc43      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 117.8 KiB
 perl-libnet            noarch 0:3.15-521.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 289.4 KiB
 perl-libs              i686   4:5.42.0-520.fc43      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  11.8 MiB
 perl-locale            noarch 0:1.13-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   6.1 KiB
 perl-macros            noarch 4:5.42.0-520.fc43      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   5.5 KiB
 perl-mro               i686   0:1.29-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  36.8 KiB
 perl-overload          noarch 0:1.40-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  71.6 KiB
 perl-overloading       noarch 0:0.02-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   4.9 KiB
 perl-parent            noarch 1:0.244-520.fc43       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  10.3 KiB
 perl-podlators         noarch 1:6.0.2-520.fc43       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 317.5 KiB
 perl-vars              noarch 0:1.05-520.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.9 KiB

Transaction Summary:
 Installing:        76 packages

Total size of inbound packages is 93 MiB. Need to download 39 KiB.
After this operation, 287 MiB extra will be used (install 287 MiB, remove 0 B).
[ 1/76] gcc-c++-0:16.0.0-0.3.fc44.i686  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 2/76] make-1:4.4.1-11.fc43.i686       100% |   0.0   B/s |   0.0   B |  00m00s
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[ 3/76] perl-File-Basename-0:2.86-520.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 4/76] perl-interpreter-4:5.42.0-520.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 5/76] perl-macros-4:5.42.0-520.fc43.n 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 6/76] perl-Carp-0:1.54-520.fc43.noarc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 7/76] perl-Exporter-0:5.79-520.fc43.n 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 8/76] perl-libs-4:5.42.0-520.fc43.i68 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 9/76] gcc-0:16.0.0-0.3.fc44.i686      100% |   0.0   B/s |   0.0   B |  00m00s
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[10/76] libmpc-0:1.3.1-8.fc43.i686      100% |   0.0   B/s |   0.0   B |  00m00s
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[11/76] libstdc++-devel-0:16.0.0-0.3.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[12/76] cpp-0:16.0.0-0.3.fc44.i686      100% |   0.0   B/s |   0.0   B |  00m00s
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[13/76] glibc-devel-0:2.42.9000-17.fc44 100% |   0.0   B/s |   0.0   B |  00m00s
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[14/76] libasan-0:16.0.0-0.3.fc44.i686  100% |   0.0   B/s |   0.0   B |  00m00s
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[15/76] libubsan-0:16.0.0-0.3.fc44.i686 100% |   0.0   B/s |   0.0   B |  00m00s
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[16/76] kernel-headers-0:6.19.0-0.rc2.2 100% |   0.0   B/s |   0.0   B |  00m00s
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[17/76] libxcrypt-devel-0:4.5.2-2.fc44. 100% |   0.0   B/s |   0.0   B |  00m00s
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[18/76] perl-DynaLoader-0:1.57-520.fc43 100% |   0.0   B/s |   0.0   B |  00m00s
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[19/76] perl-Encode-4:3.21-520.fc43.i68 100% |   0.0   B/s |   0.0   B |  00m00s
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[20/76] perl-PathTools-0:3.94-520.fc43. 100% |   0.0   B/s |   0.0   B |  00m00s
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[21/76] perl-Errno-0:1.38-520.fc43.i686 100% |   0.0   B/s |   0.0   B |  00m00s
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[22/76] perl-Scalar-List-Utils-5:1.70-1 100% |   0.0   B/s |   0.0   B |  00m00s
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[23/76] perl-constant-0:1.33-521.fc43.n 100% |   0.0   B/s |   0.0   B |  00m00s
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[24/76] perl-Getopt-Long-1:2.58-520.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[25/76] perl-Getopt-Std-0:1.14-520.fc43 100% |   0.0   B/s |   0.0   B |  00m00s
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[26/76] perl-MIME-Base64-0:3.16-520.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[27/76] perl-Storable-1:3.37-521.fc43.i 100% |   0.0   B/s |   0.0   B |  00m00s
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[28/76] perl-overload-0:1.40-520.fc43.n 100% |   0.0   B/s |   0.0   B |  00m00s
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[29/76] perl-parent-1:0.244-520.fc43.no 100% |   0.0   B/s |   0.0   B |  00m00s
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[30/76] perl-vars-0:1.05-520.fc43.noarc 100% |   0.0   B/s |   0.0   B |  00m00s
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[31/76] perl-mro-0:1.29-520.fc43.i686   100% |   0.0   B/s |   0.0   B |  00m00s
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[32/76] perl-overloading-0:0.02-520.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[33/76] perl-Fcntl-0:1.20-520.fc43.i686 100% |   0.0   B/s |   0.0   B |  00m00s
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[34/76] perl-IO-0:1.55-520.fc43.i686    100% |   0.0   B/s |   0.0   B |  00m00s
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[35/76] perl-File-stat-0:1.14-520.fc43. 100% |   0.0   B/s |   0.0   B |  00m00s
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[36/76] perl-SelectSaver-0:1.02-520.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[37/76] perl-Socket-4:2.040-2.fc43.i686 100% |   0.0   B/s |   0.0   B |  00m00s
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[38/76] perl-Symbol-0:1.09-520.fc43.noa 100% |   0.0   B/s |   0.0   B |  00m00s
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[39/76] perl-Pod-Usage-4:2.05-520.fc43. 100% |   0.0   B/s |   0.0   B |  00m00s
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[40/76] perl-Text-ParseWords-0:3.31-520 100% |   0.0   B/s |   0.0   B |  00m00s
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[41/76] perl-base-0:2.27-520.fc43.noarc 100% |   0.0   B/s |   0.0   B |  00m00s
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[42/76] perl-Class-Struct-0:0.68-520.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[43/76] perl-Pod-Perldoc-0:3.28.01-521. 100% |   0.0   B/s |   0.0   B |  00m00s
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[44/76] perl-podlators-1:6.0.2-520.fc43 100% |   0.0   B/s |   0.0   B |  00m00s
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[45/76] groff-base-0:1.23.0-11.fc44.i68 100% |   0.0   B/s |   0.0   B |  00m00s
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[46/76] perl-File-Temp-1:0.231.200-1.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[47/76] perl-HTTP-Tiny-0:0.090-521.fc43 100% |   0.0   B/s |   0.0   B |  00m00s
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[48/76] perl-IPC-Open3-0:1.24-520.fc43. 100% |   0.0   B/s |   0.0   B |  00m00s
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[49/76] perl-Pod-Simple-1:3.47-3.fc43.n 100% |   0.0   B/s |   0.0   B |  00m00s
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[50/76] perl-POSIX-0:2.23-520.fc43.i686 100% |   0.0   B/s |   0.0   B |  00m00s
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[51/76] perl-IO-Socket-SSL-0:2.095-2.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[52/76] perl-Net-SSLeay-0:1.94-11.fc43. 100% |   0.0   B/s |   0.0   B |  00m00s
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[53/76] perl-Time-Local-2:1.350-520.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[54/76] perl-File-Path-0:2.18-521.fc44. 100% |   0.0   B/s |   0.0   B |  00m00s
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[55/76] perl-Term-ANSIColor-0:5.01-521. 100% |   0.0   B/s |   0.0   B |  00m00s
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[56/76] perl-Term-Cap-0:1.18-520.fc43.n 100% |   0.0   B/s |   0.0   B |  00m00s
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[57/76] ncurses-0:6.5-8.20250614.fc44.i 100% |   0.0   B/s |   0.0   B |  00m00s
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[58/76] perl-Pod-Escapes-1:1.07-520.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[59/76] perl-Text-Tabs+Wrap-0:2024.001- 100% |   0.0   B/s |   0.0   B |  00m00s
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[60/76] perl-if-0:0.61.000-520.fc43.noa 100% |   0.0   B/s |   0.0   B |  00m00s
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[61/76] perl-locale-0:1.13-520.fc43.noa 100% |   0.0   B/s |   0.0   B |  00m00s
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[62/76] perl-AutoLoader-0:5.74-520.fc43 100% |   0.0   B/s |   0.0   B |  00m00s
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[63/76] perl-IO-Socket-IP-0:0.43-521.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[64/76] perl-URI-0:5.34-2.fc44.noarch   100% |   0.0   B/s |   0.0   B |  00m00s
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[65/76] perl-Data-Dumper-0:2.191-521.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[66/76] perl-MIME-Base32-0:1.303-24.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[67/76] perl-libnet-0:3.15-521.fc43.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[68/76] perl-B-0:1.89-520.fc43.i686     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[69/76] perl-Digest-MD5-0:2.59-520.fc43 100% |   0.0   B/s |   0.0   B |  00m00s
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[70/76] perl-FileHandle-0:2.05-520.fc43 100% |   0.0   B/s |   0.0   B |  00m00s
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[71/76] perl-Digest-0:1.20-520.fc43.noa 100% |   0.0   B/s |   0.0   B |  00m00s
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[72/76] annobin-plugin-gcc-0:13.04-3.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[73/76] gcc-plugin-annobin-0:16.0.0-0.3 100% |   0.0   B/s |   0.0   B |  00m00s
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[74/76] annobin-docs-0:13.04-3.fc44.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[75/76] perl-Fedora-VSP-0:0.001-37.fc43 100% | 400.7 KiB/s |  22.8 KiB |  00m00s
[76/76] perl-generators-0:1.16-8.fc43.n 100% | 245.5 KiB/s |  16.2 KiB |  00m00s
--------------------------------------------------------------------------------
[76/76] Total                           100% | 251.9 KiB/s |  39.0 KiB |  00m00s
Running transaction
[ 1/78] Verify package files            100% | 228.0   B/s |  76.0   B |  00m00s
[ 2/78] Prepare transaction             100% |   2.2 KiB/s |  76.0   B |  00m00s
[ 3/78] Installing libmpc-0:1.3.1-8.fc4 100% | 161.5 MiB/s | 165.4 KiB |  00m00s
[ 4/78] Installing annobin-docs-0:13.04 100% |  49.0 MiB/s | 100.3 KiB |  00m00s
[ 5/78] Installing kernel-headers-0:6.1 100% | 189.9 MiB/s |   7.0 MiB |  00m00s
[ 6/78] Installing glibc-devel-0:2.42.9 100% | 182.9 MiB/s |   2.4 MiB |  00m00s
[ 7/78] Installing libxcrypt-devel-0:4. 100% |  16.3 MiB/s |  33.3 KiB |  00m00s
[ 8/78] Installing libstdc++-devel-0:16 100% | 379.0 MiB/s |  29.9 MiB |  00m00s
[ 9/78] Installing cpp-0:16.0.0-0.3.fc4 100% | 318.5 MiB/s |  44.3 MiB |  00m00s
[10/78] Installing ncurses-0:6.5-8.2025 100% |  28.4 MiB/s | 610.3 KiB |  00m00s
[11/78] Installing groff-base-0:1.23.0- 100% | 113.7 MiB/s |   3.9 MiB |  00m00s
[12/78] Installing perl-Digest-0:1.20-5 100% |  36.2 MiB/s |  37.1 KiB |  00m00s
[13/78] Installing perl-Digest-MD5-0:2. 100% |  59.4 MiB/s |  60.9 KiB |  00m00s
[14/78] Installing perl-FileHandle-0:2. 100% |   0.0   B/s |   9.8 KiB |  00m00s
[15/78] Installing perl-B-0:1.89-520.fc 100% | 248.0 MiB/s | 508.0 KiB |  00m00s
[16/78] Installing perl-libnet-0:3.15-5 100% | 143.9 MiB/s | 294.7 KiB |  00m00s
[17/78] Installing perl-Data-Dumper-0:2 100% | 110.2 MiB/s | 112.8 KiB |  00m00s
[18/78] Installing perl-MIME-Base32-0:1 100% |   0.0   B/s |  32.2 KiB |  00m00s
[19/78] Installing perl-URI-0:5.34-2.fc 100% |  91.7 MiB/s | 281.8 KiB |  00m00s
[20/78] Installing perl-IO-Socket-IP-0: 100% |  99.8 MiB/s | 102.2 KiB |  00m00s
[21/78] Installing perl-AutoLoader-0:5. 100% |   0.0   B/s |  21.0 KiB |  00m00s
[22/78] Installing perl-IO-Socket-SSL-0 100% | 350.9 MiB/s | 718.6 KiB |  00m00s
[23/78] Installing perl-Net-SSLeay-0:1. 100% | 284.0 MiB/s |   1.4 MiB |  00m00s
[24/78] Installing perl-locale-0:1.13-5 100% |   0.0   B/s |   6.5 KiB |  00m00s
[25/78] Installing perl-if-0:0.61.000-5 100% |   0.0   B/s |   6.2 KiB |  00m00s
[26/78] Installing perl-Text-Tabs+Wrap- 100% |   0.0   B/s |  23.9 KiB |  00m00s
[27/78] Installing perl-Pod-Escapes-1:1 100% |   0.0   B/s |  25.9 KiB |  00m00s
[28/78] Installing perl-File-Path-0:2.1 100% |   0.0   B/s |  64.5 KiB |  00m00s
[29/78] Installing perl-Time-Local-2:1. 100% |  68.9 MiB/s |  70.6 KiB |  00m00s
[30/78] Installing perl-HTTP-Tiny-0:0.0 100% | 152.8 MiB/s | 156.4 KiB |  00m00s
[31/78] Installing perl-Pod-Simple-1:3. 100% | 280.7 MiB/s | 574.9 KiB |  00m00s
[32/78] Installing perl-POSIX-0:2.23-52 100% | 226.5 MiB/s | 231.9 KiB |  00m00s
[33/78] Installing perl-IPC-Open3-0:1.2 100% |   0.0   B/s |  28.5 KiB |  00m00s
[34/78] Installing perl-File-Temp-1:0.2 100% | 161.6 MiB/s | 165.5 KiB |  00m00s
[35/78] Installing perl-Term-Cap-0:1.18 100% |   0.0   B/s |  30.6 KiB |  00m00s
[36/78] Installing perl-Term-ANSIColor- 100% |  96.9 MiB/s |  99.2 KiB |  00m00s
[37/78] Installing perl-Class-Struct-0: 100% |   0.0   B/s |  25.9 KiB |  00m00s
[38/78] Installing perl-Pod-Perldoc-0:3 100% |  12.7 MiB/s | 169.2 KiB |  00m00s
[39/78] Installing perl-podlators-1:6.0 100% |  24.1 MiB/s | 321.4 KiB |  00m00s
[40/78] Installing perl-File-stat-0:1.1 100% |   0.0   B/s |  13.1 KiB |  00m00s
[41/78] Installing perl-Symbol-0:1.09-5 100% |   0.0   B/s |   7.3 KiB |  00m00s
[42/78] Installing perl-SelectSaver-0:1 100% |   0.0   B/s |   2.6 KiB |  00m00s
[43/78] Installing perl-Socket-4:2.040- 100% | 110.9 MiB/s | 113.5 KiB |  00m00s
[44/78] Installing perl-Pod-Usage-4:2.0 100% |   7.2 MiB/s |  87.9 KiB |  00m00s
[45/78] Installing perl-IO-0:1.55-520.f 100% | 143.4 MiB/s | 146.9 KiB |  00m00s
[46/78] Installing perl-base-0:2.27-520 100% |   0.0   B/s |  13.0 KiB |  00m00s
[47/78] Installing perl-Text-ParseWords 100% |   0.0   B/s |  14.6 KiB |  00m00s
[48/78] Installing perl-Fcntl-0:1.20-52 100% |   0.0   B/s |  41.2 KiB |  00m00s
[49/78] Installing perl-overloading-0:0 100% |   0.0   B/s |   5.6 KiB |  00m00s
[50/78] Installing perl-mro-0:1.29-520. 100% |   0.0   B/s |  37.9 KiB |  00m00s
[51/78] Installing perl-File-Basename-0 100% |   0.0   B/s |  14.6 KiB |  00m00s
[52/78] Installing perl-Getopt-Long-1:2 100% | 143.8 MiB/s | 147.2 KiB |  00m00s
[53/78] Installing perl-Storable-1:3.37 100% | 222.7 MiB/s | 228.0 KiB |  00m00s
[54/78] Installing perl-overload-0:1.40 100% |   0.0   B/s |  72.0 KiB |  00m00s
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Warning: skipped OpenPGP checks for 76 packages from repositories: copr_base, https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch
Complete!
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1753315200
Wrote: /builddir/build/SRPMS/lagan-2.0-45.fc44.src.rpm
Updating and loading repositories:
 Additional repo https_kojipkgs_fedorap 100% |  71.3 KiB/s |   3.5 KiB |  00m00s
 local                                  100% |  71.3 KiB/s |   3.5 KiB |  00m00s
 Copr repository                        100% |  31.3 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package "gcc-c++-16.0.0-0.3.fc44.i686" is already installed.
Package "make-1:4.4.1-11.fc43.i686" is already installed.
Package "perl-generators-1.16-8.fc43.noarch" is already installed.

Nothing to do.
Finish: build setup for lagan-2.0-45.fc44.src.rpm
Start: rpmbuild lagan-2.0-45.fc44.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1753315200
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.LZ5nTB
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.PCUVjB
+ umask 022
+ cd /builddir/build/BUILD/lagan-2.0-build
+ cd /builddir/build/BUILD/lagan-2.0-build
+ rm -rf lagan20
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/lagan20.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd lagan20
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (lagan20-chris.patch):
+ echo 'Patch #0 (lagan20-chris.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .chris --fuzz=0
patching file Readmes/README.FIRST
patching file Readmes/README.shuffle
patching file Readmes/README.chaos
patching file Readmes/README.lagan
patching file src/utils/scorealign.c
patching file src/utils/Glue.cpp
patching file src/utils/mrun.pl
patching file src/utils/mrunfile.pl
patching file src/utils/mrunpairs.pl
patching file src/utils/mviz.pl
patching file src/mlagan.c
patching file src/prolagan.c
patching file src/slagan-mfa.pl
patching file src/supermap.pl
patching file src/xmfa2mfa.pl
patching file utils/mrunpairs.pl
patching file utils/draft.pl
patching file utils/mrunfile.pl
patching file utils/mviz.pl
patching file utils/mrun.pl
patching file slagan.pl
patching file lagan.pl
patching file rechaos.pl
patching file slagan-mfa.pl
patching file supermap.pl
patching file xmfa2mfa.pl
patching file src/glocal/rightinfluence.cpp
patching file src/glocal/score.cpp
Patch #1 (lagan20-gcc10.patch):
+ echo 'Patch #1 (lagan20-gcc10.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .gcc10 --fuzz=0
patching file src/multial.c
patching file src/order.c
patching file src/utils/scorecontigs.c
Hunk #1 succeeded at 258 (offset -1 lines).
Patch #2 (lagan-c99.patch):
+ echo 'Patch #2 (lagan-c99.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0
patching file src/multial.h
patching file src/order.c
+ sed -i $'s/^CC .*$/CC = gcc $(RPM_OPT_FLAGS)/;\n        s/^CPP .*$/CPP = g++ $(RPM_OPT_FLAGS)/' Makefile
+ sed -i 's|getenv ("LAGAN_DIR")|"/usr/lib/lagan"|g' src/anchors.c src/diagmatrix.c src/fchaos.c src/filebuffer.c src/global.c src/mempage.c src/mlagan.c src/multial.c src/order.c src/prolagan.c src/skiplist.c src/sortlist.c src/thrtrie.c src/translate.c src/utils/bin2bl.c src/utils/bin2mf.c src/utils/cextract.c src/utils/contigorder.c src/utils/cstat.c src/utils/fa2xfa.c src/utils/getbounds.c src/utils/getcontigpos.c src/utils/getlength.c src/utils/getoverlap.c src/utils/overlay.c src/utils/rc.c src/utils/scorealign.c src/utils/scorecontigs.c src/utils/seqmerge.c
+ sed -i 's|getenv ("LAGAN_DIR")|"/usr/lib/lagan"|g' src/utils/Glue.cpp src/utils/dotplot.cpp
+ sed -i 's|$ENV{LAGAN_DIR}|"/usr/lib/lagan"|g' anal_gloc.pl lagan.pl rechaos.pl slagan-mfa.pl slagan.pl supermap.pl xmfa2mfa.pl src/anal_gloc.pl src/lagan.pl src/rechaos.pl src/slagan-mfa.pl src/slagan.pl src/supermap.pl src/xmfa2mfa.pl utils/cmerge2.pl utils/draft.pl utils/flipchaos.pl utils/mextract.pl utils/mf2bin.pl utils/mpretty.pl utils/mproject.pl utils/mrun.pl utils/mrunfile.pl utils/mrunpairs.pl utils/msplit.pl utils/mviz.pl src/utils/cmerge2.pl src/utils/draft.pl src/utils/mextract.pl src/utils/mf2bin.pl src/utils/mpretty.pl src/utils/mproject.pl src/utils/mrun.pl src/utils/mrunfile.pl src/utils/mrunpairs.pl src/utils/mviz.pl
+ sed -i 's|$LAGAN_DIR|/usr/lib/lagan|g' Readmes/README.shuffle src/anchors.c src/diagmatrix.c src/fchaos.c src/filebuffer.c src/global.c src/mempage.c src/mlagan.c src/multial.c src/order.c src/prolagan.c src/skiplist.c src/sortlist.c src/thrtrie.c src/translate.c
+ sed -i s/getline/GetLine/g src/anchors.c
+ sed -i 's/^inline /inline __attribute__ ((always_inline)) /' src/fchaos.c
+ sed -i '/<stdio.h>/a#include <ctype.h>' src/filebuffer.c
+ sed -i '/<stdio.h>/a#include <ctype.h>' src/utils/scorecontigs.c
+ sed -i '/<stdio.h>/a#include <ctype.h>' src/utils/overlay.c
+ sed -i '/<stdio.h>/a#include <ctype.h>' src/utils/cstat.c
+ sed -i 's/^int indeces/extern int indeces/' src/thrtrie.h
+ sed -i '/^int nnodes=0;/aint indeces[256];' src/thrtrie.c
+ rm prolagan
+ chmod -x src/glocal/Makefile src/glocal/default.score src/glocal/glocal src/glocal/glocal.cpp src/glocal/glocal.h src/glocal/io.cpp src/glocal/io.h src/glocal/leftinfluence.cpp src/glocal/leftinfluence.h src/glocal/rightinfluence.cpp src/glocal/rightinfluence.cpp.chris src/glocal/rightinfluence.h src/glocal/score.cpp src/glocal/score.cpp.chris src/glocal/score.h src/glocal/structs.h src/glocal/test.score
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.88imXD
+ umask 022
+ cd /builddir/build/BUILD/lagan-2.0-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd lagan20
+ make -j4 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu' 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu'
(cd src; make)
make[1]: Entering directory '/builddir/build/BUILD/lagan-2.0-build/lagan20/src'
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../anchors anchors.c skiplist.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../chaos fchaos.c thrtrie.c skiplist.c global.c translate.c filebuffer.c -lm -DCHAOS__FLAG
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../order order.c diagmatrix.c filebuffer.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../mlagan mlagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG
anchors.c: In function ‘hptrcomp’:
anchors.c:49:7: warning: unused variable ‘jt’ [-Wunused-variable]
   49 |   int jt = ((hptr*)p2)->isstart;
      |       ^~
anchors.c: In function ‘doOutput’:
anchors.c:171:17: warning: unused variable ‘bestscore’ [-Wunused-variable]
  171 |   int chl=0, i, bestscore=-1;
      |                 ^~~~~~~~~
anchors.c:171:14: warning: unused variable ‘i’ [-Wunused-variable]
  171 |   int chl=0, i, bestscore=-1;
      |              ^
anchors.c:171:7: warning: variable ‘chl’ set but not used [-Wunused-but-set-variable=]
  171 |   int chl=0, i, bestscore=-1;
      |       ^~~
anchors.c:168:7: warning: variable ‘len’ set but not used [-Wunused-but-set-variable=]
  168 |   int len;
      |       ^~~
anchors.c: In function ‘GetLine’:
anchors.c:232:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  232 |   fgets(temp, 1024, infile);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
order.c: In function ‘readAncFile’:
order.c:238:35: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  238 |     if ((tt->seq1start >= s1start && tt->seq1end <= s1end || s1start == 0 && s1end == 0) &&
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
order.c:239:35: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  239 |         (tt->seq2start >= s2start && tt->seq2end <= s2end || s2start == 0 && s2end == 0)){
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
order.c: In function ‘mkBarrel’:
order.c:275:7: warning: unused variable ‘incr’ [-Wunused-variable]
  275 |   int incr;
      |       ^~~~
order.c: In function ‘getChain’:
order.c:487:7: warning: unused variable ‘temp’ [-Wunused-variable]
  487 |   int temp;
      |       ^~~~
order.c: In function ‘saveNeck’:
order.c:562:6: warning: unused variable ‘second’ [-Wunused-variable]
  562 |     *second = DMgetDiagStart(mydm, neckdiag, &size2, &x2, &y2);
      |      ^~~~~~
order.c:561:9: warning: unused variable ‘first’ [-Wunused-variable]
  561 |   alel *first = DMgetDiagStart(mydm, neckdiag-1, &size1, &x1, &y1),
      |         ^~~~~
order.c: In function ‘joinAligns’:
order.c:587:10: warning: unused variable ‘n’ [-Wunused-variable]
  587 |   align *n = a->nextalign, *t;
      |          ^
order.c: In function ‘printBinAlign’:
order.c:719:23: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  719 |       left = lets[seq1[s1++]];
      |                   ~~~~^~~~~~
order.c:721:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  721 |       right = lets[seq2[s2++]];
      |                    ~~~~^~~~~~
order.c: In function ‘printMFAAlign’:
order.c:774:27: warning: unused variable ‘nlets’ [-Wunused-variable]
  774 |   int nm=0, nga=0, ngb=0, nlets=0;
      |                           ^~~~~
order.c:774:20: warning: variable ‘ngb’ set but not used [-Wunused-but-set-variable=]
  774 |   int nm=0, nga=0, ngb=0, nlets=0;
      |                    ^~~
order.c:774:13: warning: variable ‘nga’ set but not used [-Wunused-but-set-variable=]
  774 |   int nm=0, nga=0, ngb=0, nlets=0;
      |             ^~~
order.c:774:7: warning: unused variable ‘nm’ [-Wunused-variable]
  774 |   int nm=0, nga=0, ngb=0, nlets=0;
      |       ^~
order.c: In function ‘printXMFAAlign’:
order.c:806:27: warning: unused variable ‘nlets’ [-Wunused-variable]
  806 |   int nm=0, nga=0, ngb=0, nlets=0;
      |                           ^~~~~
order.c:806:20: warning: variable ‘ngb’ set but not used [-Wunused-but-set-variable=]
  806 |   int nm=0, nga=0, ngb=0, nlets=0;
      |                    ^~~
order.c:806:13: warning: variable ‘nga’ set but not used [-Wunused-but-set-variable=]
  806 |   int nm=0, nga=0, ngb=0, nlets=0;
      |             ^~~
order.c:806:7: warning: unused variable ‘nm’ [-Wunused-variable]
  806 |   int nm=0, nga=0, ngb=0, nlets=0;
      |       ^~
order.c: In function ‘readfile’:
order.c:62:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   62 |   fgets(temp, 255, input);
      |   ^~~~~~~~~~~~~~~~~~~~~~~
order.c: In function ‘readSubstMatrix’:
order.c:146:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  146 |       fscanf (file, "%d", &(substmatrix[(unsigned char) symbs[i]][(unsigned char) symbs[j]]));
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
order.c:150:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  150 |   fscanf (file, "%d", &gapstart);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
order.c:151:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  151 |   fscanf (file, "%d", &gapcont);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fchaos.c: In function ‘removeDups’:
fchaos.c:302:24: warning: unused variable ‘temp’ [-Wunused-variable]
  302 |   hll *i, *j, *jprev, *temp;
      |                        ^~~~
fchaos.c: In function ‘readfile’:
fchaos.c:357:25: warning: too many arguments for format [-Wformat-extra-args]
  357 |         fprintf(stderr, "WARNING %c converted to N\n", currchar, alpha);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fchaos.c: In function ‘chain’:
fchaos.c:401:16: warning: unused variable ‘d2’ [-Wunused-variable]
  401 |   int i, d1=0, d2=0;
      |                ^~
fchaos.c:401:10: warning: unused variable ‘d1’ [-Wunused-variable]
  401 |   int i, d1=0, d2=0;
      |          ^~
fchaos.c:401:7: warning: unused variable ‘i’ [-Wunused-variable]
  401 |   int i, d1=0, d2=0;
      |       ^
fchaos.c: In function ‘findPrev’:
fchaos.c:440:7: warning: unused variable ‘doneset’ [-Wunused-variable]
  440 |   int doneset = 0;
      |       ^~~~~~~
order.c: In function ‘printBinAlign’:
order.c:726:1: warning: control reaches end of non-void function [-Wreturn-type]
  726 | }
      | ^
order.c: In function ‘printTextAlign’:
order.c:770:1: warning: control reaches end of non-void function [-Wreturn-type]
  770 | }
      | ^
fchaos.c: In function ‘doAlgo’:
order.c: In function ‘printMFAAlign’:
fchaos.c:543:24: warning: unused variable ‘bestdbaseloc’ [-Wunused-variable]
  543 |   int bestqueryloc=-1, bestdbaseloc=-1, numhits;
      |                        ^~~~~~~~~~~~
fchaos.c:543:7: warning: unused variable ‘bestqueryloc’ [-Wunused-variable]
  543 |   int bestqueryloc=-1, bestdbaseloc=-1, numhits;
      |       ^~~~~~~~~~~~
fchaos.c:542:9: warning: unused variable ‘bestscore’ [-Wunused-variable]
  542 |   float bestscore=-1, baseval;
      |         ^~~~~~~~~
order.c:802:1: warning: control reaches end of non-void function [-Wreturn-type]
  802 | }
      | ^
order.c: In function ‘printXMFAAlign’:
order.c:834:1: warning: control reaches end of non-void function [-Wreturn-type]
  834 | }
      | ^
fchaos.c: In function ‘main’:
fchaos.c:885:7: warning: unused variable ‘i’ [-Wunused-variable]
  885 |   int i;
      |       ^
fchaos.c: In function ‘saveScore’:
fchaos.c:970:7: warning: unused variable ‘temp’ [-Wunused-variable]
  970 |   int temp;
      |       ^~~~
fchaos.c: In function ‘savenfreeLList’:
fchaos.c:1137:9: warning: variable ‘j’ set but not used [-Wunused-but-set-variable=]
 1137 |   int i,j;
      |         ^
mlagan.c: In function ‘hptrcomp’:
mlagan.c:38:7: warning: unused variable ‘jt’ [-Wunused-variable]
   38 |   int jt = ((hptr*)p2)->isstart;
      |       ^~
mlagan.c: In function ‘readfile’:
mlagan.c:93:25: warning: too many arguments for format [-Wformat-extra-args]
   93 |         fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fchaos.c: In function ‘readfile’:
mlagan.c: In function ‘getAnchsFromFile’:
fchaos.c:344:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  344 |   fgets(temp, 255, input);
      |   ^~~~~~~~~~~~~~~~~~~~~~~
mlagan.c:163:12: warning: variable ‘j’ set but not used [-Wunused-but-set-variable=]
  163 |   int i=0, j=0;
      |            ^
mlagan.c:161:29: warning: unused variable ‘first’ [-Wunused-variable]
  161 |   hll *myres = 0, *tt = 0, *first = 0;
      |                             ^~~~~
mlagan.c: In function ‘generateAnchors’:
mlagan.c:213:8: warning: unused variable ‘flip’ [-Wunused-variable]
  213 |   char flip = 0;
      |        ^~~~
mlagan.c:211:10: warning: unused variable ‘temp’ [-Wunused-variable]
  211 |   align* temp;
      |          ^~~~
fchaos.c: In function ‘readSubstMatrix’:
mlagan.c: In function ‘remakeHLL’:
mlagan.c:310:10: warning: unused variable ‘bestscore’ [-Wunused-variable]
  310 |   int i, bestscore=-1;
      |          ^~~~~~~~~
mlagan.c:310:7: warning: unused variable ‘i’ [-Wunused-variable]
  310 |   int i, bestscore=-1;
      |       ^
mlagan.c:309:20: warning: unused variable ‘t3’ [-Wunused-variable]
  309 |   hll *temp, *t2, *t3;
      |                    ^~
mlagan.c:309:15: warning: unused variable ‘t2’ [-Wunused-variable]
  309 |   hll *temp, *t2, *t3;
      |               ^~
mlagan.c:307:7: warning: unused variable ‘len’ [-Wunused-variable]
  307 |   int len;
      |       ^~~
fchaos.c:622:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fscanf (file, "%d", &(substmatrix[(unsigned char) symbs[i]][(unsigned char) symbs[j]]));
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fchaos.c:627:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  627 |   fscanf (file, "%d", &gappenstart);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fchaos.c:628:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  628 |   fscanf (file, "%d", &gappenext);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mlagan.c: In function ‘iterativeImprovement’:
mlagan.c:485:10: warning: unused variable ‘readd’ [-Wunused-variable]
  485 |   align *readd, *old, *new;
      |          ^~~~~
mlagan.c:483:12: warning: unused variable ‘oldscore’ [-Wunused-variable]
  483 |   int i=0, oldscore, cutoff;
      |            ^~~~~~~~
mlagan.c: In function ‘treeToRPN’:
mlagan.c:528:16: warning: unused variable ‘j’ [-Wunused-variable]
  528 |   int i=0; int j, k;
      |                ^
mlagan.c: In function ‘graphCollapsal’:
mlagan.c:674:9: warning: variable ‘score’ set but not used [-Wunused-but-set-variable=]
  674 |   float score = 0, count = 0;
      |         ^~~~~
mlagan.c: In function ‘main’:
mlagan.c:942:8: warning: unused variable ‘command’ [-Wunused-variable]
  942 |   char command[256];
      |        ^~~~~~~
mlagan.c:941:24: warning: unused variable ‘y’ [-Wunused-variable]
  941 |   int i = 1, j = 1, x, y;
      |                        ^
mlagan.c:941:21: warning: unused variable ‘x’ [-Wunused-variable]
  941 |   int i = 1, j = 1, x, y;
      |                     ^
mlagan.c:939:14: warning: unused variable ‘seqfile’ [-Wunused-variable]
  939 |   FileBuffer seqfile;
      |              ^~~~~~~
mlagan.c: In function ‘readfile’:
mlagan.c:79:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |   fgets(temp, 255, input);
      |   ^~~~~~~~~~~~~~~~~~~~~~~
mlagan.c: In function ‘treeToRPN’:
mlagan.c:565:1: warning: control reaches end of non-void function [-Wreturn-type]
  565 | }
      | ^
anchors.c: In function ‘findBestChain’:
anchors.c:164:10: warning: ‘bestptr’ may be used uninitialized [-Wmaybe-uninitialized]
  164 |   return (hll*)bestptr->myelem;
      |          ^~~~~~~~~~~~~~~~~~~~~
anchors.c:126:15: note: ‘bestptr’ was declared here
  126 |   sle* help, *bestptr;
      |               ^~~~~~~
skiplist.c: In function ‘printSLE’:
skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=]
   12 |   printf("  %d   %x\n", tbp->index, tbp->myelem);
      |                  ~^                 ~~~~~~~~~~~
      |                   |                    |
      |                   unsigned int         void *
      |                  %p
skiplist.c: In function ‘makeSkLst’:
skiplist.c:33:7: warning: unused variable ‘i’ [-Wunused-variable]
   33 |   int i;
      |       ^
skiplist.c: In function ‘SLinsert’:
skiplist.c:100:37: warning: unused variable ‘tbe’ [-Wunused-variable]
  100 |   sle* prev = SLfind(trgt, index), *tbe;
      |                                     ^~~
mlagan.c: In function ‘buildTree’:
mlagan.c:662:8: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
  662 |     if (names[i] != result)
      |        ^
mlagan.c:599:9: note: ‘result’ was declared here
  599 |   char *result, *temp;
      |         ^~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../prolagan prolagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG
prolagan.c: In function ‘hptrcomp’:
prolagan.c:41:7: warning: unused variable ‘jt’ [-Wunused-variable]
   41 |   int jt = ((hptr*)p2)->isstart;
      |       ^~
prolagan.c: In function ‘readfile’:
prolagan.c:93:25: warning: too many arguments for format [-Wformat-extra-args]
   93 |         fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
prolagan.c: In function ‘appendAlignProfile’:
prolagan.c:163:9: warning: unused variable ‘j’ [-Wunused-variable]
  163 |   int i,j,k;
      |         ^
prolagan.c: In function ‘readProfile’:
prolagan.c:198:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  198 |   while ( myseq = FileRead( with_gaps,0,0,VER_MLAGAN )) {
      |           ^~~~~
prolagan.c: In function ‘getAnchsFromFile’:
prolagan.c:248:12: warning: variable ‘j’ set but not used [-Wunused-but-set-variable=]
  248 |   int i=0, j=0;
      |            ^
prolagan.c:246:29: warning: unused variable ‘first’ [-Wunused-variable]
  246 |   hll *myres = 0, *tt = 0, *first = 0;
      |                             ^~~~~
prolagan.c: In function ‘generateAnchors’:
prolagan.c:298:8: warning: unused variable ‘flip’ [-Wunused-variable]
  298 |   char flip = 0;
      |        ^~~~
prolagan.c:296:10: warning: unused variable ‘temp’ [-Wunused-variable]
  296 |   align* temp;
      |          ^~~~
prolagan.c: In function ‘remakeHLL’:
prolagan.c:395:10: warning: unused variable ‘bestscore’ [-Wunused-variable]
  395 |   int i, bestscore=-1;
      |          ^~~~~~~~~
prolagan.c:395:7: warning: unused variable ‘i’ [-Wunused-variable]
  395 |   int i, bestscore=-1;
      |       ^
prolagan.c:394:20: warning: unused variable ‘t3’ [-Wunused-variable]
  394 |   hll *temp, *t2, *t3;
      |                    ^~
prolagan.c:394:15: warning: unused variable ‘t2’ [-Wunused-variable]
  394 |   hll *temp, *t2, *t3;
      |               ^~
prolagan.c:392:7: warning: unused variable ‘len’ [-Wunused-variable]
  392 |   int len;
      |       ^~~
prolagan.c: In function ‘processAnchors’:
prolagan.c:539:36: warning: unused variable ‘uni’ [-Wunused-variable]
  539 |   align *first, *second, *result, *uni;
      |                                    ^~~
prolagan.c: In function ‘iterativeImprovement’:
prolagan.c:587:10: warning: unused variable ‘readd’ [-Wunused-variable]
  587 |   align *readd, *old, *new;
      |          ^~~~~
prolagan.c:585:12: warning: unused variable ‘oldscore’ [-Wunused-variable]
  585 |   int i=0, oldscore, cutoff;
      |            ^~~~~~~~
prolagan.c: In function ‘treeToRPN’:
prolagan.c:630:16: warning: unused variable ‘j’ [-Wunused-variable]
  630 |   int i=0; int j, k;
      |                ^
prolagan.c: In function ‘main’:
prolagan.c:966:8: warning: unused variable ‘table’ [-Wunused-variable]
  966 |   hll* table[MAX_SEQ][MAX_SEQ];
      |        ^~~~~
prolagan.c:960:8: warning: unused variable ‘command’ [-Wunused-variable]
  960 |   char command[256];
      |        ^~~~~~~
prolagan.c:954:14: warning: unused variable ‘seqfile’ [-Wunused-variable]
  954 |   FileBuffer seqfile;
      |              ^~~~~~~
prolagan.c: In function ‘readfile’:
prolagan.c:79:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |   fgets(temp, 255, input);
      |   ^~~~~~~~~~~~~~~~~~~~~~~
diagmatrix.c: In function ‘DMsetPtr’:
diagmatrix.c:155:8: warning: unused variable ‘res’ [-Wunused-variable]
  155 |   char res;
      |        ^~~
diagmatrix.c:154:19: warning: unused variable ‘loc’ [-Wunused-variable]
  154 |   int dn = x+y-1, loc;
      |                   ^~~
prolagan.c: In function ‘treeToRPN’:
prolagan.c:667:1: warning: control reaches end of non-void function [-Wreturn-type]
  667 | }
      | ^
multial.c: In function ‘getAnchsFromAlign’:
multial.c:104:9: warning: unused variable ‘peakfrac’ [-Wunused-variable]
  104 |   float peakfrac;
      |         ^~~~~~~~
multial.c:103:19: warning: unused variable ‘isfrst’ [-Wunused-variable]
  103 |   char ingap = 0, isfrst = 1;
      |                   ^~~~~~
multial.c:99:30: warning: unused variable ‘peakscore’ [-Wunused-variable]
   99 |   int currscore=0, oldscore, peakscore;
      |                              ^~~~~~~~~
multial.c:99:20: warning: unused variable ‘oldscore’ [-Wunused-variable]
   99 |   int currscore=0, oldscore, peakscore;
      |                    ^~~~~~~~
multial.c: In function ‘unifyAlign’:
multial.c:188:28: warning: unused variable ‘tgc’ [-Wunused-variable]
  188 |   int s1 = 0, s2 = 0, tgs, tgc;
      |                            ^~~
multial.c:188:23: warning: unused variable ‘tgs’ [-Wunused-variable]
  188 |   int s1 = 0, s2 = 0, tgs, tgc;
      |                       ^~~
multial.c:187:19: warning: unused variable ‘brcount’ [-Wunused-variable]
  187 |   int i,j,k, cbc, brcount;
      |                   ^~~~~~~
multial.c:187:14: warning: unused variable ‘cbc’ [-Wunused-variable]
  187 |   int i,j,k, cbc, brcount;
      |              ^~~
multial.c: In function ‘getChain’:
multial.c:247:7: warning: unused variable ‘temp’ [-Wunused-variable]
  247 |   int temp;
      |       ^~~~
multial.c: In function ‘saveNeck’:
multial.c:358:6: warning: unused variable ‘second’ [-Wunused-variable]
  358 |     *second = DMgetDiagStart(mydm, neckdiag, &size2, &x2, &y2);
      |      ^~~~~~
multial.c:357:9: warning: unused variable ‘first’ [-Wunused-variable]
  357 |   alel *first = DMgetDiagStart(mydm, neckdiag-1, &size1, &x1, &y1),
      |         ^~~~~
multial.c: In function ‘joinAligns’:
multial.c:384:7: warning: variable ‘i’ set but not used [-Wunused-but-set-variable=]
  384 |   int i =0;
      |       ^
multial.c:381:10: warning: unused variable ‘n’ [-Wunused-variable]
  381 |   align *n = a->nextalign, *t;
      |          ^
multial.c: In function ‘openGap’:
multial.c:594:25: warning: unused variable ‘i’ [-Wunused-variable]
  594 |   int alopen, pen, sav, i;
      |                         ^
multial.c:594:15: warning: unused variable ‘pen’ [-Wunused-variable]
  594 |   int alopen, pen, sav, i;
      |               ^~~
multial.c: In function ‘mkBarrel’:
multial.c:615:7: warning: unused variable ‘incr’ [-Wunused-variable]
  615 |   int incr;
      |       ^~~~
multial.c: In function ‘doNW’:
multial.c:811:20: warning: variable ‘oldneck’ set but not used [-Wunused-but-set-variable=]
  811 |   int numNecks =0, oldneck =0;
      |                    ^~~~~~~
multial.c:811:7: warning: variable ‘numNecks’ set but not used [-Wunused-but-set-variable=]
  811 |   int numNecks =0, oldneck =0;
      |       ^~~~~~~~
multial.c:808:8: warning: unused variable ‘rh’ [-Wunused-variable]
  808 |   char rh, ptr=0, isneck;
      |        ^~
multial.c:807:14: warning: unused variable ‘b’ [-Wunused-variable]
  807 |   align* a, *b;
      |              ^
multial.c:805:11: warning: unused variable ‘prevgap’ [-Wunused-variable]
  805 |   int tt, prevgap;
      |           ^~~~~~~
multial.c:805:7: warning: unused variable ‘tt’ [-Wunused-variable]
  805 |   int tt, prevgap;
      |       ^~
multial.c:804:7: warning: unused variable ‘gapend’ [-Wunused-variable]
  804 |   int gapend[3];
      |       ^~~~~~
multial.c: In function ‘removeSeqByName’:
multial.c:1062:8: warning: variable ‘removed’ set but not used [-Wunused-but-set-variable=]
 1062 |   seq *removed;
      |        ^~~~~~~
multial.c: In function ‘getSeqNum’:
multial.c:1073:8: warning: unused variable ‘removed’ [-Wunused-variable]
 1073 |   seq *removed;
      |        ^~~~~~~
multial.c: In function ‘remapHLLs’:
multial.c:1262:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1262 |         if (which == 0 && anchs->seq1end - anchs->seq1start < ANCHOR_LENGTH_CUTOFF ||
      |                        ^
multial.c:1104:43: warning: unused variable ‘olen’ [-Wunused-variable]
 1104 |   int mybp, i, *searchint, stmybp, mylen, olen, osize;
      |                                           ^~~~
multial.c: In function ‘hllJoin’:
multial.c:1352:10: warning: unused variable ‘j’ [-Wunused-variable]
 1352 |   int i, j;
      |          ^
multial.c:1352:7: warning: unused variable ‘i’ [-Wunused-variable]
 1352 |   int i, j;
      |       ^
multial.c: In function ‘minHLL’:
multial.c:1368:10: warning: unused variable ‘j’ [-Wunused-variable]
 1368 |   int i, j;
      |          ^
multial.c: In function ‘mergeHLLs’:
multial.c:1408:10: warning: unused variable ‘j’ [-Wunused-variable]
 1408 |   int i, j, mscore;
      |          ^
multial.c:1408:7: warning: unused variable ‘i’ [-Wunused-variable]
 1408 |   int i, j, mscore;
      |       ^
multial.c: In function ‘printTextAlign’:
multial.c:1466:7: warning: unused variable ‘nlets’ [-Wunused-variable]
 1466 |   int nlets=0;
      |       ^~~~~
multial.c:1465:13: warning: unused variable ‘s2’ [-Wunused-variable]
 1465 |   int s1=0, s2=0, c, k, i;
      |             ^~
multial.c:1465:7: warning: unused variable ‘s1’ [-Wunused-variable]
 1465 |   int s1=0, s2=0, c, k, i;
      |       ^~
multial.c: In function ‘printFASTAAlign’:
multial.c:1525:7: warning: unused variable ‘nlets’ [-Wunused-variable]
 1525 |   int nlets=0;
      |       ^~~~~
multial.c:1524:13: warning: unused variable ‘s2’ [-Wunused-variable]
 1524 |   int s1=0, s2=0, c, k, i;
      |             ^~
multial.c:1524:7: warning: unused variable ‘s1’ [-Wunused-variable]
 1524 |   int s1=0, s2=0, c, k, i;
      |       ^~
multial.c: In function ‘printXMFAAlign’:
multial.c:1553:7: warning: unused variable ‘nlets’ [-Wunused-variable]
 1553 |   int nlets=0;
      |       ^~~~~
multial.c:1552:13: warning: unused variable ‘s2’ [-Wunused-variable]
 1552 |   int s1=0, s2=0, c, k, i;
      |             ^~
multial.c:1552:7: warning: unused variable ‘s1’ [-Wunused-variable]
 1552 |   int s1=0, s2=0, c, k, i;
      |       ^~
multial.c: At top level:
multial.c:581:10: warning: ‘gapcache’ is static but used in inline function ‘endGap2’ which is not static
  581 |   return gapcache[(v((a->numseq - a->cnts[CNTS_GS][ai] - a->cnts[CNTS_GC][ai]) + b->cnts[CNTS_GE][bi])<<12) |
      |          ^~~~~~~~
multial.c:576:10: warning: ‘gapcache’ is static but used in inline function ‘endGap1’ which is not static
  576 |   return gapcache[(v((b->numseq - b->cnts[CNTS_GS][bi] - b->cnts[CNTS_GC][bi]) + a->cnts[CNTS_GE][ai]) << 12) |
      |          ^~~~~~~~
multial.c:570:10: warning: ‘gapcache’ is static but used in inline function ‘endGap0’ which is not static
  570 |   return gapcache[(v(a->cnts[CNTS_GE][ai]+b->cnts[CNTS_GE][bi])<<12) |
      |          ^~~~~~~~
multial.c:563:10: warning: ‘matchcache’ is static but used in inline function ‘scoreOpp’ which is not static
  563 |   return matchcache[v(other->cnts[0][ow]) |
      |          ^~~~~~~~~~
multial.c: In function ‘scoreLocal’:
multial.c:84:1: warning: control reaches end of non-void function [-Wreturn-type]
   84 | }
      | ^
multial.c: In function ‘readSubstMatrix’:
multial.c:478:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  478 |       fscanf (file, "%d", &k);
      |       ^~~~~~~~~~~~~~~~~~~~~~~
multial.c:486:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  486 |   fscanf (file, "%d", &gapstart);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multial.c:487:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  487 |   fscanf (file, "%d", &gapcont);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multial.c: In function ‘removeSeqByName’:
multial.c:1068:1: warning: control reaches end of non-void function [-Wreturn-type]
 1068 | }
      | ^
multial.c: In function ‘printTextAlign’:
multial.c:1521:1: warning: control reaches end of non-void function [-Wreturn-type]
 1521 | }
      | ^
multial.c: In function ‘printFASTAAlign’:
multial.c:1549:1: warning: control reaches end of non-void function [-Wreturn-type]
 1549 | }
      | ^
multial.c: In function ‘printXMFAAlign’:
multial.c:1579:1: warning: control reaches end of non-void function [-Wreturn-type]
 1579 | }
      | ^
fchaos.c: In function ‘doTranslated’:
fchaos.c:865:7: warning: ‘temp’ may be used uninitialized [-Wmaybe-uninitialized]
  865 |       procPairs(currquery, currdbase);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fchaos.c:805:32: note: ‘temp’ was declared here
  805 |   seq *currquery, *currdbase, *temp;
      |                                ^~~~
fchaos.c: In function ‘main’:
fchaos.c:955:7: warning: ‘temp’ may be used uninitialized [-Wmaybe-uninitialized]
  955 |       procPairs(currquery, currdbase);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fchaos.c:882:32: note: ‘temp’ was declared here
  882 |   seq *currquery, *currdbase, *temp;
      |                                ^~~~
thrtrie.c: In function ‘makeAlpha’:
thrtrie.c:34:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
   34 |       indeces[*alpha] = i;
      |               ^~~~~~
thrtrie.c:36:19: warning: array subscript has type ‘char’ [-Wchar-subscripts]
   36 |     else indeces [*alpha] = i++;
      |                   ^~~~~~
thrtrie.c: In function ‘lookup’:
thrtrie.c:43:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
   43 |   return indeces[c];
      |                 ^
thrtrie.c: In function ‘insertString’:
thrtrie.c:175:10: warning: unused variable ‘j’ [-Wunused-variable]
  175 |   int i, j, wordlen = root->height, letprev, letcurr;
      |          ^
In file included from thrtrie.c:14:
mempage.c: In function ‘MPallfree’:
mempage.c:48:1: warning: control reaches end of non-void function [-Wreturn-type]
   48 | }
      | ^
skiplist.c: In function ‘printSLE’:
skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=]
   12 |   printf("  %d   %x\n", tbp->index, tbp->myelem);
      |                  ~^                 ~~~~~~~~~~~
      |                   |                    |
      |                   unsigned int         void *
      |                  %p
skiplist.c: In function ‘makeSkLst’:
skiplist.c:33:7: warning: unused variable ‘i’ [-Wunused-variable]
   33 |   int i;
      |       ^
skiplist.c: In function ‘SLinsert’:
skiplist.c:100:37: warning: unused variable ‘tbe’ [-Wunused-variable]
  100 |   sle* prev = SLfind(trgt, index), *tbe;
      |                                     ^~~
global.c: In function ‘ismatch’:
global.c:12:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
   12 |   return indeces[a] == indeces[b];
      |                 ^
multial.c: In function ‘getAnchsFromAlign’:
multial.c:104:9: warning: unused variable ‘peakfrac’ [-Wunused-variable]
  104 |   float peakfrac;
      |         ^~~~~~~~
multial.c:103:19: warning: unused variable ‘isfrst’ [-Wunused-variable]
  103 |   char ingap = 0, isfrst = 1;
      |                   ^~~~~~
multial.c:99:30: warning: unused variable ‘peakscore’ [-Wunused-variable]
   99 |   int currscore=0, oldscore, peakscore;
      |                              ^~~~~~~~~
multial.c:99:20: warning: unused variable ‘oldscore’ [-Wunused-variable]
   99 |   int currscore=0, oldscore, peakscore;
      |                    ^~~~~~~~
global.c:12:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
   12 |   return indeces[a] == indeces[b];
      |                               ^
multial.c: In function ‘unifyAlign’:
multial.c:188:28: warning: unused variable ‘tgc’ [-Wunused-variable]
  188 |   int s1 = 0, s2 = 0, tgs, tgc;
      |                            ^~~
multial.c:188:23: warning: unused variable ‘tgs’ [-Wunused-variable]
  188 |   int s1 = 0, s2 = 0, tgs, tgc;
      |                       ^~~
multial.c:187:19: warning: unused variable ‘brcount’ [-Wunused-variable]
  187 |   int i,j,k, cbc, brcount;
      |                   ^~~~~~~
multial.c:187:14: warning: unused variable ‘cbc’ [-Wunused-variable]
  187 |   int i,j,k, cbc, brcount;
      |              ^~~
global.c: In function ‘global’:
multial.c: In function ‘getChain’:
multial.c:247:7: warning: unused variable ‘temp’ [-Wunused-variable]
  247 |   int temp;
      |       ^~~~
multial.c: In function ‘saveNeck’:
global.c:34:31: warning: unused variable ‘score’ [-Wunused-variable]
   34 |   int mm = end2 - start2 + 1, score;
      |                               ^~~~~
multial.c:358:6: warning: unused variable ‘second’ [-Wunused-variable]
  358 |     *second = DMgetDiagStart(mydm, neckdiag, &size2, &x2, &y2);
      |      ^~~~~~
multial.c:357:9: warning: unused variable ‘first’ [-Wunused-variable]
  357 |   alel *first = DMgetDiagStart(mydm, neckdiag-1, &size1, &x1, &y1),
      |         ^~~~~
multial.c: In function ‘joinAligns’:
multial.c:384:7: warning: variable ‘i’ set but not used [-Wunused-but-set-variable=]
  384 |   int i =0;
      |       ^
global.c: In function ‘printalign’:
global.c:172:1: warning: control reaches end of non-void function [-Wreturn-type]
  172 | }
      | ^
multial.c:381:10: warning: unused variable ‘n’ [-Wunused-variable]
  381 |   align *n = a->nextalign, *t;
      |          ^
multial.c: In function ‘openGap’:
multial.c:594:25: warning: unused variable ‘i’ [-Wunused-variable]
  594 |   int alopen, pen, sav, i;
      |                         ^
multial.c:594:15: warning: unused variable ‘pen’ [-Wunused-variable]
  594 |   int alopen, pen, sav, i;
      |               ^~~
multial.c: In function ‘mkBarrel’:
multial.c:615:7: warning: unused variable ‘incr’ [-Wunused-variable]
  615 |   int incr;
      |       ^~~~
multial.c: In function ‘doNW’:
multial.c:811:20: warning: variable ‘oldneck’ set but not used [-Wunused-but-set-variable=]
  811 |   int numNecks =0, oldneck =0;
      |                    ^~~~~~~
multial.c:811:7: warning: variable ‘numNecks’ set but not used [-Wunused-but-set-variable=]
  811 |   int numNecks =0, oldneck =0;
      |       ^~~~~~~~
multial.c:808:8: warning: unused variable ‘rh’ [-Wunused-variable]
  808 |   char rh, ptr=0, isneck;
      |        ^~
multial.c:807:14: warning: unused variable ‘b’ [-Wunused-variable]
  807 |   align* a, *b;
      |              ^
multial.c:805:11: warning: unused variable ‘prevgap’ [-Wunused-variable]
  805 |   int tt, prevgap;
      |           ^~~~~~~
multial.c:805:7: warning: unused variable ‘tt’ [-Wunused-variable]
  805 |   int tt, prevgap;
      |       ^~
multial.c:804:7: warning: unused variable ‘gapend’ [-Wunused-variable]
  804 |   int gapend[3];
      |       ^~~~~~
multial.c: In function ‘removeSeqByName’:
multial.c:1062:8: warning: variable ‘removed’ set but not used [-Wunused-but-set-variable=]
 1062 |   seq *removed;
      |        ^~~~~~~
multial.c: In function ‘getSeqNum’:
multial.c:1073:8: warning: unused variable ‘removed’ [-Wunused-variable]
 1073 |   seq *removed;
      |        ^~~~~~~
multial.c: In function ‘remapHLLs’:
multial.c:1262:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1262 |         if (which == 0 && anchs->seq1end - anchs->seq1start < ANCHOR_LENGTH_CUTOFF ||
      |                        ^
multial.c:1104:43: warning: unused variable ‘olen’ [-Wunused-variable]
 1104 |   int mybp, i, *searchint, stmybp, mylen, olen, osize;
      |                                           ^~~~
multial.c: In function ‘hllJoin’:
multial.c:1352:10: warning: unused variable ‘j’ [-Wunused-variable]
 1352 |   int i, j;
      |          ^
multial.c:1352:7: warning: unused variable ‘i’ [-Wunused-variable]
 1352 |   int i, j;
      |       ^
multial.c: In function ‘minHLL’:
multial.c:1368:10: warning: unused variable ‘j’ [-Wunused-variable]
 1368 |   int i, j;
      |          ^
multial.c: In function ‘mergeHLLs’:
multial.c:1408:10: warning: unused variable ‘j’ [-Wunused-variable]
 1408 |   int i, j, mscore;
      |          ^
multial.c:1408:7: warning: unused variable ‘i’ [-Wunused-variable]
 1408 |   int i, j, mscore;
      |       ^
multial.c: In function ‘printTextAlign’:
multial.c:1466:7: warning: unused variable ‘nlets’ [-Wunused-variable]
 1466 |   int nlets=0;
      |       ^~~~~
multial.c:1465:13: warning: unused variable ‘s2’ [-Wunused-variable]
 1465 |   int s1=0, s2=0, c, k, i;
      |             ^~
multial.c:1465:7: warning: unused variable ‘s1’ [-Wunused-variable]
 1465 |   int s1=0, s2=0, c, k, i;
      |       ^~
multial.c: In function ‘printFASTAAlign’:
multial.c:1525:7: warning: unused variable ‘nlets’ [-Wunused-variable]
 1525 |   int nlets=0;
      |       ^~~~~
multial.c:1524:13: warning: unused variable ‘s2’ [-Wunused-variable]
 1524 |   int s1=0, s2=0, c, k, i;
      |             ^~
multial.c:1524:7: warning: unused variable ‘s1’ [-Wunused-variable]
 1524 |   int s1=0, s2=0, c, k, i;
      |       ^~
multial.c: In function ‘printXMFAAlign’:
multial.c:1553:7: warning: unused variable ‘nlets’ [-Wunused-variable]
 1553 |   int nlets=0;
      |       ^~~~~
multial.c:1552:13: warning: unused variable ‘s2’ [-Wunused-variable]
 1552 |   int s1=0, s2=0, c, k, i;
      |             ^~
multial.c:1552:7: warning: unused variable ‘s1’ [-Wunused-variable]
 1552 |   int s1=0, s2=0, c, k, i;
      |       ^~
multial.c: At top level:
multial.c:581:10: warning: ‘gapcache’ is static but used in inline function ‘endGap2’ which is not static
  581 |   return gapcache[(v((a->numseq - a->cnts[CNTS_GS][ai] - a->cnts[CNTS_GC][ai]) + b->cnts[CNTS_GE][bi])<<12) |
      |          ^~~~~~~~
multial.c:576:10: warning: ‘gapcache’ is static but used in inline function ‘endGap1’ which is not static
  576 |   return gapcache[(v((b->numseq - b->cnts[CNTS_GS][bi] - b->cnts[CNTS_GC][bi]) + a->cnts[CNTS_GE][ai]) << 12) |
      |          ^~~~~~~~
multial.c:570:10: warning: ‘gapcache’ is static but used in inline function ‘endGap0’ which is not static
  570 |   return gapcache[(v(a->cnts[CNTS_GE][ai]+b->cnts[CNTS_GE][bi])<<12) |
      |          ^~~~~~~~
multial.c:563:10: warning: ‘matchcache’ is static but used in inline function ‘scoreOpp’ which is not static
  563 |   return matchcache[v(other->cnts[0][ow]) |
      |          ^~~~~~~~~~
multial.c: In function ‘scoreLocal’:
multial.c:84:1: warning: control reaches end of non-void function [-Wreturn-type]
   84 | }
      | ^
multial.c: In function ‘readSubstMatrix’:
multial.c:478:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  478 |       fscanf (file, "%d", &k);
      |       ^~~~~~~~~~~~~~~~~~~~~~~
multial.c:486:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  486 |   fscanf (file, "%d", &gapstart);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multial.c:487:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  487 |   fscanf (file, "%d", &gapcont);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
multial.c: In function ‘removeSeqByName’:
multial.c:1068:1: warning: control reaches end of non-void function [-Wreturn-type]
 1068 | }
      | ^
multial.c: In function ‘printTextAlign’:
multial.c:1521:1: warning: control reaches end of non-void function [-Wreturn-type]
 1521 | }
      | ^
multial.c: In function ‘printFASTAAlign’:
multial.c:1549:1: warning: control reaches end of non-void function [-Wreturn-type]
 1549 | }
      | ^
multial.c: In function ‘printXMFAAlign’:
multial.c:1579:1: warning: control reaches end of non-void function [-Wreturn-type]
 1579 | }
      | ^
translate.c: In function ‘toPeptide’:
translate.c:9:10: warning: unused variable ‘j’ [-Wunused-variable]
    9 |   int i, j, sum=0, mask = 0;
      |          ^
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../utils/bin2mf utils/bin2mf.c
diagmatrix.c: In function ‘DMsetPtr’:
diagmatrix.c:155:8: warning: unused variable ‘res’ [-Wunused-variable]
  155 |   char res;
      |        ^~~
diagmatrix.c:154:19: warning: unused variable ‘loc’ [-Wunused-variable]
  154 |   int dn = x+y-1, loc;
      |                   ^~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../utils/bin2bl utils/bin2bl.c
utils/bin2bl.c: In function ‘main’:
utils/bin2bl.c:52:6: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
   52 |   if (argv[1][0] == '-')
      |      ^
utils/bin2bl.c:22:7: warning: unused variable ‘width’ [-Wunused-variable]
   22 |   int width = 60;
      |       ^~~~~
skiplist.c: In function ‘printSLE’:
skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=]
   12 |   printf("  %d   %x\n", tbp->index, tbp->myelem);
      |                  ~^                 ~~~~~~~~~~~
      |                   |                    |
      |                   unsigned int         void *
      |                  %p
skiplist.c: In function ‘makeSkLst’:
skiplist.c:33:7: warning: unused variable ‘i’ [-Wunused-variable]
   33 |   int i;
      |       ^
skiplist.c: In function ‘SLinsert’:
skiplist.c:100:37: warning: unused variable ‘tbe’ [-Wunused-variable]
  100 |   sle* prev = SLfind(trgt, index), *tbe;
      |                                     ^~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../utils/cextract utils/cextract.c
utils/cextract.c: In function ‘getLength’:
utils/cextract.c:16:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   fgets (buffer, 1024, file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~
utils/cextract.c: In function ‘readfile’:
utils/cextract.c:41:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   41 |     fgets (buffer, 1024, file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
diagmatrix.c: In function ‘DMsetPtr’:
diagmatrix.c:155:8: warning: unused variable ‘res’ [-Wunused-variable]
  155 |   char res;
      |        ^~~
diagmatrix.c:154:19: warning: unused variable ‘loc’ [-Wunused-variable]
  154 |   int dn = x+y-1, loc;
      |                   ^~~
utils/cextract.c:59:8: warning: ‘ch’ may be used uninitialized [-Wmaybe-uninitialized]
   59 |     if (ch == '>') ungetc (ch, file);
      |        ^
utils/cextract.c:29:22: note: ‘ch’ was declared here
   29 |   char buffer[1024], ch;
      |                      ^~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../utils/cstat utils/cstat.c
utils/cstat.c: In function ‘main’:
utils/cstat.c:235:7: warning: unused variable ‘i’ [-Wunused-variable]
  235 |   int i;
      |       ^
utils/cstat.c: In function ‘cntlets’:
utils/cstat.c:45:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   fgets(temp, 255, input);
      |   ^~~~~~~~~~~~~~~~~~~~~~~
utils/cstat.c: In function ‘readseq’:
utils/cstat.c:68:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   68 |   fgets(temp, 255, input);
      |   ^~~~~~~~~~~~~~~~~~~~~~~
skiplist.c: In function ‘printSLE’:
skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=]
   12 |   printf("  %d   %x\n", tbp->index, tbp->myelem);
      |                  ~^                 ~~~~~~~~~~~
      |                   |                    |
      |                   unsigned int         void *
      |                  %p
skiplist.c: In function ‘makeSkLst’:
skiplist.c:33:7: warning: unused variable ‘i’ [-Wunused-variable]
   33 |   int i;
      |       ^
skiplist.c: In function ‘SLinsert’:
skiplist.c:100:37: warning: unused variable ‘tbe’ [-Wunused-variable]
  100 |   sle* prev = SLfind(trgt, index), *tbe;
      |                                     ^~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../utils/contigorder utils/contigorder.c
utils/contigorder.c: In function ‘getFileInfo’:
utils/contigorder.c:15:57: warning: format ‘%s’ expects a matching ‘char *’ argument [-Wformat=]
   15 |     fprintf (stderr, "contigorder: Error opening file: %s\n");
      |                                                        ~^
      |                                                         |
      |                                                         char *
utils/contigorder.c:26:25: warning: unknown conversion type character ‘&’ in format [-Wformat=]
   26 |         fscanf (file, "%&d", &dummy);
      |                         ^
utils/contigorder.c:26:23: warning: too many arguments for format [-Wformat-extra-args]
   26 |         fscanf (file, "%&d", &dummy);
      |                       ^~~~~
utils/contigorder.c: In function ‘getScores’:
utils/contigorder.c:52:57: warning: format ‘%s’ expects a matching ‘char *’ argument [-Wformat=]
   52 |     fprintf (stderr, "contigorder: Error opening file: %s\n");
      |                                                        ~^
      |                                                         |
      |                                                         char *
utils/contigorder.c: In function ‘solveOrder’:
utils/contigorder.c:176:30: warning: unused variable ‘ptr’ [-Wunused-variable]
  176 |   int **best, *first, *last, ptr, newScore, **scoreOf;
      |                              ^~~
utils/contigorder.c: In function ‘getFileInfo’:
utils/contigorder.c:19:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   19 |   fscanf (file, "numContigs = %d\n", numContigs);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
utils/contigorder.c:20:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   20 |   fscanf (file, "seqLen = %d\n", seqLen);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
utils/contigorder.c:26:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 |         fscanf (file, "%&d", &dummy);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
utils/contigorder.c: In function ‘getScores’:
utils/contigorder.c:56:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   56 |   fscanf (file, "numContigs = %*d\n");
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
utils/contigorder.c:57:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   57 |   fscanf (file, "seqLen = %*d\n");
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
utils/contigorder.c:63:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   63 |         fscanf (file, "%d", &((*score)[i][j]));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
utils/contigorder.c: In function ‘solveOrder’:
utils/contigorder.c:247:44: warning: ‘bestState’ may be used uninitialized [-Wmaybe-uninitialized]
  247 |     for (i = 0; k && i < numCols; i++) if (bestState & (1 << i)){
      |                                            ^~~~~~~~~
utils/contigorder.c:177:22: note: ‘bestState’ was declared here
  177 |   int bestScore = 0, bestState, bestRange, newBest, addedScore;
      |                      ^~~~~~~~~
utils/contigorder.c:249:63: warning: ‘bestRange’ may be used uninitialized [-Wmaybe-uninitialized]
  249 |       for (j = 0; k && j < numRanges; j++) if (last[j] < first[bestRange]){
      |                                                               ^
utils/contigorder.c:177:33: note: ‘bestRange’ was declared here
  177 |   int bestScore = 0, bestState, bestRange, newBest, addedScore;
      |                                 ^~~~~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../utils/getbounds utils/getbounds.c
utils/getbounds.c: In function ‘main’:
utils/getbounds.c:32:27: warning: unused variable ‘ext’ [-Wunused-variable]
   32 |   int S1B, S1E, S2B, S2E, ext, len1, len2;
      |                           ^~~
utils/getbounds.c: In function ‘getLength’:
utils/getbounds.c:18:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   18 |   fgets (buffer, 1024, file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../utils/getlength utils/getlength.c
utils/getlength.c: In function ‘main’:
utils/getlength.c:20:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   20 |   fgets (buffer, BUF_SIZE, file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../utils/getoverlap utils/getoverlap.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../utils/rc utils/rc.c
utils/rc.c: In function ‘main’:
utils/rc.c:39:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   39 |   fgets(temp, 255, stdin);
      |   ^~~~~~~~~~~~~~~~~~~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../utils/seqmerge utils/seqmerge.c
utils/seqmerge.c: In function ‘main’:
utils/seqmerge.c:33:15: warning: suggest parentheses around comparison in operand of ‘^’ [-Wparentheses]
   33 |   if (written ^ 60 != 0) printf ("\n");
      |               ^
utils/seqmerge.c:19:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   19 |     fgets (buffer, 1024, file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../utils/scorealign utils/scorealign.c -lm
utils/scorealign.c: In function ‘getSequence’:
utils/scorealign.c:262:8: warning: variable ‘prevch’ set but not used [-Wunused-but-set-variable=]
  262 |   char prevch = '~';
      |        ^~~~~~
utils/scorealign.c: In function ‘getSequences’:
utils/scorealign.c:322:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  322 |   while (newseq = getSequence (file, &si, &ss, &se, &sd, &sc)){
      |          ^~~~~~
utils/scorealign.c:310:7: warning: unused variable ‘i’ [-Wunused-variable]
  310 |   int i, si, ss, se;
      |       ^
utils/scorealign.c: In function ‘processSequences’:
utils/scorealign.c:353:10: warning: unused variable ‘j’ [-Wunused-variable]
  353 |   int i, j;
      |          ^
utils/scorealign.c: In function ‘getSequence’:
utils/scorealign.c:266:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  266 |   fgets (line, 1024, file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~
utils/scorealign.c: In function ‘readScoreMatrix’:
utils/scorealign.c:411:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  411 |   fgets (line, 1024, file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~
utils/scorealign.c:419:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  419 |     fscanf (file, "%1s", &(line[0]));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
utils/scorealign.c:421:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  421 |       fscanf (file, "%d", &k);
      |       ^~~~~~~~~~~~~~~~~~~~~~~
utils/scorealign.c:426:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  426 |   fscanf (file, "%d%d", &gapopen, &gapcont);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../utils/scorecontigs utils/scorecontigs.c -lm
utils/scorecontigs.c: In function ‘analyze’:
utils/scorecontigs.c:345:13: warning: unused variable ‘k’ [-Wunused-variable]
  345 |   int i, j, k;
      |             ^
utils/scorecontigs.c: In function ‘main’:
utils/scorecontigs.c:385:38: warning: format ‘%s’ expects argument of type ‘char *’, but argument 6 has type ‘char (*)[1024]’ [-Wformat=]
  385 |     if (fscanf (filelist, "%d %d %d %s\n", &(num[numseqs]), &(offs1[numseqs]), &(offs2[numseqs]), &(contignames[numseqs])) == 4){
      |                                     ~^                                                            ~~~~~~~~~~~~~~~~~~~~~~~
      |                                      |                                                            |
      |                                      char *                                                       char (*)[1024]
utils/scorecontigs.c: In function ‘cntlets’:
utils/scorecontigs.c:56:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   56 |   fgets(temp, 1024, input);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~
utils/scorecontigs.c: In function ‘readseq’:
utils/scorecontigs.c:82:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   82 |   fgets (temp, 1024, input);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../utils/getcontigpos utils/getcontigpos.c
utils/getcontigpos.c: In function ‘print’:
utils/getcontigpos.c:66:46: warning: unused variable ‘j’ [-Wunused-variable]
   66 |   int i = 0, pos = 0, pos2 = 0, written = 0, j = 0;
      |                                              ^
utils/getcontigpos.c:66:33: warning: unused variable ‘written’ [-Wunused-variable]
   66 |   int i = 0, pos = 0, pos2 = 0, written = 0, j = 0;
      |                                 ^~~~~~~
utils/getcontigpos.c: In function ‘getLength’:
utils/getcontigpos.c:16:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   fgets (buffer, 1024, file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~
utils/getcontigpos.c: In function ‘readfile’:
utils/getcontigpos.c:41:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   41 |     fgets (buffer, 1024, file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
utils/getcontigpos.c:59:8: warning: ‘ch’ may be used uninitialized [-Wmaybe-uninitialized]
   59 |     if (ch == '>') ungetc (ch, file);
      |        ^
utils/getcontigpos.c:29:22: note: ‘ch’ was declared here
   29 |   char buffer[1024], ch;
      |                      ^~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../utils/fa2xfa utils/fa2xfa.c
utils/fa2xfa.c: In function ‘print’:
utils/fa2xfa.c:81:36: warning: unused variable ‘j’ [-Wunused-variable]
   81 |   int i = 0, pos = 0, written = 0, j = 0;
      |                                    ^
utils/fa2xfa.c:81:14: warning: unused variable ‘pos’ [-Wunused-variable]
   81 |   int i = 0, pos = 0, written = 0, j = 0;
      |              ^~~
utils/fa2xfa.c: In function ‘getLength’:
utils/fa2xfa.c:30:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   30 |   fgets (buffer, 1024, file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~
utils/fa2xfa.c: In function ‘readfile’:
utils/fa2xfa.c:55:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   55 |     fgets (buffer, 1024, file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../utils/Glue utils/Glue.cpp
utils/fa2xfa.c:74:8: warning: ‘ch’ may be used uninitialized [-Wmaybe-uninitialized]
   74 |     if (ch == '>') ungetc (ch, file);
      |        ^
utils/fa2xfa.c:43:22: note: ‘ch’ was declared here
   43 |   char buffer[1024], ch;
      |                      ^~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../utils/dotplot utils/dotplot.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -o ../utils/overlay utils/overlay.c
utils/dotplot.cpp: In function ‘int main(int, char**)’:
utils/dotplot.cpp:6:27: warning: variable ‘pa’ set but not used [-Wunused-but-set-variable=]
    6 |   int s1b, s1e, s2b, s2e, pa, pb, maxa = 0, maxb = 0;
      |                           ^~
utils/dotplot.cpp:6:31: warning: variable ‘pb’ set but not used [-Wunused-but-set-variable=]
    6 |   int s1b, s1e, s2b, s2e, pa, pb, maxa = 0, maxb = 0;
      |                               ^~
utils/dotplot.cpp:37:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   37 |     fgets (buffer, 105, file);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~
utils/dotplot.cpp:74:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   74 |     fgets (buffer, 105, file);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~
utils/dotplot.cpp:97:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |     fgets (buffer, 105, file);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~
utils/overlay.c: In function ‘read_align’:
utils/overlay.c:102:30: warning: unused variable ‘tt’ [-Wunused-variable]
  102 |   char currchar, checkchar, *tt;
      |                              ^~
utils/overlay.c: In function ‘read_sequences’:
utils/overlay.c:177:19: warning: unused variable ‘breaker’ [-Wunused-variable]
  177 |   int i, j, kmer, breaker;
      |                   ^~~~~~~
utils/overlay.c:177:13: warning: unused variable ‘kmer’ [-Wunused-variable]
  177 |   int i, j, kmer, breaker;
      |             ^~~~
utils/overlay.c:177:10: warning: unused variable ‘j’ [-Wunused-variable]
  177 |   int i, j, kmer, breaker;
      |          ^
utils/overlay.c: In function ‘main’:
utils/overlay.c:233:16: warning: unused variable ‘test’ [-Wunused-variable]
  233 |   float ttree, test;
      |                ^~~~
utils/overlay.c:233:9: warning: unused variable ‘ttree’ [-Wunused-variable]
  233 |   float ttree, test;
      |         ^~~~~
utils/overlay.c:232:7: warning: unused variable ‘moved’ [-Wunused-variable]
  232 |   int moved, i;
      |       ^~~~~
utils/overlay.c:231:8: warning: unused variable ‘string_tree’ [-Wunused-variable]
  231 |   char string_tree[16537]; //noone will ever need more :)))
      |        ^~~~~~~~~~~
utils/overlay.c: In function ‘read_align’:
utils/overlay.c:110:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  110 |   fgets(temp, 255, input);
      |   ^~~~~~~~~~~~~~~~~~~~~~~
utils/overlay.c:135:5: warning: ‘__strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  135 |     strncpy(allseqs[target]->seqname, temp, strlen(temp)+1);
      |     ^
utils/overlay.c:135:45: note: length computed here
  135 |     strncpy(allseqs[target]->seqname, temp, strlen(temp)+1);
      |                                             ^~~~~~~~~~~~
utils/Glue.cpp: In function ‘void readScoreMatrix(char*)’:
utils/Glue.cpp:33:15: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   33 |   lagan_dir = "/usr/lib/lagan";
      |               ^~~~~~~~~~~~~~~~
utils/Glue.cpp: In function ‘void calculateScoreMatrix(int)’:
utils/Glue.cpp:60:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   60 |   char *alpha = "ATCG";
      |                 ^~~~~~
utils/Glue.cpp:11:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   11 | #define NUCLEOTIDE_MATRIX_FILE "nucmatrix.txt"
      |                                ^~~~~~~~~~~~~~~
utils/Glue.cpp:68:22: note: in expansion of macro ‘NUCLEOTIDE_MATRIX_FILE’
   68 |     readScoreMatrix (NUCLEOTIDE_MATRIX_FILE);
      |                      ^~~~~~~~~~~~~~~~~~~~~~
utils/Glue.cpp: In function ‘int countLets(SafeVector<char>&)’:
utils/Glue.cpp:228:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  228 |     if (data[i] >= 'A' && data[i] <= 'Z' || data[i] >= 'a' && data[i] <= 'z')
utils/Glue.cpp: In function ‘int main(int, char**)’:
utils/Glue.cpp:372:19: warning: variable ‘end1’ set but not used [-Wunused-but-set-variable=]
  372 |   int begin1 = 1, end1 = 1;
      |                   ^~~~
utils/Glue.cpp: In function ‘void readScoreMatrix(char*)’:
utils/Glue.cpp:40:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   40 |   fgets (line, 1024, file);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~
utils/Glue.cpp:48:12: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   48 |     fscanf (file, "%1s", &(line[0]));
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
utils/Glue.cpp:50:14: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   50 |       fscanf (file, "%d", &k);
      |       ~~~~~~~^~~~~~~~~~~~~~~~
utils/Glue.cpp:55:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   55 |   fscanf (file, "%d%d", &gapopen, &gapcont);
      |   ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(cd glocal; make)
make[2]: Entering directory '/builddir/build/BUILD/lagan-2.0-build/lagan20/src/glocal'
g++ -Wno-deprecated -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I./ -c glocal.cpp
g++ -Wno-deprecated -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I./ -c io.cpp
g++ -Wno-deprecated -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I./ -c rightinfluence.cpp
g++ -Wno-deprecated -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I./ -c leftinfluence.cpp
In file included from ./rightinfluence.h:4,
                 from rightinfluence.cpp:1:
rightinfluence.cpp: In function ‘void initRI(RI*, long long int)’:
./structs.h:30:34: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses]
   30 | #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS
      |                                  ^
rightinfluence.cpp:9:29: note: in expansion of macro ‘RELPOSSHIFT’
    9 |         if (((scoreIndex >> RELPOSSHIFT) & 1) == LEFT) {
      |                             ^~~~~~~~~~~
rightinfluence.cpp: In function ‘long long int RICommitEndPoint(RI*, Fragment*)’:
./structs.h:30:34: warning: suggest parentheses around ‘+’ inside ‘<<’ [-Wparentheses]
   30 | #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS
      |                                  ^
rightinfluence.cpp:119:85: note: in expansion of macro ‘RELPOSSHIFT’
  119 | int possibleCase = NEGATIVE << DOWNSTRANDSHIFT | NEGATIVE <<UPSTRANDSHIFT | LEFT << RELPOSSHIFT;
      |                                                                                     ^~~~~~~~~~~
In file included from ./leftinfluence.h:4,
                 from leftinfluence.cpp:1:
leftinfluence.cpp: In function ‘void InitLI(LI*, long long int)’:
./structs.h:30:34: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses]
   30 | #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS
      |                                  ^
leftinfluence.cpp:135:29: note: in expansion of macro ‘RELPOSSHIFT’
  135 |         if (((scoreIndex >> RELPOSSHIFT) & 1) == LEFT) {
      |                             ^~~~~~~~~~~
leftinfluence.cpp: In function ‘void printState(LI*)’:
leftinfluence.cpp:619:23: warning: variable ‘colCount’ set but not used [-Wunused-but-set-variable=]
  619 |         long long int colCount, diagCount, ownerCount;
      |                       ^~~~~~~~
leftinfluence.cpp:619:33: warning: variable ‘diagCount’ set but not used [-Wunused-but-set-variable=]
  619 |         long long int colCount, diagCount, ownerCount;
      |                                 ^~~~~~~~~
leftinfluence.cpp:619:44: warning: variable ‘ownerCount’ set but not used [-Wunused-but-set-variable=]
  619 |         long long int colCount, diagCount, ownerCount;
      |                                            ^~~~~~~~~~
In file included from ./score.h:4,
                 from glocal.cpp:1:
glocal.cpp: In function ‘int main(int, char**)’:
./structs.h:31:50: warning: suggest parentheses around ‘+’ inside ‘<<’ [-Wparentheses]
   31 | #define TOTALSHIFT UPSTRANDBITS + DOWNSTRANDBITS + RELPOSBITS
      |                                                  ^
glocal.cpp:64:23: note: in expansion of macro ‘TOTALSHIFT’
   64 |         for (i=0;i<1<<TOTALSHIFT;i++) {
      |                       ^~~~~~~~~~
glocal.cpp: In function ‘long long int startPointHandler()’:
./structs.h:30:34: warning: suggest parentheses around ‘+’ inside ‘<<’ [-Wparentheses]
   30 | #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS
      |                                  ^
glocal.cpp:131:100: note: in expansion of macro ‘RELPOSSHIFT’
  131 |                 possibleCase = downStrand << DOWNSTRANDSHIFT | upStrand <<UPSTRANDSHIFT | relPos<< RELPOSSHIFT;
      |                                                                                                    ^~~~~~~~~~~
./structs.h:30:34: warning: suggest parentheses around ‘+’ inside ‘<<’ [-Wparentheses]
   30 | #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS
      |                                  ^
glocal.cpp:142:101: note: in expansion of macro ‘RELPOSSHIFT’
  142 |                 possibleCase = downStrand << DOWNSTRANDSHIFT | upStrand <<UPSTRANDSHIFT | relPos << RELPOSSHIFT;
      |                                                                                                     ^~~~~~~~~~~
glocal.cpp:120:15: warning: variable ‘current_score’ set but not used [-Wunused-but-set-variable=]
  120 |         float current_score;
      |               ^~~~~~~~~~~~~
glocal.cpp: In function ‘long long int endPointHandler()’:
./structs.h:30:34: warning: suggest parentheses around ‘+’ inside ‘<<’ [-Wparentheses]
   30 | #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS
      |                                  ^
glocal.cpp:224:116: note: in expansion of macro ‘RELPOSSHIFT’
  224 |                                 possibleCase = downStrand << DOWNSTRANDSHIFT | upStrand <<UPSTRANDSHIFT | relPos<< RELPOSSHIFT;
      |                                                                                                                    ^~~~~~~~~~~
io.cpp: In function ‘long long int getline(FILE*, hll*)’:
io.cpp:60:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |         fgets(temp, 1024, infile);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~
glocal.cpp: In function ‘intersectionPointHandler()’:
glocal.cpp:257:37: warning: ‘curr.seq1’ is used uninitialized [-Wuninitialized]
  257 |         } while (current_seq1==curr.seq1);
      |                                ~~~~~^~~~
glocal.cpp:243:17: note: ‘curr’ declared here
  243 |         Point p,curr;
      |                 ^~~~
g++ -Wno-deprecated -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I./ -c score.cpp
In function ‘intersectionPointHandler()’,
    inlined from ‘main’ at glocal.cpp:91:29:
glocal.cpp:257:37: warning: ‘curr.seq1’ may be used uninitialized [-Wmaybe-uninitialized]
  257 |         } while (current_seq1==curr.seq1);
      |                                ~~~~~^~~~
glocal.cpp: In function ‘main’:
glocal.cpp:243:17: note: ‘curr’ declared here
  243 |         Point p,curr;
      |                 ^~~~
In function ‘intersectionPointHandler()’,
    inlined from ‘main’ at glocal.cpp:101:29:
glocal.cpp:257:37: warning: ‘curr.seq1’ may be used uninitialized [-Wmaybe-uninitialized]
  257 |         } while (current_seq1==curr.seq1);
      |                                ~~~~~^~~~
glocal.cpp: In function ‘main’:
glocal.cpp:243:17: note: ‘curr’ declared here
  243 |         Point p,curr;
      |                 ^~~~
glocal.cpp: In function ‘intersectionPointHandler()’:
glocal.cpp:257:37: warning: ‘curr.seq1’ is used uninitialized [-Wuninitialized]
  257 |         } while (current_seq1==curr.seq1);
      |                                ~~~~~^~~~
glocal.cpp:243:17: note: ‘curr’ declared here
  243 |         Point p,curr;
      |                 ^~~~
In file included from score.cpp:1:
score.cpp: In function ‘void createScoreFunctionObjects(char*)’:
./structs.h:30:34: warning: suggest parentheses around ‘+’ inside ‘<<’ [-Wparentheses]
   30 | #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS
      |                                  ^
score.cpp:92:120: note: in expansion of macro ‘RELPOSSHIFT’
   92 |                 cases[i]= charToCase(updir)<<UPSTRANDSHIFT | charToCase(downdir)<<DOWNSTRANDSHIFT |charToCase(relpos)<<RELPOSSHIFT;
      |                                                                                                                        ^~~~~~~~~~~
score.cpp: In function ‘float scoreAll(Fragment*, Fragment*, long long int)’:
./structs.h:30:34: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses]
   30 | #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS
      |                                  ^
score.cpp:143:33: note: in expansion of macro ‘RELPOSSHIFT’
  143 |                 if (ret_case >> RELPOSSHIFT != UNRELATED) {
      |                                 ^~~~~~~~~~~
score.cpp: In function ‘float fragmentSetScore(Fragment*, Fragment*, LI*, RI*, long long int)’:
./structs.h:30:34: warning: suggest parentheses around ‘+’ inside ‘<<’ [-Wparentheses]
   30 | #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS
      |                                  ^
score.cpp:185:134: note: in expansion of macro ‘RELPOSSHIFT’
  185 |                 tempScore = scoreAll(owner,current, current->strand << DOWNSTRANDSHIFT | owner->strand <<UPSTRANDSHIFT | UNRELATED<< RELPOSSHIFT);
      |                                                                                                                                      ^~~~~~~~~~~
g++   glocal.o io.o rightinfluence.o leftinfluence.o score.o -o ../../glocal -lm
make[2]: Leaving directory '/builddir/build/BUILD/lagan-2.0-build/lagan20/src/glocal'
make[1]: Leaving directory '/builddir/build/BUILD/lagan-2.0-build/lagan20/src'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.ZFsWaj
+ umask 022
+ cd /builddir/build/BUILD/lagan-2.0-build
+ '[' /builddir/build/BUILD/lagan-2.0-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/lagan-2.0-build/BUILDROOT
++ dirname /builddir/build/BUILD/lagan-2.0-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/lagan-2.0-build
+ mkdir /builddir/build/BUILD/lagan-2.0-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd lagan20
+ rm -rf /builddir/build/BUILD/lagan-2.0-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/bin /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ install -m755 chaos /builddir/build/BUILD/lagan-2.0-build/BUILDROOT/usr/bin
+ install -m755 mlagan /builddir/build/BUILD/lagan-2.0-build/BUILDROOT/usr/bin
+ install -m755 prolagan /builddir/build/BUILD/lagan-2.0-build/BUILDROOT/usr/bin
+ install -m755 lagan.pl /builddir/build/BUILD/lagan-2.0-build/BUILDROOT/usr/bin/lagan
+ install -m755 slagan.pl /builddir/build/BUILD/lagan-2.0-build/BUILDROOT/usr/bin/slagan
+ for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl
+ install -m755 anal_gloc.pl /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan
+ for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl
+ install -m755 anchors /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan
+ for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl
+ install -m755 glocal /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan
+ for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl
+ install -m755 order /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan
+ for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl
+ install -m755 rechaos.pl /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan
+ for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl
+ install -m755 supermap.pl /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan
+ for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl
+ install -m755 xmfa2mfa.pl /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/bin2bl /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/bin2mf /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/cextract /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/cmerge2.pl /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/contigorder /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/cstat /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/dotplot /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/draft.pl /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/fa2xfa /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/getbounds /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/getcontigpos /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/getlength /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/getoverlap /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/Glue /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/mextract.pl /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/mf2bin.pl /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/mpretty.pl /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/mproject.pl /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/mrunfile.pl /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/mrunpairs.pl /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/mrun.pl /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/mviz.pl /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/rc /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/scorealign /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/scorecontigs /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/seqmerge /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay
+ install -m755 utils/overlay /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan/utils
+ install -m644 blosum62.txt blosum62s.txt nucmatrix.txt test.score /builddir/build/BUILD/lagan-2.0-build/BUILDROOT//usr/lib/lagan
+ rm -f Readmes/README.FIRST.chris Readmes/README.chaos.chris Readmes/README.lagan.chris Readmes/README.shuffle.chris
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.0-45.fc44 --unique-debug-suffix -2.0-45.fc44.i386 --unique-debug-src-base lagan-2.0-45.fc44.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/lagan-2.0-build/lagan20
find-debuginfo: starting
Extracting debug info from 23 files
DWARF-compressing 23 files
sepdebugcrcfix: Updated 23 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/lagan-2.0-45.fc44.i386
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ COMPRESS='gzip -9 -n'
+ COMPRESS_EXT=.gz
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/lib/lagan/rechaos.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/lib/lagan/anal_gloc.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/lib/lagan/utils/mviz.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/lib/lagan/utils/mrun.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/lib/lagan/utils/mrunpairs.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/lib/lagan/utils/mrunfile.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/lib/lagan/utils/mproject.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/lib/lagan/utils/mpretty.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/lib/lagan/utils/mf2bin.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/lib/lagan/utils/mextract.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/lib/lagan/utils/draft.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/lib/lagan/utils/cmerge2.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/lagan from /usr/bin/env perl to #!/usr/bin/perl
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-det --brp -j4 /builddir/build/BUILD/lagan-2.0-build/BUILDROOT
Scanned 19 directories and 120 files,
    processed 0 inodes,
    0 modified (0 replaced + 0 rewritten),
    0 unsupported format, 0 errors
+ /usr/bin/linkdupes --brp /builddir/build/BUILD/lagan-2.0-build/BUILDROOT/usr
Scanned 18 directories and 120 files,
    considered 120 files, read 4 files, linked 0 files, 0 errors
    sum of sizes of linked files: 0 bytes
Reading /builddir/build/BUILD/lagan-2.0-build/SPECPARTS/rpm-debuginfo.specpart
Processing files: lagan-2.0-45.fc44.i686
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.BqrmIX
+ umask 022
+ cd /builddir/build/BUILD/lagan-2.0-build
+ cd lagan20
+ DOCDIR=/builddir/build/BUILD/lagan-2.0-build/BUILDROOT/usr/share/doc/lagan
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/lagan-2.0-build/BUILDROOT/usr/share/doc/lagan
+ cp -pr /builddir/build/BUILD/lagan-2.0-build/lagan20/Readmes/LICENSE /builddir/build/BUILD/lagan-2.0-build/BUILDROOT/usr/share/doc/lagan
+ cp -pr /builddir/build/BUILD/lagan-2.0-build/lagan20/Readmes/README.FIRST /builddir/build/BUILD/lagan-2.0-build/BUILDROOT/usr/share/doc/lagan
+ cp -pr /builddir/build/BUILD/lagan-2.0-build/lagan20/Readmes/README.chaos /builddir/build/BUILD/lagan-2.0-build/BUILDROOT/usr/share/doc/lagan
+ cp -pr /builddir/build/BUILD/lagan-2.0-build/lagan20/Readmes/README.lagan /builddir/build/BUILD/lagan-2.0-build/BUILDROOT/usr/share/doc/lagan
+ cp -pr /builddir/build/BUILD/lagan-2.0-build/lagan20/Readmes/README.mlagan /builddir/build/BUILD/lagan-2.0-build/BUILDROOT/usr/share/doc/lagan
+ cp -pr /builddir/build/BUILD/lagan-2.0-build/lagan20/Readmes/README.shuffle /builddir/build/BUILD/lagan-2.0-build/BUILDROOT/usr/share/doc/lagan
+ cp -pr /builddir/build/BUILD/lagan-2.0-build/lagan20/Readmes/README.tools /builddir/build/BUILD/lagan-2.0-build/BUILDROOT/usr/share/doc/lagan
+ cp -pr /builddir/build/BUILD/lagan-2.0-build/lagan20/sample.fasta /builddir/build/BUILD/lagan-2.0-build/BUILDROOT/usr/share/doc/lagan
+ cp -pr /builddir/build/BUILD/lagan-2.0-build/lagan20/sample.params /builddir/build/BUILD/lagan-2.0-build/BUILDROOT/usr/share/doc/lagan
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: lagan = 2.0-45.fc44 lagan(x86-32) = 2.0-45.fc44
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.38) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_ABI_GNU_TLS) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libm.so.6 libm.so.6(GLIBC_2.29) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.30) libstdc++.so.6(GLIBCXX_3.4.32) libstdc++.so.6(GLIBCXX_3.4.9) perl(:VERSION) >= 5.5.0 perl(Cwd) perl(File::Basename) perl(File::Copy) perl(File::Path) perl(Getopt::Long) perl(IO::Handle) perl(IPC::Open2) perl(constant) perl(strict) perl(warnings) rtld(GNU_HASH)
Processing files: lagan-debugsource-2.0-45.fc44.i686
Provides: lagan-debugsource = 2.0-45.fc44 lagan-debugsource(x86-32) = 2.0-45.fc44
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: lagan-debuginfo-2.0-45.fc44.i686
Provides: debuginfo(build-id) = 0117f8b20388c85824bb6d7a4f823e9719f65d59 debuginfo(build-id) = 13e28741075ed4d4ab1b333c999c2bcd40266268 debuginfo(build-id) = 279f966c8f9a87957d5dc385de4658e4b028a538 debuginfo(build-id) = 2b37c00f8dd5c165d224018d3b28fee54159e90e debuginfo(build-id) = 305eb9b4675c2b17a955fa13f36ade0ac7bd6ef4 debuginfo(build-id) = 3fdbff03df2f532dbf4cfb61323b8c819b2b50ea debuginfo(build-id) = 5c9c61b630174ce20d6407c619787e18beae639c debuginfo(build-id) = 60eff216dacdf6d2ca950180193f4a7afb2ffa47 debuginfo(build-id) = 65e6c49a47f008aece7f6498f451be25698d5a06 debuginfo(build-id) = 665bdd091506456596631d45313fda3170492f2f debuginfo(build-id) = 6fcd4e4d6b32797e42acc9e04af9be850ff1c3db debuginfo(build-id) = 7e3b37f65d3f30513c2fbbe0aa69d63c057b893d debuginfo(build-id) = 8254b9ad6f47f2909b31afc49883466a0e798550 debuginfo(build-id) = 826c07d85d3e876fe2c41b6f13649ece627b9497 debuginfo(build-id) = a4a89eee9d41a35250f61d122f9c3c1cd0f61439 debuginfo(build-id) = bd07ff9af3576422ced68a03ae27a9689e193be4 debuginfo(build-id) = ca533fda2466bf54587fa939d5c4ffce27e36fbb debuginfo(build-id) = cf6dee9d743c5b8858cb1b216c8632c689565892 debuginfo(build-id) = d1521acff97ac74f344fb55f429ee8a7819efa38 debuginfo(build-id) = d2adb174e9676ddd4c5fc1ea22de83095e91dce4 debuginfo(build-id) = e736f3f51efb19157081a9fbf1493ebe3ffed26a debuginfo(build-id) = f003399b518d6669816de1ed8cf89951d93e1ef7 debuginfo(build-id) = fd27285c8daf8ab1fd9dba403133c70991063ba9 lagan-debuginfo = 2.0-45.fc44 lagan-debuginfo(x86-32) = 2.0-45.fc44
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: lagan-debugsource(x86-32) = 2.0-45.fc44
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/lagan-2.0-build/BUILDROOT
Wrote: /builddir/build/RPMS/lagan-debugsource-2.0-45.fc44.i686.rpm
Wrote: /builddir/build/RPMS/lagan-2.0-45.fc44.i686.rpm
Wrote: /builddir/build/RPMS/lagan-debuginfo-2.0-45.fc44.i686.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.uBWu9m
+ umask 022
+ cd /builddir/build/BUILD/lagan-2.0-build
+ test -d /builddir/build/BUILD/lagan-2.0-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/lagan-2.0-build
+ rm -rf /builddir/build/BUILD/lagan-2.0-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild lagan-2.0-45.fc44.src.rpm
Finish: build phase for lagan-2.0-45.fc44.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1766855907.055821/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/lagan-2.0-45.fc44.src.rpm) Config(child) 0 minutes 22 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "lagan",
            "epoch": null,
            "version": "2.0",
            "release": "45.fc44",
            "arch": "i686"
        },
        {
            "name": "lagan-debugsource",
            "epoch": null,
            "version": "2.0",
            "release": "45.fc44",
            "arch": "i686"
        },
        {
            "name": "lagan-debuginfo",
            "epoch": null,
            "version": "2.0",
            "release": "45.fc44",
            "arch": "i686"
        },
        {
            "name": "lagan",
            "epoch": null,
            "version": "2.0",
            "release": "45.fc44",
            "arch": "src"
        }
    ]
}
RPMResults finished