Warning: Permanently added '13.116.88.74' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9942730-fedora-rawhide-s390x --chroot fedora-rawhide-s390x


Version: 1.6
PID: 7841
Logging PID: 7843
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 9942730,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-s390x',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '79e9c8c1fd04cbbe3361623c686643114dd25444',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/autodocksuite',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'autodocksuite',
 'package_version': '4.2.6-25',
 'project_dirname': 'mbp-gcc-16',
 'project_name': 'mbp-gcc-16',
 'project_owner': 'siddhesh',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/siddhesh/mbp-gcc-16/fedora-rawhide-s390x/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'https://kojipkgs.fedoraproject.org/repos/f44-build-side-124978/latest/$basearch/',
            'id': 'https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch',
            'name': 'Additional repo https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch'}],
 'sandbox': 'siddhesh/mbp-gcc-16--siddhesh',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'siddhesh',
 'tags': [],
 'task_id': '9942730-fedora-rawhide-s390x',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/autodocksuite /var/lib/copr-rpmbuild/workspace/workdir-rowlyh3k/autodocksuite --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/autodocksuite', '/var/lib/copr-rpmbuild/workspace/workdir-rowlyh3k/autodocksuite', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-rowlyh3k/autodocksuite'...

Running: git checkout 79e9c8c1fd04cbbe3361623c686643114dd25444 --

cmd: ['git', 'checkout', '79e9c8c1fd04cbbe3361623c686643114dd25444', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-rowlyh3k/autodocksuite
rc: 0
stdout: 
stderr: Note: switching to '79e9c8c1fd04cbbe3361623c686643114dd25444'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 79e9c8c automatic import of autodocksuite

Running: dist-git-client sources
tail: /var/lib/copr-rpmbuild/main.log: file truncated

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-rowlyh3k/autodocksuite
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading autodocksuite-4.2.6-src.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o autodocksuite-4.2.6-src.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/siddhesh/mbp-gcc-16/autodocksuite/autodocksuite-4.2.6-src.tar.gz/md5/f4942c8e8c47aca7f3a2ae8794259067/autodocksuite-4.2.6-src.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 33.7M  100 33.7M    0     0  9332k      0  0:00:03  0:00:03 --:--:-- 9330k
INFO: Reading stdout from command: md5sum autodocksuite-4.2.6-src.tar.gz

Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-rowlyh3k/autodocksuite/autodocksuite.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-rowlyh3k/autodocksuite --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1766663355.794443 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.6 starting (python version = 3.13.7, NVR = mock-6.6-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-rowlyh3k/autodocksuite/autodocksuite.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-rowlyh3k/autodocksuite --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1766663355.794443 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-rowlyh3k/autodocksuite/autodocksuite.spec)  Config(fedora-rawhide-s390x)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.6
INFO: Mock Version: 6.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1766663355.794443/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Tagging container image as mock-bootstrap-2c787736-cf59-4ff6-a25f-50496ad478f0
INFO: Checking that f4be3ef5bb9240f1beafbcec765335e675e874c0d3a135661938fd970a2862f9 image matches host's architecture
INFO: Copy content of container f4be3ef5bb9240f1beafbcec765335e675e874c0d3a135661938fd970a2862f9 to /var/lib/mock/fedora-rawhide-s390x-bootstrap-1766663355.794443/root
INFO: mounting f4be3ef5bb9240f1beafbcec765335e675e874c0d3a135661938fd970a2862f9 with podman image mount
INFO: image f4be3ef5bb9240f1beafbcec765335e675e874c0d3a135661938fd970a2862f9 as /var/lib/containers/storage/overlay/1f8bb938fad1eb11d7eeafbf4a9bd49e93b5f81fb6b954f8ea68e43f64716adb/merged
INFO: umounting image f4be3ef5bb9240f1beafbcec765335e675e874c0d3a135661938fd970a2862f9 (/var/lib/containers/storage/overlay/1f8bb938fad1eb11d7eeafbf4a9bd49e93b5f81fb6b954f8ea68e43f64716adb/merged) with podman image umount
INFO: Removing image mock-bootstrap-2c787736-cf59-4ff6-a25f-50496ad478f0
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1766663355.794443/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-1.fc44.s390x
  rpm-sequoia-1.10.0-1.fc44.s390x
  dnf5-5.3.0.0-3.fc44.s390x
  dnf5-plugins-5.3.0.0-3.fc44.s390x
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 Additional repo https_kojipkgs_fedorap 100% |   4.2 KiB/s |   3.5 KiB |  00m01s
 Copr repository                        100% |   1.8 KiB/s |   1.5 KiB |  00m01s
 fedora                                 100% |   2.6 KiB/s |   4.1 KiB |  00m02s
Repositories loaded.
Package                            Arch   Version                      Repository                                                                        Size
Installing group/module packages:
 bash                              s390x  0:5.3.0-2.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   8.6 MiB
 bzip2                             s390x  0:1.0.8-21.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  86.9 KiB
 coreutils                         s390x  0:9.9-1.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   5.7 MiB
 cpio                              s390x  0:2.15-6.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.1 MiB
 diffutils                         s390x  0:3.12-3.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.6 MiB
 fedora-release-common             noarch 0:44-0.10                    https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  20.6 KiB
 findutils                         s390x  1:4.10.0-6.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 MiB
 gawk                              s390x  0:5.3.2-2.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 MiB
 glibc-minimal-langpack            s390x  0:2.42.9000-17.fc44          fedora                                                                         0.0   B
 grep                              s390x  0:3.12-2.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.0 MiB
 gzip                              s390x  0:1.14-1.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 397.4 KiB
 info                              s390x  0:7.2-7.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 397.0 KiB
 patch                             s390x  0:2.8-3.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 238.1 KiB
 redhat-rpm-config                 noarch 0:343-19.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 183.6 KiB
 rpm-build                         s390x  0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 281.6 KiB
 sed                               s390x  0:4.9-6.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 865.0 KiB
 shadow-utils                      s390x  2:4.18.0-7.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   4.0 MiB
 tar                               s390x  2:1.35-6.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.0 MiB
 unzip                             s390x  0:6.0-68.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 397.5 KiB
 util-linux                        s390x  0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.4 MiB
 which                             s390x  0:2.23-3.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  83.2 KiB
 xz                                s390x  1:5.8.1-4.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.3 MiB
Installing dependencies:
 R-srpm-macros                     noarch 0:1.3.0-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.2 KiB
 add-determinism                   s390x  0:0.7.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.6 MiB
 alternatives                      s390x  0:1.33-3.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  66.0 KiB
 ansible-srpm-macros               noarch 0:1-18.1.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  35.7 KiB
 audit-libs                        s390x  0:4.1.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 398.1 KiB
 binutils                          s390x  0:2.45.50-9.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  28.6 MiB
 build-reproducibility-srpm-macros noarch 0:0.7.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.2 KiB
 bzip2-libs                        s390x  0:1.0.8-21.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  84.4 KiB
 ca-certificates                   noarch 0:2025.2.80_v9.0.304-2.fc44  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.7 MiB
 cmake-srpm-macros                 noarch 0:3.31.10-3.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 524.0   B
 coreutils-common                  s390x  0:9.9-1.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  11.2 MiB
 crypto-policies                   noarch 0:20251128-1.git19878fe.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 132.6 KiB
 curl                              s390x  0:8.18.0~rc2-1.fc44          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 503.4 KiB
 cyrus-sasl-lib                    s390x  0:2.1.28-33.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.3 MiB
 debugedit                         s390x  0:5.2-3.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 217.2 KiB
 dwz                               s390x  0:0.16-2.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 310.4 KiB
 ed                                s390x  0:1.22.3-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 148.6 KiB
 efi-srpm-macros                   noarch 0:6-5.fc44                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  40.2 KiB
 elfutils                          s390x  0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.0 MiB
 elfutils-debuginfod-client        s390x  0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  75.5 KiB
 elfutils-default-yama-scope       noarch 0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.8 KiB
 elfutils-libelf                   s390x  0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.1 MiB
 elfutils-libs                     s390x  0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 778.3 KiB
 fedora-gpg-keys                   noarch 0:44-0.1                     https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 131.2 KiB
 fedora-release                    noarch 0:44-0.10                    https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   0.0   B
 fedora-release-identity-basic     noarch 0:44-0.10                    https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 664.0   B
 fedora-repos                      noarch 0:44-0.1                     https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   4.9 KiB
 fedora-repos-rawhide              noarch 0:44-0.1                     https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.2 KiB
 file                              s390x  0:5.46-8.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 100.0 KiB
 file-libs                         s390x  0:5.46-8.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  11.9 MiB
 filesystem                        s390x  0:3.18-50.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 112.0   B
 filesystem-srpm-macros            noarch 0:3.18-50.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  38.2 KiB
 fonts-srpm-macros                 noarch 1:5.0.0-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  55.8 KiB
 forge-srpm-macros                 noarch 0:0.4.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  38.9 KiB
 fpc-srpm-macros                   noarch 0:1.3-15.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 144.0   B
 gap-srpm-macros                   noarch 0:2-1.fc44                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.1 KiB
 gdb-minimal                       s390x  0:16.3-6.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  15.3 MiB
 gdbm-libs                         s390x  1:1.23-10.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 125.4 KiB
 ghc-srpm-macros                   noarch 0:1.9.2-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 779.0   B
 glibc                             s390x  0:2.42.9000-17.fc44          fedora                                                                         5.3 MiB
 glibc-common                      s390x  0:2.42.9000-17.fc44          fedora                                                                         1.1 MiB
 glibc-gconv-extra                 s390x  0:2.42.9000-17.fc44          fedora                                                                         6.7 MiB
 gmp                               s390x  1:6.3.0-4.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 773.9 KiB
 gnat-srpm-macros                  noarch 0:6-8.fc43                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.0 KiB
 gnulib-l10n                       noarch 0:20241231-1.fc44            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 655.0 KiB
 gnupg2                            s390x  0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   6.6 MiB
 gnupg2-dirmngr                    s390x  0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 661.7 KiB
 gnupg2-gpg-agent                  s390x  0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 718.3 KiB
 gnupg2-gpgconf                    s390x  0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 269.4 KiB
 gnupg2-keyboxd                    s390x  0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 209.1 KiB
 gnupg2-verify                     s390x  0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 364.2 KiB
 gnutls                            s390x  0:3.8.11-6.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.6 MiB
 go-srpm-macros                    noarch 0:3.8.0-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  61.9 KiB
 gpgverify                         noarch 0:2.2-3.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   8.7 KiB
 ima-evm-utils-libs                s390x  0:1.6.2-7.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  56.4 KiB
 jansson                           s390x  0:2.14-3.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  88.8 KiB
 java-srpm-macros                  noarch 0:1-7.fc43                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 870.0   B
 json-c                            s390x  0:0.18-7.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  82.4 KiB
 kernel-srpm-macros                noarch 0:1.0-27.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 KiB
 keyutils-libs                     s390x  0:1.6.3-6.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  50.0 KiB
 krb5-libs                         s390x  0:1.21.3-10.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.4 MiB
 libacl                            s390x  0:2.3.2-4.fc44               copr_base                                                                     35.6 KiB
 libarchive                        s390x  0:3.8.4-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.0 MiB
 libassuan                         s390x  0:2.5.7-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 163.6 KiB
 libatomic                         s390x  0:16.0.0-0.3.fc44            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  28.3 KiB
 libattr                           s390x  0:2.5.2-6.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  24.2 KiB
 libblkid                          s390x  0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 282.2 KiB
 libbrotli                         s390x  0:1.2.0-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 912.6 KiB
 libcap                            s390x  0:2.77-1.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 211.1 KiB
 libcap-ng                         s390x  0:0.8.5-8.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  60.4 KiB
 libcom_err                        s390x  0:1.47.3-3.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  58.9 KiB
 libcurl                           s390x  0:8.18.0~rc2-1.fc44          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.0 MiB
 libeconf                          s390x  0:0.7.9-2.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  64.7 KiB
 libevent                          s390x  0:2.1.12-16.fc43             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 914.1 KiB
 libfdisk                          s390x  0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 394.6 KiB
 libffi                            s390x  0:3.5.2-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  79.4 KiB
 libfsverity                       s390x  0:1.6-3.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  24.2 KiB
 libgcc                            s390x  0:16.0.0-0.3.fc44            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 201.4 KiB
 libgcrypt                         s390x  0:1.11.2-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.2 MiB
 libgomp                           s390x  0:16.0.0-0.3.fc44            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 574.4 KiB
 libgpg-error                      s390x  0:1.58-1.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 949.2 KiB
 libidn2                           s390x  0:2.3.8-2.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 564.3 KiB
 libksba                           s390x  0:1.6.7-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 410.3 KiB
 liblastlog2                       s390x  0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  33.2 KiB
 libmount                          s390x  0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 392.0 KiB
 libnghttp2                        s390x  0:1.68.0-2.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 165.8 KiB
 libnghttp3                        s390x  0:1.14.0-1.fc44              fedora                                                                       154.3 KiB
 libpkgconf                        s390x  0:2.3.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  81.7 KiB
 libpsl                            s390x  0:0.21.5-6.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  76.2 KiB
 libselinux                        s390x  0:3.9-5.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 208.9 KiB
 libselinux-utils                  s390x  0:3.9-5.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 272.6 KiB
 libsemanage                       s390x  0:3.9-4.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 312.0 KiB
 libsepol                          s390x  0:3.9-2.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 853.6 KiB
 libsmartcols                      s390x  0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 192.1 KiB
 libssh                            s390x  0:0.11.3-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 582.8 KiB
 libssh-config                     noarch 0:0.11.3-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 277.0   B
 libstdc++                         s390x  0:16.0.0-0.3.fc44            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.2 MiB
 libtasn1                          s390x  0:4.20.0-2.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 188.1 KiB
 libtool-ltdl                      s390x  0:2.5.4-9.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  69.6 KiB
 libunistring                      s390x  0:1.1-10.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.8 MiB
 libusb1                           s390x  0:1.0.29-4.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 170.6 KiB
 libuuid                           s390x  0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  33.0 KiB
 libverto                          s390x  0:0.3.2-11.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  25.1 KiB
 libxcrypt                         s390x  0:4.5.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 289.1 KiB
 libxml2                           s390x  0:2.12.10-5.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 MiB
 libzstd                           s390x  0:1.5.7-3.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.0 MiB
 linkdupes                         s390x  0:0.7.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 973.7 KiB
 lua-libs                          s390x  0:5.4.8-4.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 321.8 KiB
 lua-srpm-macros                   noarch 0:1-16.fc43                  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.3 KiB
 lz4-libs                          s390x  0:1.10.0-3.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 201.2 KiB
 mpfr                              s390x  0:4.2.2-2.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 699.5 KiB
 ncurses-base                      noarch 0:6.5-8.20250614.fc44        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 328.1 KiB
 ncurses-libs                      s390x  0:6.5-8.20250614.fc44        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.0 MiB
 nettle                            s390x  0:3.10.1-2.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 829.7 KiB
 ngtcp2                            s390x  0:1.18.0-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 309.0 KiB
 ngtcp2-crypto-ossl                s390x  0:1.18.0-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  47.3 KiB
 npth                              s390x  0:1.8-3.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  45.2 KiB
 ocaml-srpm-macros                 noarch 0:11-2.fc43                  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 KiB
 openblas-srpm-macros              noarch 0:2-20.fc43                  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 112.0   B
 openldap                          s390x  0:2.6.10-4.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 669.3 KiB
 openssl-libs                      s390x  1:3.5.4-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   7.3 MiB
 p11-kit                           s390x  0:0.25.8-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.6 MiB
 p11-kit-trust                     s390x  0:0.25.8-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 545.9 KiB
 package-notes-srpm-macros         noarch 0:0.5-14.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.6 KiB
 pam-libs                          s390x  0:1.7.1-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 122.1 KiB
 pcre2                             s390x  0:10.47-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 734.0 KiB
 pcre2-syntax                      noarch 0:10.47-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 281.9 KiB
 perl-srpm-macros                  noarch 0:1-60.fc43                  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 861.0   B
 pkgconf                           s390x  0:2.3.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  88.2 KiB
 pkgconf-m4                        noarch 0:2.3.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  14.4 KiB
 pkgconf-pkg-config                s390x  0:2.3.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 988.0   B
 policycoreutils                   s390x  0:3.9-5.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 664.8 KiB
 popt                              s390x  0:1.19-9.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 140.5 KiB
 publicsuffix-list-dafsa           noarch 0:20250616-2.fc43            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  69.1 KiB
 pyproject-srpm-macros             noarch 0:1.18.6-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 KiB
 python-srpm-macros                noarch 0:3.14-9.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  51.6 KiB
 qt5-srpm-macros                   noarch 0:5.15.18-1.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 500.0   B
 qt6-srpm-macros                   noarch 0:6.10.1-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 464.0   B
 readline                          s390x  0:8.3-2.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 575.3 KiB
 rpm                               s390x  0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.1 MiB
 rpm-build-libs                    s390x  0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 271.9 KiB
 rpm-libs                          s390x  0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.0 MiB
 rpm-plugin-selinux                s390x  0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  11.7 KiB
 rpm-sequoia                       s390x  0:1.10.0-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.6 MiB
 rpm-sign-libs                     s390x  0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  35.5 KiB
 rust-srpm-macros                  noarch 0:28.4-1.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   5.5 KiB
 selinux-policy                    noarch 0:42.19-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  32.0 KiB
 selinux-policy-targeted           noarch 0:42.19-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  18.7 MiB
 setup                             noarch 0:2.15.0-27.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 724.9 KiB
 sqlite-libs                       s390x  0:3.51.0-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.7 MiB
 systemd-libs                      s390x  0:259-1.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.4 MiB
 systemd-standalone-sysusers       s390x  0:259-1.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 301.5 KiB
 tpm2-tss                          s390x  0:4.1.3-8.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.6 MiB
 tree-sitter-srpm-macros           noarch 0:0.4.2-1.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   8.3 KiB
 util-linux-core                   s390x  0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.4 MiB
 xxhash-libs                       s390x  0:0.8.3-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  65.7 KiB
 xz-libs                           s390x  1:5.8.1-4.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 221.3 KiB
 zig-srpm-macros                   noarch 0:1-5.fc43                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.1 KiB
 zip                               s390x  0:3.0-44.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 729.6 KiB
 zlib-ng-compat                    s390x  0:2.3.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 125.1 KiB
 zstd                              s390x  0:1.5.7-3.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 521.4 KiB
Installing groups:
 Buildsystem building group                                                                                                                                  

Transaction Summary:
 Installing:       183 packages

Total size of inbound packages is 67 MiB. Need to download 178 KiB.
After this operation, 222 MiB extra will be used (install 222 MiB, remove 0 B).
[  1/183] tar-2:1.35-6.fc43.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
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[  2/183] bzip2-0:1.0.8-21.fc43.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
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[  3/183] redhat-rpm-config-0:343-19.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[  4/183] rpm-build-0:6.0.1-1.fc44.s390 100% |   0.0   B/s |   0.0   B |  00m00s
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[  5/183] unzip-0:6.0-68.fc44.s390x     100% |   0.0   B/s |   0.0   B |  00m00s
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[  6/183] cpio-0:2.15-6.fc43.s390x      100% |   0.0   B/s |   0.0   B |  00m00s
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[  7/183] which-0:2.23-3.fc43.s390x     100% |   0.0   B/s |   0.0   B |  00m00s
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[  8/183] bash-0:5.3.0-2.fc43.s390x     100% |   0.0   B/s |   0.0   B |  00m00s
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[  9/183] coreutils-0:9.9-1.fc44.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 10/183] grep-0:3.12-2.fc43.s390x      100% |   0.0   B/s |   0.0   B |  00m00s
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[ 11/183] patch-0:2.8-3.fc44.s390x      100% |   0.0   B/s |   0.0   B |  00m00s
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[ 12/183] sed-0:4.9-6.fc44.s390x        100% |   0.0   B/s |   0.0   B |  00m00s
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[ 13/183] shadow-utils-2:4.18.0-7.fc44. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 14/183] util-linux-0:2.41.3-8.fc44.s3 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 15/183] diffutils-0:3.12-3.fc43.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 16/183] fedora-release-common-0:44-0. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 17/183] findutils-1:4.10.0-6.fc43.s39 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 18/183] gawk-0:5.3.2-2.fc43.s390x     100% |   0.0   B/s |   0.0   B |  00m00s
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[ 19/183] glibc-minimal-langpack-0:2.42 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 20/183] gzip-0:1.14-1.fc44.s390x      100% |   0.0   B/s |   0.0   B |  00m00s
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[ 21/183] info-0:7.2-7.fc44.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
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[ 22/183] xz-1:5.8.1-4.fc44.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
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[ 23/183] glibc-0:2.42.9000-17.fc44.s39 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 24/183] glibc-common-0:2.42.9000-17.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 25/183] glibc-gconv-extra-0:2.42.9000 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 26/183] filesystem-0:3.18-50.fc43.s39 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 27/183] libgcc-0:16.0.0-0.3.fc44.s390 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 29/183] libblkid-0:2.41.3-8.fc44.s390 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 30/183] libcap-ng-0:0.8.5-8.fc44.s390 100% |   0.0   B/s |   0.0   B |  00m00s
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[181/183] publicsuffix-list-dafsa-0:202 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[182/183] libtool-ltdl-0:2.5.4-9.fc44.s 100% |  57.6 KiB/s |  36.6 KiB |  00m01s
[183/183] audit-libs-0:4.1.2-2.fc44.s39 100% | 154.9 KiB/s | 141.1 KiB |  00m01s
--------------------------------------------------------------------------------
[183/183] Total                         100% | 183.6 KiB/s | 177.8 KiB |  00m01s
Running transaction
Importing OpenPGP key 0x6D9F90A6:
 UserID     : "Fedora (44) <fedora-44-primary@fedoraproject.org>"
 Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary
The key was successfully imported.
Importing OpenPGP key 0x6D9F90A6:
 UserID     : "Fedora (44) <fedora-44-primary@fedoraproject.org>"
 Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary
The key was successfully imported.
Importing OpenPGP key 0x31645531:
 UserID     : "Fedora (43) <fedora-43-primary@fedoraproject.org>"
 Fingerprint: C6E7F081CF80E13146676E88829B606631645531
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary
The key was successfully imported.
Importing OpenPGP key 0xF577861E:
 UserID     : "Fedora (45) <fedora-45-primary@fedoraproject.org>"
 Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary
The key was successfully imported.
[  1/185] Verify package files          100% |   1.1 KiB/s | 183.0   B |  00m00s
>>> Running %pretrans scriptlet: filesystem-0:3.18-50.fc43.s390x
>>> Finished %pretrans scriptlet: filesystem-0:3.18-50.fc43.s390x
>>> [RPM] /var/lib/mock/fedora-rawhide-s390x-1766663355.794443/root/var/cache/dnf/copr_base-15004adc45ddc503/packages/libacl-2.3.2-4.fc44.s390x.rpm: Header OpenPGP V4 RSA/SHA256 signature, key ID 52ac7d71d4a9769d: NOKEY
[  2/185] Prepare transaction           100% |   2.5 KiB/s | 183.0   B |  00m00s
[  3/185] Installing libgcc-0:16.0.0-0. 100% | 198.3 MiB/s | 203.1 KiB |  00m00s
[  4/185] Installing publicsuffix-list- 100% |   0.0   B/s |  69.8 KiB |  00m00s
[  5/185] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  6/185] Installing fedora-release-ide 100% |   0.0   B/s | 920.0   B |  00m00s
[  7/185] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[  8/185] Installing fedora-gpg-keys-0: 100% |  43.7 MiB/s | 179.0 KiB |  00m00s
[  9/185] Installing fedora-repos-0:44- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[ 10/185] Installing fedora-release-com 100% |  24.3 MiB/s |  24.9 KiB |  00m00s
[ 11/185] Installing fedora-release-0:4 100% |  20.2 KiB/s | 124.0   B |  00m00s
>>> Running sysusers scriptlet: setup-0:2.15.0-27.fc44.noarch
>>> Finished sysusers scriptlet: setup-0:2.15.0-27.fc44.noarch
>>> Scriptlet output:
>>> Creating group 'adm' with GID 4.
>>> Creating group 'audio' with GID 63.
>>> Creating group 'cdrom' with GID 11.
>>> Creating group 'clock' with GID 103.
>>> Creating group 'dialout' with GID 18.
>>> Creating group 'disk' with GID 6.
>>> Creating group 'floppy' with GID 19.
>>> Creating group 'ftp' with GID 50.
>>> Creating group 'games' with GID 20.
>>> Creating group 'input' with GID 104.
>>> Creating group 'kmem' with GID 9.
>>> Creating group 'kvm' with GID 36.
>>> Creating group 'lock' with GID 54.
>>> Creating group 'lp' with GID 7.
>>> Creating group 'mail' with GID 12.
>>> Creating group 'man' with GID 15.
>>> Creating group 'mem' with GID 8.
>>> Creating group 'nobody' with GID 65534.
>>> Creating group 'render' with GID 105.
>>> Creating group 'root' with GID 0.
>>> Creating group 'sgx' with GID 106.
>>> Creating group 'sys' with GID 3.
>>> Creating group 'tape' with GID 33.
>>> Creating group 'tty' with GID 5.
>>> Creating group 'users' with GID 100.
>>> Creating group 'utmp' with GID 22.
>>> Creating group 'video' with GID 39.
>>> Creating group 'wheel' with GID 10.
>>> Creating user 'adm' (adm) with UID 3 and GID 4.
>>> Creating group 'bin' with GID 1.
>>> Creating user 'bin' (bin) with UID 1 and GID 1.
>>> Creating group 'daemon' with GID 2.
>>> Creating user 'daemon' (daemon) with UID 2 and GID 2.
>>> Creating user 'ftp' (FTP User) with UID 14 and GID 50.
>>> Creating user 'games' (games) with UID 12 and GID 100.
>>> Creating user 'halt' (halt) with UID 7 and GID 0.
>>> Creating user 'lp' (lp) with UID 4 and GID 7.
>>> Creating user 'mail' (mail) with UID 8 and GID 12.
>>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534.
>>> Creating user 'operator' (operator) with UID 11 and GID 0.
>>> Creating user 'root' (Super User) with UID 0 and GID 0.
>>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0.
>>> Creating user 'sync' (sync) with UID 5 and GID 0.
>>> 
[ 12/185] Installing setup-0:2.15.0-27. 100% |  47.6 MiB/s | 730.6 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 13/185] Installing filesystem-0:3.18- 100% |   2.4 MiB/s | 212.8 KiB |  00m00s
[ 14/185] Installing gnulib-l10n-0:2024 100% | 215.5 MiB/s | 661.9 KiB |  00m00s
[ 15/185] Installing coreutils-common-0 100% | 340.3 MiB/s |  11.2 MiB |  00m00s
[ 16/185] Installing pcre2-syntax-0:10. 100% | 277.7 MiB/s | 284.3 KiB |  00m00s
[ 17/185] Installing ncurses-base-0:6.5 100% |  86.3 MiB/s | 353.5 KiB |  00m00s
[ 18/185] Installing bash-0:5.3.0-2.fc4 100% | 239.4 MiB/s |   8.6 MiB |  00m00s
[ 19/185] Installing glibc-common-0:2.4 100% |  57.0 MiB/s |   1.1 MiB |  00m00s
[ 20/185] Installing glibc-gconv-extra- 100% | 227.0 MiB/s |   6.8 MiB |  00m00s
[ 21/185] Installing glibc-0:2.42.9000- 100% | 132.8 MiB/s |   5.3 MiB |  00m00s
[ 22/185] Installing ncurses-libs-0:6.5 100% | 201.4 MiB/s |   1.0 MiB |  00m00s
[ 23/185] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 24/185] Installing zlib-ng-compat-0:2 100% | 122.9 MiB/s | 125.9 KiB |  00m00s
[ 25/185] Installing bzip2-libs-0:1.0.8 100% |   0.0   B/s |  85.5 KiB |  00m00s
[ 26/185] Installing libgpg-error-0:1.5 100% |  58.3 MiB/s | 955.1 KiB |  00m00s
[ 27/185] Installing libassuan-0:2.5.7- 100% | 161.5 MiB/s | 165.4 KiB |  00m00s
[ 28/185] Installing libgcrypt-0:1.11.2 100% | 249.9 MiB/s |   1.2 MiB |  00m00s
[ 29/185] Installing readline-0:8.3-2.f 100% | 282.0 MiB/s | 577.5 KiB |  00m00s
[ 30/185] Installing xz-libs-1:5.8.1-4. 100% | 217.2 MiB/s | 222.4 KiB |  00m00s
[ 31/185] Installing libuuid-0:2.41.3-8 100% |   0.0   B/s |  34.1 KiB |  00m00s
[ 32/185] Installing gmp-1:6.3.0-4.fc44 100% | 252.6 MiB/s | 776.1 KiB |  00m00s
[ 33/185] Installing popt-0:1.19-9.fc43 100% |  71.8 MiB/s | 147.1 KiB |  00m00s
[ 34/185] Installing libzstd-0:1.5.7-3. 100% | 250.3 MiB/s |   1.0 MiB |  00m00s
[ 35/185] Installing elfutils-libelf-0: 100% | 377.5 MiB/s |   1.1 MiB |  00m00s
[ 36/185] Installing npth-0:1.8-3.fc43. 100% |   0.0   B/s |  46.3 KiB |  00m00s
[ 37/185] Installing libblkid-0:2.41.3- 100% | 276.6 MiB/s | 283.2 KiB |  00m00s
[ 38/185] Installing systemd-libs-0:259 100% | 263.9 MiB/s |   2.4 MiB |  00m00s
[ 39/185] Installing libxcrypt-0:4.5.2- 100% | 285.0 MiB/s | 291.8 KiB |  00m00s
[ 40/185] Installing libsepol-0:3.9-2.f 100% | 278.2 MiB/s | 854.5 KiB |  00m00s
[ 41/185] Installing sqlite-libs-0:3.51 100% | 281.4 MiB/s |   1.7 MiB |  00m00s
[ 42/185] Installing gnupg2-gpgconf-0:2 100% |  20.4 MiB/s | 271.5 KiB |  00m00s
[ 43/185] Installing libattr-0:2.5.2-6. 100% |   0.0   B/s |  25.1 KiB |  00m00s
[ 44/185] Installing libacl-0:2.3.2-4.f 100% |   0.0   B/s |  36.4 KiB |  00m00s
[ 45/185] Installing pcre2-0:10.47-1.fc 100% | 239.4 MiB/s | 735.4 KiB |  00m00s
[ 46/185] Installing libselinux-0:3.9-5 100% | 205.2 MiB/s | 210.1 KiB |  00m00s
[ 47/185] Installing grep-0:3.12-2.fc43 100% |  63.4 MiB/s |   1.0 MiB |  00m00s
[ 48/185] Installing sed-0:4.9-6.fc44.s 100% |  56.8 MiB/s | 873.2 KiB |  00m00s
[ 49/185] Installing findutils-1:4.10.0 100% | 104.5 MiB/s |   1.9 MiB |  00m00s
[ 50/185] Installing libtasn1-0:4.20.0- 100% | 185.5 MiB/s | 189.9 KiB |  00m00s
[ 51/185] Installing libunistring-0:1.1 100% | 294.2 MiB/s |   1.8 MiB |  00m00s
[ 52/185] Installing libidn2-0:2.3.8-2. 100% |  69.6 MiB/s | 570.4 KiB |  00m00s
[ 53/185] Installing crypto-policies-0: 100% |  30.8 MiB/s | 157.7 KiB |  00m00s
[ 54/185] Installing xz-1:5.8.1-4.fc44. 100% |  70.3 MiB/s |   1.3 MiB |  00m00s
[ 55/185] Installing libmount-0:2.41.3- 100% | 191.9 MiB/s | 393.0 KiB |  00m00s
[ 56/185] Installing gnupg2-verify-0:2. 100% |  27.5 MiB/s | 365.6 KiB |  00m00s
[ 57/185] Installing dwz-0:0.16-2.fc43. 100% |  23.4 MiB/s | 311.8 KiB |  00m00s
[ 58/185] Installing mpfr-0:4.2.2-2.fc4 100% | 228.2 MiB/s | 701.2 KiB |  00m00s
[ 59/185] Installing gawk-0:5.3.2-2.fc4 100% |  98.6 MiB/s |   1.9 MiB |  00m00s
[ 60/185] Installing libksba-0:1.6.7-4. 100% | 201.6 MiB/s | 412.9 KiB |  00m00s
[ 61/185] Installing unzip-0:6.0-68.fc4 100% |  30.1 MiB/s | 401.1 KiB |  00m00s
[ 62/185] Installing file-libs-0:5.46-8 100% | 593.0 MiB/s |  11.9 MiB |  00m00s
[ 63/185] Installing file-0:5.46-8.fc44 100% |   8.3 MiB/s | 101.5 KiB |  00m00s
[ 64/185] Installing diffutils-0:3.12-3 100% |  93.4 MiB/s |   1.6 MiB |  00m00s
[ 65/185] Installing libcap-ng-0:0.8.5- 100% |   0.0   B/s |  62.3 KiB |  00m00s
[ 66/185] Installing audit-libs-0:4.1.2 100% | 195.6 MiB/s | 400.7 KiB |  00m00s
[ 67/185] Installing libsemanage-0:3.9- 100% | 306.4 MiB/s | 313.8 KiB |  00m00s
[ 68/185] Installing libsmartcols-0:2.4 100% | 188.6 MiB/s | 193.1 KiB |  00m00s
[ 69/185] Installing libeconf-0:0.7.9-2 100% |  64.8 MiB/s |  66.3 KiB |  00m00s
[ 70/185] Installing pam-libs-0:1.7.1-3 100% | 121.6 MiB/s | 124.5 KiB |  00m00s
[ 71/185] Installing libcap-0:2.77-1.fc 100% |  16.2 MiB/s | 216.2 KiB |  00m00s
[ 72/185] Installing alternatives-0:1.3 100% |   5.5 MiB/s |  67.5 KiB |  00m00s
[ 73/185] Installing lua-libs-0:5.4.8-4 100% | 315.7 MiB/s | 323.3 KiB |  00m00s
[ 74/185] Installing json-c-0:0.18-7.fc 100% |  81.7 MiB/s |  83.6 KiB |  00m00s
[ 75/185] Installing libffi-0:3.5.2-1.f 100% |  78.9 MiB/s |  80.8 KiB |  00m00s
[ 76/185] Installing p11-kit-0:0.25.8-1 100% | 119.7 MiB/s |   2.6 MiB |  00m00s
[ 77/185] Installing p11-kit-trust-0:0. 100% |  28.1 MiB/s | 547.6 KiB |  00m00s
[ 78/185] Installing ngtcp2-0:1.18.0-1. 100% | 151.6 MiB/s | 310.5 KiB |  00m00s
[ 79/185] Installing openssl-libs-1:3.5 100% | 270.7 MiB/s |   7.3 MiB |  00m00s
[ 80/185] Installing coreutils-0:9.9-1. 100% | 165.4 MiB/s |   5.8 MiB |  00m00s
[ 81/185] Installing ca-certificates-0: 100% |   1.8 MiB/s |   2.5 MiB |  00m01s
[ 82/185] Installing gzip-0:1.14-1.fc44 100% |  24.6 MiB/s | 402.9 KiB |  00m00s
[ 83/185] Installing rpm-sequoia-0:1.10 100% | 260.1 MiB/s |   2.6 MiB |  00m00s
[ 84/185] Installing libfsverity-0:1.6- 100% |   0.0   B/s |  25.2 KiB |  00m00s
[ 85/185] Installing libevent-0:2.1.12- 100% | 298.8 MiB/s | 917.9 KiB |  00m00s
[ 86/185] Installing ngtcp2-crypto-ossl 100% |  46.9 MiB/s |  48.0 KiB |  00m00s
[ 87/185] Installing util-linux-core-0: 100% |  74.9 MiB/s |   1.4 MiB |  00m00s
[ 88/185] Installing zip-0:3.0-44.fc43. 100% |  47.8 MiB/s | 733.5 KiB |  00m00s
[ 89/185] Installing gnupg2-keyboxd-0:2 100% |  41.1 MiB/s | 210.4 KiB |  00m00s
[ 90/185] Installing libpsl-0:0.21.5-6. 100% |  75.5 MiB/s |  77.3 KiB |  00m00s
[ 91/185] Installing tar-2:1.35-6.fc43. 100% | 125.8 MiB/s |   3.0 MiB |  00m00s
[ 92/185] Installing linkdupes-0:0.7.2- 100% |  59.5 MiB/s | 975.1 KiB |  00m00s
[ 93/185] Installing libselinux-utils-0 100% |  20.0 MiB/s | 287.0 KiB |  00m00s
[ 94/185] Installing liblastlog2-0:2.41 100% |   8.6 MiB/s |  35.1 KiB |  00m00s
[ 95/185] Installing systemd-standalone 100% |  19.7 MiB/s | 302.0 KiB |  00m00s
[ 96/185] Installing libusb1-0:1.0.29-4 100% |  28.0 MiB/s | 172.3 KiB |  00m00s
>>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.s390x
>>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.s390x
>>> Scriptlet output:
>>> Creating group 'tss' with GID 59.
>>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59.
>>> 
[ 97/185] Installing tpm2-tss-0:4.1.3-8 100% | 226.9 MiB/s |   1.6 MiB |  00m00s
[ 98/185] Installing ima-evm-utils-libs 100% |   0.0   B/s |  57.8 KiB |  00m00s
[ 99/185] Installing gnupg2-gpg-agent-0 100% |  33.6 MiB/s | 722.3 KiB |  00m00s
[100/185] Installing libfdisk-0:2.41.3- 100% | 128.8 MiB/s | 395.7 KiB |  00m00s
[101/185] Installing util-linux-0:2.41. 100% |  92.3 MiB/s |   3.4 MiB |  00m00s
[102/185] Installing policycoreutils-0: 100% |  27.1 MiB/s | 693.0 KiB |  00m00s
[103/185] Installing selinux-policy-0:4 100% |   1.8 MiB/s |  33.6 KiB |  00m00s
[104/185] Installing selinux-policy-tar 100% | 181.9 MiB/s |  14.9 MiB |  00m00s
[105/185] Installing nettle-0:3.10.1-2. 100% | 203.3 MiB/s | 832.8 KiB |  00m00s
[106/185] Installing gnutls-0:3.8.11-6. 100% | 274.7 MiB/s |   3.6 MiB |  00m00s
[107/185] Installing libxml2-0:2.12.10- 100% |  88.8 MiB/s |   1.9 MiB |  00m00s
[108/185] Installing bzip2-0:1.0.8-21.f 100% |   6.9 MiB/s |  91.4 KiB |  00m00s
[109/185] Installing add-determinism-0: 100% | 122.6 MiB/s |   2.6 MiB |  00m00s
[110/185] Installing build-reproducibil 100% |   0.0   B/s |   1.5 KiB |  00m00s
[111/185] Installing cpio-0:2.15-6.fc43 100% |  69.7 MiB/s |   1.1 MiB |  00m00s
[112/185] Installing libpkgconf-0:2.3.0 100% |  80.9 MiB/s |  82.9 KiB |  00m00s
[113/185] Installing pkgconf-0:2.3.0-3. 100% |   6.8 MiB/s |  90.7 KiB |  00m00s
[114/185] Installing ed-0:1.22.3-1.fc44 100% |  12.3 MiB/s | 150.9 KiB |  00m00s
[115/185] Installing patch-0:2.8-3.fc44 100% |  18.0 MiB/s | 239.6 KiB |  00m00s
[116/185] Installing libatomic-0:16.0.0 100% |   0.0   B/s |  29.2 KiB |  00m00s
[117/185] Installing libstdc++-0:16.0.0 100% | 318.0 MiB/s |   3.2 MiB |  00m00s
[118/185] Installing rpm-libs-0:6.0.1-1 100% | 247.2 MiB/s |   1.0 MiB |  00m00s
[119/185] Installing zstd-0:1.5.7-3.fc4 100% |  36.6 MiB/s | 525.0 KiB |  00m00s
[120/185] Installing lz4-libs-0:1.10.0- 100% | 197.6 MiB/s | 202.3 KiB |  00m00s
[121/185] Installing libarchive-0:3.8.4 100% | 255.2 MiB/s |   1.0 MiB |  00m00s
[122/185] Installing jansson-0:2.14-3.f 100% |  88.1 MiB/s |  90.2 KiB |  00m00s
[123/185] Installing libgomp-0:16.0.0-0 100% | 281.2 MiB/s | 575.8 KiB |  00m00s
[124/185] Installing libtool-ltdl-0:2.5 100% |   0.0   B/s |  70.7 KiB |  00m00s
[125/185] Installing gdbm-libs-1:1.23-1 100% | 124.1 MiB/s | 127.1 KiB |  00m00s
[126/185] Installing cyrus-sasl-lib-0:2 100% | 117.8 MiB/s |   2.4 MiB |  00m00s
[127/185] Installing openldap-0:2.6.10- 100% | 219.1 MiB/s | 673.1 KiB |  00m00s
[128/185] Installing gnupg2-dirmngr-0:2 100% |  34.1 MiB/s | 664.4 KiB |  00m00s
[129/185] Installing gnupg2-0:2.4.8-4.f 100% | 190.0 MiB/s |   6.6 MiB |  00m00s
[130/185] Installing rpm-sign-libs-0:6. 100% |   0.0   B/s |  36.3 KiB |  00m00s
[131/185] Installing gpgverify-0:2.2-3. 100% |   0.0   B/s |   9.4 KiB |  00m00s
[132/185] Installing xxhash-libs-0:0.8. 100% |   0.0   B/s |  67.1 KiB |  00m00s
[133/185] Installing libbrotli-0:1.2.0- 100% | 223.4 MiB/s | 914.9 KiB |  00m00s
[134/185] Installing libnghttp2-0:1.68. 100% | 163.0 MiB/s | 166.9 KiB |  00m00s
[135/185] Installing libnghttp3-0:1.14. 100% | 152.1 MiB/s | 155.7 KiB |  00m00s
[136/185] Installing keyutils-libs-0:1. 100% |   0.0   B/s |  51.5 KiB |  00m00s
[137/185] Installing libcom_err-0:1.47. 100% |   0.0   B/s |  60.0 KiB |  00m00s
[138/185] Installing libverto-0:0.3.2-1 100% |  26.3 MiB/s |  26.9 KiB |  00m00s
[139/185] Installing krb5-libs-0:1.21.3 100% | 240.9 MiB/s |   2.4 MiB |  00m00s
[140/185] Installing libssh-0:0.11.3-1. 100% | 285.6 MiB/s | 584.9 KiB |  00m00s
[141/185] Installing libcurl-0:8.18.0~r 100% | 251.4 MiB/s |   1.0 MiB |  00m00s
[142/185] Installing curl-0:8.18.0~rc2- 100% |  24.7 MiB/s | 506.0 KiB |  00m00s
[143/185] Installing rpm-0:6.0.1-1.fc44 100% |  74.8 MiB/s |   2.5 MiB |  00m00s
[144/185] Installing cmake-srpm-macros- 100% |   0.0   B/s | 804.0   B |  00m00s
[145/185] Installing efi-srpm-macros-0: 100% |   0.0   B/s |  41.2 KiB |  00m00s
[146/185] Installing java-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[147/185] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[148/185] Installing tree-sitter-srpm-m 100% |   0.0   B/s |   9.3 KiB |  00m00s
[149/185] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[150/185] Installing filesystem-srpm-ma 100% |   0.0   B/s |  38.9 KiB |  00m00s
[151/185] Installing elfutils-default-y 100% | 681.0 KiB/s |   2.0 KiB |  00m00s
[152/185] Installing elfutils-libs-0:0. 100% | 190.5 MiB/s | 780.2 KiB |  00m00s
[153/185] Installing elfutils-debuginfo 100% |   5.4 MiB/s |  77.8 KiB |  00m00s
[154/185] Installing binutils-0:2.45.50 100% | 274.9 MiB/s |  28.6 MiB |  00m00s
[155/185] Installing elfutils-0:0.194-2 100% | 110.6 MiB/s |   3.0 MiB |  00m00s
[156/185] Installing gdb-minimal-0:16.3 100% | 242.2 MiB/s |  15.3 MiB |  00m00s
[157/185] Installing debugedit-0:5.2-3. 100% |  15.4 MiB/s | 220.6 KiB |  00m00s
[158/185] Installing rpm-build-libs-0:6 100% | 266.3 MiB/s | 272.7 KiB |  00m00s
[159/185] Installing pkgconf-m4-0:2.3.0 100% |   0.0   B/s |  14.8 KiB |  00m00s
[160/185] Installing pkgconf-pkg-config 100% | 147.8 KiB/s |   1.8 KiB |  00m00s
[161/185] Installing rust-srpm-macros-0 100% |   0.0   B/s |   6.4 KiB |  00m00s
[162/185] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 740.0   B |  00m00s
[163/185] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[164/185] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[165/185] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[166/185] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[167/185] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.1 KiB |  00m00s
[168/185] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[169/185] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[170/185] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[171/185] Installing gap-srpm-macros-0: 100% |   0.0   B/s |   2.7 KiB |  00m00s
[172/185] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[173/185] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[174/185] Installing rpm-build-0:6.0.1- 100% |  20.3 MiB/s | 290.7 KiB |  00m00s
[175/185] Installing pyproject-srpm-mac 100% |   0.0   B/s |   2.5 KiB |  00m00s
[176/185] Installing redhat-rpm-config- 100% |  92.7 MiB/s | 189.9 KiB |  00m00s
[177/185] Installing forge-srpm-macros- 100% |   0.0   B/s |  40.3 KiB |  00m00s
[178/185] Installing fonts-srpm-macros- 100% |   0.0   B/s |  57.0 KiB |  00m00s
[179/185] Installing go-srpm-macros-0:3 100% |   0.0   B/s |  63.0 KiB |  00m00s
[180/185] Installing R-srpm-macros-0:1. 100% |   0.0   B/s |   4.0 KiB |  00m00s
[181/185] Installing python-srpm-macros 100% |   0.0   B/s |  52.9 KiB |  00m00s
[182/185] Installing rpm-plugin-selinux 100% |   0.0   B/s |  12.6 KiB |  00m00s
[183/185] Installing which-0:2.23-3.fc4 100% |   6.0 MiB/s |  85.4 KiB |  00m00s
[184/185] Installing shadow-utils-2:4.1 100% | 112.1 MiB/s |   4.0 MiB |  00m00s
[185/185] Installing info-0:7.2-7.fc44. 100% |  52.0 KiB/s | 397.4 KiB |  00m08s
Warning: skipped OpenPGP checks for 178 packages from repositories: copr_base, https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: R-srpm-macros-1.3.0-1.fc44.noarch
add-determinism-0.7.2-2.fc44.s390x
alternatives-1.33-3.fc44.s390x
ansible-srpm-macros-1-18.1.fc43.noarch
audit-libs-4.1.2-2.fc44.s390x
bash-5.3.0-2.fc43.s390x
binutils-2.45.50-9.fc44.s390x
build-reproducibility-srpm-macros-0.7.2-2.fc44.noarch
bzip2-1.0.8-21.fc43.s390x
bzip2-libs-1.0.8-21.fc43.s390x
ca-certificates-2025.2.80_v9.0.304-2.fc44.noarch
cmake-srpm-macros-3.31.10-3.fc44.noarch
coreutils-9.9-1.fc44.s390x
coreutils-common-9.9-1.fc44.s390x
cpio-2.15-6.fc43.s390x
crypto-policies-20251128-1.git19878fe.fc44.noarch
curl-8.18.0~rc2-1.fc44.s390x
cyrus-sasl-lib-2.1.28-33.fc44.s390x
debugedit-5.2-3.fc44.s390x
diffutils-3.12-3.fc43.s390x
dwz-0.16-2.fc43.s390x
ed-1.22.3-1.fc44.s390x
efi-srpm-macros-6-5.fc44.noarch
elfutils-0.194-2.fc44.s390x
elfutils-debuginfod-client-0.194-2.fc44.s390x
elfutils-default-yama-scope-0.194-2.fc44.noarch
elfutils-libelf-0.194-2.fc44.s390x
elfutils-libs-0.194-2.fc44.s390x
fedora-gpg-keys-44-0.1.noarch
fedora-release-44-0.10.noarch
fedora-release-common-44-0.10.noarch
fedora-release-identity-basic-44-0.10.noarch
fedora-repos-44-0.1.noarch
fedora-repos-rawhide-44-0.1.noarch
file-5.46-8.fc44.s390x
file-libs-5.46-8.fc44.s390x
filesystem-3.18-50.fc43.s390x
filesystem-srpm-macros-3.18-50.fc43.noarch
findutils-4.10.0-6.fc43.s390x
fonts-srpm-macros-5.0.0-1.fc44.noarch
forge-srpm-macros-0.4.0-3.fc43.noarch
fpc-srpm-macros-1.3-15.fc43.noarch
gap-srpm-macros-2-1.fc44.noarch
gawk-5.3.2-2.fc43.s390x
gdb-minimal-16.3-6.fc44.s390x
gdbm-libs-1.23-10.fc43.s390x
ghc-srpm-macros-1.9.2-3.fc43.noarch
glibc-2.42.9000-17.fc44.s390x
glibc-common-2.42.9000-17.fc44.s390x
glibc-gconv-extra-2.42.9000-17.fc44.s390x
glibc-minimal-langpack-2.42.9000-17.fc44.s390x
gmp-6.3.0-4.fc44.s390x
gnat-srpm-macros-6-8.fc43.noarch
gnulib-l10n-20241231-1.fc44.noarch
gnupg2-2.4.8-4.fc43.s390x
gnupg2-dirmngr-2.4.8-4.fc43.s390x
gnupg2-gpg-agent-2.4.8-4.fc43.s390x
gnupg2-gpgconf-2.4.8-4.fc43.s390x
gnupg2-keyboxd-2.4.8-4.fc43.s390x
gnupg2-verify-2.4.8-4.fc43.s390x
gnutls-3.8.11-6.fc44.s390x
go-srpm-macros-3.8.0-1.fc44.noarch
gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b
gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98
gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf
gpgverify-2.2-3.fc43.noarch
grep-3.12-2.fc43.s390x
gzip-1.14-1.fc44.s390x
ima-evm-utils-libs-1.6.2-7.fc44.s390x
info-7.2-7.fc44.s390x
jansson-2.14-3.fc43.s390x
java-srpm-macros-1-7.fc43.noarch
json-c-0.18-7.fc43.s390x
kernel-srpm-macros-1.0-27.fc43.noarch
keyutils-libs-1.6.3-6.fc43.s390x
krb5-libs-1.21.3-10.fc44.s390x
libacl-2.3.2-4.fc44.s390x
libarchive-3.8.4-1.fc44.s390x
libassuan-2.5.7-4.fc43.s390x
libatomic-16.0.0-0.3.fc44.s390x
libattr-2.5.2-6.fc43.s390x
libblkid-2.41.3-8.fc44.s390x
libbrotli-1.2.0-1.fc44.s390x
libcap-2.77-1.fc44.s390x
libcap-ng-0.8.5-8.fc44.s390x
libcom_err-1.47.3-3.fc44.s390x
libcurl-8.18.0~rc2-1.fc44.s390x
libeconf-0.7.9-2.fc43.s390x
libevent-2.1.12-16.fc43.s390x
libfdisk-2.41.3-8.fc44.s390x
libffi-3.5.2-1.fc44.s390x
libfsverity-1.6-3.fc43.s390x
libgcc-16.0.0-0.3.fc44.s390x
libgcrypt-1.11.2-1.fc44.s390x
libgomp-16.0.0-0.3.fc44.s390x
libgpg-error-1.58-1.fc44.s390x
libidn2-2.3.8-2.fc43.s390x
libksba-1.6.7-4.fc43.s390x
liblastlog2-2.41.3-8.fc44.s390x
libmount-2.41.3-8.fc44.s390x
libnghttp2-1.68.0-2.fc44.s390x
libnghttp3-1.14.0-1.fc44.s390x
libpkgconf-2.3.0-3.fc43.s390x
libpsl-0.21.5-6.fc43.s390x
libselinux-3.9-5.fc44.s390x
libselinux-utils-3.9-5.fc44.s390x
libsemanage-3.9-4.fc44.s390x
libsepol-3.9-2.fc43.s390x
libsmartcols-2.41.3-8.fc44.s390x
libssh-0.11.3-1.fc44.s390x
libssh-config-0.11.3-1.fc44.noarch
libstdc++-16.0.0-0.3.fc44.s390x
libtasn1-4.20.0-2.fc43.s390x
libtool-ltdl-2.5.4-9.fc44.s390x
libunistring-1.1-10.fc43.s390x
libusb1-1.0.29-4.fc44.s390x
libuuid-2.41.3-8.fc44.s390x
libverto-0.3.2-11.fc43.s390x
libxcrypt-4.5.2-2.fc44.s390x
libxml2-2.12.10-5.fc44.s390x
libzstd-1.5.7-3.fc44.s390x
linkdupes-0.7.2-2.fc44.s390x
lua-libs-5.4.8-4.fc44.s390x
lua-srpm-macros-1-16.fc43.noarch
lz4-libs-1.10.0-3.fc43.s390x
mpfr-4.2.2-2.fc43.s390x
ncurses-base-6.5-8.20250614.fc44.noarch
ncurses-libs-6.5-8.20250614.fc44.s390x
nettle-3.10.1-2.fc43.s390x
ngtcp2-1.18.0-1.fc44.s390x
ngtcp2-crypto-ossl-1.18.0-1.fc44.s390x
npth-1.8-3.fc43.s390x
ocaml-srpm-macros-11-2.fc43.noarch
openblas-srpm-macros-2-20.fc43.noarch
openldap-2.6.10-4.fc44.s390x
openssl-libs-3.5.4-1.fc44.s390x
p11-kit-0.25.8-1.fc44.s390x
p11-kit-trust-0.25.8-1.fc44.s390x
package-notes-srpm-macros-0.5-14.fc43.noarch
pam-libs-1.7.1-3.fc43.s390x
patch-2.8-3.fc44.s390x
pcre2-10.47-1.fc44.s390x
pcre2-syntax-10.47-1.fc44.noarch
perl-srpm-macros-1-60.fc43.noarch
pkgconf-2.3.0-3.fc43.s390x
pkgconf-m4-2.3.0-3.fc43.noarch
pkgconf-pkg-config-2.3.0-3.fc43.s390x
policycoreutils-3.9-5.fc44.s390x
popt-1.19-9.fc43.s390x
publicsuffix-list-dafsa-20250616-2.fc43.noarch
pyproject-srpm-macros-1.18.6-1.fc44.noarch
python-srpm-macros-3.14-9.fc44.noarch
qt5-srpm-macros-5.15.18-1.fc44.noarch
qt6-srpm-macros-6.10.1-1.fc44.noarch
readline-8.3-2.fc43.s390x
redhat-rpm-config-343-19.fc44.noarch
rpm-6.0.1-1.fc44.s390x
rpm-build-6.0.1-1.fc44.s390x
rpm-build-libs-6.0.1-1.fc44.s390x
rpm-libs-6.0.1-1.fc44.s390x
rpm-plugin-selinux-6.0.1-1.fc44.s390x
rpm-sequoia-1.10.0-1.fc44.s390x
rpm-sign-libs-6.0.1-1.fc44.s390x
rust-srpm-macros-28.4-1.fc44.noarch
sed-4.9-6.fc44.s390x
selinux-policy-42.19-1.fc44.noarch
selinux-policy-targeted-42.19-1.fc44.noarch
setup-2.15.0-27.fc44.noarch
shadow-utils-4.18.0-7.fc44.s390x
sqlite-libs-3.51.0-1.fc44.s390x
systemd-libs-259-1.fc44.s390x
systemd-standalone-sysusers-259-1.fc44.s390x
tar-1.35-6.fc43.s390x
tpm2-tss-4.1.3-8.fc43.s390x
tree-sitter-srpm-macros-0.4.2-1.fc43.noarch
unzip-6.0-68.fc44.s390x
util-linux-2.41.3-8.fc44.s390x
util-linux-core-2.41.3-8.fc44.s390x
which-2.23-3.fc43.s390x
xxhash-libs-0.8.3-3.fc43.s390x
xz-5.8.1-4.fc44.s390x
xz-libs-5.8.1-4.fc44.s390x
zig-srpm-macros-1-5.fc43.noarch
zip-3.0-44.fc43.s390x
zlib-ng-compat-2.3.2-2.fc44.s390x
zstd-1.5.7-3.fc44.s390x
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1753228800
Wrote: /builddir/build/SRPMS/autodocksuite-4.2.6-25.fc44.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1766663355.794443/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-rowlyh3k/autodocksuite/autodocksuite.spec) Config(child) 0 minutes 29 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/autodocksuite-4.2.6-25.fc44.src.rpm)  Config(fedora-rawhide-s390x)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1766663355.794443/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1766663355.794443/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1766663355.794443/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-1.fc44.s390x
  rpm-sequoia-1.10.0-1.fc44.s390x
  dnf5-5.3.0.0-3.fc44.s390x
  dnf5-plugins-5.3.0.0-3.fc44.s390x
Finish: chroot init
Start: build phase for autodocksuite-4.2.6-25.fc44.src.rpm
Start: build setup for autodocksuite-4.2.6-25.fc44.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1753228800
Wrote: /builddir/build/SRPMS/autodocksuite-4.2.6-25.fc44.src.rpm
Updating and loading repositories:
 Additional repo https_kojipkgs_fedorap 100% |   8.2 KiB/s |   3.5 KiB |  00m00s
 Copr repository                        100% |   3.6 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% |   4.1 KiB/s |   4.1 KiB |  00m01s
Repositories loaded.
Package             Arch   Version                Repository                                                                        Size
Installing:
 gcc-c++            s390x  0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  37.0 MiB
 make               s390x  1:4.4.1-11.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 MiB
 tcsh               s390x  0:6.24.14-4.fc43       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.3 MiB
Installing dependencies:
 annobin-docs       noarch 0:13.04-3.fc44         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  99.2 KiB
 annobin-plugin-gcc s390x  0:13.04-3.fc44         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 695.3 KiB
 cpp                s390x  0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  32.1 MiB
 gcc                s390x  0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  95.0 MiB
 gcc-plugin-annobin s390x  0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  52.8 KiB
 glibc-devel        s390x  0:2.42.9000-17.fc44    fedora                                                                         3.7 MiB
 kernel-headers     s390x  0:6.19.0-0.rc2.20.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   6.8 MiB
 libasan            s390x  0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 MiB
 libmpc             s390x  0:1.3.1-8.fc43         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 160.4 KiB
 libstdc++-devel    s390x  0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  38.5 MiB
 libubsan           s390x  0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 499.9 KiB
 libxcrypt-devel    s390x  0:4.5.2-2.fc44         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  31.0 KiB

Transaction Summary:
 Installing:        15 packages

Total size of inbound packages is 72 MiB. Need to download 20 MiB.
After this operation, 220 MiB extra will be used (install 220 MiB, remove 0 B).
[ 1/15] make-1:4.4.1-11.fc43.s390x      100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 2/15] gcc-0:16.0.0-0.3.fc44.s390x     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 3/15] cpp-0:16.0.0-0.3.fc44.s390x     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 4/15] libmpc-0:1.3.1-8.fc43.s390x     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 5/15] glibc-devel-0:2.42.9000-17.fc44 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 6/15] libasan-0:16.0.0-0.3.fc44.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 7/15] libubsan-0:16.0.0-0.3.fc44.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 8/15] kernel-headers-0:6.19.0-0.rc2.2 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 9/15] libxcrypt-devel-0:4.5.2-2.fc44. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[10/15] gcc-plugin-annobin-0:16.0.0-0.3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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[14/15] libstdc++-devel-0:16.0.0-0.3.fc 100% |   2.5 MiB/s |   5.3 MiB |  00m02s
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--------------------------------------------------------------------------------
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Running transaction
[ 1/17] Verify package files            100% | 100.0   B/s |  15.0   B |  00m00s
[ 2/17] Prepare transaction             100% | 500.0   B/s |  15.0   B |  00m00s
[ 3/17] Installing libmpc-0:1.3.1-8.fc4 100% | 158.1 MiB/s | 161.9 KiB |  00m00s
[ 4/17] Installing cpp-0:16.0.0-0.3.fc4 100% | 254.9 MiB/s |  32.1 MiB |  00m00s
[ 5/17] Installing annobin-docs-0:13.04 100% |  49.0 MiB/s | 100.3 KiB |  00m00s
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[10/17] Installing libasan-0:16.0.0-0.3 100% | 268.3 MiB/s |   1.9 MiB |  00m00s
[11/17] Installing libstdc++-devel-0:16 100% | 406.6 MiB/s |  38.6 MiB |  00m00s
[12/17] Installing make-1:4.4.1-11.fc43 100% |  97.8 MiB/s |   1.9 MiB |  00m00s
[13/17] Installing gcc-0:16.0.0-0.3.fc4 100% | 285.3 MiB/s |  95.0 MiB |  00m00s
[14/17] Installing gcc-c++-0:16.0.0-0.3 100% | 251.5 MiB/s |  37.0 MiB |  00m00s
[15/17] Installing gcc-plugin-annobin-0 100% |   5.3 MiB/s |  54.4 KiB |  00m00s
[16/17] Installing annobin-plugin-gcc-0 100% |  56.7 MiB/s | 696.9 KiB |  00m00s
[17/17] Installing tcsh-0:6.24.14-4.fc4 100% |  11.1 MiB/s |   1.3 MiB |  00m00s
Warning: skipped OpenPGP checks for 14 packages from repository: https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch
Complete!
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1753228800
Wrote: /builddir/build/SRPMS/autodocksuite-4.2.6-25.fc44.src.rpm
Updating and loading repositories:
 Additional repo https_kojipkgs_fedorap 100% |   8.1 KiB/s |   3.5 KiB |  00m00s
 Copr repository                        100% |   3.6 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% |   4.8 KiB/s |   4.1 KiB |  00m01s
Repositories loaded.
Package "tcsh-6.24.14-4.fc43.s390x" is already installed.
Package "gcc-c++-16.0.0-0.3.fc44.s390x" is already installed.
Package "make-1:4.4.1-11.fc43.s390x" is already installed.

Nothing to do.
Finish: build setup for autodocksuite-4.2.6-25.fc44.src.rpm
Start: rpmbuild autodocksuite-4.2.6-25.fc44.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1753228800
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.1oSb9X
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.8vNhEP
+ umask 022
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ rm -rf src
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/autodocksuite-4.2.6-src.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd src
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.6S9HxS
~/build/BUILD/autodocksuite-4.2.6-build/src/autodock ~/build/BUILD/autodocksuite-4.2.6-build/src
+ umask 022
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd src
+ pushd autodock
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2014-07-19 01:58:48.000000000 +0000
+++ ./configure	2025-12-25 11:50:01.523893438 +0000
@@ -1874,7 +1874,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
+ ./configure --build=s390x-redhat-linux --host=s390x-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/bin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for gawk... (cached) gawk
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... none
checking for s390x-redhat-linux-ranlib... no
checking for ranlib... ranlib
checking build system type... s390x-redhat-linux-gnu
checking host system type... s390x-redhat-linux-gnu
checking for s390x-redhat-linux-gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... none
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... no
checking for _Bool... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for gethostname... yes
checking for getpid... yes
checking for GetProcessId... no
checking for fchmod... yes
checking for setlinebuf... yes
checking for sysconf... yes
checking for times... yes
checking for getrusage... yes
checking for pow... no
checking for sqrt... no
checking for strncasecmp... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) none
checking for g++ option to support OpenMP... -fopenmp
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
+ make -j2
rm -f default_parameters.h
csh ./paramdat2h.csh ./AD4_parameters.dat ./AD4.1_bound.dat > default_parameters.h
make  all-am
make[1]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-main.o `test -f 'main.cc' || echo './'`main.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-alea.o `test -f 'alea.cc' || echo './'`alea.cc
main.cc:3490: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
 3490 | #pragma omp parallel for \
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-analysis.o `test -f 'analysis.cc' || echo './'`analysis.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from hybrids.h:40,
                 from main.cc:98:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
main.cc: In function ‘int main(int, const char**)’:
main.cc:480:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  480 | register int i = 0;
      |              ^
main.cc:481:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  481 | register int j = 0;
      |              ^
main.cc:482:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  482 | register int k = 0;
      |              ^
main.cc:484:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  484 | register int xyz = 0;
      |              ^~~
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from analysis.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
analysis.cc: In function ‘void analysis(int, int*, GroupEnergy*, int, const char (*)[128], const Real*, const Real*, const Real*, Boole, const Real&, const Real (*)[3], const EnergyTables*, MapType*, const Real*, int, int, const NonbondParam*, int, int, State*, const char*, const Real*, Boole, Boole, const int (*)[2048], const int*, const Real (*)[3], const char*, const Real&, Boole, int, const int*, Boole, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Boole, Unbound_Model, Boole, int, int, FILE*)’:
analysis.cc:138:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  138 |     register int   i = 0;
      |                    ^
analysis.cc:139:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  139 |     register int   j = 0;
      |                    ^
analysis.cc:140:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  140 |     register int   k = 0;
      |                    ^
analysis.cc:141:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  141 |     register int   t = 0;
      |                    ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-atom_parameter_manager.o `test -f 'atom_parameter_manager.cc' || echo './'`atom_parameter_manager.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-banner.o `test -f 'banner.cc' || echo './'`banner.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-bestpdb.o `test -f 'bestpdb.cc' || echo './'`bestpdb.cc
main.cc:1250:89: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 313 [-Wformat-overflow=]
 1250 |                     prStr( error_message,"%s:         Edit the parameter library file \"%s\" and try again.\n", programname, FN_parameter_library );
      |                                                                                         ^~                                   ~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from /usr/include/c++/16/cstdio:47,
                 from /usr/include/c++/16/ext/string_conversions.h:47,
                 from /usr/include/c++/16/bits/basic_string.h:4465,
                 from /usr/include/c++/16/string:57,
                 from main.cc:71:
In function ‘sprintf’,
    inlined from ‘main’ at main.cc:1250:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 61 or more bytes (assuming 4156) into a destination of size 356
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
main.cc: In function ‘main’:
main.cc:2367:82: warning: ‘%s’ directive writing up to 511 bytes into a region of size 320 [-Wformat-overflow=]
 2367 |                     prStr( error_message,"%s: ERROR:  Unknown ligand atom type \"%s\"; add parameters for it to the parameter library first!\n", programname, param[i]);
      |                                                                                  ^~
In function ‘sprintf’,
    inlined from ‘main’ at main.cc:2367:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 94 or more bytes (assuming 605) into a destination of size 356
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
bestpdb.cc: In function ‘void bestpdb(int, const int*, const int (*)[2000], const Real*, const Real (*)[2048][3], const char (*)[128], int, Boole, const Real*, int, FILE*)’:
bestpdb.cc:58:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   58 |     register int  i=0,
      |                   ^
bestpdb.cc:59:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   59 |                   j=0,
      |                   ^
bestpdb.cc:60:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   60 |                   k=0,
      |                   ^
bestpdb.cc:61:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |                   confnum=0;
      |                   ^~~~~~~
bestpdb.cc:123:62: warning: ‘%4d’ directive writing between 4 and 10 bytes into a region of size 9 [-Wformat-overflow=]
  123 |                     sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11],
      |                                                              ^~~
bestpdb.cc:123:53: note: directive argument in the range [1, 2147483647]
  123 |                     sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11],
      |                                                     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from bestpdb.cc:33:
In function ‘sprintf’,
    inlined from ‘bestpdb(int, int const*, int const (*) [2000], double const*, double const (*) [2048][3], char const (*) [128], int, int, double const*, int, _IO_FILE*)’ at bestpdb.cc:123:28:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 20 and 26 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-calculateEnergies.o `test -f 'calculateEnergies.cc' || echo './'`calculateEnergies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-call_glss.o `test -f 'call_glss.cc' || echo './'`call_glss.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from call_glss.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
call_glss.cc: In function ‘State call_glss(Global_Search*, Local_Search*, const State&, unsigned int, unsigned int, int, FILE*, const Output_pop_stats&, Molecule*, Eval*, Boole, Boole, Boole, const GridMapSetInfo*, const char*, int*)’:
call_glss.cc:259:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  259 |     register unsigned int i;
      |                           ^
call_glss.cc:260:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  260 |     register int j;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-call_ls.o `test -f 'call_ls.cc' || echo './'`call_ls.cc
In file included from eval.h:38,
                 from support.h:237,
                 from ls.h:40,
                 from call_ls.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
call_ls.cc: In function ‘Representation** cnv_state_to_rep(const State&)’:
call_ls.cc:50:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   50 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-center_ligand.o `test -f 'center_ligand.cc' || echo './'`center_ligand.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-changeState.o `test -f 'changeState.cc' || echo './'`changeState.cc
In file included from changeState.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
changeState.cc: In function ‘State changeState(const State&, const Real&, const Real&, int, const Real (*)[8][2], const int*)’:
changeState.cc:46:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-check_header_float.o `test -f 'check_header_float.cc' || echo './'`check_header_float.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-check_header_int.o `test -f 'check_header_int.cc' || echo './'`check_header_int.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-check_header_line.o `test -f 'check_header_line.cc' || echo './'`check_header_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-cluster_analysis.o `test -f 'cluster_analysis.cc' || echo './'`cluster_analysis.cc
cluster_analysis.cc: In function ‘int cluster_analysis(const Real&, int (*)[2000], int*, const int*, int, int, const int*, const Real (*)[2048][3], const Real (*)[3], const Real*, Real (*)[2000], Boole, Boole, Real (*)[3], int, Real*, Boole, int)’:
cluster_analysis.cc:61:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |     register int compare = 0,
      |                  ^~~~~~~
cluster_analysis.cc:62:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |                  i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-clmode.o `test -f 'clmode.cc' || echo './'`clmode.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-cnv_state_to_coords.o `test -f 'cnv_state_to_coords.cc' || echo './'`cnv_state_to_coords.cc
In file included from clmode.h:40,
                 from clmode.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
clmode.cc: In function ‘void clmode(int, const Real&, const char*, const clock_t&, const tms&, Boole, const char*, const Real (*)[3], const Real*, Boole, Boole, const char*, Boole, int, int, FILE*)’:
clmode.cc:62:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |     register int xyz = 0;
      |                  ^~~
clmode.cc:89:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |     register int i = 0;
      |                  ^
clmode.cc:90:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int j = 0;
      |                  ^
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from cnv_state_to_coords.cc:37:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
clmode.cc:210:28: warning: ‘__strncpy_chk’ output may be truncated copying 30 bytes from a string of length 255 [-Wstringop-truncation]
  210 |                     strncpy( atomstuff[atomCounter], line, (size_t)30 );
      |                            ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-com.o `test -f 'com.cc' || echo './'`com.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-conformation_sampler.o `test -f 'conformation_sampler.cc' || echo './'`conformation_sampler.cc
com.cc:238: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
  238 | #pragma omp critical
In file included from eval.h:38,
                 from support.h:237,
                 from conformation_sampler.h:29,
                 from conformation_sampler.cc:27:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
conformation_sampler.cc: In constructor ‘ConformationSampler::ConformationSampler(const State&, int, Eval*, int, FILE*)’:
conformation_sampler.cc:99:10: warning: variable ‘base_q’ set but not used [-Wunused-but-set-variable=]
   99 |     Quat base_q = probe_point.readQuat();
      |          ^~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-dimLibrary.o `test -f 'dimLibrary.cc' || echo './'`dimLibrary.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from pso.h:4,
                 from dimLibrary.cc:6:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
dimLibrary.cc: In function ‘void copyDimension(State*, const Position&)’:
dimLibrary.cc:17:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   17 |         register int i, j;
      |                      ^
dimLibrary.cc:17:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   17 |         register int i, j;
      |                         ^
dimLibrary.cc: In function ‘void copyState2Dimension(Position*, const State&)’:
dimLibrary.cc:34:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   34 |         register int i, j;
      |                      ^
dimLibrary.cc:34:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   34 |         register int i, j;
      |                         ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-distdepdiel.o `test -f 'distdepdiel.cc' || echo './'`distdepdiel.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-stateLibrary.o `test -f 'stateLibrary.cc' || echo './'`stateLibrary.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-readfield.o `test -f 'readfield.cc' || echo './'`readfield.cc
In file included from stateLibrary.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
stateLibrary.cc: In function ‘void initialiseState(State*)’:
stateLibrary.cc:40:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   40 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘void copyState(State*, const State&)’:
stateLibrary.cc:61:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘void printState(FILE*, State, int)’:
stateLibrary.cc:90:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘int checkState(FILE*, const State*)’:
stateLibrary.cc:199:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  199 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘Molecule copyStateToMolecule(const State*, Molecule*)’:
stateLibrary.cc:251:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  251 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-readmap.o `test -f 'readmap.cc' || echo './'`readmap.cc
readfield.cc: In function ‘void readfield(GridMapSetInfo*, char*, const clock_t&, const tms&, int, FILE*)’:
readfield.cc:49:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   49 |     register int i = 0;
      |                  ^
readfield.cc:83:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   83 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:108:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  108 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:116:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  116 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:123:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  123 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-readPDBQT.o `test -f 'readPDBQT.cc' || echo './'`readPDBQT.cc
readmap.cc: In function ‘Statistics readmap(char*, int, const clock_t&, const tms&, Boole, Boole*, int, const GridMapSetInfo*, MapType*, char, FILE*)’:
readmap.cc:82:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   82 |     register int xyz = 0;
      |                  ^~~
readmap.cc:83:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   83 |     register int i = 0;
      |                  ^
readmap.cc:84:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   84 |     register int j = 0;
      |                  ^
readmap.cc:85:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   85 |     register int k = 0;
      |                  ^
readPDBQT.cc: In function ‘Molecule readPDBQT(char*, int, int*, Real (*)[3], Real*, Boole*, int*, int*, char (*)[5], char*, char*, Boole, char (*)[128], int*, int*, Boole*, int*, int*, Real*, Real*, int*, int*, int (*)[2048], Real (*)[3], int*, int*, NonbondParam*, const clock_t&, const tms&, const char*, int*, int*, int, char (*)[256], int*, int, int, FILE*)’:
readPDBQT.cc:138:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  138 |         register int    i = 0;
      |                         ^
readPDBQT.cc:139:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  139 |         register int    j = 0;
      |                         ^
readPDBQT.cc:133:25: warning: variable ‘B_has_conect_records’ set but not used [-Wunused-but-set-variable=]
  133 |         Boole           B_has_conect_records = FALSE;
      |                         ^~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-read_parameter_library.o `test -f 'read_parameter_library.cc' || echo './'`read_parameter_library.cc
readPDBQT.cc:370:308: warning: ‘ could not be found;
	check ...’ directive writing 238 bytes into a region of size between 195 and 212 [-Wformat-overflow=]
  370 |                     prStr(message, "%s: WARNING: the atom type (%s) of atom number %d could not be found;\n\tcheck that this atom type is listed after the \"ligand_types\" keyword in the DPF,\n\tand make sure to add a \"map\" keyword to the DPF for this atom type.\n\tNote that AutoDock will use the default atom type = 1, instead.\n\n", programname, this_parameter_entry.autogrid_type, natom+1);
      |                                                                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from readPDBQT.cc:33:
In function ‘sprintf’,
    inlined from ‘readPDBQT(char*, int, int*, double (*) [3], double*, int*, int*, int*, char (*) [5], char*, char*, int, char (*) [128], int*, int*, int*, int*, int*, double*, double*, int*, int*, int (*) [2048], double (*) [3], int*, int*, nonbond_param*, long const&, tms const&, char const*, int*, int*, int, char (*) [256], int*, int, int, _IO_FILE*)’ at readPDBQT.cc:370:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 283 or more bytes (assuming 300) into a destination of size 256
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
read_parameter_library.cc: In function ‘void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)’:
read_parameter_library.cc:207:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  207 |     register int counter = 0;
      |                  ^~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-eval.o `test -f 'eval.cc' || echo './'`eval.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-gencau.o `test -f 'gencau.cc' || echo './'`gencau.cc
In file included from eval.h:38,
                 from eval.cc:39:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
eval.cc: In function ‘void make_state_from_rep(const Representation* const*, State*, int, FILE*)’:
eval.cc:72:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   72 |    register int i;
      |                 ^
eval.cc: In member function ‘double Eval::eval(int)’:
eval.cc:135:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  135 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-getrms.o `test -f 'getrms.cc' || echo './'`getrms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-get_atom_type.o `test -f 'get_atom_type.cc' || echo './'`get_atom_type.cc
getrms.cc: In function ‘Real getrms(const Real (*)[3], const Real (*)[3], Boole, Boole, int, const int*, Boole, int)’:
getrms.cc:48:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                  ^
getrms.cc:48:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                     ^
getrms.cc:48:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                        ^~~
get_atom_type.cc: In function ‘int get_atom_type(const char*)’:
get_atom_type.cc:53:9: warning: variable ‘bond_index’ set but not used [-Wunused-but-set-variable=]
   53 |     int bond_index = -1;
      |         ^~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-getInitialState.o `test -f 'getInitialState.cc' || echo './'`getInitialState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-getpdbcrds.o `test -f 'getpdbcrds.cc' || echo './'`getpdbcrds.cc
In file included from getInitialState.h:31,
                 from getInitialState.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
getInitialState.cc: In function ‘void getInitialState(Real*, const Real&, State*, State*, State*, Boole, Boole, Boole, const Real*, const Real*, const Real*, Real (*)[3], const Real (*)[3], const char (*)[128], EnergyComponent*, const EnergyTables*, Boole, MapType*, int, int, int*, GroupEnergy*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], int, int, const Real&, int, const int*, Boole, const Real&, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Unbound_Model, int, FILE*)’:
getInitialState.cc:111:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  111 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-gs.o `test -f 'gs.cc' || echo './'`gs.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-initautodock.o `test -f 'initautodock.cc' || echo './'`initautodock.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from gs.cc:42:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
gs.cc: In function ‘double worst_in_window(const double*, int, int, FILE*)’:
gs.cc:73:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   73 |    register int i;
      |                 ^
gs.cc: In function ‘double avg_in_window(const double*, int, FILE*)’:
gs.cc:107:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  107 |    register int i;
      |                 ^
gs.cc: In member function ‘double Genetic_Algorithm::worst_this_generation(const Population&, int, FILE*)’:
gs.cc:130:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  130 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::make_table(int, const Real&, int, FILE*)’:
gs.cc:287:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  287 |    register int i, j;
      |                 ^
gs.cc:287:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  287 |    register int i, j;
      |                    ^
gs.cc: In member function ‘void Genetic_Algorithm::initialize(unsigned int, unsigned int, int, FILE*)’:
gs.cc:396:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  396 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::crossover(Population&, int, FILE*)’:
gs.cc:596:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  596 |    register unsigned int i;
      |                          ^
In file included from constants.h:28,
                 from structs.h:30,
                 from rep.h:45,
                 from support.h:236:
autocomm.h:166:60: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); }
      |                                                            ^~~~~~~~~
gs.cc:641:10: note: in expansion of macro ‘assertQuatOK’
  641 |          assertQuatOK( q_father );
      |          ^~~~~~~~~~~~
autocomm.h:166:60: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); }
      |                                                            ^~~~~~~~~
gs.cc:652:10: note: in expansion of macro ‘assertQuatOK’
  652 |          assertQuatOK( q_mother );
      |          ^~~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::crossover_arithmetic(Genotype&, Genotype&, const Real&, int, FILE*)’:
gs.cc:877:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  877 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::selection_proportional(Population&, Individual*, int, FILE*)’:
gs.cc:983:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  983 |    register unsigned int i=0, start_index = 0;
      |                          ^
gs.cc:983:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  983 |    register unsigned int i=0, start_index = 0;
      |                               ^~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::selection_tournament(Population&, Individual*, int, FILE*)’:
gs.cc:1262:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1262 |    register unsigned int i = 0, start_index = 0;
      |                          ^
gs.cc:1262:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1262 |    register unsigned int i = 0, start_index = 0;
      |                                 ^~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::selection_linear_ranking(Population&, Individual*, int, FILE*)’:
gs.cc:1327:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1327 |    register unsigned int i = 0, start_index = 0;
      |                          ^
gs.cc:1327:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1327 |    register unsigned int i = 0, start_index = 0;
      |                                 ^~~~~~~~~~~
gs.cc: In member function ‘virtual int Genetic_Algorithm::search(Population&, Eval*, int, FILE*)’:
gs.cc:1420:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1420 |    register unsigned int i;
      |                          ^
In file included from initautodock.h:31,
                 from initautodock.cc:36:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
initautodock.cc: In function ‘void initautodock(const char (*)[128], Real (*)[3], const Real (*)[3], int, int, State*, const int (*)[2048], const Real (*)[3], int, int, const GridMapSetInfo*)’:
initautodock.cc:76:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   76 |     register int   xyz = 0;
      |                    ^~~
initautodock.cc:77:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   77 |     register int   i = 0;
      |                    ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-input_state.o `test -f 'input_state.cc' || echo './'`input_state.cc
In file included from input_state.h:30,
                 from input_state.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
input_state.cc: In function ‘int input_state(State*, FILE*, const char*, int, int*, Real*, Real*, char*)’:
input_state.cc:70:25: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   70 |             (void) fgets(myline, LINELEN, fp);
      |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-investigate.o `test -f 'investigate.cc' || echo './'`investigate.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-linpack.o `test -f 'linpack.cc' || echo './'`linpack.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from investigate.h:33,
                 from investigate.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
investigate.cc: In function ‘void investigate(int, int*, GroupEnergy*, const Real*, const Real*, const Real*, Boole, Real (*)[3], const Real (*)[3], const EnergyTables*, int, MapType*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], Boole, const short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, Real (*)[8][2], int*, Boole, Boole, const char*, int, int, const Real&, const Real&, const int*, Boole, const Real&, const Real&, const Real&, GridMapSetInfo*, Boole, Boole, Boole, int, int, int, FILE*)’:
investigate.cc:103:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  103 |     register int Test = -1;
      |                  ^~~~
investigate.cc:106:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  106 |     register int i = 0;
      |                  ^
investigate.cc:120:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  120 |     register int NumOutside = 0;
      |                  ^~~~~~~~~~
investigate.cc:121:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  121 |     register int LocalTest = 0;
      |                  ^~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-ls.o `test -f 'ls.cc' || echo './'`ls.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-mapping.o `test -f 'mapping.cc' || echo './'`mapping.cc
In file included from eval.h:38,
                 from support.h:237,
                 from ls.h:40,
                 from ls.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
ls.cc: In function ‘Phenotype genPh(const Phenotype&, const Real&, const Real*, Real*, int, FILE*)’:
ls.cc:46:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |    register unsigned int i, index = 0;
      |                          ^
ls.cc:46:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |    register unsigned int i, index = 0;
      |                             ^~~~~
ls.cc: In member function ‘virtual Boole Solis_Wets::SW(Phenotype&, int, FILE*)’:
ls.cc:88:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                          ^
ls.cc:88:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                             ^
ls.cc:88:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                                ^~~~~~~~~~~~~
ls.cc:88:51: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                                                   ^~~~~~~~~~~~
ls.cc:89:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |    register Real temp_rho = rho;
      |                  ^~~~~~~~
ls.cc:92:9: warning: unused variable ‘thisQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |         ^~~~~~~~
ls.cc:92:19: warning: unused variable ‘prevQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |                   ^~~~~~~~
ls.cc:92:29: warning: unused variable ‘startQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |                             ^~~~~~~~~
ls.cc: In member function ‘virtual Boole Pseudo_Solis_Wets::SW(Phenotype&, int, FILE*)’:
ls.cc:248:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                          ^
ls.cc:248:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                             ^
ls.cc:248:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                ^~~~~~~~~~~~~
ls.cc:248:51: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                                   ^~~~~~~~~~~~
ls.cc:248:70: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from eval.h:38,
                 from support.h:237,
                 from mapping.cc:37:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-mingw_getrusage.o `test -f 'mingw_getrusage.cc' || echo './'`mingw_getrusage.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-minmeanmax.o `test -f 'minmeanmax.cc' || echo './'`minmeanmax.cc
In file included from eval.h:38,
                 from support.h:237,
                 from minmeanmax.cc:39:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
minmeanmax.cc: In function ‘void minmeanmax(FILE*, const Population&, int, const GridMapSetInfo*)’:
minmeanmax.cc:51:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                 ^
minmeanmax.cc:51:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                      ^
minmeanmax.cc:51:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                           ^
minmeanmax.cc:56:76: warning: variable ‘best’ set but not used [-Wunused-but-set-variable=]
   56 |    double minimum[ 7+MAX_TORS ], sum[ 7+MAX_TORS ], maximum[ 7+MAX_TORS ], best[ 7+MAX_TORS ];
      |                                                                            ^~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-mkNewState.o `test -f 'mkNewState.cc' || echo './'`mkNewState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-mkTorTree.o `test -f 'mkTorTree.cc' || echo './'`mkTorTree.cc
In file included from mkNewState.h:31,
                 from mkNewState.cc:33:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
mkNewState.cc: In function ‘void mkNewState(State*, const State*, State*, const Real (*)[3], const int (*)[2048], int, Real (*)[3], const Real (*)[3], int, const Real&, const Real&, const Real&, const Real (*)[8][2], const int*, int, int, FILE*)’:
mkNewState.cc:56:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   56 |     register int i;
      |                  ^
mkTorTree.cc: In function ‘void mkTorTree(const int*, const int (*)[2048], const char (*)[256], int, int (*)[2048], int*, int*, const char*, const char (*)[5], Boole*, int*, int*, Real*, Real*, int*, int*, int, int, FILE*)’:
mkTorTree.cc:88:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |     register int   i = 0;
      |                    ^
mkTorTree.cc:89:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |     register int   j = 0;
      |                    ^
mkTorTree.cc:90:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int   k = 0;
      |                    ^
mkTorTree.cc: At global scope:
mkTorTree.cc:456:5: warning: ‘int check_atomnumber(int, const int*, int, int, FILE*)’ defined but not used [-Wunused-function]
  456 | int check_atomnumber( const int number, const int *atomnumber, const int nrecord,
      |     ^~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-mkRandomState.o `test -f 'mkRandomState.cc' || echo './'`mkRandomState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-nonbonds.o `test -f 'nonbonds.cc' || echo './'`nonbonds.cc
mkRandomState.cc: In function ‘State mkRandomState(int, Real (*)[8][2], int*, GridMapSetInfo*)’:
mkRandomState.cc:44:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   44 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-openfile.o `test -f 'openfile.cc' || echo './'`openfile.cc
In file included from nonbonds.cc:35:
mdist.h: In function ‘void mdist()’:
mdist.h:45:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   45 |         register int i,j;
      |                      ^
mdist.h:45:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   45 |         register int i,j;
      |                        ^
mdist.h:32:25: warning: operation on ‘mindist[0][0]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:89:5: note: in expansion of macro ‘set_minmax’
   89 |     set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[0][0]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:89:5: note: in expansion of macro ‘set_minmax’
   89 |     set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[1][1]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:96:5: note: in expansion of macro ‘set_minmax’
   96 |     set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[1][1]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:96:5: note: in expansion of macro ‘set_minmax’
   96 |     set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[2][2]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:102:5: note: in expansion of macro ‘set_minmax’
  102 |     set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[2][2]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:102:5: note: in expansion of macro ‘set_minmax’
  102 |     set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[3][3]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:107:5: note: in expansion of macro ‘set_minmax’
  107 |     set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming.
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[3][3]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:107:5: note: in expansion of macro ‘set_minmax’
  107 |     set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming.
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[4][4]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:111:5: note: in expansion of macro ‘set_minmax’
  111 |     set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[4][4]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:111:5: note: in expansion of macro ‘set_minmax’
  111 |     set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[5][5]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:114:5: note: in expansion of macro ‘set_minmax’
  114 |     set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[5][5]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:114:5: note: in expansion of macro ‘set_minmax’
  114 |     set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[6][6]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:116:5: note: in expansion of macro ‘set_minmax’
  116 |     set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[6][6]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:116:5: note: in expansion of macro ‘set_minmax’
  116 |     set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515
      |     ^~~~~~~~~~
nonbonds.cc: In function ‘void printbonds(int, const int*, const int (*)[16], const char*, int, int, FILE*)’:
nonbonds.cc:250:13: warning: ‘?:’ using integer constants in boolean context [-Wint-in-bool-context]
  248 |         for (int j=0; j<
      |                       ~~
  249 |             B_print_all_bonds
      |             ~~~~~~~~~~~~~~~~~
  250 |             ? MAX_NBONDS // loop over all the slots for this atom's "j" bonds
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  251 |             : nbonds[i]; // loop over this atom's "j" bonds
      |             ~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-output_state.o `test -f 'output_state.cc' || echo './'`output_state.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-parse_dpf_line.o `test -f 'parse_dpf_line.cc' || echo './'`parse_dpf_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-parse_param_line.o `test -f 'parse_param_line.cc' || echo './'`parse_param_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-parse_PDBQT_line.o `test -f 'parse_PDBQT_line.cc' || echo './'`parse_PDBQT_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-parse_trj_line.o `test -f 'parse_trj_line.cc' || echo './'`parse_trj_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-parsetypes.o `test -f 'parsetypes.cc' || echo './'`parsetypes.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-print_2x.o `test -f 'print_2x.cc' || echo './'`print_2x.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-print_atomic_energies.o `test -f 'print_atomic_energies.cc' || echo './'`print_atomic_energies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-print_avsfld.o `test -f 'print_avsfld.cc' || echo './'`print_avsfld.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-writePDBQT.o `test -f 'writePDBQT.cc' || echo './'`writePDBQT.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-print_rem.o `test -f 'print_rem.cc' || echo './'`print_rem.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-printdate.o `test -f 'printdate.cc' || echo './'`printdate.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from writePDBQT.h:34,
                 from writePDBQT.cc:35:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-printEnergies.o `test -f 'printEnergies.cc' || echo './'`printEnergies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-printhms.o `test -f 'printhms.cc' || echo './'`printhms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-prClusterHist.o `test -f 'prClusterHist.cc' || echo './'`prClusterHist.cc
prClusterHist.cc: In function ‘void prClusterHist(int, int, const Real&, const int*, const int (*)[2000], const Real*, const Real (*)[2000], const Real*, int, FILE*)’:
prClusterHist.cc:51:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |     register int  Rank=0,
      |                   ^~~~
prClusterHist.cc:52:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   52 |                   j=0;
      |                   ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-prInitialState.o `test -f 'prInitialState.cc' || echo './'`prInitialState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-prTorConList.o `test -f 'prTorConList.cc' || echo './'`prTorConList.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from writePDBQT.h:34,
                 from prInitialState.cc:36:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
prInitialState.cc: In function ‘void prInitialState(const EnergyBreakdown*, int, int, const Real (*)[3], const char (*)[128], const int*, EnergyComponent*, const Real*, int, Boole, Unbound_Model, int, FILE*)’:
prInitialState.cc:59:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   59 |     register int i = 0;
      |                  ^
prTorConList.cc: In function ‘void prTorConList(int, const Boole*, const short unsigned int (*)[256], Real (*)[8][2], int*, int, FILE*)’:
prTorConList.cc:64:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-pso.o `test -f 'pso.cc' || echo './'`pso.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-qmultiply.o `test -f 'qmultiply.cc' || echo './'`qmultiply.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from pso.h:4,
                 from pso.cc:1:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
In file included from qmultiply.cc:35:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qmultiply.cc:42:44: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   42 |                 register const Quat *const ql,   //left
      |                                            ^~
qmultiply.cc:43:44: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   43 |                 register const Quat *const qr )  //right
      |                                            ^~
qmultiply.cc: In function ‘void qmultiply(Quat*, const Quat*, const Quat*)’:
qmultiply.cc:66:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                     ^
qmultiply.cc:66:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                       ^
qmultiply.cc:66:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                         ^
qmultiply.cc:66:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                           ^
qmultiply.cc: In function ‘AxisAngle QuatToAxisAngle(const Quat&)’:
qmultiply.cc:224:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  224 |         register double angle = 2. * acos( input.w );
      |                         ^~~~~
qmultiply.cc: In function ‘Quat inverse(const Quat&)’:
qmultiply.cc:356:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  356 |     register Quat conj, inv;
      |                   ^~~~
qmultiply.cc:356:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  356 |     register Quat conj, inv;
      |                         ^~~
qmultiply.cc:357:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  357 |     register double inv_squared_magnitude;
      |                     ^~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-qtransform.o `test -f 'qtransform.cc' || echo './'`qtransform.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-quicksort.o `test -f 'quicksort.cc' || echo './'`quicksort.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-ranlib.o `test -f 'ranlib.cc' || echo './'`ranlib.cc
In file included from qtransform.h:35,
                 from qtransform.cc:32:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qtransform.cc: In function ‘void qtransform(const Coord&, const Quat&, Real (*)[3], int)’:
qtransform.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int a;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-rep.o `test -f 'rep.cc' || echo './'`rep.cc
rep.cc: In constructor ‘IntVector::IntVector(int)’:
rep.cc:77:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   77 |    register int i;
      |                 ^
rep.cc: In constructor ‘IntVector::IntVector(int, int, int)’:
rep.cc:95:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   95 |    register int i;
      |                 ^
rep.cc: In copy constructor ‘IntVector::IntVector(const IntVector&)’:
rep.cc:129:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  129 |    for (register unsigned int i=0; i<number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& IntVector::operator=(const Representation&)’:
rep.cc:237:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  237 |    register unsigned int i;
      |                          ^
rep.cc: In constructor ‘RealVector::RealVector(int, const double&, const double&, const double&)’:
rep.cc:329:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  329 |    register int i=0;
      |                 ^
rep.cc: In copy constructor ‘RealVector::RealVector(const RealVector&)’:
rep.cc:428:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 |    for (register unsigned int i=0; i<original.number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& RealVector::operator=(const Representation&)’:
rep.cc:553:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  553 |    register unsigned int i;
      |                          ^
rep.cc: In copy constructor ‘ConstrainedRealVector::ConstrainedRealVector(const ConstrainedRealVector&)’:
rep.cc:641:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  641 |    for (register unsigned int i=0; i<original.number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘void ConstrainedRealVector::normalize()’:
rep.cc:753:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  753 |       register unsigned int i;
      |                             ^
rep.cc:754:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  754 |       register double tempsum = 0.0, hypotenuse;
      |                       ^~~~~~~
rep.cc:754:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  754 |       register double tempsum = 0.0, hypotenuse;
      |                                      ^~~~~~~~~~
rep.cc: In member function ‘virtual Representation& ConstrainedRealVector::operator=(const Representation&)’:
rep.cc:812:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  812 |    register unsigned int i;
      |                          ^
rep.cc: In copy constructor ‘BitVector::BitVector(const BitVector&)’:
rep.cc:900:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  900 |    for (register unsigned int i=0; i<number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& BitVector::operator=(const Representation&)’:
rep.cc:994:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  994 |    register unsigned int i;
      |                          ^
ranlib.cc: In function ‘ignpoi(double const&)’:
ranlib.cc:1144:21: warning: ‘m’ may be used uninitialized [-Wmaybe-uninitialized]
 1144 |     if(u > 0.458) j = IMIN(l,m);
      |                   ~~^~~~~~~~~~~
ranlib.cc:995:33: note: ‘m’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |                                 ^
ranlib.cc:1136:5: warning: ‘p’ may be used uninitialized [-Wmaybe-uninitialized]
 1136 |     if(u <= p0) return ignpoi;
      |     ^~
ranlib.cc:996:58: note: ‘p’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                          ^
ranlib.cc:1023:5: warning: ‘l’ may be used uninitialized [-Wmaybe-uninitialized]
 1023 |     if(ignpoi >= l) return ignpoi;
      |     ^~
ranlib.cc:995:31: note: ‘l’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |                               ^
ranlib.cc:1030:9: warning: ‘d’ may be used uninitialized [-Wmaybe-uninitialized]
 1030 |     if(d*u >= difmuk*difmuk*difmuk) return ignpoi;
      |        ~^~
ranlib.cc:996:26: note: ‘d’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                          ^
ranlib.cc:1017:7: warning: ‘s’ may be used uninitialized [-Wmaybe-uninitialized]
 1017 |     g = mu+s*snorm();
      |     ~~^~~~~~~~~~~~~~
ranlib.cc:996:71: note: ‘s’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                                       ^
ranlib.cc:1092:5: warning: ‘ignpoi’ may be used uninitialized [-Wmaybe-uninitialized]
 1092 |     if(ignpoi >= 10) goto S80;
      |     ^~
ranlib.cc:995:14: note: ‘ignpoi’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |              ^~~~~~
ranlib.cc:1104:7: warning: ‘difmuk’ may be used uninitialized [-Wmaybe-uninitialized]
 1104 |     v = difmuk/fk;
      |     ~~^~~~~~~~~~~
ranlib.cc:996:32: note: ‘difmuk’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                ^~~~~~
ranlib.cc:1102:9: warning: ‘fk’ may be used uninitialized [-Wmaybe-uninitialized]
 1102 |     del = 8.333333E-2/fk;
      |     ~~~~^~~~~~~~~~~~~~~~
ranlib.cc:996:41: note: ‘fk’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                         ^~
ranlib.cc:1116:38: warning: ‘c0’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                ~~~~~~~~~~~~~~~~~~~~~~^~~~
ranlib.cc:996:14: note: ‘c0’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |              ^~
ranlib.cc:1116:31: warning: ‘c1’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                 ~~~~~~~~~~~~~~^~~~
ranlib.cc:996:17: note: ‘c1’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                 ^~
ranlib.cc:1116:24: warning: ‘c2’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                  ~~~~~~^~~~
ranlib.cc:996:20: note: ‘c2’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                    ^~
ranlib.cc:1116:24: warning: ‘c3’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                  ~~~~~~^~~~
ranlib.cc:996:23: note: ‘c3’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                       ^~
ranlib.cc:1116:8: warning: ‘omega’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |     ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ranlib.cc:996:52: note: ‘omega’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                    ^~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-scauchy.o `test -f 'scauchy.cc' || echo './'`scauchy.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-setflags.o `test -f 'setflags.cc' || echo './'`setflags.cc
scauchy.cc: In function ‘Real scauchy2()’:
scauchy.cc:81:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |               ^
scauchy.cc:81:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                  ^
scauchy.cc:81:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                     ^~
scauchy.cc:81:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                         ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-simanneal.o `test -f 'simanneal.cc' || echo './'`simanneal.cc
setflags.cc: In function ‘setflags(int, char const**, char const*)’:
setflags.cc:293:20: warning: ‘__strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  293 |             strncpy(logFileName, dock_param_fn, strlen(dock_param_fn)-4);
      |                    ^
setflags.cc:293:55: note: length computed here
  293 |             strncpy(logFileName, dock_param_fn, strlen(dock_param_fn)-4);
      |                                                 ~~~~~~^~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-sort_enrg.o `test -f 'sort_enrg.cc' || echo './'`sort_enrg.cc
In file included from getInitialState.h:31,
                 from simanneal.h:33,
                 from simanneal.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
simanneal.cc: In function ‘void simanneal(int*, int, int*, GroupEnergy*, int, const Real&, const char (*)[128], Real*, Real*, Real*, Boole, Real (*)[3], Real (*)[3], const char*, EnergyTables*, Real*, Boole, EnergyComponent*, int, int, FourByteLong (*)[2], const clock_t&, MapType*, int, int, NonbondParam*, int, int, State, State*, const Real&, Boole, const Real&, Boole, const char*, const Real*, const Real&, Boole, const Real&, const tms&, const int (*)[2048], const Real&, Boole, const Real&, const char*, int, int, int, const Real&, Boole, const Real&, const int*, Real (*)[3], Boole, Boole, int, int, const Real&, const Real&, Boole, const Real&, Boole, const char*, Boole, short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, const Real (*)[8][2], const int*, Boole, Boole, Boole, const Real&, const Real&, int, int, const int*, Boole, const Real&, const Real&, const ParameterEntry*, const Real&, GridMapSetInfo*, Boole, Boole, const char (*)[256], Unbound_Model, int, FILE*)’:
simanneal.cc:188:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  188 |     register int i = 0;
      |                  ^
simanneal.cc:189:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  189 |     register int nacc = 0;
      |                  ^~~~
simanneal.cc:190:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  190 |     register int nAcc = 0;
      |                  ^~~~
simanneal.cc:191:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  191 |     register int nAccProb = 0;
      |                  ^~~~~~~~
simanneal.cc:192:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  192 |     register int nedge = 0;
      |                  ^~~~~
simanneal.cc:193:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  193 |     register int nrej = 0;
      |                  ^~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-stack.o `test -f 'stack.cc' || echo './'`stack.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-stop.o `test -f 'stop.cc' || echo './'`stop.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-strindex.o `test -f 'strindex.cc' || echo './'`strindex.cc
strindex.cc: In function ‘int strindex(const char*, const char*)’:
strindex.cc:54:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                  ^
strindex.cc:54:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                    ^~
strindex.cc:54:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                       ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-success.o `test -f 'success.cc' || echo './'`success.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-support.o `test -f 'support.cc' || echo './'`support.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-swap.o `test -f 'swap.cc' || echo './'`swap.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-threadlog.o `test -f 'threadlog.cc' || echo './'`threadlog.cc
threadlog.cc:72: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
   72 | #pragma omp critical
In file included from eval.h:38,
                 from support.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
support.cc: In copy constructor ‘Population::Population(const Population&)’:
support.cc:52:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   52 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::msort(int)’:
support.cc:147:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  147 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::print(FILE*, int) const’:
support.cc:187:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  187 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::printPopulationAsStates(FILE*, int, int) const’:
support.cc:348:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  348 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::printPopulationAsCoordsEnergies(FILE*, int, int) const’:
support.cc:388:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  388 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::set_eob(int*)’:
support.cc:433:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  433 |    for (register int i=0; i<MAX_TORS; i++) {
      |                      ^
support.cc: In constructor ‘Genotype::Genotype(unsigned int, Representation**)’:
support.cc:456:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                          ^
support.cc:456:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                             ^
support.cc:456:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                                ^
support.cc: In copy constructor ‘Genotype::Genotype(const Genotype&)’:
support.cc:484:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  484 |    register unsigned int i;
      |                          ^
support.cc: In destructor ‘Genotype::~Genotype()’:
support.cc:512:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  512 |    register unsigned int i;
      |                          ^
support.cc: In constructor ‘Phenotype::Phenotype(unsigned int, Representation**, Eval*)’:
support.cc:674:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                          ^
support.cc:674:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                             ^
support.cc:674:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                                ^
support.cc: In copy constructor ‘Phenotype::Phenotype(const Phenotype&)’:
support.cc:700:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  700 |    register unsigned int i;
      |                          ^
support.cc: In member function ‘Phenotype& Phenotype::operator=(const Phenotype&)’:
support.cc:731:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  731 |    register unsigned int i;
      |                          ^
support.cc: In destructor ‘Phenotype::~Phenotype()’:
support.cc:781:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  781 |    register unsigned int i;
      |                          ^
support.cc: In member function ‘Population& Population::operator=(const Population&)’:
support.cc:968:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  968 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-timesys.o `test -f 'timesys.cc' || echo './'`timesys.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-timesyshms.o `test -f 'timesyshms.cc' || echo './'`timesyshms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-torNorVec.o `test -f 'torNorVec.cc' || echo './'`torNorVec.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-torsion.o `test -f 'torsion.cc' || echo './'`torsion.cc
torNorVec.cc: In function ‘void torNorVec(const Real (*)[3], int, const int (*)[2048], Real (*)[3], int, FILE*)’:
torNorVec.cc:47:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   47 |     register int xyz = 0;
      |                  ^~~
torNorVec.cc:48:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int j = 0;
      |                  ^
torNorVec.cc: In function ‘void update_torsion_vectors(const Real (*)[3], int, const int (*)[2048], Real (*)[3], Molecule*, int, int, FILE*)’:
torNorVec.cc:104:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  104 |     register int i=0, j=0;
      |                  ^
torNorVec.cc:104:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  104 |     register int i=0, j=0;
      |                       ^
torsion.cc: In function ‘void torsion(const State&, Real (*)[3], const Real (*)[3], const int (*)[2048], int)’:
torsion.cc:62:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |     register double crdtemp[SPACE];
      |                     ^~~~~~~
torsion.cc:63:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   63 |     register double  d[SPACE];
      |                      ^
torsion.cc:64:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register double sv[SPACE];
      |                     ^~
torsion.cc:65:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register double ov[SPACE];
      |                     ^~
torsion.cc:66:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double  k[SPACE][SPACE];
      |                      ^
torsion.cc:67:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                     ^
torsion.cc:67:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                        ^
torsion.cc:67:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                           ^
torsion.cc:67:30: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                              ^~~
torsion.cc:67:35: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                                   ^~~~~~~~
torsion.cc:68:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                  ^
torsion.cc:68:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                     ^
torsion.cc:68:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                        ^~~~~
torsion.cc:68:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                               ^~~~~~
torsion.cc:68:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                                       ^~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-trilinterp.o `test -f 'trilinterp.cc' || echo './'`trilinterp.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-usage.o `test -f 'usage.cc' || echo './'`usage.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-weedbonds.o `test -f 'weedbonds.cc' || echo './'`weedbonds.cc
trilinterp.cc: In function ‘Real trilinterp(int, int, const Real (*)[3], const Real*, const Real*, const int*, MapType*, const GridMapSetInfo*, const int*, EnergyComponent*, EnergyComponent*, EnergyComponent*)’:
trilinterp.cc:88:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |     register int i;               /* i-th atom */
      |                  ^
trilinterp.cc:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                         ^
trilinterp.cc:92:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                            ^
trilinterp.cc:92:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                               ^
trilinterp.cc:93:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                         ^
trilinterp.cc:93:30: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                              ^
trilinterp.cc:93:35: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                                   ^
trilinterp.cc:96:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   96 |         register int AtomType;        /* atom type */
      |                      ^~~~~~~~
trilinterp.cc:97:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                      ^~
trilinterp.cc:97:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                           ^~
trilinterp.cc:97:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                                ^~
trilinterp.cc:98:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                      ^~
trilinterp.cc:98:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                           ^~
trilinterp.cc:98:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                                ^~
trilinterp.cc:99:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                         ^
trilinterp.cc:99:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                           ^
trilinterp.cc:99:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                             ^
trilinterp.cc:98:22: warning: variable ‘u1’ set but not used [-Wunused-but-set-variable=]
   98 |         register int u1,  v1,  w1;
      |                      ^~
trilinterp.cc:98:27: warning: variable ‘v1’ set but not used [-Wunused-but-set-variable=]
   98 |         register int u1,  v1,  w1;
      |                           ^~
trilinterp.cc:98:32: warning: variable ‘w1’ set but not used [-Wunused-but-set-variable=]
   98 |         register int u1,  v1,  w1;
      |                                ^~
weedbonds.cc: In function ‘void weedbonds(int, const char (*)[5], const int*, int, const int (*)[2048], int (*)[2048], int*, NonbondParam*, int*, int, const int*, int, int, FILE*)’:
weedbonds.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int i = 0;
      |                  ^
weedbonds.cc:66:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register int j = 0;
      |                  ^
weedbonds.cc:67:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register int k = 0;
      |                  ^
weedbonds.cc: In function ‘void print_nonbonds(int, const char (*)[5], const int*, int, const int (*)[2048], int (*)[2048], int, const NonbondParam*, const int*, int, FILE*)’:
weedbonds.cc:252:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  252 |     register int i = 0;
      |                  ^
weedbonds.cc:253:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  253 |     register int j = 0;
      |                  ^
weedbonds.cc:254:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  254 |     register int k = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-warn_bad_file.o `test -f 'warn_bad_file.cc' || echo './'`warn_bad_file.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-coliny.o `test -f 'coliny.cc' || echo './'`coliny.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-eintcal.o `test -f 'eintcal.cc' || echo './'`eintcal.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-eintcalPrint.o `test -f 'eintcalPrint.cc' || echo './'`eintcalPrint.cc
eintcal.cc: In function ‘Real eintcal(const NonbondParam*, const EnergyTables*, const Real (*)[3], int, int*, GroupEnergy*, Boole, Boole, const Real&, const Real*, Boole, Boole, int, FILE*)’:
eintcal.cc:206:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  206 |             register double r2;
      |                             ^~
In file included from eintcalPrint.cc:29:
./eintcal.cc: In function ‘Real eintcalPrint(const NonbondParam*, const EnergyTables*, const Real (*)[3], int, int*, GroupEnergy*, Boole, Boole, const Real&, const Real*, Boole, Boole, int, const int*, const char (*)[3], int, FILE*)’:
./eintcal.cc:206:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  206 |             register double r2;
      |                             ^~
./eintcal.cc:130:12: warning: variable ‘total_e_vdW_Hb’ set but not used [-Wunused-but-set-variable=]
  130 |     double total_e_vdW_Hb=0.0L;
      |            ^~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-intnbtable.o `test -f 'intnbtable.cc' || echo './'`intnbtable.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4-nbe.o `test -f 'nbe.cc' || echo './'`nbe.cc
intnbtable.cc: In function ‘void intnbtable(Boole*, int, int, const GridMapSetInfo*, const Real&, const Real&, int, int, Boole, const Real&, Linear_FE_Model, const double&, EnergyTables*, Boole, FILE*, int)’:
intnbtable.cc:83:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   83 |     register int i;
      |                  ^
intnbtable.cc: In function ‘void setup_distdepdiel(FILE*, int, EnergyTables*)’:
intnbtable.cc:268:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  268 |     register int i=0;
      |                  ^
intnbtable.cc:269:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  269 |     register double distance=0.0L;
      |                     ^~~~~~~~
nbe.cc: In function ‘void nbe(const GridMapSetInfo*, const EnergyTables*, int, int, FILE*)’:
nbe.cc:64:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register int i = 0;
      |                  ^
nbe.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int j = 0;
      |                  ^
nbe.cc:66:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register int k = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-main.o `test -f 'main.cc' || echo './'`main.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-alea.o `test -f 'alea.cc' || echo './'`alea.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-analysis.o `test -f 'analysis.cc' || echo './'`analysis.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from hybrids.h:40,
                 from main.cc:98:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
main.cc: In function ‘int main(int, const char**)’:
main.cc:480:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  480 | register int i = 0;
      |              ^
main.cc:481:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  481 | register int j = 0;
      |              ^
main.cc:482:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  482 | register int k = 0;
      |              ^
main.cc:484:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  484 | register int xyz = 0;
      |              ^~~
main.cc:3282:21: warning: unused variable ‘thread_num’ [-Wunused-variable]
 3282 |                 int thread_num=omp_get_thread_num();
      |                     ^~~~~~~~~~
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from analysis.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
analysis.cc: In function ‘void analysis(int, int*, GroupEnergy*, int, const char (*)[128], const Real*, const Real*, const Real*, Boole, const Real&, const Real (*)[3], const EnergyTables*, MapType*, const Real*, int, int, const NonbondParam*, int, int, State*, const char*, const Real*, Boole, Boole, const int (*)[2048], const int*, const Real (*)[3], const char*, const Real&, Boole, int, const int*, Boole, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Boole, Unbound_Model, Boole, int, int, FILE*)’:
analysis.cc:138:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  138 |     register int   i = 0;
      |                    ^
analysis.cc:139:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  139 |     register int   j = 0;
      |                    ^
analysis.cc:140:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  140 |     register int   k = 0;
      |                    ^
analysis.cc:141:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  141 |     register int   t = 0;
      |                    ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-atom_parameter_manager.o `test -f 'atom_parameter_manager.cc' || echo './'`atom_parameter_manager.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-banner.o `test -f 'banner.cc' || echo './'`banner.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-bestpdb.o `test -f 'bestpdb.cc' || echo './'`bestpdb.cc
bestpdb.cc: In function ‘void bestpdb(int, const int*, const int (*)[2000], const Real*, const Real (*)[2048][3], const char (*)[128], int, Boole, const Real*, int, FILE*)’:
bestpdb.cc:58:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   58 |     register int  i=0,
      |                   ^
bestpdb.cc:59:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   59 |                   j=0,
      |                   ^
bestpdb.cc:60:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   60 |                   k=0,
      |                   ^
bestpdb.cc:61:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |                   confnum=0;
      |                   ^~~~~~~
main.cc:1250:89: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 313 [-Wformat-overflow=]
 1250 |                     prStr( error_message,"%s:         Edit the parameter library file \"%s\" and try again.\n", programname, FN_parameter_library );
      |                                                                                         ^~                                   ~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from /usr/include/c++/16/cstdio:47,
                 from /usr/include/c++/16/ext/string_conversions.h:47,
                 from /usr/include/c++/16/bits/basic_string.h:4465,
                 from /usr/include/c++/16/string:57,
                 from main.cc:71:
In function ‘sprintf’,
    inlined from ‘main’ at main.cc:1250:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 61 or more bytes (assuming 4156) into a destination of size 356
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
main.cc: In function ‘main’:
main.cc:2367:82: warning: ‘%s’ directive writing up to 511 bytes into a region of size 320 [-Wformat-overflow=]
 2367 |                     prStr( error_message,"%s: ERROR:  Unknown ligand atom type \"%s\"; add parameters for it to the parameter library first!\n", programname, param[i]);
      |                                                                                  ^~
In function ‘sprintf’,
    inlined from ‘main’ at main.cc:2367:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 94 or more bytes (assuming 605) into a destination of size 356
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
bestpdb.cc:123:62: warning: ‘%4d’ directive writing between 4 and 10 bytes into a region of size 9 [-Wformat-overflow=]
  123 |                     sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11],
      |                                                              ^~~
bestpdb.cc:123:53: note: directive argument in the range [1, 2147483647]
  123 |                     sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11],
      |                                                     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from bestpdb.cc:33:
In function ‘sprintf’,
    inlined from ‘bestpdb(int, int const*, int const (*) [2000], double const*, double const (*) [2048][3], char const (*) [128], int, int, double const*, int, _IO_FILE*)’ at bestpdb.cc:123:28:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 20 and 26 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-calculateEnergies.o `test -f 'calculateEnergies.cc' || echo './'`calculateEnergies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-call_glss.o `test -f 'call_glss.cc' || echo './'`call_glss.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from call_glss.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
call_glss.cc: In function ‘State call_glss(Global_Search*, Local_Search*, const State&, unsigned int, unsigned int, int, FILE*, const Output_pop_stats&, Molecule*, Eval*, Boole, Boole, Boole, const GridMapSetInfo*, const char*, int*)’:
call_glss.cc:259:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  259 |     register unsigned int i;
      |                           ^
call_glss.cc:260:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  260 |     register int j;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-call_ls.o `test -f 'call_ls.cc' || echo './'`call_ls.cc
In file included from eval.h:38,
                 from support.h:237,
                 from ls.h:40,
                 from call_ls.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
call_ls.cc: In function ‘Representation** cnv_state_to_rep(const State&)’:
call_ls.cc:50:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   50 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-center_ligand.o `test -f 'center_ligand.cc' || echo './'`center_ligand.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-changeState.o `test -f 'changeState.cc' || echo './'`changeState.cc
In file included from changeState.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
changeState.cc: In function ‘State changeState(const State&, const Real&, const Real&, int, const Real (*)[8][2], const int*)’:
changeState.cc:46:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-check_header_float.o `test -f 'check_header_float.cc' || echo './'`check_header_float.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-check_header_int.o `test -f 'check_header_int.cc' || echo './'`check_header_int.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-check_header_line.o `test -f 'check_header_line.cc' || echo './'`check_header_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-cluster_analysis.o `test -f 'cluster_analysis.cc' || echo './'`cluster_analysis.cc
cluster_analysis.cc: In function ‘int cluster_analysis(const Real&, int (*)[2000], int*, const int*, int, int, const int*, const Real (*)[2048][3], const Real (*)[3], const Real*, Real (*)[2000], Boole, Boole, Real (*)[3], int, Real*, Boole, int)’:
cluster_analysis.cc:61:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |     register int compare = 0,
      |                  ^~~~~~~
cluster_analysis.cc:62:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |                  i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-clmode.o `test -f 'clmode.cc' || echo './'`clmode.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-cnv_state_to_coords.o `test -f 'cnv_state_to_coords.cc' || echo './'`cnv_state_to_coords.cc
In file included from clmode.h:40,
                 from clmode.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
clmode.cc: In function ‘void clmode(int, const Real&, const char*, const clock_t&, const tms&, Boole, const char*, const Real (*)[3], const Real*, Boole, Boole, const char*, Boole, int, int, FILE*)’:
clmode.cc:62:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |     register int xyz = 0;
      |                  ^~~
clmode.cc:89:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |     register int i = 0;
      |                  ^
clmode.cc:90:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int j = 0;
      |                  ^
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from cnv_state_to_coords.cc:37:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
clmode.cc:210:28: warning: ‘__strncpy_chk’ output may be truncated copying 30 bytes from a string of length 255 [-Wstringop-truncation]
  210 |                     strncpy( atomstuff[atomCounter], line, (size_t)30 );
      |                            ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-com.o `test -f 'com.cc' || echo './'`com.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-conformation_sampler.o `test -f 'conformation_sampler.cc' || echo './'`conformation_sampler.cc
In file included from eval.h:38,
                 from support.h:237,
                 from conformation_sampler.h:29,
                 from conformation_sampler.cc:27:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
conformation_sampler.cc: In constructor ‘ConformationSampler::ConformationSampler(const State&, int, Eval*, int, FILE*)’:
conformation_sampler.cc:99:10: warning: variable ‘base_q’ set but not used [-Wunused-but-set-variable=]
   99 |     Quat base_q = probe_point.readQuat();
      |          ^~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-dimLibrary.o `test -f 'dimLibrary.cc' || echo './'`dimLibrary.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from pso.h:4,
                 from dimLibrary.cc:6:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
dimLibrary.cc: In function ‘void copyDimension(State*, const Position&)’:
dimLibrary.cc:17:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   17 |         register int i, j;
      |                      ^
dimLibrary.cc:17:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   17 |         register int i, j;
      |                         ^
dimLibrary.cc: In function ‘void copyState2Dimension(Position*, const State&)’:
dimLibrary.cc:34:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   34 |         register int i, j;
      |                      ^
dimLibrary.cc:34:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   34 |         register int i, j;
      |                         ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-distdepdiel.o `test -f 'distdepdiel.cc' || echo './'`distdepdiel.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-stateLibrary.o `test -f 'stateLibrary.cc' || echo './'`stateLibrary.cc
In file included from stateLibrary.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
stateLibrary.cc: In function ‘void initialiseState(State*)’:
stateLibrary.cc:40:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   40 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘void copyState(State*, const State&)’:
stateLibrary.cc:61:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘void printState(FILE*, State, int)’:
stateLibrary.cc:90:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘int checkState(FILE*, const State*)’:
stateLibrary.cc:199:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  199 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘Molecule copyStateToMolecule(const State*, Molecule*)’:
stateLibrary.cc:251:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  251 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-readfield.o `test -f 'readfield.cc' || echo './'`readfield.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-readmap.o `test -f 'readmap.cc' || echo './'`readmap.cc
readfield.cc: In function ‘void readfield(GridMapSetInfo*, char*, const clock_t&, const tms&, int, FILE*)’:
readfield.cc:49:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   49 |     register int i = 0;
      |                  ^
readfield.cc:83:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   83 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:108:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  108 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:116:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  116 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:123:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  123 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-readPDBQT.o `test -f 'readPDBQT.cc' || echo './'`readPDBQT.cc
readmap.cc: In function ‘Statistics readmap(char*, int, const clock_t&, const tms&, Boole, Boole*, int, const GridMapSetInfo*, MapType*, char, FILE*)’:
readmap.cc:82:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   82 |     register int xyz = 0;
      |                  ^~~
readmap.cc:83:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   83 |     register int i = 0;
      |                  ^
readmap.cc:84:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   84 |     register int j = 0;
      |                  ^
readmap.cc:85:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   85 |     register int k = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-read_parameter_library.o `test -f 'read_parameter_library.cc' || echo './'`read_parameter_library.cc
readPDBQT.cc: In function ‘Molecule readPDBQT(char*, int, int*, Real (*)[3], Real*, Boole*, int*, int*, char (*)[5], char*, char*, Boole, char (*)[128], int*, int*, Boole*, int*, int*, Real*, Real*, int*, int*, int (*)[2048], Real (*)[3], int*, int*, NonbondParam*, const clock_t&, const tms&, const char*, int*, int*, int, char (*)[256], int*, int, int, FILE*)’:
readPDBQT.cc:138:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  138 |         register int    i = 0;
      |                         ^
readPDBQT.cc:139:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  139 |         register int    j = 0;
      |                         ^
readPDBQT.cc:133:25: warning: variable ‘B_has_conect_records’ set but not used [-Wunused-but-set-variable=]
  133 |         Boole           B_has_conect_records = FALSE;
      |                         ^~~~~~~~~~~~~~~~~~~~
readPDBQT.cc:370:308: warning: ‘ could not be found;
	check ...’ directive writing 238 bytes into a region of size between 195 and 212 [-Wformat-overflow=]
  370 |                     prStr(message, "%s: WARNING: the atom type (%s) of atom number %d could not be found;\n\tcheck that this atom type is listed after the \"ligand_types\" keyword in the DPF,\n\tand make sure to add a \"map\" keyword to the DPF for this atom type.\n\tNote that AutoDock will use the default atom type = 1, instead.\n\n", programname, this_parameter_entry.autogrid_type, natom+1);
      |                                                                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from readPDBQT.cc:33:
In function ‘sprintf’,
    inlined from ‘readPDBQT(char*, int, int*, double (*) [3], double*, int*, int*, int*, char (*) [5], char*, char*, int, char (*) [128], int*, int*, int*, int*, int*, double*, double*, int*, int*, int (*) [2048], double (*) [3], int*, int*, nonbond_param*, long const&, tms const&, char const*, int*, int*, int, char (*) [256], int*, int, int, _IO_FILE*)’ at readPDBQT.cc:370:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 283 or more bytes (assuming 300) into a destination of size 256
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
read_parameter_library.cc: In function ‘void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)’:
read_parameter_library.cc:207:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  207 |     register int counter = 0;
      |                  ^~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-eval.o `test -f 'eval.cc' || echo './'`eval.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-gencau.o `test -f 'gencau.cc' || echo './'`gencau.cc
In file included from eval.h:38,
                 from eval.cc:39:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
eval.cc: In function ‘void make_state_from_rep(const Representation* const*, State*, int, FILE*)’:
eval.cc:72:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   72 |    register int i;
      |                 ^
eval.cc: In member function ‘double Eval::eval(int)’:
eval.cc:135:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  135 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-getrms.o `test -f 'getrms.cc' || echo './'`getrms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-get_atom_type.o `test -f 'get_atom_type.cc' || echo './'`get_atom_type.cc
getrms.cc: In function ‘Real getrms(const Real (*)[3], const Real (*)[3], Boole, Boole, int, const int*, Boole, int)’:
getrms.cc:48:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                  ^
getrms.cc:48:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                     ^
getrms.cc:48:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                        ^~~
get_atom_type.cc: In function ‘int get_atom_type(const char*)’:
get_atom_type.cc:53:9: warning: variable ‘bond_index’ set but not used [-Wunused-but-set-variable=]
   53 |     int bond_index = -1;
      |         ^~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-getInitialState.o `test -f 'getInitialState.cc' || echo './'`getInitialState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-getpdbcrds.o `test -f 'getpdbcrds.cc' || echo './'`getpdbcrds.cc
In file included from getInitialState.h:31,
                 from getInitialState.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
getInitialState.cc: In function ‘void getInitialState(Real*, const Real&, State*, State*, State*, Boole, Boole, Boole, const Real*, const Real*, const Real*, Real (*)[3], const Real (*)[3], const char (*)[128], EnergyComponent*, const EnergyTables*, Boole, MapType*, int, int, int*, GroupEnergy*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], int, int, const Real&, int, const int*, Boole, const Real&, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Unbound_Model, int, FILE*)’:
getInitialState.cc:111:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  111 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-gs.o `test -f 'gs.cc' || echo './'`gs.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-initautodock.o `test -f 'initautodock.cc' || echo './'`initautodock.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from gs.cc:42:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
gs.cc: In function ‘double worst_in_window(const double*, int, int, FILE*)’:
gs.cc:73:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   73 |    register int i;
      |                 ^
gs.cc: In function ‘double avg_in_window(const double*, int, FILE*)’:
gs.cc:107:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  107 |    register int i;
      |                 ^
gs.cc: In member function ‘double Genetic_Algorithm::worst_this_generation(const Population&, int, FILE*)’:
gs.cc:130:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  130 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::make_table(int, const Real&, int, FILE*)’:
gs.cc:287:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  287 |    register int i, j;
      |                 ^
gs.cc:287:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  287 |    register int i, j;
      |                    ^
gs.cc: In member function ‘void Genetic_Algorithm::initialize(unsigned int, unsigned int, int, FILE*)’:
gs.cc:396:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  396 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::crossover(Population&, int, FILE*)’:
gs.cc:596:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  596 |    register unsigned int i;
      |                          ^
In file included from constants.h:28,
                 from structs.h:30,
                 from rep.h:45,
                 from support.h:236:
autocomm.h:166:60: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); }
      |                                                            ^~~~~~~~~
gs.cc:641:10: note: in expansion of macro ‘assertQuatOK’
  641 |          assertQuatOK( q_father );
      |          ^~~~~~~~~~~~
autocomm.h:166:60: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); }
      |                                                            ^~~~~~~~~
gs.cc:652:10: note: in expansion of macro ‘assertQuatOK’
  652 |          assertQuatOK( q_mother );
      |          ^~~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::crossover_arithmetic(Genotype&, Genotype&, const Real&, int, FILE*)’:
gs.cc:877:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  877 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::selection_proportional(Population&, Individual*, int, FILE*)’:
gs.cc:983:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  983 |    register unsigned int i=0, start_index = 0;
      |                          ^
gs.cc:983:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  983 |    register unsigned int i=0, start_index = 0;
      |                               ^~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::selection_tournament(Population&, Individual*, int, FILE*)’:
gs.cc:1262:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1262 |    register unsigned int i = 0, start_index = 0;
      |                          ^
gs.cc:1262:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1262 |    register unsigned int i = 0, start_index = 0;
      |                                 ^~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::selection_linear_ranking(Population&, Individual*, int, FILE*)’:
gs.cc:1327:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1327 |    register unsigned int i = 0, start_index = 0;
      |                          ^
gs.cc:1327:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1327 |    register unsigned int i = 0, start_index = 0;
      |                                 ^~~~~~~~~~~
gs.cc: In member function ‘virtual int Genetic_Algorithm::search(Population&, Eval*, int, FILE*)’:
gs.cc:1420:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1420 |    register unsigned int i;
      |                          ^
In file included from initautodock.h:31,
                 from initautodock.cc:36:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
initautodock.cc: In function ‘void initautodock(const char (*)[128], Real (*)[3], const Real (*)[3], int, int, State*, const int (*)[2048], const Real (*)[3], int, int, const GridMapSetInfo*)’:
initautodock.cc:76:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   76 |     register int   xyz = 0;
      |                    ^~~
initautodock.cc:77:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   77 |     register int   i = 0;
      |                    ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-input_state.o `test -f 'input_state.cc' || echo './'`input_state.cc
In file included from input_state.h:30,
                 from input_state.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
input_state.cc: In function ‘int input_state(State*, FILE*, const char*, int, int*, Real*, Real*, char*)’:
input_state.cc:70:25: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   70 |             (void) fgets(myline, LINELEN, fp);
      |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-investigate.o `test -f 'investigate.cc' || echo './'`investigate.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-linpack.o `test -f 'linpack.cc' || echo './'`linpack.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from investigate.h:33,
                 from investigate.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
investigate.cc: In function ‘void investigate(int, int*, GroupEnergy*, const Real*, const Real*, const Real*, Boole, Real (*)[3], const Real (*)[3], const EnergyTables*, int, MapType*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], Boole, const short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, Real (*)[8][2], int*, Boole, Boole, const char*, int, int, const Real&, const Real&, const int*, Boole, const Real&, const Real&, const Real&, GridMapSetInfo*, Boole, Boole, Boole, int, int, int, FILE*)’:
investigate.cc:103:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  103 |     register int Test = -1;
      |                  ^~~~
investigate.cc:106:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  106 |     register int i = 0;
      |                  ^
investigate.cc:120:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  120 |     register int NumOutside = 0;
      |                  ^~~~~~~~~~
investigate.cc:121:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  121 |     register int LocalTest = 0;
      |                  ^~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-ls.o `test -f 'ls.cc' || echo './'`ls.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-mapping.o `test -f 'mapping.cc' || echo './'`mapping.cc
In file included from eval.h:38,
                 from support.h:237,
                 from ls.h:40,
                 from ls.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
ls.cc: In function ‘Phenotype genPh(const Phenotype&, const Real&, const Real*, Real*, int, FILE*)’:
ls.cc:46:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |    register unsigned int i, index = 0;
      |                          ^
ls.cc:46:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |    register unsigned int i, index = 0;
      |                             ^~~~~
ls.cc: In member function ‘virtual Boole Solis_Wets::SW(Phenotype&, int, FILE*)’:
ls.cc:88:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                          ^
ls.cc:88:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                             ^
ls.cc:88:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                                ^~~~~~~~~~~~~
ls.cc:88:51: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                                                   ^~~~~~~~~~~~
ls.cc:89:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |    register Real temp_rho = rho;
      |                  ^~~~~~~~
ls.cc:92:9: warning: unused variable ‘thisQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |         ^~~~~~~~
ls.cc:92:19: warning: unused variable ‘prevQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |                   ^~~~~~~~
ls.cc:92:29: warning: unused variable ‘startQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |                             ^~~~~~~~~
ls.cc: In member function ‘virtual Boole Pseudo_Solis_Wets::SW(Phenotype&, int, FILE*)’:
ls.cc:248:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                          ^
ls.cc:248:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                             ^
ls.cc:248:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                ^~~~~~~~~~~~~
ls.cc:248:51: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                                   ^~~~~~~~~~~~
ls.cc:248:70: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from eval.h:38,
                 from support.h:237,
                 from mapping.cc:37:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-mingw_getrusage.o `test -f 'mingw_getrusage.cc' || echo './'`mingw_getrusage.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-minmeanmax.o `test -f 'minmeanmax.cc' || echo './'`minmeanmax.cc
In file included from eval.h:38,
                 from support.h:237,
                 from minmeanmax.cc:39:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
minmeanmax.cc: In function ‘void minmeanmax(FILE*, const Population&, int, const GridMapSetInfo*)’:
minmeanmax.cc:51:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                 ^
minmeanmax.cc:51:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                      ^
minmeanmax.cc:51:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                           ^
minmeanmax.cc:56:76: warning: variable ‘best’ set but not used [-Wunused-but-set-variable=]
   56 |    double minimum[ 7+MAX_TORS ], sum[ 7+MAX_TORS ], maximum[ 7+MAX_TORS ], best[ 7+MAX_TORS ];
      |                                                                            ^~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-mkNewState.o `test -f 'mkNewState.cc' || echo './'`mkNewState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-mkTorTree.o `test -f 'mkTorTree.cc' || echo './'`mkTorTree.cc
In file included from mkNewState.h:31,
                 from mkNewState.cc:33:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
mkNewState.cc: In function ‘void mkNewState(State*, const State*, State*, const Real (*)[3], const int (*)[2048], int, Real (*)[3], const Real (*)[3], int, const Real&, const Real&, const Real&, const Real (*)[8][2], const int*, int, int, FILE*)’:
mkNewState.cc:56:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   56 |     register int i;
      |                  ^
mkTorTree.cc: In function ‘void mkTorTree(const int*, const int (*)[2048], const char (*)[256], int, int (*)[2048], int*, int*, const char*, const char (*)[5], Boole*, int*, int*, Real*, Real*, int*, int*, int, int, FILE*)’:
mkTorTree.cc:88:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |     register int   i = 0;
      |                    ^
mkTorTree.cc:89:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |     register int   j = 0;
      |                    ^
mkTorTree.cc:90:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int   k = 0;
      |                    ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-mkRandomState.o `test -f 'mkRandomState.cc' || echo './'`mkRandomState.cc
mkTorTree.cc: At global scope:
mkTorTree.cc:456:5: warning: ‘int check_atomnumber(int, const int*, int, int, FILE*)’ defined but not used [-Wunused-function]
  456 | int check_atomnumber( const int number, const int *atomnumber, const int nrecord,
      |     ^~~~~~~~~~~~~~~~
mkRandomState.cc: In function ‘State mkRandomState(int, Real (*)[8][2], int*, GridMapSetInfo*)’:
mkRandomState.cc:44:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   44 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-nonbonds.o `test -f 'nonbonds.cc' || echo './'`nonbonds.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-openfile.o `test -f 'openfile.cc' || echo './'`openfile.cc
In file included from nonbonds.cc:35:
mdist.h: In function ‘void mdist()’:
mdist.h:45:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   45 |         register int i,j;
      |                      ^
mdist.h:45:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   45 |         register int i,j;
      |                        ^
mdist.h:32:25: warning: operation on ‘mindist[0][0]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:89:5: note: in expansion of macro ‘set_minmax’
   89 |     set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[0][0]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:89:5: note: in expansion of macro ‘set_minmax’
   89 |     set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[1][1]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:96:5: note: in expansion of macro ‘set_minmax’
   96 |     set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[1][1]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:96:5: note: in expansion of macro ‘set_minmax’
   96 |     set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[2][2]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:102:5: note: in expansion of macro ‘set_minmax’
  102 |     set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[2][2]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:102:5: note: in expansion of macro ‘set_minmax’
  102 |     set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[3][3]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:107:5: note: in expansion of macro ‘set_minmax’
  107 |     set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming.
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[3][3]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:107:5: note: in expansion of macro ‘set_minmax’
  107 |     set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming.
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[4][4]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:111:5: note: in expansion of macro ‘set_minmax’
  111 |     set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[4][4]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:111:5: note: in expansion of macro ‘set_minmax’
  111 |     set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[5][5]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:114:5: note: in expansion of macro ‘set_minmax’
  114 |     set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[5][5]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:114:5: note: in expansion of macro ‘set_minmax’
  114 |     set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[6][6]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:116:5: note: in expansion of macro ‘set_minmax’
  116 |     set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[6][6]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:116:5: note: in expansion of macro ‘set_minmax’
  116 |     set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515
      |     ^~~~~~~~~~
nonbonds.cc: In function ‘void printbonds(int, const int*, const int (*)[16], const char*, int, int, FILE*)’:
nonbonds.cc:250:13: warning: ‘?:’ using integer constants in boolean context [-Wint-in-bool-context]
  248 |         for (int j=0; j<
      |                       ~~
  249 |             B_print_all_bonds
      |             ~~~~~~~~~~~~~~~~~
  250 |             ? MAX_NBONDS // loop over all the slots for this atom's "j" bonds
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  251 |             : nbonds[i]; // loop over this atom's "j" bonds
      |             ~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-output_state.o `test -f 'output_state.cc' || echo './'`output_state.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-parse_dpf_line.o `test -f 'parse_dpf_line.cc' || echo './'`parse_dpf_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-parse_param_line.o `test -f 'parse_param_line.cc' || echo './'`parse_param_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-parse_PDBQT_line.o `test -f 'parse_PDBQT_line.cc' || echo './'`parse_PDBQT_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-parse_trj_line.o `test -f 'parse_trj_line.cc' || echo './'`parse_trj_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-parsetypes.o `test -f 'parsetypes.cc' || echo './'`parsetypes.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-print_2x.o `test -f 'print_2x.cc' || echo './'`print_2x.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-print_atomic_energies.o `test -f 'print_atomic_energies.cc' || echo './'`print_atomic_energies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-print_avsfld.o `test -f 'print_avsfld.cc' || echo './'`print_avsfld.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-writePDBQT.o `test -f 'writePDBQT.cc' || echo './'`writePDBQT.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-print_rem.o `test -f 'print_rem.cc' || echo './'`print_rem.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-printdate.o `test -f 'printdate.cc' || echo './'`printdate.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from writePDBQT.h:34,
                 from writePDBQT.cc:35:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-printEnergies.o `test -f 'printEnergies.cc' || echo './'`printEnergies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-printhms.o `test -f 'printhms.cc' || echo './'`printhms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-prClusterHist.o `test -f 'prClusterHist.cc' || echo './'`prClusterHist.cc
prClusterHist.cc: In function ‘void prClusterHist(int, int, const Real&, const int*, const int (*)[2000], const Real*, const Real (*)[2000], const Real*, int, FILE*)’:
prClusterHist.cc:51:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |     register int  Rank=0,
      |                   ^~~~
prClusterHist.cc:52:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   52 |                   j=0;
      |                   ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-prInitialState.o `test -f 'prInitialState.cc' || echo './'`prInitialState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-prTorConList.o `test -f 'prTorConList.cc' || echo './'`prTorConList.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from writePDBQT.h:34,
                 from prInitialState.cc:36:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
prInitialState.cc: In function ‘void prInitialState(const EnergyBreakdown*, int, int, const Real (*)[3], const char (*)[128], const int*, EnergyComponent*, const Real*, int, Boole, Unbound_Model, int, FILE*)’:
prInitialState.cc:59:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   59 |     register int i = 0;
      |                  ^
prTorConList.cc: In function ‘void prTorConList(int, const Boole*, const short unsigned int (*)[256], Real (*)[8][2], int*, int, FILE*)’:
prTorConList.cc:64:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-pso.o `test -f 'pso.cc' || echo './'`pso.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-qmultiply.o `test -f 'qmultiply.cc' || echo './'`qmultiply.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from pso.h:4,
                 from pso.cc:1:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
In file included from qmultiply.cc:35:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qmultiply.cc:42:44: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   42 |                 register const Quat *const ql,   //left
      |                                            ^~
qmultiply.cc:43:44: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   43 |                 register const Quat *const qr )  //right
      |                                            ^~
qmultiply.cc: In function ‘void qmultiply(Quat*, const Quat*, const Quat*)’:
qmultiply.cc:66:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                     ^
qmultiply.cc:66:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                       ^
qmultiply.cc:66:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                         ^
qmultiply.cc:66:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                           ^
qmultiply.cc: In function ‘AxisAngle QuatToAxisAngle(const Quat&)’:
qmultiply.cc:224:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  224 |         register double angle = 2. * acos( input.w );
      |                         ^~~~~
qmultiply.cc: In function ‘Quat inverse(const Quat&)’:
qmultiply.cc:356:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  356 |     register Quat conj, inv;
      |                   ^~~~
qmultiply.cc:356:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  356 |     register Quat conj, inv;
      |                         ^~~
qmultiply.cc:357:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  357 |     register double inv_squared_magnitude;
      |                     ^~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-qtransform.o `test -f 'qtransform.cc' || echo './'`qtransform.cc
In file included from qtransform.h:35,
                 from qtransform.cc:32:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qtransform.cc: In function ‘void qtransform(const Coord&, const Quat&, Real (*)[3], int)’:
qtransform.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int a;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-quicksort.o `test -f 'quicksort.cc' || echo './'`quicksort.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-ranlib.o `test -f 'ranlib.cc' || echo './'`ranlib.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-rep.o `test -f 'rep.cc' || echo './'`rep.cc
rep.cc: In constructor ‘IntVector::IntVector(int)’:
rep.cc:77:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   77 |    register int i;
      |                 ^
rep.cc: In constructor ‘IntVector::IntVector(int, int, int)’:
rep.cc:95:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   95 |    register int i;
      |                 ^
rep.cc: In copy constructor ‘IntVector::IntVector(const IntVector&)’:
rep.cc:129:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  129 |    for (register unsigned int i=0; i<number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& IntVector::operator=(const Representation&)’:
rep.cc:237:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  237 |    register unsigned int i;
      |                          ^
rep.cc: In constructor ‘RealVector::RealVector(int, const double&, const double&, const double&)’:
rep.cc:329:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  329 |    register int i=0;
      |                 ^
rep.cc: In copy constructor ‘RealVector::RealVector(const RealVector&)’:
rep.cc:428:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 |    for (register unsigned int i=0; i<original.number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& RealVector::operator=(const Representation&)’:
rep.cc:553:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  553 |    register unsigned int i;
      |                          ^
rep.cc: In copy constructor ‘ConstrainedRealVector::ConstrainedRealVector(const ConstrainedRealVector&)’:
rep.cc:641:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  641 |    for (register unsigned int i=0; i<original.number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘void ConstrainedRealVector::normalize()’:
rep.cc:753:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  753 |       register unsigned int i;
      |                             ^
rep.cc:754:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  754 |       register double tempsum = 0.0, hypotenuse;
      |                       ^~~~~~~
rep.cc:754:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  754 |       register double tempsum = 0.0, hypotenuse;
      |                                      ^~~~~~~~~~
rep.cc: In member function ‘virtual Representation& ConstrainedRealVector::operator=(const Representation&)’:
rep.cc:812:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  812 |    register unsigned int i;
      |                          ^
rep.cc: In copy constructor ‘BitVector::BitVector(const BitVector&)’:
rep.cc:900:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  900 |    for (register unsigned int i=0; i<number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& BitVector::operator=(const Representation&)’:
rep.cc:994:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  994 |    register unsigned int i;
      |                          ^
ranlib.cc: In function ‘ignpoi(double const&)’:
ranlib.cc:1144:21: warning: ‘m’ may be used uninitialized [-Wmaybe-uninitialized]
 1144 |     if(u > 0.458) j = IMIN(l,m);
      |                   ~~^~~~~~~~~~~
ranlib.cc:995:33: note: ‘m’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |                                 ^
ranlib.cc:1136:5: warning: ‘p’ may be used uninitialized [-Wmaybe-uninitialized]
 1136 |     if(u <= p0) return ignpoi;
      |     ^~
ranlib.cc:996:58: note: ‘p’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                          ^
ranlib.cc:1023:5: warning: ‘l’ may be used uninitialized [-Wmaybe-uninitialized]
 1023 |     if(ignpoi >= l) return ignpoi;
      |     ^~
ranlib.cc:995:31: note: ‘l’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |                               ^
ranlib.cc:1030:9: warning: ‘d’ may be used uninitialized [-Wmaybe-uninitialized]
 1030 |     if(d*u >= difmuk*difmuk*difmuk) return ignpoi;
      |        ~^~
ranlib.cc:996:26: note: ‘d’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                          ^
ranlib.cc:1017:7: warning: ‘s’ may be used uninitialized [-Wmaybe-uninitialized]
 1017 |     g = mu+s*snorm();
      |     ~~^~~~~~~~~~~~~~
ranlib.cc:996:71: note: ‘s’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                                       ^
ranlib.cc:1092:5: warning: ‘ignpoi’ may be used uninitialized [-Wmaybe-uninitialized]
 1092 |     if(ignpoi >= 10) goto S80;
      |     ^~
ranlib.cc:995:14: note: ‘ignpoi’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |              ^~~~~~
ranlib.cc:1104:7: warning: ‘difmuk’ may be used uninitialized [-Wmaybe-uninitialized]
 1104 |     v = difmuk/fk;
      |     ~~^~~~~~~~~~~
ranlib.cc:996:32: note: ‘difmuk’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                ^~~~~~
ranlib.cc:1102:9: warning: ‘fk’ may be used uninitialized [-Wmaybe-uninitialized]
 1102 |     del = 8.333333E-2/fk;
      |     ~~~~^~~~~~~~~~~~~~~~
ranlib.cc:996:41: note: ‘fk’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                         ^~
ranlib.cc:1116:38: warning: ‘c0’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                ~~~~~~~~~~~~~~~~~~~~~~^~~~
ranlib.cc:996:14: note: ‘c0’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |              ^~
ranlib.cc:1116:31: warning: ‘c1’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                 ~~~~~~~~~~~~~~^~~~
ranlib.cc:996:17: note: ‘c1’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                 ^~
ranlib.cc:1116:24: warning: ‘c2’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                  ~~~~~~^~~~
ranlib.cc:996:20: note: ‘c2’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                    ^~
ranlib.cc:1116:24: warning: ‘c3’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                  ~~~~~~^~~~
ranlib.cc:996:23: note: ‘c3’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                       ^~
ranlib.cc:1116:8: warning: ‘omega’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |     ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ranlib.cc:996:52: note: ‘omega’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                    ^~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-scauchy.o `test -f 'scauchy.cc' || echo './'`scauchy.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-setflags.o `test -f 'setflags.cc' || echo './'`setflags.cc
scauchy.cc: In function ‘Real scauchy2()’:
scauchy.cc:81:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |               ^
scauchy.cc:81:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                  ^
scauchy.cc:81:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                     ^~
scauchy.cc:81:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                         ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-simanneal.o `test -f 'simanneal.cc' || echo './'`simanneal.cc
setflags.cc: In function ‘setflags(int, char const**, char const*)’:
setflags.cc:293:20: warning: ‘__strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  293 |             strncpy(logFileName, dock_param_fn, strlen(dock_param_fn)-4);
      |                    ^
setflags.cc:293:55: note: length computed here
  293 |             strncpy(logFileName, dock_param_fn, strlen(dock_param_fn)-4);
      |                                                 ~~~~~~^~~~~~~~~~~~~~~
In file included from getInitialState.h:31,
                 from simanneal.h:33,
                 from simanneal.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
simanneal.cc: In function ‘void simanneal(int*, int, int*, GroupEnergy*, int, const Real&, const char (*)[128], Real*, Real*, Real*, Boole, Real (*)[3], Real (*)[3], const char*, EnergyTables*, Real*, Boole, EnergyComponent*, int, int, FourByteLong (*)[2], const clock_t&, MapType*, int, int, NonbondParam*, int, int, State, State*, const Real&, Boole, const Real&, Boole, const char*, const Real*, const Real&, Boole, const Real&, const tms&, const int (*)[2048], const Real&, Boole, const Real&, const char*, int, int, int, const Real&, Boole, const Real&, const int*, Real (*)[3], Boole, Boole, int, int, const Real&, const Real&, Boole, const Real&, Boole, const char*, Boole, short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, const Real (*)[8][2], const int*, Boole, Boole, Boole, const Real&, const Real&, int, int, const int*, Boole, const Real&, const Real&, const ParameterEntry*, const Real&, GridMapSetInfo*, Boole, Boole, const char (*)[256], Unbound_Model, int, FILE*)’:
simanneal.cc:188:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  188 |     register int i = 0;
      |                  ^
simanneal.cc:189:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  189 |     register int nacc = 0;
      |                  ^~~~
simanneal.cc:190:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  190 |     register int nAcc = 0;
      |                  ^~~~
simanneal.cc:191:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  191 |     register int nAccProb = 0;
      |                  ^~~~~~~~
simanneal.cc:192:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  192 |     register int nedge = 0;
      |                  ^~~~~
simanneal.cc:193:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  193 |     register int nrej = 0;
      |                  ^~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-sort_enrg.o `test -f 'sort_enrg.cc' || echo './'`sort_enrg.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-stack.o `test -f 'stack.cc' || echo './'`stack.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-stop.o `test -f 'stop.cc' || echo './'`stop.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-strindex.o `test -f 'strindex.cc' || echo './'`strindex.cc
strindex.cc: In function ‘int strindex(const char*, const char*)’:
strindex.cc:54:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                  ^
strindex.cc:54:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                    ^~
strindex.cc:54:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                       ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-success.o `test -f 'success.cc' || echo './'`success.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-support.o `test -f 'support.cc' || echo './'`support.cc
In file included from eval.h:38,
                 from support.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
support.cc: In copy constructor ‘Population::Population(const Population&)’:
support.cc:52:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   52 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::msort(int)’:
support.cc:147:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  147 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::print(FILE*, int) const’:
support.cc:187:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  187 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::printPopulationAsStates(FILE*, int, int) const’:
support.cc:348:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  348 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::printPopulationAsCoordsEnergies(FILE*, int, int) const’:
support.cc:388:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  388 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::set_eob(int*)’:
support.cc:433:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  433 |    for (register int i=0; i<MAX_TORS; i++) {
      |                      ^
support.cc: In constructor ‘Genotype::Genotype(unsigned int, Representation**)’:
support.cc:456:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                          ^
support.cc:456:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                             ^
support.cc:456:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                                ^
support.cc: In copy constructor ‘Genotype::Genotype(const Genotype&)’:
support.cc:484:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  484 |    register unsigned int i;
      |                          ^
support.cc: In destructor ‘Genotype::~Genotype()’:
support.cc:512:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  512 |    register unsigned int i;
      |                          ^
support.cc: In constructor ‘Phenotype::Phenotype(unsigned int, Representation**, Eval*)’:
support.cc:674:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                          ^
support.cc:674:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                             ^
support.cc:674:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                                ^
support.cc: In copy constructor ‘Phenotype::Phenotype(const Phenotype&)’:
support.cc:700:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  700 |    register unsigned int i;
      |                          ^
support.cc: In member function ‘Phenotype& Phenotype::operator=(const Phenotype&)’:
support.cc:731:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  731 |    register unsigned int i;
      |                          ^
support.cc: In destructor ‘Phenotype::~Phenotype()’:
support.cc:781:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  781 |    register unsigned int i;
      |                          ^
support.cc: In member function ‘Population& Population::operator=(const Population&)’:
support.cc:968:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  968 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-swap.o `test -f 'swap.cc' || echo './'`swap.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-threadlog.o `test -f 'threadlog.cc' || echo './'`threadlog.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-timesys.o `test -f 'timesys.cc' || echo './'`timesys.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-timesyshms.o `test -f 'timesyshms.cc' || echo './'`timesyshms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-torNorVec.o `test -f 'torNorVec.cc' || echo './'`torNorVec.cc
torNorVec.cc: In function ‘void torNorVec(const Real (*)[3], int, const int (*)[2048], Real (*)[3], int, FILE*)’:
torNorVec.cc:47:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   47 |     register int xyz = 0;
      |                  ^~~
torNorVec.cc:48:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int j = 0;
      |                  ^
torNorVec.cc: In function ‘void update_torsion_vectors(const Real (*)[3], int, const int (*)[2048], Real (*)[3], Molecule*, int, int, FILE*)’:
torNorVec.cc:104:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  104 |     register int i=0, j=0;
      |                  ^
torNorVec.cc:104:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  104 |     register int i=0, j=0;
      |                       ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-torsion.o `test -f 'torsion.cc' || echo './'`torsion.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-trilinterp.o `test -f 'trilinterp.cc' || echo './'`trilinterp.cc
torsion.cc: In function ‘void torsion(const State&, Real (*)[3], const Real (*)[3], const int (*)[2048], int)’:
torsion.cc:62:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |     register double crdtemp[SPACE];
      |                     ^~~~~~~
torsion.cc:63:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   63 |     register double  d[SPACE];
      |                      ^
torsion.cc:64:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register double sv[SPACE];
      |                     ^~
torsion.cc:65:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register double ov[SPACE];
      |                     ^~
torsion.cc:66:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double  k[SPACE][SPACE];
      |                      ^
torsion.cc:67:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                     ^
torsion.cc:67:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                        ^
torsion.cc:67:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                           ^
torsion.cc:67:30: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                              ^~~
torsion.cc:67:35: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                                   ^~~~~~~~
torsion.cc:68:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                  ^
torsion.cc:68:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                     ^
torsion.cc:68:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                        ^~~~~
torsion.cc:68:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                               ^~~~~~
torsion.cc:68:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                                       ^~~~~~~~~~~
trilinterp.cc: In function ‘Real trilinterp(int, int, const Real (*)[3], const Real*, const Real*, const int*, MapType*, const GridMapSetInfo*, const int*, EnergyComponent*, EnergyComponent*, EnergyComponent*)’:
trilinterp.cc:88:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |     register int i;               /* i-th atom */
      |                  ^
trilinterp.cc:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                         ^
trilinterp.cc:92:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                            ^
trilinterp.cc:92:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                               ^
trilinterp.cc:93:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                         ^
trilinterp.cc:93:30: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                              ^
trilinterp.cc:93:35: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                                   ^
trilinterp.cc:96:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   96 |         register int AtomType;        /* atom type */
      |                      ^~~~~~~~
trilinterp.cc:97:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                      ^~
trilinterp.cc:97:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                           ^~
trilinterp.cc:97:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                                ^~
trilinterp.cc:98:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                      ^~
trilinterp.cc:98:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                           ^~
trilinterp.cc:98:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                                ^~
trilinterp.cc:99:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                         ^
trilinterp.cc:99:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                           ^
trilinterp.cc:99:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                             ^
trilinterp.cc:98:22: warning: variable ‘u1’ set but not used [-Wunused-but-set-variable=]
   98 |         register int u1,  v1,  w1;
      |                      ^~
trilinterp.cc:98:27: warning: variable ‘v1’ set but not used [-Wunused-but-set-variable=]
   98 |         register int u1,  v1,  w1;
      |                           ^~
trilinterp.cc:98:32: warning: variable ‘w1’ set but not used [-Wunused-but-set-variable=]
   98 |         register int u1,  v1,  w1;
      |                                ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-usage.o `test -f 'usage.cc' || echo './'`usage.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-weedbonds.o `test -f 'weedbonds.cc' || echo './'`weedbonds.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-warn_bad_file.o `test -f 'warn_bad_file.cc' || echo './'`warn_bad_file.cc
weedbonds.cc: In function ‘void weedbonds(int, const char (*)[5], const int*, int, const int (*)[2048], int (*)[2048], int*, NonbondParam*, int*, int, const int*, int, int, FILE*)’:
weedbonds.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int i = 0;
      |                  ^
weedbonds.cc:66:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register int j = 0;
      |                  ^
weedbonds.cc:67:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register int k = 0;
      |                  ^
weedbonds.cc: In function ‘void print_nonbonds(int, const char (*)[5], const int*, int, const int (*)[2048], int (*)[2048], int, const NonbondParam*, const int*, int, FILE*)’:
weedbonds.cc:252:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  252 |     register int i = 0;
      |                  ^
weedbonds.cc:253:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  253 |     register int j = 0;
      |                  ^
weedbonds.cc:254:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  254 |     register int k = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-coliny.o `test -f 'coliny.cc' || echo './'`coliny.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-eintcal.o `test -f 'eintcal.cc' || echo './'`eintcal.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-eintcalPrint.o `test -f 'eintcalPrint.cc' || echo './'`eintcalPrint.cc
eintcal.cc: In function ‘Real eintcal(const NonbondParam*, const EnergyTables*, const Real (*)[3], int, int*, GroupEnergy*, Boole, Boole, const Real&, const Real*, Boole, Boole, int, FILE*)’:
eintcal.cc:206:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  206 |             register double r2;
      |                             ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-intnbtable.o `test -f 'intnbtable.cc' || echo './'`intnbtable.cc
In file included from eintcalPrint.cc:29:
./eintcal.cc: In function ‘Real eintcalPrint(const NonbondParam*, const EnergyTables*, const Real (*)[3], int, int*, GroupEnergy*, Boole, Boole, const Real&, const Real*, Boole, Boole, int, const int*, const char (*)[3], int, FILE*)’:
./eintcal.cc:206:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  206 |             register double r2;
      |                             ^~
./eintcal.cc:130:12: warning: variable ‘total_e_vdW_Hb’ set but not used [-Wunused-but-set-variable=]
  130 |     double total_e_vdW_Hb=0.0L;
      |            ^~~~~~~~~~~~~~
intnbtable.cc: In function ‘void intnbtable(Boole*, int, int, const GridMapSetInfo*, const Real&, const Real&, int, int, Boole, const Real&, Linear_FE_Model, const double&, EnergyTables*, Boole, FILE*, int)’:
intnbtable.cc:83:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   83 |     register int i;
      |                  ^
intnbtable.cc: In function ‘void setup_distdepdiel(FILE*, int, EnergyTables*)’:
intnbtable.cc:268:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  268 |     register int i=0;
      |                  ^
intnbtable.cc:269:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  269 |     register double distance=0.0L;
      |                     ^~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autodock4_omp-nbe.o `test -f 'nbe.cc' || echo './'`nbe.cc
g++ -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection     -Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o autodock4 autodock4-main.o autodock4-alea.o autodock4-analysis.o autodock4-atom_parameter_manager.o autodock4-banner.o autodock4-bestpdb.o autodock4-calculateEnergies.o autodock4-call_glss.o autodock4-call_ls.o autodock4-center_ligand.o autodock4-changeState.o autodock4-check_header_float.o autodock4-check_header_int.o autodock4-check_header_line.o autodock4-cluster_analysis.o autodock4-clmode.o autodock4-cnv_state_to_coords.o autodock4-com.o autodock4-conformation_sampler.o autodock4-dimLibrary.o autodock4-distdepdiel.o autodock4-stateLibrary.o autodock4-readfield.o autodock4-readmap.o autodock4-readPDBQT.o autodock4-read_parameter_library.o autodock4-eval.o autodock4-gencau.o autodock4-getrms.o autodock4-get_atom_type.o autodock4-getInitialState.o autodock4-getpdbcrds.o autodock4-gs.o autodock4-initautodock.o autodock4-input_state.o autodock4-investigate.o autodock4-linpack.o autodock4-ls.o autodock4-mapping.o autodock4-mingw_getrusage.o autodock4-minmeanmax.o autodock4-mkNewState.o autodock4-mkTorTree.o autodock4-mkRandomState.o autodock4-nonbonds.o autodock4-openfile.o autodock4-output_state.o autodock4-parse_dpf_line.o autodock4-parse_param_line.o autodock4-parse_PDBQT_line.o autodock4-parse_trj_line.o autodock4-parsetypes.o autodock4-print_2x.o autodock4-print_atomic_energies.o autodock4-print_avsfld.o autodock4-writePDBQT.o autodock4-print_rem.o autodock4-printdate.o autodock4-printEnergies.o autodock4-printhms.o autodock4-prClusterHist.o autodock4-prInitialState.o autodock4-prTorConList.o autodock4-pso.o autodock4-qmultiply.o autodock4-qtransform.o autodock4-quicksort.o autodock4-ranlib.o autodock4-rep.o autodock4-scauchy.o autodock4-setflags.o autodock4-simanneal.o autodock4-sort_enrg.o autodock4-stack.o autodock4-stop.o autodock4-strindex.o autodock4-success.o autodock4-support.o autodock4-swap.o autodock4-threadlog.o autodock4-timesys.o autodock4-timesyshms.o autodock4-torNorVec.o autodock4-torsion.o autodock4-trilinterp.o autodock4-usage.o autodock4-weedbonds.o autodock4-warn_bad_file.o autodock4-coliny.o autodock4-eintcal.o autodock4-eintcalPrint.o autodock4-intnbtable.o autodock4-nbe.o  -lm 
nbe.cc: In function ‘void nbe(const GridMapSetInfo*, const EnergyTables*, int, int, FILE*)’:
nbe.cc:64:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register int i = 0;
      |                  ^
nbe.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int j = 0;
      |                  ^
nbe.cc:66:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register int k = 0;
      |                  ^
g++ -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection    -fopenmp  -fopenmp -Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o autodock4.omp autodock4_omp-main.o autodock4_omp-alea.o autodock4_omp-analysis.o autodock4_omp-atom_parameter_manager.o autodock4_omp-banner.o autodock4_omp-bestpdb.o autodock4_omp-calculateEnergies.o autodock4_omp-call_glss.o autodock4_omp-call_ls.o autodock4_omp-center_ligand.o autodock4_omp-changeState.o autodock4_omp-check_header_float.o autodock4_omp-check_header_int.o autodock4_omp-check_header_line.o autodock4_omp-cluster_analysis.o autodock4_omp-clmode.o autodock4_omp-cnv_state_to_coords.o autodock4_omp-com.o autodock4_omp-conformation_sampler.o autodock4_omp-dimLibrary.o autodock4_omp-distdepdiel.o autodock4_omp-stateLibrary.o autodock4_omp-readfield.o autodock4_omp-readmap.o autodock4_omp-readPDBQT.o autodock4_omp-read_parameter_library.o autodock4_omp-eval.o autodock4_omp-gencau.o autodock4_omp-getrms.o autodock4_omp-get_atom_type.o autodock4_omp-getInitialState.o autodock4_omp-getpdbcrds.o autodock4_omp-gs.o autodock4_omp-initautodock.o autodock4_omp-input_state.o autodock4_omp-investigate.o autodock4_omp-linpack.o autodock4_omp-ls.o autodock4_omp-mapping.o autodock4_omp-mingw_getrusage.o autodock4_omp-minmeanmax.o autodock4_omp-mkNewState.o autodock4_omp-mkTorTree.o autodock4_omp-mkRandomState.o autodock4_omp-nonbonds.o autodock4_omp-openfile.o autodock4_omp-output_state.o autodock4_omp-parse_dpf_line.o autodock4_omp-parse_param_line.o autodock4_omp-parse_PDBQT_line.o autodock4_omp-parse_trj_line.o autodock4_omp-parsetypes.o autodock4_omp-print_2x.o autodock4_omp-print_atomic_energies.o autodock4_omp-print_avsfld.o autodock4_omp-writePDBQT.o autodock4_omp-print_rem.o autodock4_omp-printdate.o autodock4_omp-printEnergies.o autodock4_omp-printhms.o autodock4_omp-prClusterHist.o autodock4_omp-prInitialState.o autodock4_omp-prTorConList.o autodock4_omp-pso.o autodock4_omp-qmultiply.o autodock4_omp-qtransform.o autodock4_omp-quicksort.o autodock4_omp-ranlib.o autodock4_omp-rep.o autodock4_omp-scauchy.o autodock4_omp-setflags.o autodock4_omp-simanneal.o autodock4_omp-sort_enrg.o autodock4_omp-stack.o autodock4_omp-stop.o autodock4_omp-strindex.o autodock4_omp-success.o autodock4_omp-support.o autodock4_omp-swap.o autodock4_omp-threadlog.o autodock4_omp-timesys.o autodock4_omp-timesyshms.o autodock4_omp-torNorVec.o autodock4_omp-torsion.o autodock4_omp-trilinterp.o autodock4_omp-usage.o autodock4_omp-weedbonds.o autodock4_omp-warn_bad_file.o autodock4_omp-coliny.o autodock4_omp-eintcal.o autodock4_omp-eintcalPrint.o autodock4_omp-intnbtable.o autodock4_omp-nbe.o  -lm 
/usr/bin/ld: /tmp/cc8nlV9I.ltrans3.ltrans.o: in function `threadLogOpen(int)':
/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock/threadlog.cc:48:(.text+0x92cc): warning: the use of `tempnam' is dangerous, better use `mkstemp'
make[1]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
+ popd
~/build/BUILD/autodocksuite-4.2.6-build/src
~/build/BUILD/autodocksuite-4.2.6-build/src/autogrid ~/build/BUILD/autodocksuite-4.2.6-build/src
+ pushd /builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2014-07-19 01:59:01.000000000 +0000
+++ ./configure	2025-12-25 11:50:41.404820604 +0000
@@ -1868,7 +1868,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
+ ./configure --build=s390x-redhat-linux --host=s390x-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/bin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... none
checking build system type... s390x-redhat-linux-gnu
checking host system type... s390x-redhat-linux-gnu
checking for s390x-redhat-linux-gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... none
checking for sqrt in -lm... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... no
checking for _Bool... yes
checking for an ANSI C-conforming const... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for gethostname... yes
checking for getpid... yes
checking for GetProcessId... no
checking for fchmod... yes
checking for setlinebuf... yes
checking for sysconf... yes
checking for times... yes
checking for getrusage... yes
checking for pow... yes
checking for sqrt... yes
checking for strncasecmp... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
+ make V=1 -j2
rm -f default_parameters.h
csh ./../autodock/paramdat2h.csh ./../autodock/AD4_parameters.dat  ./../autodock/AD4.1_bound.dat > default_parameters.h
sh ./copyfilesfromAD
make  all-am
make[1]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-main.o `test -f 'main.cpp' || echo './'`main.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-check_size.o `test -f 'check_size.cpp' || echo './'`check_size.cpp
main.cpp: In function ‘int main(int, char**)’:
main.cpp:427:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |              ^
main.cpp:427:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                     ^~
main.cpp:427:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                             ^
main.cpp:427:36: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                                    ^
main.cpp:427:43: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                                           ^~~~~~
main.cpp:427:55: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                                                       ^~~~~~~~
main.cpp:428:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |              ^~
main.cpp:428:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                      ^~
main.cpp:428:30: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                              ^~
main.cpp:428:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                      ^~~~~~~~~
main.cpp:428:54: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                                      ^~~
main.cpp:428:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                                               ^~
main.cpp:428:71: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                                                       ^~
main.cpp:428:79: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                                                               ^~
main.cpp:429:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  429 | register int closestH = 0;
      |              ^~~~~~~~
main.cpp:214:5: warning: variable ‘parameter_library_found’ set but not used [-Wunused-but-set-variable=]
  214 | int parameter_library_found = 0;
      |     ^~~~~~~~~~~~~~~~~~~~~~~
main.cpp:263:8: warning: variable ‘maptypeptr’ set but not used [-Wunused-but-set-variable=]
  263 | char * maptypeptr; /*ptr for current map->type*/
      |        ^~~~~~~~~~
main.cpp:301:44: warning: variable ‘nitrogen’ set but not used [-Wunused-but-set-variable=]
  301 | int hydrogen, carbon, arom_carbon, oxygen, nitrogen;
      |                                            ^~~~~~~~
main.cpp:302:21: warning: variable ‘nonHB_nitrogen’ set but not used [-Wunused-but-set-variable=]
  302 | int nonHB_hydrogen, nonHB_nitrogen, sulphur, nonHB_sulphur;
      |                     ^~~~~~~~~~~~~~
main.cpp:302:46: warning: variable ‘nonHB_sulphur’ set but not used [-Wunused-but-set-variable=]
  302 | int nonHB_hydrogen, nonHB_nitrogen, sulphur, nonHB_sulphur;
      |                                              ^~~~~~~~~~~~~
main.cpp:305:5: warning: variable ‘chlorine’ set but not used [-Wunused-but-set-variable=]
  305 | int chlorine, bromine, fluorine, iodine;
      |     ^~~~~~~~
main.cpp:305:15: warning: variable ‘bromine’ set but not used [-Wunused-but-set-variable=]
  305 | int chlorine, bromine, fluorine, iodine;
      |               ^~~~~~~
main.cpp:305:24: warning: variable ‘fluorine’ set but not used [-Wunused-but-set-variable=]
  305 | int chlorine, bromine, fluorine, iodine;
      |                        ^~~~~~~~
main.cpp:305:34: warning: variable ‘iodine’ set but not used [-Wunused-but-set-variable=]
  305 | int chlorine, bromine, fluorine, iodine;
      |                                  ^~~~~~
main.cpp:307:5: warning: variable ‘map_hydrogen’ set but not used [-Wunused-but-set-variable=]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |     ^~~~~~~~~~~~
main.cpp:307:19: warning: variable ‘map_carbon’ set but not used [-Wunused-but-set-variable=]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |                   ^~~~~~~~~~
main.cpp:307:31: warning: variable ‘map_arom_carbon’ set but not used [-Wunused-but-set-variable=]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |                               ^~~~~~~~~~~~~~~
main.cpp:307:48: warning: variable ‘map_oxygen’ set but not used [-Wunused-but-set-variable=]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |                                                ^~~~~~~~~~
main.cpp:307:60: warning: variable ‘map_nitrogen’ set but not used [-Wunused-but-set-variable=]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |                                                            ^~~~~~~~~~~~
main.cpp:308:5: warning: variable ‘map_nonHB_hydrogen’ set but not used [-Wunused-but-set-variable=]
  308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur;
      |     ^~~~~~~~~~~~~~~~~~
main.cpp:308:25: warning: variable ‘map_nonHB_nitrogen’ set but not used [-Wunused-but-set-variable=]
  308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur;
      |                         ^~~~~~~~~~~~~~~~~~
main.cpp:308:45: warning: variable ‘map_sulphur’ set but not used [-Wunused-but-set-variable=]
  308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur;
      |                                             ^~~~~~~~~~~
main.cpp:308:58: warning: variable ‘map_nonHB_sulphur’ set but not used [-Wunused-but-set-variable=]
  308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur;
      |                                                          ^~~~~~~~~~~~~~~~~
main.cpp:309:5: warning: variable ‘map_chlorine’ set but not used [-Wunused-but-set-variable=]
  309 | int map_chlorine, map_bromine, map_fluorine, map_iodine;
      |     ^~~~~~~~~~~~
main.cpp:309:19: warning: variable ‘map_bromine’ set but not used [-Wunused-but-set-variable=]
  309 | int map_chlorine, map_bromine, map_fluorine, map_iodine;
      |                   ^~~~~~~~~~~
main.cpp:309:32: warning: variable ‘map_fluorine’ set but not used [-Wunused-but-set-variable=]
  309 | int map_chlorine, map_bromine, map_fluorine, map_iodine;
      |                                ^~~~~~~~~~~~
main.cpp:309:46: warning: variable ‘map_iodine’ set but not used [-Wunused-but-set-variable=]
  309 | int map_chlorine, map_bromine, map_fluorine, map_iodine;
      |                                              ^~~~~~~~~~
main.cpp:347:5: warning: variable ‘ctr’ set but not used [-Wunused-but-set-variable=]
  347 | int ctr;
      |     ^~~
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-setflags.o `test -f 'setflags.cpp' || echo './'`setflags.cpp
main.cpp:110:49: warning: ‘%s’ directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=]
  110 |     (void) sprintf( output_message, "\n%s: %s:  %s\n", programname, tag, message);
      |                                                 ^~
......
  779 |                     print_error( logFile, SUGGESTION, message );
      |                                                       ~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from main.cpp:40:
In function ‘sprintf’,
    inlined from ‘print_error(_IO_FILE*, int, char*)’ at main.cpp:110:19,
    inlined from ‘main’ at main.cpp:779:32:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 18 or more bytes (assuming 273) into a destination of size 256
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-timesys.o `test -f 'timesys.cpp' || echo './'`timesys.cpp
main.cpp: In function ‘main’:
main.cpp:1446:46: warning: ‘cA’ may be used uninitialized [-Wmaybe-uninitialized]
 1446 |                 gridmap[ligtype].cA[rectype] = cA;
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
main.cpp:388:8: note: ‘cA’ was declared here
  388 | double cA, cB, tmpconst;
      |        ^~
main.cpp:1447:46: warning: ‘cB’ may be used uninitialized [-Wmaybe-uninitialized]
 1447 |                 gridmap[ligtype].cB[rectype] = cB;
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
main.cpp:388:12: note: ‘cB’ was declared here
  388 | double cA, cB, tmpconst;
      |            ^~
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-timesyshms.o `test -f 'timesyshms.cpp' || echo './'`timesyshms.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-printhms.o `test -f 'printhms.cpp' || echo './'`printhms.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-prHMSfixed.o `test -f 'prHMSfixed.cpp' || echo './'`prHMSfixed.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-printdate.o `test -f 'printdate.cpp' || echo './'`printdate.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-strindex.o `test -f 'strindex.cpp' || echo './'`strindex.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-banner.o `test -f 'banner.cpp' || echo './'`banner.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-gpfparser.o `test -f 'gpfparser.cpp' || echo './'`gpfparser.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-parsetypes.o `test -f 'parsetypes.cpp' || echo './'`parsetypes.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-atom_parameter_manager.o `test -f 'atom_parameter_manager.cpp' || echo './'`atom_parameter_manager.cpp
parsetypes.cpp: In function ‘int parsetypes(char*, char**, int)’:
parsetypes.cpp:58:9: warning: variable ‘index’ set but not used [-Wunused-but-set-variable=]
   58 |     int index = 0;
      |         ^~~~~
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-read_parameter_library.o `test -f 'read_parameter_library.cpp' || echo './'`read_parameter_library.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-parse_param_line.o `test -f 'parse_param_line.cpp' || echo './'`parse_param_line.cpp
read_parameter_library.cpp: In function ‘void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)’:
read_parameter_library.cpp:207:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  207 |     register int counter = 0;
      |                  ^~~~~~~
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-distdepdiel.o `test -f 'distdepdiel.cpp' || echo './'`distdepdiel.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-mingw_getrusage.o `test -f 'mingw_getrusage.cpp' || echo './'`mingw_getrusage.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-calc_vina_potential.o `test -f 'calc_vina_potential.cpp' || echo './'`calc_vina_potential.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -c -o autogrid4-stop.o `test -f 'stop.cpp' || echo './'`stop.cpp
calc_vina_potential.cpp: In function ‘int calc_vina_potential(int, const char (*)[3], int, const char (*)[3], EnergyTables*)’:
calc_vina_potential.cpp:110:9: warning: variable ‘hydrogen’ set but not used [-Wunused-but-set-variable=]
  110 |     int hydrogen=-1;
      |         ^~~~~~~~
calc_vina_potential.cpp:113:9: warning: variable ‘oxygen’ set but not used [-Wunused-but-set-variable=]
  113 |     int oxygen=-1;
      |         ^~~~~~
calc_vina_potential.cpp:114:9: warning: variable ‘nitrogen’ set but not used [-Wunused-but-set-variable=]
  114 |     int nitrogen=-1;
      |         ^~~~~~~~
calc_vina_potential.cpp:115:9: warning: variable ‘fluorine’ set but not used [-Wunused-but-set-variable=]
  115 |     int fluorine=-1;
      |         ^~~~~~~~
calc_vina_potential.cpp:116:9: warning: variable ‘chlorine’ set but not used [-Wunused-but-set-variable=]
  116 |     int chlorine=-1;
      |         ^~~~~~~~
calc_vina_potential.cpp:117:9: warning: variable ‘bromine’ set but not used [-Wunused-but-set-variable=]
  117 |     int bromine=-1;
      |         ^~~~~~~
calc_vina_potential.cpp:118:9: warning: variable ‘iodine’ set but not used [-Wunused-but-set-variable=]
  118 |     int iodine=-1;
      |         ^~~~~~
calc_vina_potential.cpp:283:56: warning: array subscript 16384 is above array bounds of ‘Real[14][14]’ [-Warray-bounds=]
  283 |      printf("last value=%f\n", p_et->e_vdW_Hb[i][indx_r][ia]);
      |                                ~~~~~~~~~~~~~~~~~~~~~~~~^
In file included from atom_parameter_manager.h:30,
                 from calc_vina_potential.cpp:26:
./../autodock/structs.h:260:10: note: while referencing ‘e_vdW_Hb’
  260 |     Real e_vdW_Hb[NEINT][MAX_ATOM_TYPES][MAX_ATOM_TYPES];  // vdW & Hb energies
      |          ^~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from ./../autodock/autocomm.h:35,
                 from autogrid.h:27,
                 from calc_vina_potential.cpp:25:
In function ‘printf’,
    inlined from ‘calc_vina_potential(int, char const (*) [3], int, char const (*) [3], energy_tables*)’ at calc_vina_potential.cpp:284:12:
/usr/include/bits/stdio2.h:118:23: warning: ‘rddist’ may be used uninitialized [-Wmaybe-uninitialized]
  118 |   return __printf_chk (__USE_FORTIFY_LEVEL - 1, __fmt, __va_arg_pack ());
      |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
calc_vina_potential.cpp: In function ‘calc_vina_potential(int, char const (*) [3], int, char const (*) [3], energy_tables*)’:
calc_vina_potential.cpp:57:12: note: ‘rddist’ was declared here
   57 |     double rddist;
      |            ^~~~~~
calc_vina_potential.cpp:283:12: warning: ‘i’ may be used uninitialized [-Wmaybe-uninitialized]
  283 |      printf("last value=%f\n", p_et->e_vdW_Hb[i][indx_r][ia]);
      |      ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
calc_vina_potential.cpp:60:13: note: ‘i’ was declared here
   60 |     int ia, i,   indx_r;
      |             ^
g++  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection    -Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o autogrid4 autogrid4-main.o autogrid4-check_size.o autogrid4-setflags.o autogrid4-timesys.o autogrid4-timesyshms.o autogrid4-printhms.o autogrid4-prHMSfixed.o autogrid4-printdate.o autogrid4-strindex.o autogrid4-banner.o autogrid4-gpfparser.o autogrid4-parsetypes.o autogrid4-atom_parameter_manager.o autogrid4-read_parameter_library.o autogrid4-parse_param_line.o autogrid4-distdepdiel.o autogrid4-mingw_getrusage.o autogrid4-calc_vina_potential.o autogrid4-stop.o  -lm 
make[1]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Ljn9fm
+ umask 022
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ '[' /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
++ dirname /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/autodocksuite-4.2.6-build
+ mkdir /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd src
+ make -C autodock install DESTDIR=/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
make: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
make  install-am
make[1]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
make[2]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
 /usr/bin/mkdir -p '/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/bin'
  /usr/bin/install -c autodock4 autodock4.omp '/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
make[1]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
make: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
+ make -C autogrid install DESTDIR=/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
make: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
make  install-am
make[1]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
make[2]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
 /usr/bin/mkdir -p '/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/bin'
  /usr/bin/install -c autogrid4 '/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
make[1]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
make: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
+ rm -f /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT//usr/bin/autodock4.omp
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 4.2.6-25.fc44 --unique-debug-suffix -4.2.6-25.fc44.s390x --unique-debug-src-base autodocksuite-4.2.6-25.fc44.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/autodocksuite-4.2.6-build/src
find-debuginfo: starting
Extracting debug info from 2 files
DWARF-compressing 2 files
sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/autodocksuite-4.2.6-25.fc44.s390x
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ COMPRESS='gzip -9 -n'
+ COMPRESS_EXT=.gz
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-det --brp -j2 /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
Scanned 13 directories and 218 files,
    processed 0 inodes,
    0 modified (0 replaced + 0 rewritten),
    0 unsupported format, 0 errors
+ /usr/bin/linkdupes --brp /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr
Scanned 12 directories and 218 files,
    considered 218 files, read 28 files, linked 14 files, 0 errors
    sum of sizes of linked files: 45784 bytes
Reading /builddir/build/BUILD/autodocksuite-4.2.6-build/SPECPARTS/rpm-debuginfo.specpart
Processing files: autodocksuite-4.2.6-25.fc44.s390x
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.TmDcVW
+ umask 022
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ cd src
+ LICENSEDIR=/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/share/licenses/autodocksuite
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/share/licenses/autodocksuite
+ cp -pr /builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock/COPYING /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/share/licenses/autodocksuite
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: autodocksuite = 4.2.6-25.fc44 autodocksuite(s390-64) = 4.2.6-25.fc44
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) rtld(GNU_HASH)
Processing files: autodocksuite-debugsource-4.2.6-25.fc44.s390x
Provides: autodocksuite-debugsource = 4.2.6-25.fc44 autodocksuite-debugsource(s390-64) = 4.2.6-25.fc44
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: autodocksuite-debuginfo-4.2.6-25.fc44.s390x
Provides: autodocksuite-debuginfo = 4.2.6-25.fc44 autodocksuite-debuginfo(s390-64) = 4.2.6-25.fc44 debuginfo(build-id) = 3f4784e5a41f150726ece8f054a29692dbd05c3e debuginfo(build-id) = b810c6b6c38cd0e6e16460f5c29642828c5d9bf1
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: autodocksuite-debugsource(s390-64) = 4.2.6-25.fc44
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
Wrote: /builddir/build/RPMS/autodocksuite-debuginfo-4.2.6-25.fc44.s390x.rpm
Wrote: /builddir/build/RPMS/autodocksuite-4.2.6-25.fc44.s390x.rpm
Wrote: /builddir/build/RPMS/autodocksuite-debugsource-4.2.6-25.fc44.s390x.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.NyXTQc
+ umask 022
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ test -d /builddir/build/BUILD/autodocksuite-4.2.6-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/autodocksuite-4.2.6-build
+ rm -rf /builddir/build/BUILD/autodocksuite-4.2.6-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild autodocksuite-4.2.6-25.fc44.src.rpm
Finish: build phase for autodocksuite-4.2.6-25.fc44.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1766663355.794443/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/autodocksuite-4.2.6-25.fc44.src.rpm) Config(child) 1 minutes 4 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "autodocksuite-debuginfo",
            "epoch": null,
            "version": "4.2.6",
            "release": "25.fc44",
            "arch": "s390x"
        },
        {
            "name": "autodocksuite-debugsource",
            "epoch": null,
            "version": "4.2.6",
            "release": "25.fc44",
            "arch": "s390x"
        },
        {
            "name": "autodocksuite",
            "epoch": null,
            "version": "4.2.6",
            "release": "25.fc44",
            "arch": "s390x"
        },
        {
            "name": "autodocksuite",
            "epoch": null,
            "version": "4.2.6",
            "release": "25.fc44",
            "arch": "src"
        }
    ]
}
RPMResults finished