Warning: Permanently added '3.88.52.32' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9942730-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64


Version: 1.6
PID: 138009
Logging PID: 138011
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 9942730,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '79e9c8c1fd04cbbe3361623c686643114dd25444',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/autodocksuite',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'autodocksuite',
 'package_version': '4.2.6-25',
 'project_dirname': 'mbp-gcc-16',
 'project_name': 'mbp-gcc-16',
 'project_owner': 'siddhesh',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/siddhesh/mbp-gcc-16/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'https://kojipkgs.fedoraproject.org/repos/f44-build-side-124978/latest/$basearch/',
            'id': 'https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch',
            'name': 'Additional repo https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch'}],
 'sandbox': 'siddhesh/mbp-gcc-16--siddhesh',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'siddhesh',
 'tags': [],
 'task_id': '9942730-fedora-rawhide-x86_64',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/autodocksuite /var/lib/copr-rpmbuild/workspace/workdir-n3hsq02x/autodocksuite --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/autodocksuite', '/var/lib/copr-rpmbuild/workspace/workdir-n3hsq02x/autodocksuite', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-n3hsq02x/autodocksuite'...

Running: git checkout 79e9c8c1fd04cbbe3361623c686643114dd25444 --

cmd: ['git', 'checkout', '79e9c8c1fd04cbbe3361623c686643114dd25444', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-n3hsq02x/autodocksuite
rc: 0
stdout: 
stderr: Note: switching to '79e9c8c1fd04cbbe3361623c686643114dd25444'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 79e9c8c automatic import of autodocksuite

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-n3hsq02x/autodocksuite
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading autodocksuite-4.2.6-src.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o autodocksuite-4.2.6-src.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/siddhesh/mbp-gcc-16/autodocksuite/autodocksuite-4.2.6-src.tar.gz/md5/f4942c8e8c47aca7f3a2ae8794259067/autodocksuite-4.2.6-src.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 33.7M  100 33.7M    0     0  35.8M      0 --:--:-- --:--:-- --:--:-- 35.8M
INFO: Reading stdout from command: md5sum autodocksuite-4.2.6-src.tar.gz

tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-n3hsq02x/autodocksuite/autodocksuite.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-n3hsq02x/autodocksuite --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1766654750.620361 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.6 starting (python version = 3.13.7, NVR = mock-6.6-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-n3hsq02x/autodocksuite/autodocksuite.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-n3hsq02x/autodocksuite --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1766654750.620361 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-n3hsq02x/autodocksuite/autodocksuite.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.6
INFO: Mock Version: 6.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1766654750.620361/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Tagging container image as mock-bootstrap-1ade8bdd-46ed-4bec-b062-a79e0f317e36
INFO: Checking that 22510d11cafbb8432e42074df9740f12f5d1ae024d1691e1e840a8a03ad9bb5a image matches host's architecture
INFO: Copy content of container 22510d11cafbb8432e42074df9740f12f5d1ae024d1691e1e840a8a03ad9bb5a to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1766654750.620361/root
INFO: mounting 22510d11cafbb8432e42074df9740f12f5d1ae024d1691e1e840a8a03ad9bb5a with podman image mount
INFO: image 22510d11cafbb8432e42074df9740f12f5d1ae024d1691e1e840a8a03ad9bb5a as /var/lib/containers/storage/overlay/4f59a40c897e1d5a3dc64832ecfad2706b8a96f39c21590f52d7f3ae0b9d8806/merged
INFO: umounting image 22510d11cafbb8432e42074df9740f12f5d1ae024d1691e1e840a8a03ad9bb5a (/var/lib/containers/storage/overlay/4f59a40c897e1d5a3dc64832ecfad2706b8a96f39c21590f52d7f3ae0b9d8806/merged) with podman image umount
INFO: Removing image mock-bootstrap-1ade8bdd-46ed-4bec-b062-a79e0f317e36
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1766654750.620361/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-1.fc44.x86_64
  rpm-sequoia-1.10.0-1.fc44.x86_64
  dnf5-5.3.0.0-3.fc44.x86_64
  dnf5-plugins-5.3.0.0-3.fc44.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 Additional repo https_kojipkgs_fedorap 100% |   4.4 KiB/s |   3.5 KiB |  00m01s
 Copr repository                        100% |   1.9 KiB/s |   1.5 KiB |  00m01s
 fedora                                 100% |  25.4 KiB/s |  28.6 KiB |  00m01s
Repositories loaded.
Package                            Arch   Version                      Repository                                                                        Size
Installing group/module packages:
 bash                              x86_64 0:5.3.0-2.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   8.4 MiB
 bzip2                             x86_64 0:1.0.8-21.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  95.3 KiB
 coreutils                         x86_64 0:9.9-1.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   5.4 MiB
 cpio                              x86_64 0:2.15-6.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.1 MiB
 diffutils                         x86_64 0:3.12-3.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.6 MiB
 fedora-release-common             noarch 0:44-0.10                    https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  20.6 KiB
 findutils                         x86_64 1:4.10.0-6.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.8 MiB
 gawk                              x86_64 0:5.3.2-2.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.8 MiB
 glibc-minimal-langpack            x86_64 0:2.42.9000-17.fc44          fedora                                                                         0.0   B
 grep                              x86_64 0:3.12-2.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.0 MiB
 gzip                              x86_64 0:1.14-1.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 397.8 KiB
 info                              x86_64 0:7.2-7.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 357.9 KiB
 patch                             x86_64 0:2.8-3.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 226.6 KiB
 redhat-rpm-config                 noarch 0:343-19.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 183.6 KiB
 rpm-build                         x86_64 0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 287.5 KiB
 sed                               x86_64 0:4.9-6.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 857.3 KiB
 shadow-utils                      x86_64 2:4.18.0-7.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.9 MiB
 tar                               x86_64 2:1.35-6.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.9 MiB
 unzip                             x86_64 0:6.0-68.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 390.3 KiB
 util-linux                        x86_64 0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.5 MiB
 which                             x86_64 0:2.23-3.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  83.5 KiB
 xz                                x86_64 1:5.8.1-4.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.3 MiB
Installing dependencies:
 R-srpm-macros                     noarch 0:1.3.0-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.2 KiB
 add-determinism                   x86_64 0:0.7.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.3 MiB
 alternatives                      x86_64 0:1.33-3.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  62.2 KiB
 ansible-srpm-macros               noarch 0:1-18.1.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  35.7 KiB
 audit-libs                        x86_64 0:4.1.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 378.8 KiB
 binutils                          x86_64 0:2.45.50-9.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  27.0 MiB
 build-reproducibility-srpm-macros noarch 0:0.7.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.2 KiB
 bzip2-libs                        x86_64 0:1.0.8-21.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  80.6 KiB
 ca-certificates                   noarch 0:2025.2.80_v9.0.304-2.fc44  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.7 MiB
 cmake-srpm-macros                 noarch 0:3.31.10-3.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 524.0   B
 coreutils-common                  x86_64 0:9.9-1.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  11.2 MiB
 crypto-policies                   noarch 0:20251128-1.git19878fe.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 132.6 KiB
 curl                              x86_64 0:8.18.0~rc2-1.fc44          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 471.5 KiB
 cyrus-sasl-lib                    x86_64 0:2.1.28-33.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.3 MiB
 debugedit                         x86_64 0:5.2-3.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 214.0 KiB
 dwz                               x86_64 0:0.16-2.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 287.1 KiB
 ed                                x86_64 0:1.22.3-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 148.9 KiB
 efi-srpm-macros                   noarch 0:6-5.fc44                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  40.2 KiB
 elfutils                          x86_64 0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.9 MiB
 elfutils-debuginfod-client        x86_64 0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  84.0 KiB
 elfutils-default-yama-scope       noarch 0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.8 KiB
 elfutils-libelf                   x86_64 0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.1 MiB
 elfutils-libs                     x86_64 0:0.194-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 687.5 KiB
 fedora-gpg-keys                   noarch 0:44-0.1                     https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 131.2 KiB
 fedora-release                    noarch 0:44-0.10                    https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   0.0   B
 fedora-release-identity-basic     noarch 0:44-0.10                    https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 664.0   B
 fedora-repos                      noarch 0:44-0.1                     https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   4.9 KiB
 fedora-repos-rawhide              noarch 0:44-0.1                     https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.2 KiB
 file                              x86_64 0:5.46-8.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 100.2 KiB
 file-libs                         x86_64 0:5.46-8.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  11.9 MiB
 filesystem                        x86_64 0:3.18-50.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 112.0   B
 filesystem-srpm-macros            noarch 0:3.18-50.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  38.2 KiB
 fonts-srpm-macros                 noarch 1:5.0.0-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  55.8 KiB
 forge-srpm-macros                 noarch 0:0.4.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  38.9 KiB
 fpc-srpm-macros                   noarch 0:1.3-15.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 144.0   B
 gap-srpm-macros                   noarch 0:2-1.fc44                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.1 KiB
 gdb-minimal                       x86_64 0:16.3-6.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  13.3 MiB
 gdbm-libs                         x86_64 1:1.23-10.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 129.9 KiB
 ghc-srpm-macros                   noarch 0:1.9.2-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 779.0   B
 glibc                             x86_64 0:2.42.9000-17.fc44          fedora                                                                         6.8 MiB
 glibc-common                      x86_64 0:2.42.9000-17.fc44          fedora                                                                         1.0 MiB
 glibc-gconv-extra                 x86_64 0:2.42.9000-17.fc44          fedora                                                                         7.2 MiB
 gmp                               x86_64 1:6.3.0-4.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 815.3 KiB
 gnat-srpm-macros                  noarch 0:6-8.fc43                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.0 KiB
 gnulib-l10n                       noarch 0:20241231-1.fc44            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 655.0 KiB
 gnupg2                            x86_64 0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   6.5 MiB
 gnupg2-dirmngr                    x86_64 0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 618.4 KiB
 gnupg2-gpg-agent                  x86_64 0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 671.4 KiB
 gnupg2-gpgconf                    x86_64 0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 250.0 KiB
 gnupg2-keyboxd                    x86_64 0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 201.4 KiB
 gnupg2-verify                     x86_64 0:2.4.8-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 348.5 KiB
 gnutls                            x86_64 0:3.8.11-6.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.6 MiB
 go-srpm-macros                    noarch 0:3.8.0-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  61.9 KiB
 gpgverify                         noarch 0:2.2-3.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   8.7 KiB
 ima-evm-utils-libs                x86_64 0:1.6.2-7.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  60.7 KiB
 jansson                           x86_64 0:2.14-3.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  89.1 KiB
 java-srpm-macros                  noarch 0:1-7.fc43                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 870.0   B
 json-c                            x86_64 0:0.18-7.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  82.7 KiB
 kernel-srpm-macros                noarch 0:1.0-27.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 KiB
 keyutils-libs                     x86_64 0:1.6.3-6.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  54.3 KiB
 krb5-libs                         x86_64 0:1.21.3-10.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.3 MiB
 libacl                            x86_64 0:2.3.2-4.fc44               copr_base                                                                     35.8 KiB
 libarchive                        x86_64 0:3.8.4-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 955.3 KiB
 libassuan                         x86_64 0:2.5.7-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 163.8 KiB
 libatomic                         x86_64 0:16.0.0-0.3.fc44            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  36.7 KiB
 libattr                           x86_64 0:2.5.2-6.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  24.4 KiB
 libblkid                          x86_64 0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 262.3 KiB
 libbrotli                         x86_64 0:1.2.0-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 865.4 KiB
 libcap                            x86_64 0:2.77-1.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 209.1 KiB
 libcap-ng                         x86_64 0:0.8.5-8.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  68.9 KiB
 libcom_err                        x86_64 0:1.47.3-3.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  63.1 KiB
 libcurl                           x86_64 0:8.18.0~rc2-1.fc44          https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 984.7 KiB
 libeconf                          x86_64 0:0.7.9-2.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  64.9 KiB
 libevent                          x86_64 0:2.1.12-16.fc43             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 883.1 KiB
 libfdisk                          x86_64 0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 380.3 KiB
 libffi                            x86_64 0:3.5.2-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  83.8 KiB
 libfsverity                       x86_64 0:1.6-3.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  28.5 KiB
 libgcc                            x86_64 0:16.0.0-0.3.fc44            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 270.7 KiB
 libgcrypt                         x86_64 0:1.11.2-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.6 MiB
 libgomp                           x86_64 0:16.0.0-0.3.fc44            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 570.9 KiB
 libgpg-error                      x86_64 0:1.58-1.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 941.6 KiB
 libidn2                           x86_64 0:2.3.8-2.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 552.5 KiB
 libksba                           x86_64 0:1.6.7-4.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 398.5 KiB
 liblastlog2                       x86_64 0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  33.6 KiB
 libmount                          x86_64 0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 372.6 KiB
 libnghttp2                        x86_64 0:1.68.0-2.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 162.2 KiB
 libnghttp3                        x86_64 0:1.14.0-1.fc44              fedora                                                                       155.2 KiB
 libpkgconf                        x86_64 0:2.3.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  78.1 KiB
 libpsl                            x86_64 0:0.21.5-6.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  76.4 KiB
 libselinux                        x86_64 0:3.9-5.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 193.1 KiB
 libselinux-utils                  x86_64 0:3.9-5.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 309.0 KiB
 libsemanage                       x86_64 0:3.9-4.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 308.5 KiB
 libsepol                          x86_64 0:3.9-2.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 822.0 KiB
 libsmartcols                      x86_64 0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 180.3 KiB
 libssh                            x86_64 0:0.11.3-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 567.1 KiB
 libssh-config                     noarch 0:0.11.3-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 277.0   B
 libstdc++                         x86_64 0:16.0.0-0.3.fc44            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.9 MiB
 libtasn1                          x86_64 0:4.20.0-2.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 176.3 KiB
 libtool-ltdl                      x86_64 0:2.5.4-9.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  70.0 KiB
 libunistring                      x86_64 0:1.1-10.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.7 MiB
 libusb1                           x86_64 0:1.0.29-4.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 171.3 KiB
 libuuid                           x86_64 0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  37.2 KiB
 libverto                          x86_64 0:0.3.2-11.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  25.4 KiB
 libxcrypt                         x86_64 0:4.5.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 285.3 KiB
 libxml2                           x86_64 0:2.12.10-5.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.7 MiB
 libzstd                           x86_64 0:1.5.7-3.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 940.3 KiB
 linkdupes                         x86_64 0:0.7.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 838.7 KiB
 lua-libs                          x86_64 0:5.4.8-4.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 281.9 KiB
 lua-srpm-macros                   noarch 0:1-16.fc43                  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.3 KiB
 lz4-libs                          x86_64 0:1.10.0-3.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 161.4 KiB
 mpfr                              x86_64 0:4.2.2-2.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 832.8 KiB
 ncurses-base                      noarch 0:6.5-8.20250614.fc44        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 328.1 KiB
 ncurses-libs                      x86_64 0:6.5-8.20250614.fc44        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 946.4 KiB
 nettle                            x86_64 0:3.10.1-2.fc43              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 790.6 KiB
 ngtcp2                            x86_64 0:1.18.0-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 314.3 KiB
 ngtcp2-crypto-ossl                x86_64 0:1.18.0-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  51.7 KiB
 npth                              x86_64 0:1.8-3.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  49.6 KiB
 ocaml-srpm-macros                 noarch 0:11-2.fc43                  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 KiB
 openblas-srpm-macros              noarch 0:2-20.fc43                  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 112.0   B
 openldap                          x86_64 0:2.6.10-4.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 659.8 KiB
 openssl-libs                      x86_64 1:3.5.4-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   8.9 MiB
 p11-kit                           x86_64 0:0.25.8-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.3 MiB
 p11-kit-trust                     x86_64 0:0.25.8-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 446.5 KiB
 package-notes-srpm-macros         noarch 0:0.5-14.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.6 KiB
 pam-libs                          x86_64 0:1.7.1-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 126.8 KiB
 pcre2                             x86_64 0:10.47-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 702.6 KiB
 pcre2-syntax                      noarch 0:10.47-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 281.9 KiB
 perl-srpm-macros                  noarch 0:1-60.fc43                  https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 861.0   B
 pkgconf                           x86_64 0:2.3.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  88.5 KiB
 pkgconf-m4                        noarch 0:2.3.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  14.4 KiB
 pkgconf-pkg-config                x86_64 0:2.3.0-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 989.0   B
 policycoreutils                   x86_64 0:3.9-5.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 683.5 KiB
 popt                              x86_64 0:1.19-9.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 132.8 KiB
 publicsuffix-list-dafsa           noarch 0:20250616-2.fc43            https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  69.1 KiB
 pyproject-srpm-macros             noarch 0:1.18.6-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.9 KiB
 python-srpm-macros                noarch 0:3.14-9.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  51.6 KiB
 qt5-srpm-macros                   noarch 0:5.15.18-1.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 500.0   B
 qt6-srpm-macros                   noarch 0:6.10.1-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 464.0   B
 readline                          x86_64 0:8.3-2.fc43                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 511.7 KiB
 rpm                               x86_64 0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   3.1 MiB
 rpm-build-libs                    x86_64 0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 264.4 KiB
 rpm-libs                          x86_64 0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 933.8 KiB
 rpm-plugin-selinux                x86_64 0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  12.0 KiB
 rpm-sequoia                       x86_64 0:1.10.0-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.5 MiB
 rpm-sign-libs                     x86_64 0:6.0.1-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  39.7 KiB
 rust-srpm-macros                  noarch 0:28.4-1.fc44                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   5.5 KiB
 selinux-policy                    noarch 0:42.19-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  32.0 KiB
 selinux-policy-targeted           noarch 0:42.19-1.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  18.7 MiB
 setup                             noarch 0:2.15.0-27.fc44             https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 724.9 KiB
 sqlite-libs                       x86_64 0:3.51.0-1.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.5 MiB
 systemd-libs                      x86_64 0:259-1.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   2.3 MiB
 systemd-standalone-sysusers       x86_64 0:259-1.fc44                 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 293.5 KiB
 tpm2-tss                          x86_64 0:4.1.3-8.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.6 MiB
 tree-sitter-srpm-macros           noarch 0:0.4.2-1.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   8.3 KiB
 util-linux-core                   x86_64 0:2.41.3-8.fc44              https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.5 MiB
 xxhash-libs                       x86_64 0:0.8.3-3.fc43               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  90.2 KiB
 xz-libs                           x86_64 1:5.8.1-4.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 217.8 KiB
 zig-srpm-macros                   noarch 0:1-5.fc43                   https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.1 KiB
 zip                               x86_64 0:3.0-44.fc43                https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 694.5 KiB
 zlib-ng-compat                    x86_64 0:2.3.2-2.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 161.5 KiB
 zstd                              x86_64 0:1.5.7-3.fc44               https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 506.2 KiB
Installing groups:
 Buildsystem building group                                                                                                                                  

Transaction Summary:
 Installing:       183 packages

Total size of inbound packages is 66 MiB. Need to download 0 B.
After this operation, 219 MiB extra will be used (install 219 MiB, remove 0 B).
[  1/183] tar-2:1.35-6.fc43.x86_64      100% |   0.0   B/s |   0.0   B |  00m00s
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[  2/183] bzip2-0:1.0.8-21.fc43.x86_64  100% |   0.0   B/s |   0.0   B |  00m00s
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[  3/183] redhat-rpm-config-0:343-19.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[  4/183] rpm-build-0:6.0.1-1.fc44.x86_ 100% |   0.0   B/s |   0.0   B |  00m00s
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[  5/183] unzip-0:6.0-68.fc44.x86_64    100% |   0.0   B/s |   0.0   B |  00m00s
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[  6/183] cpio-0:2.15-6.fc43.x86_64     100% |   0.0   B/s |   0.0   B |  00m00s
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[  7/183] which-0:2.23-3.fc43.x86_64    100% |   0.0   B/s |   0.0   B |  00m00s
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[  8/183] bash-0:5.3.0-2.fc43.x86_64    100% |   0.0   B/s |   0.0   B |  00m00s
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[  9/183] coreutils-0:9.9-1.fc44.x86_64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 10/183] grep-0:3.12-2.fc43.x86_64     100% |   0.0   B/s |   0.0   B |  00m00s
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[ 11/183] patch-0:2.8-3.fc44.x86_64     100% |   0.0   B/s |   0.0   B |  00m00s
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[ 12/183] sed-0:4.9-6.fc44.x86_64       100% |   0.0   B/s |   0.0   B |  00m00s
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[ 13/183] shadow-utils-2:4.18.0-7.fc44. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 14/183] util-linux-0:2.41.3-8.fc44.x8 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 15/183] diffutils-0:3.12-3.fc43.x86_6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 16/183] fedora-release-common-0:44-0. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 17/183] findutils-1:4.10.0-6.fc43.x86 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 18/183] gawk-0:5.3.2-2.fc43.x86_64    100% |   0.0   B/s |   0.0   B |  00m00s
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[ 19/183] glibc-minimal-langpack-0:2.42 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 20/183] gzip-0:1.14-1.fc44.x86_64     100% |   0.0   B/s |   0.0   B |  00m00s
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[ 21/183] info-0:7.2-7.fc44.x86_64      100% |   0.0   B/s |   0.0   B |  00m00s
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[ 22/183] xz-1:5.8.1-4.fc44.x86_64      100% |   0.0   B/s |   0.0   B |  00m00s
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[ 23/183] glibc-common-0:2.42.9000-17.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 24/183] glibc-0:2.42.9000-17.fc44.x86 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 25/183] glibc-gconv-extra-0:2.42.9000 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 26/183] filesystem-0:3.18-50.fc43.x86 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 27/183] libgcc-0:16.0.0-0.3.fc44.x86_ 100% |   0.0   B/s |   0.0   B |  00m00s
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[179/183] keyutils-libs-0:1.6.3-6.fc43. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[180/183] libcom_err-0:1.47.3-3.fc44.x8 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[181/183] libverto-0:0.3.2-11.fc43.x86_ 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[182/183] libssh-config-0:0.11.3-1.fc44 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[183/183] publicsuffix-list-dafsa-0:202 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
--------------------------------------------------------------------------------
[183/183] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
Running transaction
Importing OpenPGP key 0x6D9F90A6:
 UserID     : "Fedora (44) <fedora-44-primary@fedoraproject.org>"
 Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary
The key was successfully imported.
Importing OpenPGP key 0x6D9F90A6:
 UserID     : "Fedora (44) <fedora-44-primary@fedoraproject.org>"
 Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary
The key was successfully imported.
Importing OpenPGP key 0x31645531:
 UserID     : "Fedora (43) <fedora-43-primary@fedoraproject.org>"
 Fingerprint: C6E7F081CF80E13146676E88829B606631645531
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary
The key was successfully imported.
Importing OpenPGP key 0xF577861E:
 UserID     : "Fedora (45) <fedora-45-primary@fedoraproject.org>"
 Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary
The key was successfully imported.
[  1/185] Verify package files          100% | 703.0   B/s | 183.0   B |  00m00s
>>> Running %pretrans scriptlet: filesystem-0:3.18-50.fc43.x86_64
>>> Finished %pretrans scriptlet: filesystem-0:3.18-50.fc43.x86_64
>>> [RPM] /var/lib/mock/fedora-rawhide-x86_64-1766654750.620361/root/var/cache/dnf/copr_base-a2b79860a4d039f2/packages/libacl-2.3.2-4.fc44.x86_64.rpm: Header OpenPGP V4 RSA/SHA256 signature, key ID 52ac7d71d4a9769d: NOKEY
[  2/185] Prepare transaction           100% |   3.4 KiB/s | 183.0   B |  00m00s
[  3/185] Installing libgcc-0:16.0.0-0. 100% | 266.0 MiB/s | 272.4 KiB |  00m00s
[  4/185] Installing publicsuffix-list- 100% |   0.0   B/s |  69.8 KiB |  00m00s
[  5/185] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  6/185] Installing fedora-release-ide 100% |   0.0   B/s | 920.0   B |  00m00s
[  7/185] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[  8/185] Installing fedora-gpg-keys-0: 100% |  43.7 MiB/s | 179.0 KiB |  00m00s
[  9/185] Installing fedora-repos-0:44- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[ 10/185] Installing fedora-release-com 100% |  24.3 MiB/s |  24.9 KiB |  00m00s
[ 11/185] Installing fedora-release-0:4 100% |  15.1 KiB/s | 124.0   B |  00m00s
>>> Running sysusers scriptlet: setup-0:2.15.0-27.fc44.noarch
>>> Finished sysusers scriptlet: setup-0:2.15.0-27.fc44.noarch
>>> Scriptlet output:
>>> Creating group 'adm' with GID 4.
>>> Creating group 'audio' with GID 63.
>>> Creating group 'cdrom' with GID 11.
>>> Creating group 'clock' with GID 103.
>>> Creating group 'dialout' with GID 18.
>>> Creating group 'disk' with GID 6.
>>> Creating group 'floppy' with GID 19.
>>> Creating group 'ftp' with GID 50.
>>> Creating group 'games' with GID 20.
>>> Creating group 'input' with GID 104.
>>> Creating group 'kmem' with GID 9.
>>> Creating group 'kvm' with GID 36.
>>> Creating group 'lock' with GID 54.
>>> Creating group 'lp' with GID 7.
>>> Creating group 'mail' with GID 12.
>>> Creating group 'man' with GID 15.
>>> Creating group 'mem' with GID 8.
>>> Creating group 'nobody' with GID 65534.
>>> Creating group 'render' with GID 105.
>>> Creating group 'root' with GID 0.
>>> Creating group 'sgx' with GID 106.
>>> Creating group 'sys' with GID 3.
>>> Creating group 'tape' with GID 33.
>>> Creating group 'tty' with GID 5.
>>> Creating group 'users' with GID 100.
>>> Creating group 'utmp' with GID 22.
>>> Creating group 'video' with GID 39.
>>> Creating group 'wheel' with GID 10.
>>> Creating user 'adm' (adm) with UID 3 and GID 4.
>>> Creating group 'bin' with GID 1.
>>> Creating user 'bin' (bin) with UID 1 and GID 1.
>>> Creating group 'daemon' with GID 2.
>>> Creating user 'daemon' (daemon) with UID 2 and GID 2.
>>> Creating user 'ftp' (FTP User) with UID 14 and GID 50.
>>> Creating user 'games' (games) with UID 12 and GID 100.
>>> Creating user 'halt' (halt) with UID 7 and GID 0.
>>> Creating user 'lp' (lp) with UID 4 and GID 7.
>>> Creating user 'mail' (mail) with UID 8 and GID 12.
>>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534.
>>> Creating user 'operator' (operator) with UID 11 and GID 0.
>>> Creating user 'root' (Super User) with UID 0 and GID 0.
>>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0.
>>> Creating user 'sync' (sync) with UID 5 and GID 0.
>>> 
[ 12/185] Installing setup-0:2.15.0-27. 100% |  54.9 MiB/s | 730.6 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 13/185] Installing filesystem-0:3.18- 100% |   2.8 MiB/s | 212.8 KiB |  00m00s
[ 14/185] Installing gnulib-l10n-0:2024 100% | 215.5 MiB/s | 661.9 KiB |  00m00s
[ 15/185] Installing coreutils-common-0 100% | 401.0 MiB/s |  11.2 MiB |  00m00s
[ 16/185] Installing pcre2-syntax-0:10. 100% | 277.7 MiB/s | 284.3 KiB |  00m00s
[ 17/185] Installing ncurses-base-0:6.5 100% |  86.3 MiB/s | 353.5 KiB |  00m00s
[ 18/185] Installing bash-0:5.3.0-2.fc4 100% | 281.0 MiB/s |   8.4 MiB |  00m00s
[ 19/185] Installing glibc-common-0:2.4 100% |  64.0 MiB/s |   1.0 MiB |  00m00s
[ 20/185] Installing glibc-gconv-extra- 100% | 280.3 MiB/s |   7.3 MiB |  00m00s
[ 21/185] Installing glibc-0:2.42.9000- 100% | 190.3 MiB/s |   6.8 MiB |  00m00s
[ 22/185] Installing ncurses-libs-0:6.5 100% | 232.7 MiB/s | 953.0 KiB |  00m00s
[ 23/185] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 24/185] Installing zlib-ng-compat-0:2 100% | 158.6 MiB/s | 162.4 KiB |  00m00s
[ 25/185] Installing bzip2-libs-0:1.0.8 100% |   0.0   B/s |  81.7 KiB |  00m00s
[ 26/185] Installing libgpg-error-0:1.5 100% |  66.1 MiB/s | 947.5 KiB |  00m00s
[ 27/185] Installing libassuan-0:2.5.7- 100% | 161.7 MiB/s | 165.6 KiB |  00m00s
[ 28/185] Installing libgcrypt-0:1.11.2 100% | 394.0 MiB/s |   1.6 MiB |  00m00s
[ 29/185] Installing readline-0:8.3-2.f 100% | 250.9 MiB/s | 513.9 KiB |  00m00s
[ 30/185] Installing xz-libs-1:5.8.1-4. 100% | 213.8 MiB/s | 218.9 KiB |  00m00s
[ 31/185] Installing libuuid-0:2.41.3-8 100% |   0.0   B/s |  38.2 KiB |  00m00s
[ 32/185] Installing gmp-1:6.3.0-4.fc44 100% | 399.2 MiB/s | 817.5 KiB |  00m00s
[ 33/185] Installing popt-0:1.19-9.fc43 100% |  68.1 MiB/s | 139.4 KiB |  00m00s
[ 34/185] Installing libzstd-0:1.5.7-3. 100% | 306.5 MiB/s | 941.6 KiB |  00m00s
[ 35/185] Installing elfutils-libelf-0: 100% | 373.7 MiB/s |   1.1 MiB |  00m00s
[ 36/185] Installing npth-0:1.8-3.fc43. 100% |   0.0   B/s |  50.7 KiB |  00m00s
[ 37/185] Installing libblkid-0:2.41.3- 100% | 257.2 MiB/s | 263.4 KiB |  00m00s
[ 38/185] Installing systemd-libs-0:259 100% | 334.3 MiB/s |   2.3 MiB |  00m00s
[ 39/185] Installing libxcrypt-0:4.5.2- 100% | 281.3 MiB/s | 288.0 KiB |  00m00s
[ 40/185] Installing libsepol-0:3.9-2.f 100% | 401.8 MiB/s | 822.9 KiB |  00m00s
[ 41/185] Installing sqlite-libs-0:3.51 100% | 383.0 MiB/s |   1.5 MiB |  00m00s
[ 42/185] Installing gnupg2-gpgconf-0:2 100% |  20.5 MiB/s | 252.0 KiB |  00m00s
[ 43/185] Installing libattr-0:2.5.2-6. 100% |   0.0   B/s |  25.4 KiB |  00m00s
[ 44/185] Installing libacl-0:2.3.2-4.f 100% |   0.0   B/s |  36.6 KiB |  00m00s
[ 45/185] Installing pcre2-0:10.47-1.fc 100% | 343.8 MiB/s | 704.1 KiB |  00m00s
[ 46/185] Installing libselinux-0:3.9-5 100% | 189.8 MiB/s | 194.4 KiB |  00m00s
[ 47/185] Installing grep-0:3.12-2.fc43 100% |  66.8 MiB/s |   1.0 MiB |  00m00s
[ 48/185] Installing sed-0:4.9-6.fc44.x 100% |  60.4 MiB/s | 865.5 KiB |  00m00s
[ 49/185] Installing findutils-1:4.10.0 100% | 109.3 MiB/s |   1.9 MiB |  00m00s
[ 50/185] Installing libtasn1-0:4.20.0- 100% | 173.9 MiB/s | 178.1 KiB |  00m00s
[ 51/185] Installing libunistring-0:1.1 100% | 345.3 MiB/s |   1.7 MiB |  00m00s
[ 52/185] Installing libidn2-0:2.3.8-2. 100% |  54.6 MiB/s | 558.7 KiB |  00m00s
[ 53/185] Installing crypto-policies-0: 100% |  30.8 MiB/s | 157.7 KiB |  00m00s
[ 54/185] Installing xz-1:5.8.1-4.fc44. 100% |  78.3 MiB/s |   1.3 MiB |  00m00s
[ 55/185] Installing libmount-0:2.41.3- 100% | 364.8 MiB/s | 373.6 KiB |  00m00s
[ 56/185] Installing gnupg2-verify-0:2. 100% |  28.5 MiB/s | 349.9 KiB |  00m00s
[ 57/185] Installing dwz-0:0.16-2.fc43. 100% |  23.5 MiB/s | 288.5 KiB |  00m00s
[ 58/185] Installing mpfr-0:4.2.2-2.fc4 100% | 271.6 MiB/s | 834.4 KiB |  00m00s
[ 59/185] Installing gawk-0:5.3.2-2.fc4 100% | 106.8 MiB/s |   1.8 MiB |  00m00s
[ 60/185] Installing libksba-0:1.6.7-4. 100% | 391.7 MiB/s | 401.1 KiB |  00m00s
[ 61/185] Installing unzip-0:6.0-68.fc4 100% |  32.1 MiB/s | 393.8 KiB |  00m00s
[ 62/185] Installing file-libs-0:5.46-8 100% | 658.7 MiB/s |  11.9 MiB |  00m00s
[ 63/185] Installing file-0:5.46-8.fc44 100% |   8.3 MiB/s | 101.7 KiB |  00m00s
[ 64/185] Installing diffutils-0:3.12-3 100% |  97.6 MiB/s |   1.6 MiB |  00m00s
[ 65/185] Installing libcap-ng-0:0.8.5- 100% |  69.2 MiB/s |  70.8 KiB |  00m00s
[ 66/185] Installing audit-libs-0:4.1.2 100% | 372.6 MiB/s | 381.5 KiB |  00m00s
[ 67/185] Installing libsemanage-0:3.9- 100% | 303.0 MiB/s | 310.2 KiB |  00m00s
[ 68/185] Installing libsmartcols-0:2.4 100% | 177.1 MiB/s | 181.4 KiB |  00m00s
[ 69/185] Installing libeconf-0:0.7.9-2 100% |  65.0 MiB/s |  66.5 KiB |  00m00s
[ 70/185] Installing pam-libs-0:1.7.1-3 100% | 126.0 MiB/s | 129.0 KiB |  00m00s
[ 71/185] Installing libcap-0:2.77-1.fc 100% |  17.4 MiB/s | 214.3 KiB |  00m00s
[ 72/185] Installing alternatives-0:1.3 100% |   5.7 MiB/s |  63.8 KiB |  00m00s
[ 73/185] Installing lua-libs-0:5.4.8-4 100% | 276.7 MiB/s | 283.3 KiB |  00m00s
[ 74/185] Installing json-c-0:0.18-7.fc 100% |  82.0 MiB/s |  84.0 KiB |  00m00s
[ 75/185] Installing libffi-0:3.5.2-1.f 100% |  83.2 MiB/s |  85.2 KiB |  00m00s
[ 76/185] Installing p11-kit-0:0.25.8-1 100% | 120.5 MiB/s |   2.3 MiB |  00m00s
[ 77/185] Installing p11-kit-trust-0:0. 100% |  21.9 MiB/s | 448.3 KiB |  00m00s
[ 78/185] Installing ngtcp2-0:1.18.0-1. 100% | 308.4 MiB/s | 315.8 KiB |  00m00s
[ 79/185] Installing openssl-libs-1:3.5 100% | 371.3 MiB/s |   8.9 MiB |  00m00s
[ 80/185] Installing coreutils-0:9.9-1. 100% | 166.3 MiB/s |   5.5 MiB |  00m00s
[ 81/185] Installing ca-certificates-0: 100% |   2.1 MiB/s |   2.5 MiB |  00m01s
[ 82/185] Installing gzip-0:1.14-1.fc44 100% |  28.1 MiB/s | 403.3 KiB |  00m00s
[ 83/185] Installing rpm-sequoia-0:1.10 100% | 352.3 MiB/s |   2.5 MiB |  00m00s
[ 84/185] Installing libfsverity-0:1.6- 100% |   0.0   B/s |  29.5 KiB |  00m00s
[ 85/185] Installing libevent-0:2.1.12- 100% | 288.7 MiB/s | 886.8 KiB |  00m00s
[ 86/185] Installing ngtcp2-crypto-ossl 100% |  51.3 MiB/s |  52.6 KiB |  00m00s
[ 87/185] Installing util-linux-core-0: 100% |  86.8 MiB/s |   1.5 MiB |  00m00s
[ 88/185] Installing zip-0:3.0-44.fc43. 100% |  52.5 MiB/s | 698.4 KiB |  00m00s
[ 89/185] Installing gnupg2-keyboxd-0:2 100% |  28.3 MiB/s | 202.7 KiB |  00m00s
[ 90/185] Installing libpsl-0:0.21.5-6. 100% |  75.7 MiB/s |  77.5 KiB |  00m00s
[ 91/185] Installing tar-2:1.35-6.fc43. 100% | 140.9 MiB/s |   3.0 MiB |  00m00s
[ 92/185] Installing linkdupes-0:0.7.2- 100% |  58.6 MiB/s | 840.1 KiB |  00m00s
[ 93/185] Installing libselinux-utils-0 100% |  24.3 MiB/s | 323.4 KiB |  00m00s
[ 94/185] Installing liblastlog2-0:2.41 100% |   5.0 MiB/s |  35.8 KiB |  00m00s
[ 95/185] Installing systemd-standalone 100% |  22.1 MiB/s | 294.2 KiB |  00m00s
[ 96/185] Installing libusb1-0:1.0.29-4 100% |  21.1 MiB/s | 172.9 KiB |  00m00s
>>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64
>>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64
>>> Scriptlet output:
>>> Creating group 'tss' with GID 59.
>>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59.
>>> 
[ 97/185] Installing tpm2-tss-0:4.1.3-8 100% | 262.0 MiB/s |   1.6 MiB |  00m00s
[ 98/185] Installing ima-evm-utils-libs 100% |  60.5 MiB/s |  62.0 KiB |  00m00s
[ 99/185] Installing gnupg2-gpg-agent-0 100% |  33.0 MiB/s | 675.4 KiB |  00m00s
[100/185] Installing libfdisk-0:2.41.3- 100% | 186.2 MiB/s | 381.3 KiB |  00m00s
[101/185] Installing util-linux-0:2.41. 100% | 101.8 MiB/s |   3.6 MiB |  00m00s
[102/185] Installing policycoreutils-0: 100% |  29.0 MiB/s | 711.8 KiB |  00m00s
[103/185] Installing selinux-policy-0:4 100% |   1.8 MiB/s |  33.6 KiB |  00m00s
[104/185] Installing selinux-policy-tar 100% | 188.8 MiB/s |  14.9 MiB |  00m00s
[105/185] Installing nettle-0:3.10.1-2. 100% | 193.8 MiB/s | 793.7 KiB |  00m00s
[106/185] Installing gnutls-0:3.8.11-6. 100% | 364.9 MiB/s |   3.6 MiB |  00m00s
[107/185] Installing libxml2-0:2.12.10- 100% |  94.7 MiB/s |   1.7 MiB |  00m00s
[108/185] Installing bzip2-0:1.0.8-21.f 100% |   8.1 MiB/s |  99.8 KiB |  00m00s
[109/185] Installing add-determinism-0: 100% | 135.6 MiB/s |   2.3 MiB |  00m00s
[110/185] Installing build-reproducibil 100% |   0.0   B/s |   1.5 KiB |  00m00s
[111/185] Installing cpio-0:2.15-6.fc43 100% |  73.3 MiB/s |   1.1 MiB |  00m00s
[112/185] Installing libpkgconf-0:2.3.0 100% |   0.0   B/s |  79.2 KiB |  00m00s
[113/185] Installing pkgconf-0:2.3.0-3. 100% |   7.4 MiB/s |  91.0 KiB |  00m00s
[114/185] Installing ed-0:1.22.3-1.fc44 100% |  12.3 MiB/s | 151.2 KiB |  00m00s
[115/185] Installing patch-0:2.8-3.fc44 100% |  18.6 MiB/s | 228.2 KiB |  00m00s
[116/185] Installing libatomic-0:16.0.0 100% |   0.0   B/s |  37.5 KiB |  00m00s
[117/185] Installing libstdc++-0:16.0.0 100% | 364.8 MiB/s |   2.9 MiB |  00m00s
[118/185] Installing rpm-libs-0:6.0.1-1 100% | 304.5 MiB/s | 935.3 KiB |  00m00s
[119/185] Installing zstd-0:1.5.7-3.fc4 100% |  38.3 MiB/s | 509.8 KiB |  00m00s
[120/185] Installing lz4-libs-0:1.10.0- 100% | 158.6 MiB/s | 162.5 KiB |  00m00s
[121/185] Installing libarchive-0:3.8.4 100% | 311.6 MiB/s | 957.2 KiB |  00m00s
[122/185] Installing jansson-0:2.14-3.f 100% |  88.3 MiB/s |  90.5 KiB |  00m00s
[123/185] Installing libgomp-0:16.0.0-0 100% | 279.4 MiB/s | 572.3 KiB |  00m00s
[124/185] Installing libtool-ltdl-0:2.5 100% |   0.0   B/s |  71.1 KiB |  00m00s
[125/185] Installing gdbm-libs-1:1.23-1 100% | 128.5 MiB/s | 131.6 KiB |  00m00s
[126/185] Installing cyrus-sasl-lib-0:2 100% | 135.3 MiB/s |   2.3 MiB |  00m00s
[127/185] Installing openldap-0:2.6.10- 100% | 216.0 MiB/s | 663.6 KiB |  00m00s
[128/185] Installing gnupg2-dirmngr-0:2 100% |  30.3 MiB/s | 621.1 KiB |  00m00s
[129/185] Installing gnupg2-0:2.4.8-4.f 100% | 225.9 MiB/s |   6.6 MiB |  00m00s
[130/185] Installing rpm-sign-libs-0:6. 100% |   0.0   B/s |  40.6 KiB |  00m00s
[131/185] Installing gpgverify-0:2.2-3. 100% |   0.0   B/s |   9.4 KiB |  00m00s
[132/185] Installing xxhash-libs-0:0.8. 100% |  89.4 MiB/s |  91.6 KiB |  00m00s
[133/185] Installing libbrotli-0:1.2.0- 100% | 282.4 MiB/s | 867.7 KiB |  00m00s
[134/185] Installing libnghttp2-0:1.68. 100% | 159.5 MiB/s | 163.4 KiB |  00m00s
[135/185] Installing libnghttp3-0:1.14. 100% | 152.9 MiB/s | 156.6 KiB |  00m00s
[136/185] Installing keyutils-libs-0:1. 100% |  54.4 MiB/s |  55.7 KiB |  00m00s
[137/185] Installing libcom_err-0:1.47. 100% |   0.0   B/s |  64.2 KiB |  00m00s
[138/185] Installing libverto-0:0.3.2-1 100% |  26.6 MiB/s |  27.2 KiB |  00m00s
[139/185] Installing krb5-libs-0:1.21.3 100% | 328.5 MiB/s |   2.3 MiB |  00m00s
[140/185] Installing libssh-0:0.11.3-1. 100% | 277.9 MiB/s | 569.2 KiB |  00m00s
[141/185] Installing libcurl-0:8.18.0~r 100% | 320.9 MiB/s | 985.8 KiB |  00m00s
[142/185] Installing curl-0:8.18.0~rc2- 100% |  21.0 MiB/s | 474.1 KiB |  00m00s
[143/185] Installing rpm-0:6.0.1-1.fc44 100% |  82.3 MiB/s |   2.6 MiB |  00m00s
[144/185] Installing cmake-srpm-macros- 100% |   0.0   B/s | 804.0   B |  00m00s
[145/185] Installing efi-srpm-macros-0: 100% |   0.0   B/s |  41.2 KiB |  00m00s
[146/185] Installing java-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[147/185] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[148/185] Installing tree-sitter-srpm-m 100% |   0.0   B/s |   9.3 KiB |  00m00s
[149/185] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[150/185] Installing filesystem-srpm-ma 100% |   0.0   B/s |  38.9 KiB |  00m00s
[151/185] Installing elfutils-default-y 100% | 510.7 KiB/s |   2.0 KiB |  00m00s
[152/185] Installing elfutils-libs-0:0. 100% | 224.4 MiB/s | 689.3 KiB |  00m00s
[153/185] Installing elfutils-debuginfo 100% |   6.5 MiB/s |  86.3 KiB |  00m00s
[154/185] Installing binutils-0:2.45.50 100% | 322.2 MiB/s |  27.1 MiB |  00m00s
[155/185] Installing elfutils-0:0.194-2 100% | 154.2 MiB/s |   2.9 MiB |  00m00s
[156/185] Installing gdb-minimal-0:16.3 100% | 288.2 MiB/s |  13.3 MiB |  00m00s
[157/185] Installing debugedit-0:5.2-3. 100% |  16.3 MiB/s | 217.3 KiB |  00m00s
[158/185] Installing rpm-build-libs-0:6 100% | 259.0 MiB/s | 265.2 KiB |  00m00s
[159/185] Installing pkgconf-m4-0:2.3.0 100% |   0.0   B/s |  14.8 KiB |  00m00s
[160/185] Installing pkgconf-pkg-config 100% | 161.2 KiB/s |   1.8 KiB |  00m00s
[161/185] Installing rust-srpm-macros-0 100% |   0.0   B/s |   6.4 KiB |  00m00s
[162/185] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 740.0   B |  00m00s
[163/185] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[164/185] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[165/185] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[166/185] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[167/185] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.1 KiB |  00m00s
[168/185] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[169/185] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[170/185] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[171/185] Installing gap-srpm-macros-0: 100% |   0.0   B/s |   2.7 KiB |  00m00s
[172/185] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[173/185] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[174/185] Installing rpm-build-0:6.0.1- 100% |  22.3 MiB/s | 296.6 KiB |  00m00s
[175/185] Installing pyproject-srpm-mac 100% |   0.0   B/s |   2.5 KiB |  00m00s
[176/185] Installing redhat-rpm-config- 100% |  92.7 MiB/s | 189.9 KiB |  00m00s
[177/185] Installing forge-srpm-macros- 100% |   0.0   B/s |  40.3 KiB |  00m00s
[178/185] Installing fonts-srpm-macros- 100% |   0.0   B/s |  57.0 KiB |  00m00s
[179/185] Installing go-srpm-macros-0:3 100% |   0.0   B/s |  63.0 KiB |  00m00s
[180/185] Installing R-srpm-macros-0:1. 100% |   0.0   B/s |   4.0 KiB |  00m00s
[181/185] Installing python-srpm-macros 100% |  12.9 MiB/s |  52.9 KiB |  00m00s
[182/185] Installing rpm-plugin-selinux 100% |   0.0   B/s |  13.0 KiB |  00m00s
[183/185] Installing which-0:2.23-3.fc4 100% |   6.4 MiB/s |  85.7 KiB |  00m00s
[184/185] Installing shadow-utils-2:4.1 100% | 141.9 MiB/s |   4.0 MiB |  00m00s
[185/185] Installing info-0:7.2-7.fc44. 100% |  55.0 KiB/s | 358.3 KiB |  00m07s
Warning: skipped OpenPGP checks for 178 packages from repositories: copr_base, https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: R-srpm-macros-1.3.0-1.fc44.noarch
add-determinism-0.7.2-2.fc44.x86_64
alternatives-1.33-3.fc44.x86_64
ansible-srpm-macros-1-18.1.fc43.noarch
audit-libs-4.1.2-2.fc44.x86_64
bash-5.3.0-2.fc43.x86_64
binutils-2.45.50-9.fc44.x86_64
build-reproducibility-srpm-macros-0.7.2-2.fc44.noarch
bzip2-1.0.8-21.fc43.x86_64
bzip2-libs-1.0.8-21.fc43.x86_64
ca-certificates-2025.2.80_v9.0.304-2.fc44.noarch
cmake-srpm-macros-3.31.10-3.fc44.noarch
coreutils-9.9-1.fc44.x86_64
coreutils-common-9.9-1.fc44.x86_64
cpio-2.15-6.fc43.x86_64
crypto-policies-20251128-1.git19878fe.fc44.noarch
curl-8.18.0~rc2-1.fc44.x86_64
cyrus-sasl-lib-2.1.28-33.fc44.x86_64
debugedit-5.2-3.fc44.x86_64
diffutils-3.12-3.fc43.x86_64
dwz-0.16-2.fc43.x86_64
ed-1.22.3-1.fc44.x86_64
efi-srpm-macros-6-5.fc44.noarch
elfutils-0.194-2.fc44.x86_64
elfutils-debuginfod-client-0.194-2.fc44.x86_64
elfutils-default-yama-scope-0.194-2.fc44.noarch
elfutils-libelf-0.194-2.fc44.x86_64
elfutils-libs-0.194-2.fc44.x86_64
fedora-gpg-keys-44-0.1.noarch
fedora-release-44-0.10.noarch
fedora-release-common-44-0.10.noarch
fedora-release-identity-basic-44-0.10.noarch
fedora-repos-44-0.1.noarch
fedora-repos-rawhide-44-0.1.noarch
file-5.46-8.fc44.x86_64
file-libs-5.46-8.fc44.x86_64
filesystem-3.18-50.fc43.x86_64
filesystem-srpm-macros-3.18-50.fc43.noarch
findutils-4.10.0-6.fc43.x86_64
fonts-srpm-macros-5.0.0-1.fc44.noarch
forge-srpm-macros-0.4.0-3.fc43.noarch
fpc-srpm-macros-1.3-15.fc43.noarch
gap-srpm-macros-2-1.fc44.noarch
gawk-5.3.2-2.fc43.x86_64
gdb-minimal-16.3-6.fc44.x86_64
gdbm-libs-1.23-10.fc43.x86_64
ghc-srpm-macros-1.9.2-3.fc43.noarch
glibc-2.42.9000-17.fc44.x86_64
glibc-common-2.42.9000-17.fc44.x86_64
glibc-gconv-extra-2.42.9000-17.fc44.x86_64
glibc-minimal-langpack-2.42.9000-17.fc44.x86_64
gmp-6.3.0-4.fc44.x86_64
gnat-srpm-macros-6-8.fc43.noarch
gnulib-l10n-20241231-1.fc44.noarch
gnupg2-2.4.8-4.fc43.x86_64
gnupg2-dirmngr-2.4.8-4.fc43.x86_64
gnupg2-gpg-agent-2.4.8-4.fc43.x86_64
gnupg2-gpgconf-2.4.8-4.fc43.x86_64
gnupg2-keyboxd-2.4.8-4.fc43.x86_64
gnupg2-verify-2.4.8-4.fc43.x86_64
gnutls-3.8.11-6.fc44.x86_64
go-srpm-macros-3.8.0-1.fc44.noarch
gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b
gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98
gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf
gpgverify-2.2-3.fc43.noarch
grep-3.12-2.fc43.x86_64
gzip-1.14-1.fc44.x86_64
ima-evm-utils-libs-1.6.2-7.fc44.x86_64
info-7.2-7.fc44.x86_64
jansson-2.14-3.fc43.x86_64
java-srpm-macros-1-7.fc43.noarch
json-c-0.18-7.fc43.x86_64
kernel-srpm-macros-1.0-27.fc43.noarch
keyutils-libs-1.6.3-6.fc43.x86_64
krb5-libs-1.21.3-10.fc44.x86_64
libacl-2.3.2-4.fc44.x86_64
libarchive-3.8.4-1.fc44.x86_64
libassuan-2.5.7-4.fc43.x86_64
libatomic-16.0.0-0.3.fc44.x86_64
libattr-2.5.2-6.fc43.x86_64
libblkid-2.41.3-8.fc44.x86_64
libbrotli-1.2.0-1.fc44.x86_64
libcap-2.77-1.fc44.x86_64
libcap-ng-0.8.5-8.fc44.x86_64
libcom_err-1.47.3-3.fc44.x86_64
libcurl-8.18.0~rc2-1.fc44.x86_64
libeconf-0.7.9-2.fc43.x86_64
libevent-2.1.12-16.fc43.x86_64
libfdisk-2.41.3-8.fc44.x86_64
libffi-3.5.2-1.fc44.x86_64
libfsverity-1.6-3.fc43.x86_64
libgcc-16.0.0-0.3.fc44.x86_64
libgcrypt-1.11.2-1.fc44.x86_64
libgomp-16.0.0-0.3.fc44.x86_64
libgpg-error-1.58-1.fc44.x86_64
libidn2-2.3.8-2.fc43.x86_64
libksba-1.6.7-4.fc43.x86_64
liblastlog2-2.41.3-8.fc44.x86_64
libmount-2.41.3-8.fc44.x86_64
libnghttp2-1.68.0-2.fc44.x86_64
libnghttp3-1.14.0-1.fc44.x86_64
libpkgconf-2.3.0-3.fc43.x86_64
libpsl-0.21.5-6.fc43.x86_64
libselinux-3.9-5.fc44.x86_64
libselinux-utils-3.9-5.fc44.x86_64
libsemanage-3.9-4.fc44.x86_64
libsepol-3.9-2.fc43.x86_64
libsmartcols-2.41.3-8.fc44.x86_64
libssh-0.11.3-1.fc44.x86_64
libssh-config-0.11.3-1.fc44.noarch
libstdc++-16.0.0-0.3.fc44.x86_64
libtasn1-4.20.0-2.fc43.x86_64
libtool-ltdl-2.5.4-9.fc44.x86_64
libunistring-1.1-10.fc43.x86_64
libusb1-1.0.29-4.fc44.x86_64
libuuid-2.41.3-8.fc44.x86_64
libverto-0.3.2-11.fc43.x86_64
libxcrypt-4.5.2-2.fc44.x86_64
libxml2-2.12.10-5.fc44.x86_64
libzstd-1.5.7-3.fc44.x86_64
linkdupes-0.7.2-2.fc44.x86_64
lua-libs-5.4.8-4.fc44.x86_64
lua-srpm-macros-1-16.fc43.noarch
lz4-libs-1.10.0-3.fc43.x86_64
mpfr-4.2.2-2.fc43.x86_64
ncurses-base-6.5-8.20250614.fc44.noarch
ncurses-libs-6.5-8.20250614.fc44.x86_64
nettle-3.10.1-2.fc43.x86_64
ngtcp2-1.18.0-1.fc44.x86_64
ngtcp2-crypto-ossl-1.18.0-1.fc44.x86_64
npth-1.8-3.fc43.x86_64
ocaml-srpm-macros-11-2.fc43.noarch
openblas-srpm-macros-2-20.fc43.noarch
openldap-2.6.10-4.fc44.x86_64
openssl-libs-3.5.4-1.fc44.x86_64
p11-kit-0.25.8-1.fc44.x86_64
p11-kit-trust-0.25.8-1.fc44.x86_64
package-notes-srpm-macros-0.5-14.fc43.noarch
pam-libs-1.7.1-3.fc43.x86_64
patch-2.8-3.fc44.x86_64
pcre2-10.47-1.fc44.x86_64
pcre2-syntax-10.47-1.fc44.noarch
perl-srpm-macros-1-60.fc43.noarch
pkgconf-2.3.0-3.fc43.x86_64
pkgconf-m4-2.3.0-3.fc43.noarch
pkgconf-pkg-config-2.3.0-3.fc43.x86_64
policycoreutils-3.9-5.fc44.x86_64
popt-1.19-9.fc43.x86_64
publicsuffix-list-dafsa-20250616-2.fc43.noarch
pyproject-srpm-macros-1.18.6-1.fc44.noarch
python-srpm-macros-3.14-9.fc44.noarch
qt5-srpm-macros-5.15.18-1.fc44.noarch
qt6-srpm-macros-6.10.1-1.fc44.noarch
readline-8.3-2.fc43.x86_64
redhat-rpm-config-343-19.fc44.noarch
rpm-6.0.1-1.fc44.x86_64
rpm-build-6.0.1-1.fc44.x86_64
rpm-build-libs-6.0.1-1.fc44.x86_64
rpm-libs-6.0.1-1.fc44.x86_64
rpm-plugin-selinux-6.0.1-1.fc44.x86_64
rpm-sequoia-1.10.0-1.fc44.x86_64
rpm-sign-libs-6.0.1-1.fc44.x86_64
rust-srpm-macros-28.4-1.fc44.noarch
sed-4.9-6.fc44.x86_64
selinux-policy-42.19-1.fc44.noarch
selinux-policy-targeted-42.19-1.fc44.noarch
setup-2.15.0-27.fc44.noarch
shadow-utils-4.18.0-7.fc44.x86_64
sqlite-libs-3.51.0-1.fc44.x86_64
systemd-libs-259-1.fc44.x86_64
systemd-standalone-sysusers-259-1.fc44.x86_64
tar-1.35-6.fc43.x86_64
tpm2-tss-4.1.3-8.fc43.x86_64
tree-sitter-srpm-macros-0.4.2-1.fc43.noarch
unzip-6.0-68.fc44.x86_64
util-linux-2.41.3-8.fc44.x86_64
util-linux-core-2.41.3-8.fc44.x86_64
which-2.23-3.fc43.x86_64
xxhash-libs-0.8.3-3.fc43.x86_64
xz-5.8.1-4.fc44.x86_64
xz-libs-5.8.1-4.fc44.x86_64
zig-srpm-macros-1-5.fc43.noarch
zip-3.0-44.fc43.x86_64
zlib-ng-compat-2.3.2-2.fc44.x86_64
zstd-1.5.7-3.fc44.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1753228800
Wrote: /builddir/build/SRPMS/autodocksuite-4.2.6-25.fc44.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1766654750.620361/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-n3hsq02x/autodocksuite/autodocksuite.spec) Config(child) 0 minutes 24 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/autodocksuite-4.2.6-25.fc44.src.rpm)  Config(fedora-rawhide-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1766654750.620361/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1766654750.620361/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1766654750.620361/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-1.fc44.x86_64
  rpm-sequoia-1.10.0-1.fc44.x86_64
  dnf5-5.3.0.0-3.fc44.x86_64
  dnf5-plugins-5.3.0.0-3.fc44.x86_64
Finish: chroot init
Start: build phase for autodocksuite-4.2.6-25.fc44.src.rpm
Start: build setup for autodocksuite-4.2.6-25.fc44.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1753228800
Wrote: /builddir/build/SRPMS/autodocksuite-4.2.6-25.fc44.src.rpm
Updating and loading repositories:
 Additional repo https_kojipkgs_fedorap 100% |  71.3 KiB/s |   3.5 KiB |  00m00s
 Copr repository                        100% |  31.2 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% | 137.3 KiB/s |  28.6 KiB |  00m00s
Repositories loaded.
Package             Arch   Version                Repository                                                                        Size
Installing:
 gcc-c++            x86_64 0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  48.3 MiB
 make               x86_64 1:4.4.1-11.fc43        https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.8 MiB
 tcsh               x86_64 0:6.24.14-4.fc43       https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   1.2 MiB
Installing dependencies:
 annobin-docs       noarch 0:13.04-3.fc44         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  99.2 KiB
 annobin-plugin-gcc x86_64 0:13.04-3.fc44         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 695.6 KiB
 cpp                x86_64 0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  43.6 MiB
 gcc                x86_64 0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 126.0 MiB
 gcc-plugin-annobin x86_64 0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  57.2 KiB
 glibc-devel        x86_64 0:2.42.9000-17.fc44    fedora                                                                         2.3 MiB
 kernel-headers     x86_64 0:6.19.0-0.rc2.20.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch   6.9 MiB
 libmpc             x86_64 0:1.3.1-8.fc43         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 160.6 KiB
 libstdc++-devel    x86_64 0:16.0.0-0.3.fc44      https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  38.7 MiB
 libxcrypt-devel    x86_64 0:4.5.2-2.fc44         https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch  31.0 KiB

Transaction Summary:
 Installing:        13 packages

Total size of inbound packages is 85 MiB. Need to download 463 KiB.
After this operation, 270 MiB extra will be used (install 270 MiB, remove 0 B).
[ 1/13] gcc-c++-0:16.0.0-0.3.fc44.x86_6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 2/13] make-1:4.4.1-11.fc43.x86_64     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 3/13] gcc-0:16.0.0-0.3.fc44.x86_64    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 4/13] libmpc-0:1.3.1-8.fc43.x86_64    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 5/13] libstdc++-devel-0:16.0.0-0.3.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 6/13] cpp-0:16.0.0-0.3.fc44.x86_64    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 7/13] glibc-devel-0:2.42.9000-17.fc44 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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>>> Already downloaded
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--------------------------------------------------------------------------------
[13/13] Total                           100% |   1.9 MiB/s | 463.2 KiB |  00m00s
Running transaction
[ 1/15] Verify package files            100% |  41.0   B/s |  13.0   B |  00m00s
[ 2/15] Prepare transaction             100% | 541.0   B/s |  13.0   B |  00m00s
[ 3/15] Installing libmpc-0:1.3.1-8.fc4 100% | 158.3 MiB/s | 162.1 KiB |  00m00s
[ 4/15] Installing cpp-0:16.0.0-0.3.fc4 100% | 343.7 MiB/s |  43.7 MiB |  00m00s
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[ 6/15] Installing kernel-headers-0:6.1 100% | 206.7 MiB/s |   7.0 MiB |  00m00s
[ 7/15] Installing glibc-devel-0:2.42.9 100% | 183.5 MiB/s |   2.4 MiB |  00m00s
[ 8/15] Installing libxcrypt-devel-0:4. 100% |  16.3 MiB/s |  33.3 KiB |  00m00s
[ 9/15] Installing libstdc++-devel-0:16 100% | 468.0 MiB/s |  38.8 MiB |  00m00s
[10/15] Installing make-1:4.4.1-11.fc43 100% | 100.0 MiB/s |   1.8 MiB |  00m00s
[11/15] Installing gcc-0:16.0.0-0.3.fc4 100% | 401.5 MiB/s | 126.1 MiB |  00m00s
[12/15] Installing gcc-c++-0:16.0.0-0.3 100% | 360.7 MiB/s |  48.3 MiB |  00m00s
[13/15] Installing annobin-plugin-gcc-0 100% |  48.6 MiB/s | 697.2 KiB |  00m00s
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[15/15] Installing tcsh-0:6.24.14-4.fc4 100% |  10.8 MiB/s |   1.2 MiB |  00m00s
Warning: skipped OpenPGP checks for 12 packages from repository: https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1753228800
Wrote: /builddir/build/SRPMS/autodocksuite-4.2.6-25.fc44.src.rpm
Updating and loading repositories:
 Additional repo https_kojipkgs_fedorap 100% |  71.3 KiB/s |   3.5 KiB |  00m00s
 Copr repository                        100% |  31.2 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% | 234.1 KiB/s |  28.6 KiB |  00m00s
Repositories loaded.
Package "tcsh-6.24.14-4.fc43.x86_64" is already installed.
Package "gcc-c++-16.0.0-0.3.fc44.x86_64" is already installed.
Package "make-1:4.4.1-11.fc43.x86_64" is already installed.

Nothing to do.
Finish: build setup for autodocksuite-4.2.6-25.fc44.src.rpm
Start: rpmbuild autodocksuite-4.2.6-25.fc44.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1753228800
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.KveJDr
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.lL1t25
+ umask 022
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ rm -rf src
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/autodocksuite-4.2.6-src.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd src
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.y83MAU
+ umask 022
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
~/build/BUILD/autodocksuite-4.2.6-build/src/autodock ~/build/BUILD/autodocksuite-4.2.6-build/src
+ cd src
+ pushd autodock
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2014-07-19 01:58:48.000000000 +0000
+++ ./configure	2025-12-25 09:26:26.054084603 +0000
@@ -1874,7 +1874,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
+ ./configure --build=x86_64-redhat-linux --host=x86_64-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/bin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for gawk... (cached) gawk
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... none
checking for x86_64-redhat-linux-ranlib... no
checking for ranlib... ranlib
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking for x86_64-redhat-linux-gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... none
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... no
checking for _Bool... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for gethostname... yes
checking for getpid... yes
checking for GetProcessId... no
checking for fchmod... yes
checking for setlinebuf... yes
checking for sysconf... yes
checking for times... yes
checking for getrusage... yes
checking for pow... no
checking for sqrt... no
checking for strncasecmp... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) none
checking for g++ option to support OpenMP... -fopenmp
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
+ make -j4
rm -f default_parameters.h
csh ./paramdat2h.csh ./AD4_parameters.dat ./AD4.1_bound.dat > default_parameters.h
make  all-am
make[1]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-main.o `test -f 'main.cc' || echo './'`main.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-alea.o `test -f 'alea.cc' || echo './'`alea.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-analysis.o `test -f 'analysis.cc' || echo './'`analysis.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-atom_parameter_manager.o `test -f 'atom_parameter_manager.cc' || echo './'`atom_parameter_manager.cc
main.cc:3490: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
 3490 | #pragma omp parallel for \
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from analysis.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
analysis.cc: In function ‘void analysis(int, int*, GroupEnergy*, int, const char (*)[128], const Real*, const Real*, const Real*, Boole, const Real&, const Real (*)[3], const EnergyTables*, MapType*, const Real*, int, int, const NonbondParam*, int, int, State*, const char*, const Real*, Boole, Boole, const int (*)[2048], const int*, const Real (*)[3], const char*, const Real&, Boole, int, const int*, Boole, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Boole, Unbound_Model, Boole, int, int, FILE*)’:
analysis.cc:138:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  138 |     register int   i = 0;
      |                    ^
analysis.cc:139:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  139 |     register int   j = 0;
      |                    ^
analysis.cc:140:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  140 |     register int   k = 0;
      |                    ^
analysis.cc:141:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  141 |     register int   t = 0;
      |                    ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-banner.o `test -f 'banner.cc' || echo './'`banner.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-bestpdb.o `test -f 'bestpdb.cc' || echo './'`bestpdb.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from hybrids.h:40,
                 from main.cc:98:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
main.cc: In function ‘int main(int, const char**)’:
main.cc:480:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  480 | register int i = 0;
      |              ^
main.cc:481:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  481 | register int j = 0;
      |              ^
main.cc:482:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  482 | register int k = 0;
      |              ^
main.cc:484:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  484 | register int xyz = 0;
      |              ^~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-calculateEnergies.o `test -f 'calculateEnergies.cc' || echo './'`calculateEnergies.cc
bestpdb.cc: In function ‘void bestpdb(int, const int*, const int (*)[2000], const Real*, const Real (*)[2048][3], const char (*)[128], int, Boole, const Real*, int, FILE*)’:
bestpdb.cc:58:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   58 |     register int  i=0,
      |                   ^
bestpdb.cc:59:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   59 |                   j=0,
      |                   ^
bestpdb.cc:60:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   60 |                   k=0,
      |                   ^
bestpdb.cc:61:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |                   confnum=0;
      |                   ^~~~~~~
bestpdb.cc:123:62: warning: ‘%4d’ directive writing between 4 and 10 bytes into a region of size 9 [-Wformat-overflow=]
  123 |                     sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11],
      |                                                              ^~~
bestpdb.cc:123:53: note: directive argument in the range [1, 2147483647]
  123 |                     sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11],
      |                                                     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from bestpdb.cc:33:
In function ‘sprintf’,
    inlined from ‘bestpdb(int, int const*, int const (*) [2000], double const*, double const (*) [2048][3], char const (*) [128], int, int, double const*, int, _IO_FILE*)’ at bestpdb.cc:123:28:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 20 and 26 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-call_glss.o `test -f 'call_glss.cc' || echo './'`call_glss.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-call_ls.o `test -f 'call_ls.cc' || echo './'`call_ls.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-center_ligand.o `test -f 'center_ligand.cc' || echo './'`center_ligand.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from call_glss.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
call_glss.cc: In function ‘State call_glss(Global_Search*, Local_Search*, const State&, unsigned int, unsigned int, int, FILE*, const Output_pop_stats&, Molecule*, Eval*, Boole, Boole, Boole, const GridMapSetInfo*, const char*, int*)’:
call_glss.cc:259:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  259 |     register unsigned int i;
      |                           ^
call_glss.cc:260:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  260 |     register int j;
      |                  ^
In file included from eval.h:38,
                 from support.h:237,
                 from ls.h:40,
                 from call_ls.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
call_ls.cc: In function ‘Representation** cnv_state_to_rep(const State&)’:
call_ls.cc:50:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   50 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-changeState.o `test -f 'changeState.cc' || echo './'`changeState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-check_header_float.o `test -f 'check_header_float.cc' || echo './'`check_header_float.cc
In file included from changeState.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
changeState.cc: In function ‘State changeState(const State&, const Real&, const Real&, int, const Real (*)[8][2], const int*)’:
changeState.cc:46:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-check_header_int.o `test -f 'check_header_int.cc' || echo './'`check_header_int.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-check_header_line.o `test -f 'check_header_line.cc' || echo './'`check_header_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-cluster_analysis.o `test -f 'cluster_analysis.cc' || echo './'`cluster_analysis.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-clmode.o `test -f 'clmode.cc' || echo './'`clmode.cc
cluster_analysis.cc: In function ‘int cluster_analysis(const Real&, int (*)[2000], int*, const int*, int, int, const int*, const Real (*)[2048][3], const Real (*)[3], const Real*, Real (*)[2000], Boole, Boole, Real (*)[3], int, Real*, Boole, int)’:
cluster_analysis.cc:61:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |     register int compare = 0,
      |                  ^~~~~~~
cluster_analysis.cc:62:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |                  i = 0;
      |                  ^
main.cc:1250:89: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 313 [-Wformat-overflow=]
 1250 |                     prStr( error_message,"%s:         Edit the parameter library file \"%s\" and try again.\n", programname, FN_parameter_library );
      |                                                                                         ^~                                   ~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from /usr/include/c++/16/cstdio:47,
                 from /usr/include/c++/16/ext/string_conversions.h:47,
                 from /usr/include/c++/16/bits/basic_string.h:4465,
                 from /usr/include/c++/16/string:57,
                 from main.cc:71:
In function ‘sprintf’,
    inlined from ‘main’ at main.cc:1250:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 61 or more bytes (assuming 4156) into a destination of size 356
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
main.cc: In function ‘main’:
main.cc:2367:82: warning: ‘%s’ directive writing up to 511 bytes into a region of size 320 [-Wformat-overflow=]
 2367 |                     prStr( error_message,"%s: ERROR:  Unknown ligand atom type \"%s\"; add parameters for it to the parameter library first!\n", programname, param[i]);
      |                                                                                  ^~
In function ‘sprintf’,
    inlined from ‘main’ at main.cc:2367:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 94 or more bytes (assuming 605) into a destination of size 356
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-cnv_state_to_coords.o `test -f 'cnv_state_to_coords.cc' || echo './'`cnv_state_to_coords.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-com.o `test -f 'com.cc' || echo './'`com.cc
In file included from clmode.h:40,
                 from clmode.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
clmode.cc: In function ‘void clmode(int, const Real&, const char*, const clock_t&, const tms&, Boole, const char*, const Real (*)[3], const Real*, Boole, Boole, const char*, Boole, int, int, FILE*)’:
clmode.cc:62:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |     register int xyz = 0;
      |                  ^~~
clmode.cc:89:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |     register int i = 0;
      |                  ^
clmode.cc:90:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int j = 0;
      |                  ^
com.cc:238: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
  238 | #pragma omp critical
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from cnv_state_to_coords.cc:37:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
clmode.cc:210:28: warning: ‘__strncpy_chk’ output may be truncated copying 30 bytes from a string of length 255 [-Wstringop-truncation]
  210 |                     strncpy( atomstuff[atomCounter], line, (size_t)30 );
      |                            ^
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-conformation_sampler.o `test -f 'conformation_sampler.cc' || echo './'`conformation_sampler.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-dimLibrary.o `test -f 'dimLibrary.cc' || echo './'`dimLibrary.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-distdepdiel.o `test -f 'distdepdiel.cc' || echo './'`distdepdiel.cc
In file included from eval.h:38,
                 from support.h:237,
                 from conformation_sampler.h:29,
                 from conformation_sampler.cc:27:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from pso.h:4,
                 from dimLibrary.cc:6:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
conformation_sampler.cc: In constructor ‘ConformationSampler::ConformationSampler(const State&, int, Eval*, int, FILE*)’:
conformation_sampler.cc:99:10: warning: variable ‘base_q’ set but not used [-Wunused-but-set-variable=]
   99 |     Quat base_q = probe_point.readQuat();
      |          ^~~~~~
dimLibrary.cc: In function ‘void copyDimension(State*, const Position&)’:
dimLibrary.cc:17:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   17 |         register int i, j;
      |                      ^
dimLibrary.cc:17:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   17 |         register int i, j;
      |                         ^
dimLibrary.cc: In function ‘void copyState2Dimension(Position*, const State&)’:
dimLibrary.cc:34:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   34 |         register int i, j;
      |                      ^
dimLibrary.cc:34:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   34 |         register int i, j;
      |                         ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-stateLibrary.o `test -f 'stateLibrary.cc' || echo './'`stateLibrary.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-readfield.o `test -f 'readfield.cc' || echo './'`readfield.cc
In file included from stateLibrary.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
stateLibrary.cc: In function ‘void initialiseState(State*)’:
stateLibrary.cc:40:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   40 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘void copyState(State*, const State&)’:
stateLibrary.cc:61:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘void printState(FILE*, State, int)’:
stateLibrary.cc:90:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘int checkState(FILE*, const State*)’:
stateLibrary.cc:199:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  199 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘Molecule copyStateToMolecule(const State*, Molecule*)’:
stateLibrary.cc:251:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  251 |     register int i;
      |                  ^
readfield.cc: In function ‘void readfield(GridMapSetInfo*, char*, const clock_t&, const tms&, int, FILE*)’:
readfield.cc:49:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   49 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-readmap.o `test -f 'readmap.cc' || echo './'`readmap.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-readPDBQT.o `test -f 'readPDBQT.cc' || echo './'`readPDBQT.cc
readfield.cc:83:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   83 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:108:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  108 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:116:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  116 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:123:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  123 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-read_parameter_library.o `test -f 'read_parameter_library.cc' || echo './'`read_parameter_library.cc
readmap.cc: In function ‘Statistics readmap(char*, int, const clock_t&, const tms&, Boole, Boole*, int, const GridMapSetInfo*, MapType*, char, FILE*)’:
readmap.cc:82:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   82 |     register int xyz = 0;
      |                  ^~~
readmap.cc:83:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   83 |     register int i = 0;
      |                  ^
readmap.cc:84:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   84 |     register int j = 0;
      |                  ^
readmap.cc:85:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   85 |     register int k = 0;
      |                  ^
readPDBQT.cc: In function ‘Molecule readPDBQT(char*, int, int*, Real (*)[3], Real*, Boole*, int*, int*, char (*)[5], char*, char*, Boole, char (*)[128], int*, int*, Boole*, int*, int*, Real*, Real*, int*, int*, int (*)[2048], Real (*)[3], int*, int*, NonbondParam*, const clock_t&, const tms&, const char*, int*, int*, int, char (*)[256], int*, int, int, FILE*)’:
readPDBQT.cc:138:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  138 |         register int    i = 0;
      |                         ^
readPDBQT.cc:139:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  139 |         register int    j = 0;
      |                         ^
readPDBQT.cc:133:25: warning: variable ‘B_has_conect_records’ set but not used [-Wunused-but-set-variable=]
  133 |         Boole           B_has_conect_records = FALSE;
      |                         ^~~~~~~~~~~~~~~~~~~~
read_parameter_library.cc: In function ‘void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)’:
read_parameter_library.cc:207:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  207 |     register int counter = 0;
      |                  ^~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-eval.o `test -f 'eval.cc' || echo './'`eval.cc
readPDBQT.cc:370:308: warning: ‘ could not be found;
	check ...’ directive writing 238 bytes into a region of size between 195 and 212 [-Wformat-overflow=]
  370 |                     prStr(message, "%s: WARNING: the atom type (%s) of atom number %d could not be found;\n\tcheck that this atom type is listed after the \"ligand_types\" keyword in the DPF,\n\tand make sure to add a \"map\" keyword to the DPF for this atom type.\n\tNote that AutoDock will use the default atom type = 1, instead.\n\n", programname, this_parameter_entry.autogrid_type, natom+1);
      |                                                                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from readPDBQT.cc:33:
In function ‘sprintf’,
    inlined from ‘readPDBQT(char*, int, int*, double (*) [3], double*, int*, int*, int*, char (*) [5], char*, char*, int, char (*) [128], int*, int*, int*, int*, int*, double*, double*, int*, int*, int (*) [2048], double (*) [3], int*, int*, nonbond_param*, long const&, tms const&, char const*, int*, int*, int, char (*) [256], int*, int, int, _IO_FILE*)’ at readPDBQT.cc:370:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 283 or more bytes (assuming 300) into a destination of size 256
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-gencau.o `test -f 'gencau.cc' || echo './'`gencau.cc
In file included from eval.h:38,
                 from eval.cc:39:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
eval.cc: In function ‘void make_state_from_rep(const Representation* const*, State*, int, FILE*)’:
eval.cc:72:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   72 |    register int i;
      |                 ^
eval.cc: In member function ‘double Eval::eval(int)’:
eval.cc:135:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  135 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-getrms.o `test -f 'getrms.cc' || echo './'`getrms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-get_atom_type.o `test -f 'get_atom_type.cc' || echo './'`get_atom_type.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-getInitialState.o `test -f 'getInitialState.cc' || echo './'`getInitialState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-getpdbcrds.o `test -f 'getpdbcrds.cc' || echo './'`getpdbcrds.cc
getrms.cc: In function ‘Real getrms(const Real (*)[3], const Real (*)[3], Boole, Boole, int, const int*, Boole, int)’:
getrms.cc:48:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                  ^
getrms.cc:48:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                     ^
getrms.cc:48:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                        ^~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-gs.o `test -f 'gs.cc' || echo './'`gs.cc
get_atom_type.cc: In function ‘int get_atom_type(const char*)’:
get_atom_type.cc:53:9: warning: variable ‘bond_index’ set but not used [-Wunused-but-set-variable=]
   53 |     int bond_index = -1;
      |         ^~~~~~~~~~
In file included from getInitialState.h:31,
                 from getInitialState.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
getInitialState.cc: In function ‘void getInitialState(Real*, const Real&, State*, State*, State*, Boole, Boole, Boole, const Real*, const Real*, const Real*, Real (*)[3], const Real (*)[3], const char (*)[128], EnergyComponent*, const EnergyTables*, Boole, MapType*, int, int, int*, GroupEnergy*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], int, int, const Real&, int, const int*, Boole, const Real&, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Unbound_Model, int, FILE*)’:
getInitialState.cc:111:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  111 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-initautodock.o `test -f 'initautodock.cc' || echo './'`initautodock.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-input_state.o `test -f 'input_state.cc' || echo './'`input_state.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-investigate.o `test -f 'investigate.cc' || echo './'`investigate.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from gs.cc:42:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
gs.cc: In function ‘double worst_in_window(const double*, int, int, FILE*)’:
gs.cc:73:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   73 |    register int i;
      |                 ^
gs.cc: In function ‘double avg_in_window(const double*, int, FILE*)’:
gs.cc:107:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  107 |    register int i;
      |                 ^
gs.cc: In member function ‘double Genetic_Algorithm::worst_this_generation(const Population&, int, FILE*)’:
gs.cc:130:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  130 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::make_table(int, const Real&, int, FILE*)’:
gs.cc:287:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  287 |    register int i, j;
      |                 ^
gs.cc:287:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  287 |    register int i, j;
      |                    ^
gs.cc: In member function ‘void Genetic_Algorithm::initialize(unsigned int, unsigned int, int, FILE*)’:
gs.cc:396:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  396 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::crossover(Population&, int, FILE*)’:
gs.cc:596:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  596 |    register unsigned int i;
      |                          ^
In file included from constants.h:28,
                 from structs.h:30,
                 from rep.h:45,
                 from support.h:236:
autocomm.h:166:60: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); }
      |                                                            ^~~~~~~~~
gs.cc:641:10: note: in expansion of macro ‘assertQuatOK’
  641 |          assertQuatOK( q_father );
      |          ^~~~~~~~~~~~
autocomm.h:166:60: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); }
      |                                                            ^~~~~~~~~
gs.cc:652:10: note: in expansion of macro ‘assertQuatOK’
  652 |          assertQuatOK( q_mother );
      |          ^~~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::crossover_arithmetic(Genotype&, Genotype&, const Real&, int, FILE*)’:
gs.cc:877:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  877 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::selection_proportional(Population&, Individual*, int, FILE*)’:
gs.cc:983:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  983 |    register unsigned int i=0, start_index = 0;
      |                          ^
gs.cc:983:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  983 |    register unsigned int i=0, start_index = 0;
      |                               ^~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::selection_tournament(Population&, Individual*, int, FILE*)’:
gs.cc:1262:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1262 |    register unsigned int i = 0, start_index = 0;
      |                          ^
gs.cc:1262:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1262 |    register unsigned int i = 0, start_index = 0;
      |                                 ^~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::selection_linear_ranking(Population&, Individual*, int, FILE*)’:
gs.cc:1327:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1327 |    register unsigned int i = 0, start_index = 0;
      |                          ^
gs.cc:1327:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1327 |    register unsigned int i = 0, start_index = 0;
      |                                 ^~~~~~~~~~~
gs.cc: In member function ‘virtual int Genetic_Algorithm::search(Population&, Eval*, int, FILE*)’:
gs.cc:1420:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1420 |    register unsigned int i;
      |                          ^
In file included from initautodock.h:31,
                 from initautodock.cc:36:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
initautodock.cc: In function ‘void initautodock(const char (*)[128], Real (*)[3], const Real (*)[3], int, int, State*, const int (*)[2048], const Real (*)[3], int, int, const GridMapSetInfo*)’:
initautodock.cc:76:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   76 |     register int   xyz = 0;
      |                    ^~~
initautodock.cc:77:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   77 |     register int   i = 0;
      |                    ^
In file included from input_state.h:30,
                 from input_state.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from investigate.h:33,
                 from investigate.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
investigate.cc: In function ‘void investigate(int, int*, GroupEnergy*, const Real*, const Real*, const Real*, Boole, Real (*)[3], const Real (*)[3], const EnergyTables*, int, MapType*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], Boole, const short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, Real (*)[8][2], int*, Boole, Boole, const char*, int, int, const Real&, const Real&, const int*, Boole, const Real&, const Real&, const Real&, GridMapSetInfo*, Boole, Boole, Boole, int, int, int, FILE*)’:
investigate.cc:103:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  103 |     register int Test = -1;
      |                  ^~~~
investigate.cc:106:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  106 |     register int i = 0;
      |                  ^
investigate.cc:120:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  120 |     register int NumOutside = 0;
      |                  ^~~~~~~~~~
investigate.cc:121:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  121 |     register int LocalTest = 0;
      |                  ^~~~~~~~~
input_state.cc: In function ‘int input_state(State*, FILE*, const char*, int, int*, Real*, Real*, char*)’:
input_state.cc:70:25: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   70 |             (void) fgets(myline, LINELEN, fp);
      |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-linpack.o `test -f 'linpack.cc' || echo './'`linpack.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-ls.o `test -f 'ls.cc' || echo './'`ls.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-mapping.o `test -f 'mapping.cc' || echo './'`mapping.cc
In file included from eval.h:38,
                 from support.h:237,
                 from ls.h:40,
                 from ls.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
ls.cc: In function ‘Phenotype genPh(const Phenotype&, const Real&, const Real*, Real*, int, FILE*)’:
ls.cc:46:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |    register unsigned int i, index = 0;
      |                          ^
ls.cc:46:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |    register unsigned int i, index = 0;
      |                             ^~~~~
ls.cc: In member function ‘virtual Boole Solis_Wets::SW(Phenotype&, int, FILE*)’:
ls.cc:88:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                          ^
ls.cc:88:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                             ^
ls.cc:88:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                                ^~~~~~~~~~~~~
ls.cc:88:51: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                                                   ^~~~~~~~~~~~
ls.cc:89:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |    register Real temp_rho = rho;
      |                  ^~~~~~~~
ls.cc:92:9: warning: unused variable ‘thisQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |         ^~~~~~~~
ls.cc:92:19: warning: unused variable ‘prevQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |                   ^~~~~~~~
ls.cc:92:29: warning: unused variable ‘startQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |                             ^~~~~~~~~
ls.cc: In member function ‘virtual Boole Pseudo_Solis_Wets::SW(Phenotype&, int, FILE*)’:
ls.cc:248:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                          ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-mingw_getrusage.o `test -f 'mingw_getrusage.cc' || echo './'`mingw_getrusage.cc
ls.cc:248:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                             ^
ls.cc:248:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                ^~~~~~~~~~~~~
ls.cc:248:51: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                                   ^~~~~~~~~~~~
ls.cc:248:70: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-minmeanmax.o `test -f 'minmeanmax.cc' || echo './'`minmeanmax.cc
In file included from eval.h:38,
                 from support.h:237,
                 from mapping.cc:37:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-mkNewState.o `test -f 'mkNewState.cc' || echo './'`mkNewState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-mkTorTree.o `test -f 'mkTorTree.cc' || echo './'`mkTorTree.cc
In file included from eval.h:38,
                 from support.h:237,
                 from minmeanmax.cc:39:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
minmeanmax.cc: In function ‘void minmeanmax(FILE*, const Population&, int, const GridMapSetInfo*)’:
minmeanmax.cc:51:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                 ^
minmeanmax.cc:51:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                      ^
minmeanmax.cc:51:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                           ^
minmeanmax.cc:56:76: warning: variable ‘best’ set but not used [-Wunused-but-set-variable=]
   56 |    double minimum[ 7+MAX_TORS ], sum[ 7+MAX_TORS ], maximum[ 7+MAX_TORS ], best[ 7+MAX_TORS ];
      |                                                                            ^~~~
In file included from mkNewState.h:31,
                 from mkNewState.cc:33:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
mkNewState.cc: In function ‘void mkNewState(State*, const State*, State*, const Real (*)[3], const int (*)[2048], int, Real (*)[3], const Real (*)[3], int, const Real&, const Real&, const Real&, const Real (*)[8][2], const int*, int, int, FILE*)’:
mkNewState.cc:56:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   56 |     register int i;
      |                  ^
mkTorTree.cc: In function ‘void mkTorTree(const int*, const int (*)[2048], const char (*)[256], int, int (*)[2048], int*, int*, const char*, const char (*)[5], Boole*, int*, int*, Real*, Real*, int*, int*, int, int, FILE*)’:
mkTorTree.cc:88:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |     register int   i = 0;
      |                    ^
mkTorTree.cc:89:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |     register int   j = 0;
      |                    ^
mkTorTree.cc:90:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int   k = 0;
      |                    ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-mkRandomState.o `test -f 'mkRandomState.cc' || echo './'`mkRandomState.cc
mkTorTree.cc: At global scope:
mkTorTree.cc:456:5: warning: ‘int check_atomnumber(int, const int*, int, int, FILE*)’ defined but not used [-Wunused-function]
  456 | int check_atomnumber( const int number, const int *atomnumber, const int nrecord,
      |     ^~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-nonbonds.o `test -f 'nonbonds.cc' || echo './'`nonbonds.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-openfile.o `test -f 'openfile.cc' || echo './'`openfile.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-output_state.o `test -f 'output_state.cc' || echo './'`output_state.cc
mkRandomState.cc: In function ‘State mkRandomState(int, Real (*)[8][2], int*, GridMapSetInfo*)’:
mkRandomState.cc:44:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   44 |     register int i;
      |                  ^
In file included from nonbonds.cc:35:
mdist.h: In function ‘void mdist()’:
mdist.h:45:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   45 |         register int i,j;
      |                      ^
mdist.h:45:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   45 |         register int i,j;
      |                        ^
mdist.h:32:25: warning: operation on ‘mindist[0][0]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:89:5: note: in expansion of macro ‘set_minmax’
   89 |     set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[0][0]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:89:5: note: in expansion of macro ‘set_minmax’
   89 |     set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[1][1]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:96:5: note: in expansion of macro ‘set_minmax’
   96 |     set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[1][1]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:96:5: note: in expansion of macro ‘set_minmax’
   96 |     set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[2][2]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:102:5: note: in expansion of macro ‘set_minmax’
  102 |     set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[2][2]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:102:5: note: in expansion of macro ‘set_minmax’
  102 |     set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[3][3]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:107:5: note: in expansion of macro ‘set_minmax’
  107 |     set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming.
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[3][3]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:107:5: note: in expansion of macro ‘set_minmax’
  107 |     set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming.
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[4][4]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:111:5: note: in expansion of macro ‘set_minmax’
  111 |     set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[4][4]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:111:5: note: in expansion of macro ‘set_minmax’
  111 |     set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[5][5]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:114:5: note: in expansion of macro ‘set_minmax’
  114 |     set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[5][5]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:114:5: note: in expansion of macro ‘set_minmax’
  114 |     set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[6][6]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:116:5: note: in expansion of macro ‘set_minmax’
  116 |     set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[6][6]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:116:5: note: in expansion of macro ‘set_minmax’
  116 |     set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515
      |     ^~~~~~~~~~
nonbonds.cc: In function ‘void printbonds(int, const int*, const int (*)[16], const char*, int, int, FILE*)’:
nonbonds.cc:250:13: warning: ‘?:’ using integer constants in boolean context [-Wint-in-bool-context]
  248 |         for (int j=0; j<
      |                       ~~
  249 |             B_print_all_bonds
      |             ~~~~~~~~~~~~~~~~~
  250 |             ? MAX_NBONDS // loop over all the slots for this atom's "j" bonds
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  251 |             : nbonds[i]; // loop over this atom's "j" bonds
      |             ~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-parse_dpf_line.o `test -f 'parse_dpf_line.cc' || echo './'`parse_dpf_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-parse_param_line.o `test -f 'parse_param_line.cc' || echo './'`parse_param_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-parse_PDBQT_line.o `test -f 'parse_PDBQT_line.cc' || echo './'`parse_PDBQT_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-parse_trj_line.o `test -f 'parse_trj_line.cc' || echo './'`parse_trj_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-parsetypes.o `test -f 'parsetypes.cc' || echo './'`parsetypes.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-print_2x.o `test -f 'print_2x.cc' || echo './'`print_2x.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-print_atomic_energies.o `test -f 'print_atomic_energies.cc' || echo './'`print_atomic_energies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-print_avsfld.o `test -f 'print_avsfld.cc' || echo './'`print_avsfld.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-writePDBQT.o `test -f 'writePDBQT.cc' || echo './'`writePDBQT.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-print_rem.o `test -f 'print_rem.cc' || echo './'`print_rem.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-printdate.o `test -f 'printdate.cc' || echo './'`printdate.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-printEnergies.o `test -f 'printEnergies.cc' || echo './'`printEnergies.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from writePDBQT.h:34,
                 from writePDBQT.cc:35:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-printhms.o `test -f 'printhms.cc' || echo './'`printhms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-prClusterHist.o `test -f 'prClusterHist.cc' || echo './'`prClusterHist.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-prInitialState.o `test -f 'prInitialState.cc' || echo './'`prInitialState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-prTorConList.o `test -f 'prTorConList.cc' || echo './'`prTorConList.cc
prClusterHist.cc: In function ‘void prClusterHist(int, int, const Real&, const int*, const int (*)[2000], const Real*, const Real (*)[2000], const Real*, int, FILE*)’:
prClusterHist.cc:51:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |     register int  Rank=0,
      |                   ^~~~
prClusterHist.cc:52:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   52 |                   j=0;
      |                   ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-pso.o `test -f 'pso.cc' || echo './'`pso.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from writePDBQT.h:34,
                 from prInitialState.cc:36:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
prInitialState.cc: In function ‘void prInitialState(const EnergyBreakdown*, int, int, const Real (*)[3], const char (*)[128], const int*, EnergyComponent*, const Real*, int, Boole, Unbound_Model, int, FILE*)’:
prInitialState.cc:59:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   59 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-qmultiply.o `test -f 'qmultiply.cc' || echo './'`qmultiply.cc
prTorConList.cc: In function ‘void prTorConList(int, const Boole*, const short unsigned int (*)[256], Real (*)[8][2], int*, int, FILE*)’:
prTorConList.cc:64:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-qtransform.o `test -f 'qtransform.cc' || echo './'`qtransform.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from pso.h:4,
                 from pso.cc:1:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-quicksort.o `test -f 'quicksort.cc' || echo './'`quicksort.cc
In file included from qmultiply.cc:35:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qmultiply.cc:42:44: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   42 |                 register const Quat *const ql,   //left
      |                                            ^~
qmultiply.cc:43:44: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   43 |                 register const Quat *const qr )  //right
      |                                            ^~
qmultiply.cc: In function ‘void qmultiply(Quat*, const Quat*, const Quat*)’:
qmultiply.cc:66:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                     ^
qmultiply.cc:66:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                       ^
qmultiply.cc:66:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                         ^
qmultiply.cc:66:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                           ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-ranlib.o `test -f 'ranlib.cc' || echo './'`ranlib.cc
qmultiply.cc: In function ‘AxisAngle QuatToAxisAngle(const Quat&)’:
qmultiply.cc:224:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  224 |         register double angle = 2. * acos( input.w );
      |                         ^~~~~
qmultiply.cc: In function ‘Quat inverse(const Quat&)’:
qmultiply.cc:356:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  356 |     register Quat conj, inv;
      |                   ^~~~
qmultiply.cc:356:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  356 |     register Quat conj, inv;
      |                         ^~~
qmultiply.cc:357:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  357 |     register double inv_squared_magnitude;
      |                     ^~~~~~~~~~~~~~~~~~~~~
In file included from qtransform.h:35,
                 from qtransform.cc:32:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qtransform.cc: In function ‘void qtransform(const Coord&, const Quat&, Real (*)[3], int)’:
qtransform.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int a;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-rep.o `test -f 'rep.cc' || echo './'`rep.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-scauchy.o `test -f 'scauchy.cc' || echo './'`scauchy.cc
rep.cc: In constructor ‘IntVector::IntVector(int)’:
rep.cc:77:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   77 |    register int i;
      |                 ^
rep.cc: In constructor ‘IntVector::IntVector(int, int, int)’:
rep.cc:95:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   95 |    register int i;
      |                 ^
rep.cc: In copy constructor ‘IntVector::IntVector(const IntVector&)’:
rep.cc:129:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  129 |    for (register unsigned int i=0; i<number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& IntVector::operator=(const Representation&)’:
rep.cc:237:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  237 |    register unsigned int i;
      |                          ^
rep.cc: In constructor ‘RealVector::RealVector(int, const double&, const double&, const double&)’:
rep.cc:329:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  329 |    register int i=0;
      |                 ^
rep.cc: In copy constructor ‘RealVector::RealVector(const RealVector&)’:
rep.cc:428:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 |    for (register unsigned int i=0; i<original.number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& RealVector::operator=(const Representation&)’:
rep.cc:553:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  553 |    register unsigned int i;
      |                          ^
rep.cc: In copy constructor ‘ConstrainedRealVector::ConstrainedRealVector(const ConstrainedRealVector&)’:
rep.cc:641:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  641 |    for (register unsigned int i=0; i<original.number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘void ConstrainedRealVector::normalize()’:
rep.cc:753:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  753 |       register unsigned int i;
      |                             ^
rep.cc:754:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  754 |       register double tempsum = 0.0, hypotenuse;
      |                       ^~~~~~~
rep.cc:754:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  754 |       register double tempsum = 0.0, hypotenuse;
      |                                      ^~~~~~~~~~
rep.cc: In member function ‘virtual Representation& ConstrainedRealVector::operator=(const Representation&)’:
rep.cc:812:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  812 |    register unsigned int i;
      |                          ^
rep.cc: In copy constructor ‘BitVector::BitVector(const BitVector&)’:
rep.cc:900:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  900 |    for (register unsigned int i=0; i<number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& BitVector::operator=(const Representation&)’:
rep.cc:994:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  994 |    register unsigned int i;
      |                          ^
ranlib.cc: In function ‘ignpoi(double const&)’:
ranlib.cc:1144:21: warning: ‘m’ may be used uninitialized [-Wmaybe-uninitialized]
 1144 |     if(u > 0.458) j = IMIN(l,m);
      |                   ~~^~~~~~~~~~~
ranlib.cc:995:33: note: ‘m’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |                                 ^
ranlib.cc:1136:5: warning: ‘p’ may be used uninitialized [-Wmaybe-uninitialized]
 1136 |     if(u <= p0) return ignpoi;
      |     ^~
ranlib.cc:996:58: note: ‘p’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                          ^
ranlib.cc:1023:5: warning: ‘l’ may be used uninitialized [-Wmaybe-uninitialized]
 1023 |     if(ignpoi >= l) return ignpoi;
      |     ^~
ranlib.cc:995:31: note: ‘l’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |                               ^
ranlib.cc:1030:9: warning: ‘d’ may be used uninitialized [-Wmaybe-uninitialized]
 1030 |     if(d*u >= difmuk*difmuk*difmuk) return ignpoi;
      |        ~^~
ranlib.cc:996:26: note: ‘d’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                          ^
ranlib.cc:1017:13: warning: ‘s’ may be used uninitialized [-Wmaybe-uninitialized]
 1017 |     g = mu+s*snorm();
      |            ~^~~~~~~~
ranlib.cc:996:71: note: ‘s’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                                       ^
ranlib.cc:1092:5: warning: ‘ignpoi’ may be used uninitialized [-Wmaybe-uninitialized]
 1092 |     if(ignpoi >= 10) goto S80;
      |     ^~
ranlib.cc:995:14: note: ‘ignpoi’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |              ^~~~~~
ranlib.cc:1104:7: warning: ‘difmuk’ may be used uninitialized [-Wmaybe-uninitialized]
 1104 |     v = difmuk/fk;
      |     ~~^~~~~~~~~~~
ranlib.cc:996:32: note: ‘difmuk’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                ^~~~~~
ranlib.cc:1102:9: warning: ‘fk’ may be used uninitialized [-Wmaybe-uninitialized]
 1102 |     del = 8.333333E-2/fk;
      |     ~~~~^~~~~~~~~~~~~~~~
ranlib.cc:996:41: note: ‘fk’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                         ^~
ranlib.cc:1116:38: warning: ‘c0’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                ~~~~~~~~~~~~~~~~~~~~~~^~~~
ranlib.cc:996:14: note: ‘c0’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |              ^~
ranlib.cc:1116:31: warning: ‘c1’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                 ~~~~~~~~~~~~~~^~~~
ranlib.cc:996:17: note: ‘c1’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                 ^~
ranlib.cc:1116:24: warning: ‘c2’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                  ~~~~~~^~~~
ranlib.cc:996:20: note: ‘c2’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                    ^~
ranlib.cc:1116:21: warning: ‘c3’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                   ~~^~~
ranlib.cc:996:23: note: ‘c3’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                       ^~
ranlib.cc:1116:8: warning: ‘omega’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |     ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ranlib.cc:996:52: note: ‘omega’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                    ^~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-setflags.o `test -f 'setflags.cc' || echo './'`setflags.cc
scauchy.cc: In function ‘Real scauchy2()’:
scauchy.cc:81:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |               ^
scauchy.cc:81:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                  ^
scauchy.cc:81:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                     ^~
scauchy.cc:81:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                         ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-simanneal.o `test -f 'simanneal.cc' || echo './'`simanneal.cc
setflags.cc: In function ‘setflags(int, char const**, char const*)’:
setflags.cc:293:20: warning: ‘__strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  293 |             strncpy(logFileName, dock_param_fn, strlen(dock_param_fn)-4);
      |                    ^
setflags.cc:293:55: note: length computed here
  293 |             strncpy(logFileName, dock_param_fn, strlen(dock_param_fn)-4);
      |                                                 ~~~~~~^~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-sort_enrg.o `test -f 'sort_enrg.cc' || echo './'`sort_enrg.cc
In file included from getInitialState.h:31,
                 from simanneal.h:33,
                 from simanneal.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-stack.o `test -f 'stack.cc' || echo './'`stack.cc
simanneal.cc: In function ‘void simanneal(int*, int, int*, GroupEnergy*, int, const Real&, const char (*)[128], Real*, Real*, Real*, Boole, Real (*)[3], Real (*)[3], const char*, EnergyTables*, Real*, Boole, EnergyComponent*, int, int, FourByteLong (*)[2], const clock_t&, MapType*, int, int, NonbondParam*, int, int, State, State*, const Real&, Boole, const Real&, Boole, const char*, const Real*, const Real&, Boole, const Real&, const tms&, const int (*)[2048], const Real&, Boole, const Real&, const char*, int, int, int, const Real&, Boole, const Real&, const int*, Real (*)[3], Boole, Boole, int, int, const Real&, const Real&, Boole, const Real&, Boole, const char*, Boole, short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, const Real (*)[8][2], const int*, Boole, Boole, Boole, const Real&, const Real&, int, int, const int*, Boole, const Real&, const Real&, const ParameterEntry*, const Real&, GridMapSetInfo*, Boole, Boole, const char (*)[256], Unbound_Model, int, FILE*)’:
simanneal.cc:188:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  188 |     register int i = 0;
      |                  ^
simanneal.cc:189:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  189 |     register int nacc = 0;
      |                  ^~~~
simanneal.cc:190:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  190 |     register int nAcc = 0;
      |                  ^~~~
simanneal.cc:191:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  191 |     register int nAccProb = 0;
      |                  ^~~~~~~~
simanneal.cc:192:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  192 |     register int nedge = 0;
      |                  ^~~~~
simanneal.cc:193:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  193 |     register int nrej = 0;
      |                  ^~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-stop.o `test -f 'stop.cc' || echo './'`stop.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-strindex.o `test -f 'strindex.cc' || echo './'`strindex.cc
strindex.cc: In function ‘int strindex(const char*, const char*)’:
strindex.cc:54:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                  ^
strindex.cc:54:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                    ^~
strindex.cc:54:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                       ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-success.o `test -f 'success.cc' || echo './'`success.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-support.o `test -f 'support.cc' || echo './'`support.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-swap.o `test -f 'swap.cc' || echo './'`swap.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-threadlog.o `test -f 'threadlog.cc' || echo './'`threadlog.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-timesys.o `test -f 'timesys.cc' || echo './'`timesys.cc
In file included from eval.h:38,
                 from support.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
support.cc: In copy constructor ‘Population::Population(const Population&)’:
support.cc:52:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   52 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::msort(int)’:
support.cc:147:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  147 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::print(FILE*, int) const’:
support.cc:187:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  187 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::printPopulationAsStates(FILE*, int, int) const’:
support.cc:348:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  348 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::printPopulationAsCoordsEnergies(FILE*, int, int) const’:
support.cc:388:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  388 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::set_eob(int*)’:
support.cc:433:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  433 |    for (register int i=0; i<MAX_TORS; i++) {
      |                      ^
support.cc: In constructor ‘Genotype::Genotype(unsigned int, Representation**)’:
support.cc:456:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                          ^
support.cc:456:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                             ^
support.cc:456:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                                ^
support.cc: In copy constructor ‘Genotype::Genotype(const Genotype&)’:
support.cc:484:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  484 |    register unsigned int i;
      |                          ^
support.cc: In destructor ‘Genotype::~Genotype()’:
support.cc:512:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  512 |    register unsigned int i;
      |                          ^
support.cc: In constructor ‘Phenotype::Phenotype(unsigned int, Representation**, Eval*)’:
support.cc:674:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                          ^
support.cc:674:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                             ^
support.cc:674:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                                ^
support.cc: In copy constructor ‘Phenotype::Phenotype(const Phenotype&)’:
support.cc:700:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  700 |    register unsigned int i;
      |                          ^
support.cc: In member function ‘Phenotype& Phenotype::operator=(const Phenotype&)’:
support.cc:731:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  731 |    register unsigned int i;
      |                          ^
support.cc: In destructor ‘Phenotype::~Phenotype()’:
support.cc:781:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  781 |    register unsigned int i;
      |                          ^
support.cc: In member function ‘Population& Population::operator=(const Population&)’:
support.cc:968:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  968 |    register int i;
      |                 ^
threadlog.cc:72: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
   72 | #pragma omp critical
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-timesyshms.o `test -f 'timesyshms.cc' || echo './'`timesyshms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-torNorVec.o `test -f 'torNorVec.cc' || echo './'`torNorVec.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-torsion.o `test -f 'torsion.cc' || echo './'`torsion.cc
torNorVec.cc: In function ‘void torNorVec(const Real (*)[3], int, const int (*)[2048], Real (*)[3], int, FILE*)’:
torNorVec.cc:47:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   47 |     register int xyz = 0;
      |                  ^~~
torNorVec.cc:48:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int j = 0;
      |                  ^
torNorVec.cc: In function ‘void update_torsion_vectors(const Real (*)[3], int, const int (*)[2048], Real (*)[3], Molecule*, int, int, FILE*)’:
torNorVec.cc:104:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  104 |     register int i=0, j=0;
      |                  ^
torNorVec.cc:104:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  104 |     register int i=0, j=0;
      |                       ^
torsion.cc: In function ‘void torsion(const State&, Real (*)[3], const Real (*)[3], const int (*)[2048], int)’:
torsion.cc:62:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |     register double crdtemp[SPACE];
      |                     ^~~~~~~
torsion.cc:63:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   63 |     register double  d[SPACE];
      |                      ^
torsion.cc:64:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register double sv[SPACE];
      |                     ^~
torsion.cc:65:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register double ov[SPACE];
      |                     ^~
torsion.cc:66:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double  k[SPACE][SPACE];
      |                      ^
torsion.cc:67:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                     ^
torsion.cc:67:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                        ^
torsion.cc:67:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                           ^
torsion.cc:67:30: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                              ^~~
torsion.cc:67:35: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                                   ^~~~~~~~
torsion.cc:68:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                  ^
torsion.cc:68:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                     ^
torsion.cc:68:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                        ^~~~~
torsion.cc:68:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                               ^~~~~~
torsion.cc:68:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                                       ^~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-trilinterp.o `test -f 'trilinterp.cc' || echo './'`trilinterp.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-usage.o `test -f 'usage.cc' || echo './'`usage.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-weedbonds.o `test -f 'weedbonds.cc' || echo './'`weedbonds.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-warn_bad_file.o `test -f 'warn_bad_file.cc' || echo './'`warn_bad_file.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-coliny.o `test -f 'coliny.cc' || echo './'`coliny.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-eintcal.o `test -f 'eintcal.cc' || echo './'`eintcal.cc
trilinterp.cc: In function ‘Real trilinterp(int, int, const Real (*)[3], const Real*, const Real*, const int*, MapType*, const GridMapSetInfo*, const int*, EnergyComponent*, EnergyComponent*, EnergyComponent*)’:
trilinterp.cc:88:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |     register int i;               /* i-th atom */
      |                  ^
trilinterp.cc:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                         ^
trilinterp.cc:92:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                            ^
trilinterp.cc:92:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                               ^
trilinterp.cc:93:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                         ^
trilinterp.cc:93:30: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                              ^
trilinterp.cc:93:35: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                                   ^
trilinterp.cc:96:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   96 |         register int AtomType;        /* atom type */
      |                      ^~~~~~~~
trilinterp.cc:97:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                      ^~
trilinterp.cc:97:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                           ^~
trilinterp.cc:97:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                                ^~
trilinterp.cc:98:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                      ^~
trilinterp.cc:98:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                           ^~
trilinterp.cc:98:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                                ^~
trilinterp.cc:99:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                         ^
trilinterp.cc:99:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                           ^
trilinterp.cc:99:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                             ^
trilinterp.cc:98:22: warning: variable ‘u1’ set but not used [-Wunused-but-set-variable=]
   98 |         register int u1,  v1,  w1;
      |                      ^~
trilinterp.cc:98:27: warning: variable ‘v1’ set but not used [-Wunused-but-set-variable=]
   98 |         register int u1,  v1,  w1;
      |                           ^~
trilinterp.cc:98:32: warning: variable ‘w1’ set but not used [-Wunused-but-set-variable=]
   98 |         register int u1,  v1,  w1;
      |                                ^~
weedbonds.cc: In function ‘void weedbonds(int, const char (*)[5], const int*, int, const int (*)[2048], int (*)[2048], int*, NonbondParam*, int*, int, const int*, int, int, FILE*)’:
weedbonds.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int i = 0;
      |                  ^
weedbonds.cc:66:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register int j = 0;
      |                  ^
weedbonds.cc:67:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register int k = 0;
      |                  ^
weedbonds.cc: In function ‘void print_nonbonds(int, const char (*)[5], const int*, int, const int (*)[2048], int (*)[2048], int, const NonbondParam*, const int*, int, FILE*)’:
weedbonds.cc:252:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  252 |     register int i = 0;
      |                  ^
weedbonds.cc:253:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  253 |     register int j = 0;
      |                  ^
weedbonds.cc:254:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  254 |     register int k = 0;
      |                  ^
eintcal.cc: In function ‘Real eintcal(const NonbondParam*, const EnergyTables*, const Real (*)[3], int, int*, GroupEnergy*, Boole, Boole, const Real&, const Real*, Boole, Boole, int, FILE*)’:
eintcal.cc:206:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  206 |             register double r2;
      |                             ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-eintcalPrint.o `test -f 'eintcalPrint.cc' || echo './'`eintcalPrint.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-intnbtable.o `test -f 'intnbtable.cc' || echo './'`intnbtable.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4-nbe.o `test -f 'nbe.cc' || echo './'`nbe.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-main.o `test -f 'main.cc' || echo './'`main.cc
In file included from eintcalPrint.cc:29:
./eintcal.cc: In function ‘Real eintcalPrint(const NonbondParam*, const EnergyTables*, const Real (*)[3], int, int*, GroupEnergy*, Boole, Boole, const Real&, const Real*, Boole, Boole, int, const int*, const char (*)[3], int, FILE*)’:
./eintcal.cc:206:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  206 |             register double r2;
      |                             ^~
./eintcal.cc:130:12: warning: variable ‘total_e_vdW_Hb’ set but not used [-Wunused-but-set-variable=]
  130 |     double total_e_vdW_Hb=0.0L;
      |            ^~~~~~~~~~~~~~
intnbtable.cc: In function ‘void intnbtable(Boole*, int, int, const GridMapSetInfo*, const Real&, const Real&, int, int, Boole, const Real&, Linear_FE_Model, const double&, EnergyTables*, Boole, FILE*, int)’:
intnbtable.cc:83:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   83 |     register int i;
      |                  ^
intnbtable.cc: In function ‘void setup_distdepdiel(FILE*, int, EnergyTables*)’:
intnbtable.cc:268:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  268 |     register int i=0;
      |                  ^
intnbtable.cc:269:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  269 |     register double distance=0.0L;
      |                     ^~~~~~~~
nbe.cc: In function ‘void nbe(const GridMapSetInfo*, const EnergyTables*, int, int, FILE*)’:
nbe.cc:64:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register int i = 0;
      |                  ^
nbe.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int j = 0;
      |                  ^
nbe.cc:66:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register int k = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-alea.o `test -f 'alea.cc' || echo './'`alea.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-analysis.o `test -f 'analysis.cc' || echo './'`analysis.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-atom_parameter_manager.o `test -f 'atom_parameter_manager.cc' || echo './'`atom_parameter_manager.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from hybrids.h:40,
                 from main.cc:98:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from analysis.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
analysis.cc: In function ‘void analysis(int, int*, GroupEnergy*, int, const char (*)[128], const Real*, const Real*, const Real*, Boole, const Real&, const Real (*)[3], const EnergyTables*, MapType*, const Real*, int, int, const NonbondParam*, int, int, State*, const char*, const Real*, Boole, Boole, const int (*)[2048], const int*, const Real (*)[3], const char*, const Real&, Boole, int, const int*, Boole, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Boole, Unbound_Model, Boole, int, int, FILE*)’:
analysis.cc:138:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  138 |     register int   i = 0;
      |                    ^
analysis.cc:139:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  139 |     register int   j = 0;
      |                    ^
analysis.cc:140:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  140 |     register int   k = 0;
      |                    ^
analysis.cc:141:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  141 |     register int   t = 0;
      |                    ^
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
main.cc: In function ‘int main(int, const char**)’:
main.cc:480:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  480 | register int i = 0;
      |              ^
main.cc:481:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  481 | register int j = 0;
      |              ^
main.cc:482:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  482 | register int k = 0;
      |              ^
main.cc:484:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  484 | register int xyz = 0;
      |              ^~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-banner.o `test -f 'banner.cc' || echo './'`banner.cc
main.cc:3282:21: warning: unused variable ‘thread_num’ [-Wunused-variable]
 3282 |                 int thread_num=omp_get_thread_num();
      |                     ^~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-bestpdb.o `test -f 'bestpdb.cc' || echo './'`bestpdb.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-calculateEnergies.o `test -f 'calculateEnergies.cc' || echo './'`calculateEnergies.cc
bestpdb.cc: In function ‘void bestpdb(int, const int*, const int (*)[2000], const Real*, const Real (*)[2048][3], const char (*)[128], int, Boole, const Real*, int, FILE*)’:
bestpdb.cc:58:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   58 |     register int  i=0,
      |                   ^
bestpdb.cc:59:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   59 |                   j=0,
      |                   ^
bestpdb.cc:60:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   60 |                   k=0,
      |                   ^
bestpdb.cc:61:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |                   confnum=0;
      |                   ^~~~~~~
bestpdb.cc:123:62: warning: ‘%4d’ directive writing between 4 and 10 bytes into a region of size 9 [-Wformat-overflow=]
  123 |                     sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11],
      |                                                              ^~~
bestpdb.cc:123:53: note: directive argument in the range [1, 2147483647]
  123 |                     sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11],
      |                                                     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from bestpdb.cc:33:
In function ‘sprintf’,
    inlined from ‘bestpdb(int, int const*, int const (*) [2000], double const*, double const (*) [2048][3], char const (*) [128], int, int, double const*, int, _IO_FILE*)’ at bestpdb.cc:123:28:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 20 and 26 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-call_glss.o `test -f 'call_glss.cc' || echo './'`call_glss.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-call_ls.o `test -f 'call_ls.cc' || echo './'`call_ls.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-center_ligand.o `test -f 'center_ligand.cc' || echo './'`center_ligand.cc
In file included from eval.h:38,
                 from support.h:237,
                 from ls.h:40,
                 from call_ls.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from call_glss.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
call_ls.cc: In function ‘Representation** cnv_state_to_rep(const State&)’:
call_ls.cc:50:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   50 |    register int i;
      |                 ^
call_glss.cc: In function ‘State call_glss(Global_Search*, Local_Search*, const State&, unsigned int, unsigned int, int, FILE*, const Output_pop_stats&, Molecule*, Eval*, Boole, Boole, Boole, const GridMapSetInfo*, const char*, int*)’:
call_glss.cc:259:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  259 |     register unsigned int i;
      |                           ^
call_glss.cc:260:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  260 |     register int j;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-changeState.o `test -f 'changeState.cc' || echo './'`changeState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-check_header_float.o `test -f 'check_header_float.cc' || echo './'`check_header_float.cc
In file included from changeState.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
changeState.cc: In function ‘State changeState(const State&, const Real&, const Real&, int, const Real (*)[8][2], const int*)’:
changeState.cc:46:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-check_header_int.o `test -f 'check_header_int.cc' || echo './'`check_header_int.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-check_header_line.o `test -f 'check_header_line.cc' || echo './'`check_header_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-cluster_analysis.o `test -f 'cluster_analysis.cc' || echo './'`cluster_analysis.cc
main.cc:1250:89: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 313 [-Wformat-overflow=]
 1250 |                     prStr( error_message,"%s:         Edit the parameter library file \"%s\" and try again.\n", programname, FN_parameter_library );
      |                                                                                         ^~                                   ~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from /usr/include/c++/16/cstdio:47,
                 from /usr/include/c++/16/ext/string_conversions.h:47,
                 from /usr/include/c++/16/bits/basic_string.h:4465,
                 from /usr/include/c++/16/string:57,
                 from main.cc:71:
In function ‘sprintf’,
    inlined from ‘main’ at main.cc:1250:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 61 or more bytes (assuming 4156) into a destination of size 356
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
main.cc: In function ‘main’:
main.cc:2367:82: warning: ‘%s’ directive writing up to 511 bytes into a region of size 320 [-Wformat-overflow=]
 2367 |                     prStr( error_message,"%s: ERROR:  Unknown ligand atom type \"%s\"; add parameters for it to the parameter library first!\n", programname, param[i]);
      |                                                                                  ^~
In function ‘sprintf’,
    inlined from ‘main’ at main.cc:2367:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 94 or more bytes (assuming 605) into a destination of size 356
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
cluster_analysis.cc: In function ‘int cluster_analysis(const Real&, int (*)[2000], int*, const int*, int, int, const int*, const Real (*)[2048][3], const Real (*)[3], const Real*, Real (*)[2000], Boole, Boole, Real (*)[3], int, Real*, Boole, int)’:
cluster_analysis.cc:61:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |     register int compare = 0,
      |                  ^~~~~~~
cluster_analysis.cc:62:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |                  i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-clmode.o `test -f 'clmode.cc' || echo './'`clmode.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-cnv_state_to_coords.o `test -f 'cnv_state_to_coords.cc' || echo './'`cnv_state_to_coords.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-com.o `test -f 'com.cc' || echo './'`com.cc
In file included from clmode.h:40,
                 from clmode.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
clmode.cc: In function ‘void clmode(int, const Real&, const char*, const clock_t&, const tms&, Boole, const char*, const Real (*)[3], const Real*, Boole, Boole, const char*, Boole, int, int, FILE*)’:
clmode.cc:62:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |     register int xyz = 0;
      |                  ^~~
clmode.cc:89:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |     register int i = 0;
      |                  ^
clmode.cc:90:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int j = 0;
      |                  ^
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from cnv_state_to_coords.cc:37:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
clmode.cc:210:28: warning: ‘__strncpy_chk’ output may be truncated copying 30 bytes from a string of length 255 [-Wstringop-truncation]
  210 |                     strncpy( atomstuff[atomCounter], line, (size_t)30 );
      |                            ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-conformation_sampler.o `test -f 'conformation_sampler.cc' || echo './'`conformation_sampler.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-dimLibrary.o `test -f 'dimLibrary.cc' || echo './'`dimLibrary.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-distdepdiel.o `test -f 'distdepdiel.cc' || echo './'`distdepdiel.cc
In file included from eval.h:38,
                 from support.h:237,
                 from conformation_sampler.h:29,
                 from conformation_sampler.cc:27:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
conformation_sampler.cc: In constructor ‘ConformationSampler::ConformationSampler(const State&, int, Eval*, int, FILE*)’:
conformation_sampler.cc:99:10: warning: variable ‘base_q’ set but not used [-Wunused-but-set-variable=]
   99 |     Quat base_q = probe_point.readQuat();
      |          ^~~~~~
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from pso.h:4,
                 from dimLibrary.cc:6:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
dimLibrary.cc: In function ‘void copyDimension(State*, const Position&)’:
dimLibrary.cc:17:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   17 |         register int i, j;
      |                      ^
dimLibrary.cc:17:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   17 |         register int i, j;
      |                         ^
dimLibrary.cc: In function ‘void copyState2Dimension(Position*, const State&)’:
dimLibrary.cc:34:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   34 |         register int i, j;
      |                      ^
dimLibrary.cc:34:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   34 |         register int i, j;
      |                         ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-stateLibrary.o `test -f 'stateLibrary.cc' || echo './'`stateLibrary.cc
In file included from stateLibrary.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
stateLibrary.cc: In function ‘void initialiseState(State*)’:
stateLibrary.cc:40:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   40 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘void copyState(State*, const State&)’:
stateLibrary.cc:61:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘void printState(FILE*, State, int)’:
stateLibrary.cc:90:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘int checkState(FILE*, const State*)’:
stateLibrary.cc:199:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  199 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘Molecule copyStateToMolecule(const State*, Molecule*)’:
stateLibrary.cc:251:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  251 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-readfield.o `test -f 'readfield.cc' || echo './'`readfield.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-readmap.o `test -f 'readmap.cc' || echo './'`readmap.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-readPDBQT.o `test -f 'readPDBQT.cc' || echo './'`readPDBQT.cc
readfield.cc: In function ‘void readfield(GridMapSetInfo*, char*, const clock_t&, const tms&, int, FILE*)’:
readfield.cc:49:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   49 |     register int i = 0;
      |                  ^
readfield.cc:83:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   83 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:108:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  108 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:116:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  116 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:123:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  123 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-read_parameter_library.o `test -f 'read_parameter_library.cc' || echo './'`read_parameter_library.cc
readmap.cc: In function ‘Statistics readmap(char*, int, const clock_t&, const tms&, Boole, Boole*, int, const GridMapSetInfo*, MapType*, char, FILE*)’:
readmap.cc:82:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   82 |     register int xyz = 0;
      |                  ^~~
readmap.cc:83:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   83 |     register int i = 0;
      |                  ^
readmap.cc:84:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   84 |     register int j = 0;
      |                  ^
readmap.cc:85:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   85 |     register int k = 0;
      |                  ^
readPDBQT.cc: In function ‘Molecule readPDBQT(char*, int, int*, Real (*)[3], Real*, Boole*, int*, int*, char (*)[5], char*, char*, Boole, char (*)[128], int*, int*, Boole*, int*, int*, Real*, Real*, int*, int*, int (*)[2048], Real (*)[3], int*, int*, NonbondParam*, const clock_t&, const tms&, const char*, int*, int*, int, char (*)[256], int*, int, int, FILE*)’:
readPDBQT.cc:138:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  138 |         register int    i = 0;
      |                         ^
readPDBQT.cc:139:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  139 |         register int    j = 0;
      |                         ^
readPDBQT.cc:133:25: warning: variable ‘B_has_conect_records’ set but not used [-Wunused-but-set-variable=]
  133 |         Boole           B_has_conect_records = FALSE;
      |                         ^~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-eval.o `test -f 'eval.cc' || echo './'`eval.cc
read_parameter_library.cc: In function ‘void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)’:
read_parameter_library.cc:207:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  207 |     register int counter = 0;
      |                  ^~~~~~~
readPDBQT.cc:370:308: warning: ‘ could not be found;
	check ...’ directive writing 238 bytes into a region of size between 195 and 212 [-Wformat-overflow=]
  370 |                     prStr(message, "%s: WARNING: the atom type (%s) of atom number %d could not be found;\n\tcheck that this atom type is listed after the \"ligand_types\" keyword in the DPF,\n\tand make sure to add a \"map\" keyword to the DPF for this atom type.\n\tNote that AutoDock will use the default atom type = 1, instead.\n\n", programname, this_parameter_entry.autogrid_type, natom+1);
      |                                                                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from readPDBQT.cc:33:
In function ‘sprintf’,
    inlined from ‘readPDBQT(char*, int, int*, double (*) [3], double*, int*, int*, int*, char (*) [5], char*, char*, int, char (*) [128], int*, int*, int*, int*, int*, double*, double*, int*, int*, int (*) [2048], double (*) [3], int*, int*, nonbond_param*, long const&, tms const&, char const*, int*, int*, int, char (*) [256], int*, int, int, _IO_FILE*)’ at readPDBQT.cc:370:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 283 or more bytes (assuming 300) into a destination of size 256
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-gencau.o `test -f 'gencau.cc' || echo './'`gencau.cc
In file included from eval.h:38,
                 from eval.cc:39:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-getrms.o `test -f 'getrms.cc' || echo './'`getrms.cc
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
eval.cc: In function ‘void make_state_from_rep(const Representation* const*, State*, int, FILE*)’:
eval.cc:72:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   72 |    register int i;
      |                 ^
eval.cc: In member function ‘double Eval::eval(int)’:
eval.cc:135:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  135 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-get_atom_type.o `test -f 'get_atom_type.cc' || echo './'`get_atom_type.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-getInitialState.o `test -f 'getInitialState.cc' || echo './'`getInitialState.cc
getrms.cc: In function ‘Real getrms(const Real (*)[3], const Real (*)[3], Boole, Boole, int, const int*, Boole, int)’:
getrms.cc:48:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                  ^
getrms.cc:48:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                     ^
getrms.cc:48:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                        ^~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-getpdbcrds.o `test -f 'getpdbcrds.cc' || echo './'`getpdbcrds.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-gs.o `test -f 'gs.cc' || echo './'`gs.cc
get_atom_type.cc: In function ‘int get_atom_type(const char*)’:
get_atom_type.cc:53:9: warning: variable ‘bond_index’ set but not used [-Wunused-but-set-variable=]
   53 |     int bond_index = -1;
      |         ^~~~~~~~~~
In file included from getInitialState.h:31,
                 from getInitialState.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
getInitialState.cc: In function ‘void getInitialState(Real*, const Real&, State*, State*, State*, Boole, Boole, Boole, const Real*, const Real*, const Real*, Real (*)[3], const Real (*)[3], const char (*)[128], EnergyComponent*, const EnergyTables*, Boole, MapType*, int, int, int*, GroupEnergy*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], int, int, const Real&, int, const int*, Boole, const Real&, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Unbound_Model, int, FILE*)’:
getInitialState.cc:111:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  111 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-initautodock.o `test -f 'initautodock.cc' || echo './'`initautodock.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from gs.cc:42:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-input_state.o `test -f 'input_state.cc' || echo './'`input_state.cc
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-investigate.o `test -f 'investigate.cc' || echo './'`investigate.cc
gs.cc: In function ‘double worst_in_window(const double*, int, int, FILE*)’:
gs.cc:73:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   73 |    register int i;
      |                 ^
gs.cc: In function ‘double avg_in_window(const double*, int, FILE*)’:
gs.cc:107:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  107 |    register int i;
      |                 ^
gs.cc: In member function ‘double Genetic_Algorithm::worst_this_generation(const Population&, int, FILE*)’:
gs.cc:130:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  130 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::make_table(int, const Real&, int, FILE*)’:
gs.cc:287:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  287 |    register int i, j;
      |                 ^
gs.cc:287:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  287 |    register int i, j;
      |                    ^
gs.cc: In member function ‘void Genetic_Algorithm::initialize(unsigned int, unsigned int, int, FILE*)’:
gs.cc:396:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  396 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::crossover(Population&, int, FILE*)’:
gs.cc:596:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  596 |    register unsigned int i;
      |                          ^
In file included from constants.h:28,
                 from structs.h:30,
                 from rep.h:45,
                 from support.h:236:
autocomm.h:166:60: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); }
      |                                                            ^~~~~~~~~
gs.cc:641:10: note: in expansion of macro ‘assertQuatOK’
  641 |          assertQuatOK( q_father );
      |          ^~~~~~~~~~~~
autocomm.h:166:60: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); }
      |                                                            ^~~~~~~~~
gs.cc:652:10: note: in expansion of macro ‘assertQuatOK’
  652 |          assertQuatOK( q_mother );
      |          ^~~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::crossover_arithmetic(Genotype&, Genotype&, const Real&, int, FILE*)’:
gs.cc:877:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  877 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::selection_proportional(Population&, Individual*, int, FILE*)’:
gs.cc:983:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  983 |    register unsigned int i=0, start_index = 0;
      |                          ^
gs.cc:983:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  983 |    register unsigned int i=0, start_index = 0;
      |                               ^~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::selection_tournament(Population&, Individual*, int, FILE*)’:
gs.cc:1262:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1262 |    register unsigned int i = 0, start_index = 0;
      |                          ^
gs.cc:1262:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1262 |    register unsigned int i = 0, start_index = 0;
      |                                 ^~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::selection_linear_ranking(Population&, Individual*, int, FILE*)’:
gs.cc:1327:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1327 |    register unsigned int i = 0, start_index = 0;
      |                          ^
gs.cc:1327:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1327 |    register unsigned int i = 0, start_index = 0;
      |                                 ^~~~~~~~~~~
gs.cc: In member function ‘virtual int Genetic_Algorithm::search(Population&, Eval*, int, FILE*)’:
gs.cc:1420:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1420 |    register unsigned int i;
      |                          ^
In file included from initautodock.h:31,
                 from initautodock.cc:36:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
initautodock.cc: In function ‘void initautodock(const char (*)[128], Real (*)[3], const Real (*)[3], int, int, State*, const int (*)[2048], const Real (*)[3], int, int, const GridMapSetInfo*)’:
initautodock.cc:76:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   76 |     register int   xyz = 0;
      |                    ^~~
initautodock.cc:77:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   77 |     register int   i = 0;
      |                    ^
In file included from input_state.h:30,
                 from input_state.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from investigate.h:33,
                 from investigate.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
investigate.cc: In function ‘void investigate(int, int*, GroupEnergy*, const Real*, const Real*, const Real*, Boole, Real (*)[3], const Real (*)[3], const EnergyTables*, int, MapType*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], Boole, const short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, Real (*)[8][2], int*, Boole, Boole, const char*, int, int, const Real&, const Real&, const int*, Boole, const Real&, const Real&, const Real&, GridMapSetInfo*, Boole, Boole, Boole, int, int, int, FILE*)’:
investigate.cc:103:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  103 |     register int Test = -1;
      |                  ^~~~
investigate.cc:106:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  106 |     register int i = 0;
      |                  ^
investigate.cc:120:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  120 |     register int NumOutside = 0;
      |                  ^~~~~~~~~~
investigate.cc:121:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  121 |     register int LocalTest = 0;
      |                  ^~~~~~~~~
input_state.cc: In function ‘int input_state(State*, FILE*, const char*, int, int*, Real*, Real*, char*)’:
input_state.cc:70:25: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   70 |             (void) fgets(myline, LINELEN, fp);
      |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-linpack.o `test -f 'linpack.cc' || echo './'`linpack.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-ls.o `test -f 'ls.cc' || echo './'`ls.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-mapping.o `test -f 'mapping.cc' || echo './'`mapping.cc
In file included from eval.h:38,
                 from support.h:237,
                 from ls.h:40,
                 from ls.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
ls.cc: In function ‘Phenotype genPh(const Phenotype&, const Real&, const Real*, Real*, int, FILE*)’:
ls.cc:46:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |    register unsigned int i, index = 0;
      |                          ^
ls.cc:46:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |    register unsigned int i, index = 0;
      |                             ^~~~~
ls.cc: In member function ‘virtual Boole Solis_Wets::SW(Phenotype&, int, FILE*)’:
ls.cc:88:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                          ^
ls.cc:88:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                             ^
ls.cc:88:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                                ^~~~~~~~~~~~~
ls.cc:88:51: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                                                   ^~~~~~~~~~~~
ls.cc:89:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |    register Real temp_rho = rho;
      |                  ^~~~~~~~
ls.cc:92:9: warning: unused variable ‘thisQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |         ^~~~~~~~
ls.cc:92:19: warning: unused variable ‘prevQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |                   ^~~~~~~~
ls.cc:92:29: warning: unused variable ‘startQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |                             ^~~~~~~~~
ls.cc: In member function ‘virtual Boole Pseudo_Solis_Wets::SW(Phenotype&, int, FILE*)’:
ls.cc:248:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                          ^
ls.cc:248:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                             ^
ls.cc:248:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                ^~~~~~~~~~~~~
ls.cc:248:51: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                                   ^~~~~~~~~~~~
ls.cc:248:70: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-mingw_getrusage.o `test -f 'mingw_getrusage.cc' || echo './'`mingw_getrusage.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-minmeanmax.o `test -f 'minmeanmax.cc' || echo './'`minmeanmax.cc
In file included from eval.h:38,
                 from support.h:237,
                 from mapping.cc:37:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-mkNewState.o `test -f 'mkNewState.cc' || echo './'`mkNewState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-mkTorTree.o `test -f 'mkTorTree.cc' || echo './'`mkTorTree.cc
In file included from eval.h:38,
                 from support.h:237,
                 from minmeanmax.cc:39:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
minmeanmax.cc: In function ‘void minmeanmax(FILE*, const Population&, int, const GridMapSetInfo*)’:
minmeanmax.cc:51:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                 ^
minmeanmax.cc:51:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                      ^
minmeanmax.cc:51:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                           ^
minmeanmax.cc:56:76: warning: variable ‘best’ set but not used [-Wunused-but-set-variable=]
   56 |    double minimum[ 7+MAX_TORS ], sum[ 7+MAX_TORS ], maximum[ 7+MAX_TORS ], best[ 7+MAX_TORS ];
      |                                                                            ^~~~
In file included from mkNewState.h:31,
                 from mkNewState.cc:33:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
mkNewState.cc: In function ‘void mkNewState(State*, const State*, State*, const Real (*)[3], const int (*)[2048], int, Real (*)[3], const Real (*)[3], int, const Real&, const Real&, const Real&, const Real (*)[8][2], const int*, int, int, FILE*)’:
mkNewState.cc:56:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   56 |     register int i;
      |                  ^
mkTorTree.cc: In function ‘void mkTorTree(const int*, const int (*)[2048], const char (*)[256], int, int (*)[2048], int*, int*, const char*, const char (*)[5], Boole*, int*, int*, Real*, Real*, int*, int*, int, int, FILE*)’:
mkTorTree.cc:88:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |     register int   i = 0;
      |                    ^
mkTorTree.cc:89:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |     register int   j = 0;
      |                    ^
mkTorTree.cc:90:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int   k = 0;
      |                    ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-mkRandomState.o `test -f 'mkRandomState.cc' || echo './'`mkRandomState.cc
mkTorTree.cc: At global scope:
mkTorTree.cc:456:5: warning: ‘int check_atomnumber(int, const int*, int, int, FILE*)’ defined but not used [-Wunused-function]
  456 | int check_atomnumber( const int number, const int *atomnumber, const int nrecord,
      |     ^~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-nonbonds.o `test -f 'nonbonds.cc' || echo './'`nonbonds.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-openfile.o `test -f 'openfile.cc' || echo './'`openfile.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-output_state.o `test -f 'output_state.cc' || echo './'`output_state.cc
mkRandomState.cc: In function ‘State mkRandomState(int, Real (*)[8][2], int*, GridMapSetInfo*)’:
mkRandomState.cc:44:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   44 |     register int i;
      |                  ^
In file included from nonbonds.cc:35:
mdist.h: In function ‘void mdist()’:
mdist.h:45:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   45 |         register int i,j;
      |                      ^
mdist.h:45:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   45 |         register int i,j;
      |                        ^
mdist.h:32:25: warning: operation on ‘mindist[0][0]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:89:5: note: in expansion of macro ‘set_minmax’
   89 |     set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[0][0]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:89:5: note: in expansion of macro ‘set_minmax’
   89 |     set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[1][1]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:96:5: note: in expansion of macro ‘set_minmax’
   96 |     set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[1][1]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:96:5: note: in expansion of macro ‘set_minmax’
   96 |     set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[2][2]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:102:5: note: in expansion of macro ‘set_minmax’
  102 |     set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[2][2]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:102:5: note: in expansion of macro ‘set_minmax’
  102 |     set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[3][3]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:107:5: note: in expansion of macro ‘set_minmax’
  107 |     set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming.
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[3][3]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:107:5: note: in expansion of macro ‘set_minmax’
  107 |     set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming.
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[4][4]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:111:5: note: in expansion of macro ‘set_minmax’
  111 |     set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[4][4]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:111:5: note: in expansion of macro ‘set_minmax’
  111 |     set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[5][5]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:114:5: note: in expansion of macro ‘set_minmax’
  114 |     set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[5][5]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:114:5: note: in expansion of macro ‘set_minmax’
  114 |     set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[6][6]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:116:5: note: in expansion of macro ‘set_minmax’
  116 |     set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[6][6]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:116:5: note: in expansion of macro ‘set_minmax’
  116 |     set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515
      |     ^~~~~~~~~~
nonbonds.cc: In function ‘void printbonds(int, const int*, const int (*)[16], const char*, int, int, FILE*)’:
nonbonds.cc:250:13: warning: ‘?:’ using integer constants in boolean context [-Wint-in-bool-context]
  248 |         for (int j=0; j<
      |                       ~~
  249 |             B_print_all_bonds
      |             ~~~~~~~~~~~~~~~~~
  250 |             ? MAX_NBONDS // loop over all the slots for this atom's "j" bonds
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  251 |             : nbonds[i]; // loop over this atom's "j" bonds
      |             ~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-parse_dpf_line.o `test -f 'parse_dpf_line.cc' || echo './'`parse_dpf_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-parse_param_line.o `test -f 'parse_param_line.cc' || echo './'`parse_param_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-parse_PDBQT_line.o `test -f 'parse_PDBQT_line.cc' || echo './'`parse_PDBQT_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-parse_trj_line.o `test -f 'parse_trj_line.cc' || echo './'`parse_trj_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-parsetypes.o `test -f 'parsetypes.cc' || echo './'`parsetypes.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-print_2x.o `test -f 'print_2x.cc' || echo './'`print_2x.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-print_atomic_energies.o `test -f 'print_atomic_energies.cc' || echo './'`print_atomic_energies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-print_avsfld.o `test -f 'print_avsfld.cc' || echo './'`print_avsfld.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-writePDBQT.o `test -f 'writePDBQT.cc' || echo './'`writePDBQT.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-print_rem.o `test -f 'print_rem.cc' || echo './'`print_rem.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-printdate.o `test -f 'printdate.cc' || echo './'`printdate.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-printEnergies.o `test -f 'printEnergies.cc' || echo './'`printEnergies.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from writePDBQT.h:34,
                 from writePDBQT.cc:35:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-printhms.o `test -f 'printhms.cc' || echo './'`printhms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-prClusterHist.o `test -f 'prClusterHist.cc' || echo './'`prClusterHist.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-prInitialState.o `test -f 'prInitialState.cc' || echo './'`prInitialState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-prTorConList.o `test -f 'prTorConList.cc' || echo './'`prTorConList.cc
prClusterHist.cc: In function ‘void prClusterHist(int, int, const Real&, const int*, const int (*)[2000], const Real*, const Real (*)[2000], const Real*, int, FILE*)’:
prClusterHist.cc:51:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |     register int  Rank=0,
      |                   ^~~~
prClusterHist.cc:52:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   52 |                   j=0;
      |                   ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-pso.o `test -f 'pso.cc' || echo './'`pso.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from writePDBQT.h:34,
                 from prInitialState.cc:36:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
prInitialState.cc: In function ‘void prInitialState(const EnergyBreakdown*, int, int, const Real (*)[3], const char (*)[128], const int*, EnergyComponent*, const Real*, int, Boole, Unbound_Model, int, FILE*)’:
prInitialState.cc:59:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   59 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-qmultiply.o `test -f 'qmultiply.cc' || echo './'`qmultiply.cc
prTorConList.cc: In function ‘void prTorConList(int, const Boole*, const short unsigned int (*)[256], Real (*)[8][2], int*, int, FILE*)’:
prTorConList.cc:64:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-qtransform.o `test -f 'qtransform.cc' || echo './'`qtransform.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from pso.h:4,
                 from pso.cc:1:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-quicksort.o `test -f 'quicksort.cc' || echo './'`quicksort.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-ranlib.o `test -f 'ranlib.cc' || echo './'`ranlib.cc
In file included from qmultiply.cc:35:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qmultiply.cc:42:44: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   42 |                 register const Quat *const ql,   //left
      |                                            ^~
qmultiply.cc:43:44: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   43 |                 register const Quat *const qr )  //right
      |                                            ^~
qmultiply.cc: In function ‘void qmultiply(Quat*, const Quat*, const Quat*)’:
qmultiply.cc:66:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                     ^
qmultiply.cc:66:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                       ^
qmultiply.cc:66:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                         ^
qmultiply.cc:66:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                           ^
qmultiply.cc: In function ‘AxisAngle QuatToAxisAngle(const Quat&)’:
qmultiply.cc:224:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  224 |         register double angle = 2. * acos( input.w );
      |                         ^~~~~
qmultiply.cc: In function ‘Quat inverse(const Quat&)’:
qmultiply.cc:356:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  356 |     register Quat conj, inv;
      |                   ^~~~
qmultiply.cc:356:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  356 |     register Quat conj, inv;
      |                         ^~~
qmultiply.cc:357:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  357 |     register double inv_squared_magnitude;
      |                     ^~~~~~~~~~~~~~~~~~~~~
In file included from qtransform.h:35,
                 from qtransform.cc:32:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qtransform.cc: In function ‘void qtransform(const Coord&, const Quat&, Real (*)[3], int)’:
qtransform.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int a;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-rep.o `test -f 'rep.cc' || echo './'`rep.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-scauchy.o `test -f 'scauchy.cc' || echo './'`scauchy.cc
rep.cc: In constructor ‘IntVector::IntVector(int)’:
rep.cc:77:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   77 |    register int i;
      |                 ^
rep.cc: In constructor ‘IntVector::IntVector(int, int, int)’:
rep.cc:95:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   95 |    register int i;
      |                 ^
rep.cc: In copy constructor ‘IntVector::IntVector(const IntVector&)’:
rep.cc:129:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  129 |    for (register unsigned int i=0; i<number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& IntVector::operator=(const Representation&)’:
rep.cc:237:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  237 |    register unsigned int i;
      |                          ^
rep.cc: In constructor ‘RealVector::RealVector(int, const double&, const double&, const double&)’:
rep.cc:329:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  329 |    register int i=0;
      |                 ^
rep.cc: In copy constructor ‘RealVector::RealVector(const RealVector&)’:
rep.cc:428:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 |    for (register unsigned int i=0; i<original.number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& RealVector::operator=(const Representation&)’:
rep.cc:553:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  553 |    register unsigned int i;
      |                          ^
rep.cc: In copy constructor ‘ConstrainedRealVector::ConstrainedRealVector(const ConstrainedRealVector&)’:
rep.cc:641:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  641 |    for (register unsigned int i=0; i<original.number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘void ConstrainedRealVector::normalize()’:
rep.cc:753:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  753 |       register unsigned int i;
      |                             ^
rep.cc:754:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  754 |       register double tempsum = 0.0, hypotenuse;
      |                       ^~~~~~~
rep.cc:754:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  754 |       register double tempsum = 0.0, hypotenuse;
      |                                      ^~~~~~~~~~
rep.cc: In member function ‘virtual Representation& ConstrainedRealVector::operator=(const Representation&)’:
rep.cc:812:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  812 |    register unsigned int i;
      |                          ^
rep.cc: In copy constructor ‘BitVector::BitVector(const BitVector&)’:
rep.cc:900:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  900 |    for (register unsigned int i=0; i<number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& BitVector::operator=(const Representation&)’:
rep.cc:994:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  994 |    register unsigned int i;
      |                          ^
ranlib.cc: In function ‘ignpoi(double const&)’:
ranlib.cc:1144:21: warning: ‘m’ may be used uninitialized [-Wmaybe-uninitialized]
 1144 |     if(u > 0.458) j = IMIN(l,m);
      |                   ~~^~~~~~~~~~~
ranlib.cc:995:33: note: ‘m’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |                                 ^
ranlib.cc:1136:5: warning: ‘p’ may be used uninitialized [-Wmaybe-uninitialized]
 1136 |     if(u <= p0) return ignpoi;
      |     ^~
ranlib.cc:996:58: note: ‘p’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                          ^
ranlib.cc:1023:5: warning: ‘l’ may be used uninitialized [-Wmaybe-uninitialized]
 1023 |     if(ignpoi >= l) return ignpoi;
      |     ^~
ranlib.cc:995:31: note: ‘l’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |                               ^
ranlib.cc:1030:9: warning: ‘d’ may be used uninitialized [-Wmaybe-uninitialized]
 1030 |     if(d*u >= difmuk*difmuk*difmuk) return ignpoi;
      |        ~^~
ranlib.cc:996:26: note: ‘d’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                          ^
ranlib.cc:1017:13: warning: ‘s’ may be used uninitialized [-Wmaybe-uninitialized]
 1017 |     g = mu+s*snorm();
      |            ~^~~~~~~~
ranlib.cc:996:71: note: ‘s’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                                       ^
ranlib.cc:1092:5: warning: ‘ignpoi’ may be used uninitialized [-Wmaybe-uninitialized]
 1092 |     if(ignpoi >= 10) goto S80;
      |     ^~
ranlib.cc:995:14: note: ‘ignpoi’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |              ^~~~~~
ranlib.cc:1104:7: warning: ‘difmuk’ may be used uninitialized [-Wmaybe-uninitialized]
 1104 |     v = difmuk/fk;
      |     ~~^~~~~~~~~~~
ranlib.cc:996:32: note: ‘difmuk’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                ^~~~~~
ranlib.cc:1102:9: warning: ‘fk’ may be used uninitialized [-Wmaybe-uninitialized]
 1102 |     del = 8.333333E-2/fk;
      |     ~~~~^~~~~~~~~~~~~~~~
ranlib.cc:996:41: note: ‘fk’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                         ^~
ranlib.cc:1116:38: warning: ‘c0’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                ~~~~~~~~~~~~~~~~~~~~~~^~~~
ranlib.cc:996:14: note: ‘c0’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |              ^~
ranlib.cc:1116:31: warning: ‘c1’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                 ~~~~~~~~~~~~~~^~~~
ranlib.cc:996:17: note: ‘c1’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                 ^~
ranlib.cc:1116:24: warning: ‘c2’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                  ~~~~~~^~~~
ranlib.cc:996:20: note: ‘c2’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                    ^~
ranlib.cc:1116:21: warning: ‘c3’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                   ~~^~~
ranlib.cc:996:23: note: ‘c3’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                       ^~
ranlib.cc:1116:8: warning: ‘omega’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |     ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ranlib.cc:996:52: note: ‘omega’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                    ^~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-setflags.o `test -f 'setflags.cc' || echo './'`setflags.cc
scauchy.cc: In function ‘Real scauchy2()’:
scauchy.cc:81:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |               ^
scauchy.cc:81:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                  ^
scauchy.cc:81:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                     ^~
scauchy.cc:81:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                         ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-simanneal.o `test -f 'simanneal.cc' || echo './'`simanneal.cc
setflags.cc: In function ‘setflags(int, char const**, char const*)’:
setflags.cc:293:20: warning: ‘__strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  293 |             strncpy(logFileName, dock_param_fn, strlen(dock_param_fn)-4);
      |                    ^
setflags.cc:293:55: note: length computed here
  293 |             strncpy(logFileName, dock_param_fn, strlen(dock_param_fn)-4);
      |                                                 ~~~~~~^~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-sort_enrg.o `test -f 'sort_enrg.cc' || echo './'`sort_enrg.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-stack.o `test -f 'stack.cc' || echo './'`stack.cc
In file included from getInitialState.h:31,
                 from simanneal.h:33,
                 from simanneal.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
simanneal.cc: In function ‘void simanneal(int*, int, int*, GroupEnergy*, int, const Real&, const char (*)[128], Real*, Real*, Real*, Boole, Real (*)[3], Real (*)[3], const char*, EnergyTables*, Real*, Boole, EnergyComponent*, int, int, FourByteLong (*)[2], const clock_t&, MapType*, int, int, NonbondParam*, int, int, State, State*, const Real&, Boole, const Real&, Boole, const char*, const Real*, const Real&, Boole, const Real&, const tms&, const int (*)[2048], const Real&, Boole, const Real&, const char*, int, int, int, const Real&, Boole, const Real&, const int*, Real (*)[3], Boole, Boole, int, int, const Real&, const Real&, Boole, const Real&, Boole, const char*, Boole, short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, const Real (*)[8][2], const int*, Boole, Boole, Boole, const Real&, const Real&, int, int, const int*, Boole, const Real&, const Real&, const ParameterEntry*, const Real&, GridMapSetInfo*, Boole, Boole, const char (*)[256], Unbound_Model, int, FILE*)’:
simanneal.cc:188:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  188 |     register int i = 0;
      |                  ^
simanneal.cc:189:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  189 |     register int nacc = 0;
      |                  ^~~~
simanneal.cc:190:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  190 |     register int nAcc = 0;
      |                  ^~~~
simanneal.cc:191:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  191 |     register int nAccProb = 0;
      |                  ^~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-stop.o `test -f 'stop.cc' || echo './'`stop.cc
simanneal.cc:192:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  192 |     register int nedge = 0;
      |                  ^~~~~
simanneal.cc:193:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  193 |     register int nrej = 0;
      |                  ^~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-strindex.o `test -f 'strindex.cc' || echo './'`strindex.cc
strindex.cc: In function ‘int strindex(const char*, const char*)’:
strindex.cc:54:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                  ^
strindex.cc:54:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                    ^~
strindex.cc:54:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                       ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-success.o `test -f 'success.cc' || echo './'`success.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-support.o `test -f 'support.cc' || echo './'`support.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-swap.o `test -f 'swap.cc' || echo './'`swap.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-threadlog.o `test -f 'threadlog.cc' || echo './'`threadlog.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-timesys.o `test -f 'timesys.cc' || echo './'`timesys.cc
In file included from eval.h:38,
                 from support.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
support.cc: In copy constructor ‘Population::Population(const Population&)’:
support.cc:52:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   52 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::msort(int)’:
support.cc:147:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  147 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::print(FILE*, int) const’:
support.cc:187:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  187 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::printPopulationAsStates(FILE*, int, int) const’:
support.cc:348:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  348 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::printPopulationAsCoordsEnergies(FILE*, int, int) const’:
support.cc:388:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  388 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::set_eob(int*)’:
support.cc:433:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  433 |    for (register int i=0; i<MAX_TORS; i++) {
      |                      ^
support.cc: In constructor ‘Genotype::Genotype(unsigned int, Representation**)’:
support.cc:456:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                          ^
support.cc:456:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                             ^
support.cc:456:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                                ^
support.cc: In copy constructor ‘Genotype::Genotype(const Genotype&)’:
support.cc:484:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  484 |    register unsigned int i;
      |                          ^
support.cc: In destructor ‘Genotype::~Genotype()’:
support.cc:512:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  512 |    register unsigned int i;
      |                          ^
support.cc: In constructor ‘Phenotype::Phenotype(unsigned int, Representation**, Eval*)’:
support.cc:674:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                          ^
support.cc:674:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                             ^
support.cc:674:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                                ^
support.cc: In copy constructor ‘Phenotype::Phenotype(const Phenotype&)’:
support.cc:700:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  700 |    register unsigned int i;
      |                          ^
support.cc: In member function ‘Phenotype& Phenotype::operator=(const Phenotype&)’:
support.cc:731:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  731 |    register unsigned int i;
      |                          ^
support.cc: In destructor ‘Phenotype::~Phenotype()’:
support.cc:781:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  781 |    register unsigned int i;
      |                          ^
support.cc: In member function ‘Population& Population::operator=(const Population&)’:
support.cc:968:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  968 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-timesyshms.o `test -f 'timesyshms.cc' || echo './'`timesyshms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-torNorVec.o `test -f 'torNorVec.cc' || echo './'`torNorVec.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-torsion.o `test -f 'torsion.cc' || echo './'`torsion.cc
torNorVec.cc: In function ‘void torNorVec(const Real (*)[3], int, const int (*)[2048], Real (*)[3], int, FILE*)’:
torNorVec.cc:47:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   47 |     register int xyz = 0;
      |                  ^~~
torNorVec.cc:48:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int j = 0;
      |                  ^
torNorVec.cc: In function ‘void update_torsion_vectors(const Real (*)[3], int, const int (*)[2048], Real (*)[3], Molecule*, int, int, FILE*)’:
torNorVec.cc:104:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  104 |     register int i=0, j=0;
      |                  ^
torNorVec.cc:104:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  104 |     register int i=0, j=0;
      |                       ^
torsion.cc: In function ‘void torsion(const State&, Real (*)[3], const Real (*)[3], const int (*)[2048], int)’:
torsion.cc:62:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |     register double crdtemp[SPACE];
      |                     ^~~~~~~
torsion.cc:63:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   63 |     register double  d[SPACE];
      |                      ^
torsion.cc:64:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register double sv[SPACE];
      |                     ^~
torsion.cc:65:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register double ov[SPACE];
      |                     ^~
torsion.cc:66:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double  k[SPACE][SPACE];
      |                      ^
torsion.cc:67:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                     ^
torsion.cc:67:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                        ^
torsion.cc:67:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                           ^
torsion.cc:67:30: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                              ^~~
torsion.cc:67:35: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                                   ^~~~~~~~
torsion.cc:68:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                  ^
torsion.cc:68:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                     ^
torsion.cc:68:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                        ^~~~~
torsion.cc:68:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                               ^~~~~~
torsion.cc:68:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                                       ^~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-trilinterp.o `test -f 'trilinterp.cc' || echo './'`trilinterp.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-usage.o `test -f 'usage.cc' || echo './'`usage.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-weedbonds.o `test -f 'weedbonds.cc' || echo './'`weedbonds.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-warn_bad_file.o `test -f 'warn_bad_file.cc' || echo './'`warn_bad_file.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-coliny.o `test -f 'coliny.cc' || echo './'`coliny.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-eintcal.o `test -f 'eintcal.cc' || echo './'`eintcal.cc
trilinterp.cc: In function ‘Real trilinterp(int, int, const Real (*)[3], const Real*, const Real*, const int*, MapType*, const GridMapSetInfo*, const int*, EnergyComponent*, EnergyComponent*, EnergyComponent*)’:
trilinterp.cc:88:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |     register int i;               /* i-th atom */
      |                  ^
trilinterp.cc:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                         ^
trilinterp.cc:92:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                            ^
trilinterp.cc:92:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                               ^
trilinterp.cc:93:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                         ^
trilinterp.cc:93:30: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                              ^
trilinterp.cc:93:35: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                                   ^
trilinterp.cc:96:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   96 |         register int AtomType;        /* atom type */
      |                      ^~~~~~~~
trilinterp.cc:97:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                      ^~
trilinterp.cc:97:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                           ^~
trilinterp.cc:97:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                                ^~
trilinterp.cc:98:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                      ^~
trilinterp.cc:98:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                           ^~
trilinterp.cc:98:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                                ^~
trilinterp.cc:99:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                         ^
trilinterp.cc:99:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                           ^
trilinterp.cc:99:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                             ^
trilinterp.cc:98:22: warning: variable ‘u1’ set but not used [-Wunused-but-set-variable=]
   98 |         register int u1,  v1,  w1;
      |                      ^~
trilinterp.cc:98:27: warning: variable ‘v1’ set but not used [-Wunused-but-set-variable=]
   98 |         register int u1,  v1,  w1;
      |                           ^~
trilinterp.cc:98:32: warning: variable ‘w1’ set but not used [-Wunused-but-set-variable=]
   98 |         register int u1,  v1,  w1;
      |                                ^~
weedbonds.cc: In function ‘void weedbonds(int, const char (*)[5], const int*, int, const int (*)[2048], int (*)[2048], int*, NonbondParam*, int*, int, const int*, int, int, FILE*)’:
weedbonds.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int i = 0;
      |                  ^
weedbonds.cc:66:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register int j = 0;
      |                  ^
weedbonds.cc:67:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register int k = 0;
      |                  ^
weedbonds.cc: In function ‘void print_nonbonds(int, const char (*)[5], const int*, int, const int (*)[2048], int (*)[2048], int, const NonbondParam*, const int*, int, FILE*)’:
weedbonds.cc:252:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  252 |     register int i = 0;
      |                  ^
weedbonds.cc:253:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  253 |     register int j = 0;
      |                  ^
weedbonds.cc:254:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  254 |     register int k = 0;
      |                  ^
eintcal.cc: In function ‘Real eintcal(const NonbondParam*, const EnergyTables*, const Real (*)[3], int, int*, GroupEnergy*, Boole, Boole, const Real&, const Real*, Boole, Boole, int, FILE*)’:
eintcal.cc:206:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  206 |             register double r2;
      |                             ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-eintcalPrint.o `test -f 'eintcalPrint.cc' || echo './'`eintcalPrint.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-intnbtable.o `test -f 'intnbtable.cc' || echo './'`intnbtable.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autodock4_omp-nbe.o `test -f 'nbe.cc' || echo './'`nbe.cc
g++ -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer     -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o autodock4 autodock4-main.o autodock4-alea.o autodock4-analysis.o autodock4-atom_parameter_manager.o autodock4-banner.o autodock4-bestpdb.o autodock4-calculateEnergies.o autodock4-call_glss.o autodock4-call_ls.o autodock4-center_ligand.o autodock4-changeState.o autodock4-check_header_float.o autodock4-check_header_int.o autodock4-check_header_line.o autodock4-cluster_analysis.o autodock4-clmode.o autodock4-cnv_state_to_coords.o autodock4-com.o autodock4-conformation_sampler.o autodock4-dimLibrary.o autodock4-distdepdiel.o autodock4-stateLibrary.o autodock4-readfield.o autodock4-readmap.o autodock4-readPDBQT.o autodock4-read_parameter_library.o autodock4-eval.o autodock4-gencau.o autodock4-getrms.o autodock4-get_atom_type.o autodock4-getInitialState.o autodock4-getpdbcrds.o autodock4-gs.o autodock4-initautodock.o autodock4-input_state.o autodock4-investigate.o autodock4-linpack.o autodock4-ls.o autodock4-mapping.o autodock4-mingw_getrusage.o autodock4-minmeanmax.o autodock4-mkNewState.o autodock4-mkTorTree.o autodock4-mkRandomState.o autodock4-nonbonds.o autodock4-openfile.o autodock4-output_state.o autodock4-parse_dpf_line.o autodock4-parse_param_line.o autodock4-parse_PDBQT_line.o autodock4-parse_trj_line.o autodock4-parsetypes.o autodock4-print_2x.o autodock4-print_atomic_energies.o autodock4-print_avsfld.o autodock4-writePDBQT.o autodock4-print_rem.o autodock4-printdate.o autodock4-printEnergies.o autodock4-printhms.o autodock4-prClusterHist.o autodock4-prInitialState.o autodock4-prTorConList.o autodock4-pso.o autodock4-qmultiply.o autodock4-qtransform.o autodock4-quicksort.o autodock4-ranlib.o autodock4-rep.o autodock4-scauchy.o autodock4-setflags.o autodock4-simanneal.o autodock4-sort_enrg.o autodock4-stack.o autodock4-stop.o autodock4-strindex.o autodock4-success.o autodock4-support.o autodock4-swap.o autodock4-threadlog.o autodock4-timesys.o autodock4-timesyshms.o autodock4-torNorVec.o autodock4-torsion.o autodock4-trilinterp.o autodock4-usage.o autodock4-weedbonds.o autodock4-warn_bad_file.o autodock4-coliny.o autodock4-eintcal.o autodock4-eintcalPrint.o autodock4-intnbtable.o autodock4-nbe.o  -lm 
In file included from eintcalPrint.cc:29:
./eintcal.cc: In function ‘Real eintcalPrint(const NonbondParam*, const EnergyTables*, const Real (*)[3], int, int*, GroupEnergy*, Boole, Boole, const Real&, const Real*, Boole, Boole, int, const int*, const char (*)[3], int, FILE*)’:
./eintcal.cc:206:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  206 |             register double r2;
      |                             ^~
./eintcal.cc:130:12: warning: variable ‘total_e_vdW_Hb’ set but not used [-Wunused-but-set-variable=]
  130 |     double total_e_vdW_Hb=0.0L;
      |            ^~~~~~~~~~~~~~
intnbtable.cc: In function ‘void intnbtable(Boole*, int, int, const GridMapSetInfo*, const Real&, const Real&, int, int, Boole, const Real&, Linear_FE_Model, const double&, EnergyTables*, Boole, FILE*, int)’:
intnbtable.cc:83:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   83 |     register int i;
      |                  ^
intnbtable.cc: In function ‘void setup_distdepdiel(FILE*, int, EnergyTables*)’:
intnbtable.cc:268:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  268 |     register int i=0;
      |                  ^
intnbtable.cc:269:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  269 |     register double distance=0.0L;
      |                     ^~~~~~~~
nbe.cc: In function ‘void nbe(const GridMapSetInfo*, const EnergyTables*, int, int, FILE*)’:
nbe.cc:64:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register int i = 0;
      |                  ^
nbe.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int j = 0;
      |                  ^
nbe.cc:66:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register int k = 0;
      |                  ^
g++ -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -fopenmp  -fopenmp -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o autodock4.omp autodock4_omp-main.o autodock4_omp-alea.o autodock4_omp-analysis.o autodock4_omp-atom_parameter_manager.o autodock4_omp-banner.o autodock4_omp-bestpdb.o autodock4_omp-calculateEnergies.o autodock4_omp-call_glss.o autodock4_omp-call_ls.o autodock4_omp-center_ligand.o autodock4_omp-changeState.o autodock4_omp-check_header_float.o autodock4_omp-check_header_int.o autodock4_omp-check_header_line.o autodock4_omp-cluster_analysis.o autodock4_omp-clmode.o autodock4_omp-cnv_state_to_coords.o autodock4_omp-com.o autodock4_omp-conformation_sampler.o autodock4_omp-dimLibrary.o autodock4_omp-distdepdiel.o autodock4_omp-stateLibrary.o autodock4_omp-readfield.o autodock4_omp-readmap.o autodock4_omp-readPDBQT.o autodock4_omp-read_parameter_library.o autodock4_omp-eval.o autodock4_omp-gencau.o autodock4_omp-getrms.o autodock4_omp-get_atom_type.o autodock4_omp-getInitialState.o autodock4_omp-getpdbcrds.o autodock4_omp-gs.o autodock4_omp-initautodock.o autodock4_omp-input_state.o autodock4_omp-investigate.o autodock4_omp-linpack.o autodock4_omp-ls.o autodock4_omp-mapping.o autodock4_omp-mingw_getrusage.o autodock4_omp-minmeanmax.o autodock4_omp-mkNewState.o autodock4_omp-mkTorTree.o autodock4_omp-mkRandomState.o autodock4_omp-nonbonds.o autodock4_omp-openfile.o autodock4_omp-output_state.o autodock4_omp-parse_dpf_line.o autodock4_omp-parse_param_line.o autodock4_omp-parse_PDBQT_line.o autodock4_omp-parse_trj_line.o autodock4_omp-parsetypes.o autodock4_omp-print_2x.o autodock4_omp-print_atomic_energies.o autodock4_omp-print_avsfld.o autodock4_omp-writePDBQT.o autodock4_omp-print_rem.o autodock4_omp-printdate.o autodock4_omp-printEnergies.o autodock4_omp-printhms.o autodock4_omp-prClusterHist.o autodock4_omp-prInitialState.o autodock4_omp-prTorConList.o autodock4_omp-pso.o autodock4_omp-qmultiply.o autodock4_omp-qtransform.o autodock4_omp-quicksort.o autodock4_omp-ranlib.o autodock4_omp-rep.o autodock4_omp-scauchy.o autodock4_omp-setflags.o autodock4_omp-simanneal.o autodock4_omp-sort_enrg.o autodock4_omp-stack.o autodock4_omp-stop.o autodock4_omp-strindex.o autodock4_omp-success.o autodock4_omp-support.o autodock4_omp-swap.o autodock4_omp-threadlog.o autodock4_omp-timesys.o autodock4_omp-timesyshms.o autodock4_omp-torNorVec.o autodock4_omp-torsion.o autodock4_omp-trilinterp.o autodock4_omp-usage.o autodock4_omp-weedbonds.o autodock4_omp-warn_bad_file.o autodock4_omp-coliny.o autodock4_omp-eintcal.o autodock4_omp-eintcalPrint.o autodock4_omp-intnbtable.o autodock4_omp-nbe.o  -lm 
/usr/bin/ld: /tmp/ccHXTYiI.ltrans3.ltrans.o: in function `threadLogOpen(int)':
/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock/threadlog.cc:48:(.text+0x902a): warning: the use of `tempnam' is dangerous, better use `mkstemp'
make[1]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
+ popd
~/build/BUILD/autodocksuite-4.2.6-build/src
~/build/BUILD/autodocksuite-4.2.6-build/src/autogrid ~/build/BUILD/autodocksuite-4.2.6-build/src
+ pushd /builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2014-07-19 01:59:01.000000000 +0000
+++ ./configure	2025-12-25 09:26:50.762019542 +0000
@@ -1868,7 +1868,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
+ ./configure --build=x86_64-redhat-linux --host=x86_64-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/bin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... none
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking for x86_64-redhat-linux-gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... none
checking for sqrt in -lm... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... no
checking for _Bool... yes
checking for an ANSI C-conforming const... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for gethostname... yes
checking for getpid... yes
checking for GetProcessId... no
checking for fchmod... yes
checking for setlinebuf... yes
checking for sysconf... yes
checking for times... yes
checking for getrusage... yes
checking for pow... yes
checking for sqrt... yes
checking for strncasecmp... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
+ make V=1 -j4
rm -f default_parameters.h
csh ./../autodock/paramdat2h.csh ./../autodock/AD4_parameters.dat  ./../autodock/AD4.1_bound.dat > default_parameters.h
sh ./copyfilesfromAD
make  all-am
make[1]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-main.o `test -f 'main.cpp' || echo './'`main.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-check_size.o `test -f 'check_size.cpp' || echo './'`check_size.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-setflags.o `test -f 'setflags.cpp' || echo './'`setflags.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-timesys.o `test -f 'timesys.cpp' || echo './'`timesys.cpp
main.cpp: In function ‘int main(int, char**)’:
main.cpp:427:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |              ^
main.cpp:427:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                     ^~
main.cpp:427:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                             ^
main.cpp:427:36: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                                    ^
main.cpp:427:43: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                                           ^~~~~~
main.cpp:427:55: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                                                       ^~~~~~~~
main.cpp:428:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |              ^~
main.cpp:428:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                      ^~
main.cpp:428:30: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                              ^~
main.cpp:428:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                      ^~~~~~~~~
main.cpp:428:54: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                                      ^~~
main.cpp:428:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                                               ^~
main.cpp:428:71: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                                                       ^~
main.cpp:428:79: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                                                               ^~
main.cpp:429:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  429 | register int closestH = 0;
      |              ^~~~~~~~
main.cpp:214:5: warning: variable ‘parameter_library_found’ set but not used [-Wunused-but-set-variable=]
  214 | int parameter_library_found = 0;
      |     ^~~~~~~~~~~~~~~~~~~~~~~
main.cpp:263:8: warning: variable ‘maptypeptr’ set but not used [-Wunused-but-set-variable=]
  263 | char * maptypeptr; /*ptr for current map->type*/
      |        ^~~~~~~~~~
main.cpp:301:44: warning: variable ‘nitrogen’ set but not used [-Wunused-but-set-variable=]
  301 | int hydrogen, carbon, arom_carbon, oxygen, nitrogen;
      |                                            ^~~~~~~~
main.cpp:302:21: warning: variable ‘nonHB_nitrogen’ set but not used [-Wunused-but-set-variable=]
  302 | int nonHB_hydrogen, nonHB_nitrogen, sulphur, nonHB_sulphur;
      |                     ^~~~~~~~~~~~~~
main.cpp:302:46: warning: variable ‘nonHB_sulphur’ set but not used [-Wunused-but-set-variable=]
  302 | int nonHB_hydrogen, nonHB_nitrogen, sulphur, nonHB_sulphur;
      |                                              ^~~~~~~~~~~~~
main.cpp:305:5: warning: variable ‘chlorine’ set but not used [-Wunused-but-set-variable=]
  305 | int chlorine, bromine, fluorine, iodine;
      |     ^~~~~~~~
main.cpp:305:15: warning: variable ‘bromine’ set but not used [-Wunused-but-set-variable=]
  305 | int chlorine, bromine, fluorine, iodine;
      |               ^~~~~~~
main.cpp:305:24: warning: variable ‘fluorine’ set but not used [-Wunused-but-set-variable=]
  305 | int chlorine, bromine, fluorine, iodine;
      |                        ^~~~~~~~
main.cpp:305:34: warning: variable ‘iodine’ set but not used [-Wunused-but-set-variable=]
  305 | int chlorine, bromine, fluorine, iodine;
      |                                  ^~~~~~
main.cpp:307:5: warning: variable ‘map_hydrogen’ set but not used [-Wunused-but-set-variable=]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |     ^~~~~~~~~~~~
main.cpp:307:19: warning: variable ‘map_carbon’ set but not used [-Wunused-but-set-variable=]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |                   ^~~~~~~~~~
main.cpp:307:31: warning: variable ‘map_arom_carbon’ set but not used [-Wunused-but-set-variable=]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |                               ^~~~~~~~~~~~~~~
main.cpp:307:48: warning: variable ‘map_oxygen’ set but not used [-Wunused-but-set-variable=]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |                                                ^~~~~~~~~~
main.cpp:307:60: warning: variable ‘map_nitrogen’ set but not used [-Wunused-but-set-variable=]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |                                                            ^~~~~~~~~~~~
main.cpp:308:5: warning: variable ‘map_nonHB_hydrogen’ set but not used [-Wunused-but-set-variable=]
  308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur;
      |     ^~~~~~~~~~~~~~~~~~
main.cpp:308:25: warning: variable ‘map_nonHB_nitrogen’ set but not used [-Wunused-but-set-variable=]
  308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur;
      |                         ^~~~~~~~~~~~~~~~~~
main.cpp:308:45: warning: variable ‘map_sulphur’ set but not used [-Wunused-but-set-variable=]
  308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur;
      |                                             ^~~~~~~~~~~
main.cpp:308:58: warning: variable ‘map_nonHB_sulphur’ set but not used [-Wunused-but-set-variable=]
  308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur;
      |                                                          ^~~~~~~~~~~~~~~~~
main.cpp:309:5: warning: variable ‘map_chlorine’ set but not used [-Wunused-but-set-variable=]
  309 | int map_chlorine, map_bromine, map_fluorine, map_iodine;
      |     ^~~~~~~~~~~~
main.cpp:309:19: warning: variable ‘map_bromine’ set but not used [-Wunused-but-set-variable=]
  309 | int map_chlorine, map_bromine, map_fluorine, map_iodine;
      |                   ^~~~~~~~~~~
main.cpp:309:32: warning: variable ‘map_fluorine’ set but not used [-Wunused-but-set-variable=]
  309 | int map_chlorine, map_bromine, map_fluorine, map_iodine;
      |                                ^~~~~~~~~~~~
main.cpp:309:46: warning: variable ‘map_iodine’ set but not used [-Wunused-but-set-variable=]
  309 | int map_chlorine, map_bromine, map_fluorine, map_iodine;
      |                                              ^~~~~~~~~~
main.cpp:347:5: warning: variable ‘ctr’ set but not used [-Wunused-but-set-variable=]
  347 | int ctr;
      |     ^~~
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-timesyshms.o `test -f 'timesyshms.cpp' || echo './'`timesyshms.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-printhms.o `test -f 'printhms.cpp' || echo './'`printhms.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-prHMSfixed.o `test -f 'prHMSfixed.cpp' || echo './'`prHMSfixed.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-printdate.o `test -f 'printdate.cpp' || echo './'`printdate.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-strindex.o `test -f 'strindex.cpp' || echo './'`strindex.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-banner.o `test -f 'banner.cpp' || echo './'`banner.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-gpfparser.o `test -f 'gpfparser.cpp' || echo './'`gpfparser.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-parsetypes.o `test -f 'parsetypes.cpp' || echo './'`parsetypes.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-atom_parameter_manager.o `test -f 'atom_parameter_manager.cpp' || echo './'`atom_parameter_manager.cpp
main.cpp:110:49: warning: ‘%s’ directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=]
  110 |     (void) sprintf( output_message, "\n%s: %s:  %s\n", programname, tag, message);
      |                                                 ^~
......
  779 |                     print_error( logFile, SUGGESTION, message );
      |                                                       ~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from main.cpp:40:
In function ‘sprintf’,
    inlined from ‘print_error(_IO_FILE*, int, char*)’ at main.cpp:110:19,
    inlined from ‘main’ at main.cpp:779:32:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 18 or more bytes (assuming 273) into a destination of size 256
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
main.cpp: In function ‘main’:
main.cpp:1446:46: warning: ‘cA’ may be used uninitialized [-Wmaybe-uninitialized]
 1446 |                 gridmap[ligtype].cA[rectype] = cA;
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
main.cpp:388:8: note: ‘cA’ was declared here
  388 | double cA, cB, tmpconst;
      |        ^~
main.cpp:1447:46: warning: ‘cB’ may be used uninitialized [-Wmaybe-uninitialized]
 1447 |                 gridmap[ligtype].cB[rectype] = cB;
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
main.cpp:388:12: note: ‘cB’ was declared here
  388 | double cA, cB, tmpconst;
      |            ^~
parsetypes.cpp: In function ‘int parsetypes(char*, char**, int)’:
parsetypes.cpp:58:9: warning: variable ‘index’ set but not used [-Wunused-but-set-variable=]
   58 |     int index = 0;
      |         ^~~~~
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-read_parameter_library.o `test -f 'read_parameter_library.cpp' || echo './'`read_parameter_library.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-parse_param_line.o `test -f 'parse_param_line.cpp' || echo './'`parse_param_line.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-distdepdiel.o `test -f 'distdepdiel.cpp' || echo './'`distdepdiel.cpp
read_parameter_library.cpp: In function ‘void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)’:
read_parameter_library.cpp:207:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  207 |     register int counter = 0;
      |                  ^~~~~~~
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-mingw_getrusage.o `test -f 'mingw_getrusage.cpp' || echo './'`mingw_getrusage.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-calc_vina_potential.o `test -f 'calc_vina_potential.cpp' || echo './'`calc_vina_potential.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o autogrid4-stop.o `test -f 'stop.cpp' || echo './'`stop.cpp
calc_vina_potential.cpp: In function ‘int calc_vina_potential(int, const char (*)[3], int, const char (*)[3], EnergyTables*)’:
calc_vina_potential.cpp:110:9: warning: variable ‘hydrogen’ set but not used [-Wunused-but-set-variable=]
  110 |     int hydrogen=-1;
      |         ^~~~~~~~
calc_vina_potential.cpp:113:9: warning: variable ‘oxygen’ set but not used [-Wunused-but-set-variable=]
  113 |     int oxygen=-1;
      |         ^~~~~~
calc_vina_potential.cpp:114:9: warning: variable ‘nitrogen’ set but not used [-Wunused-but-set-variable=]
  114 |     int nitrogen=-1;
      |         ^~~~~~~~
calc_vina_potential.cpp:115:9: warning: variable ‘fluorine’ set but not used [-Wunused-but-set-variable=]
  115 |     int fluorine=-1;
      |         ^~~~~~~~
calc_vina_potential.cpp:116:9: warning: variable ‘chlorine’ set but not used [-Wunused-but-set-variable=]
  116 |     int chlorine=-1;
      |         ^~~~~~~~
calc_vina_potential.cpp:117:9: warning: variable ‘bromine’ set but not used [-Wunused-but-set-variable=]
  117 |     int bromine=-1;
      |         ^~~~~~~
calc_vina_potential.cpp:118:9: warning: variable ‘iodine’ set but not used [-Wunused-but-set-variable=]
  118 |     int iodine=-1;
      |         ^~~~~~
calc_vina_potential.cpp:283:56: warning: array subscript 16384 is above array bounds of ‘Real[14][14]’ [-Warray-bounds=]
  283 |      printf("last value=%f\n", p_et->e_vdW_Hb[i][indx_r][ia]);
      |                                ~~~~~~~~~~~~~~~~~~~~~~~~^
In file included from atom_parameter_manager.h:30,
                 from calc_vina_potential.cpp:26:
./../autodock/structs.h:260:10: note: while referencing ‘e_vdW_Hb’
  260 |     Real e_vdW_Hb[NEINT][MAX_ATOM_TYPES][MAX_ATOM_TYPES];  // vdW & Hb energies
      |          ^~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from ./../autodock/autocomm.h:35,
                 from autogrid.h:27,
                 from calc_vina_potential.cpp:25:
In function ‘printf’,
    inlined from ‘calc_vina_potential(int, char const (*) [3], int, char const (*) [3], energy_tables*)’ at calc_vina_potential.cpp:284:12:
/usr/include/bits/stdio2.h:118:23: warning: ‘rddist’ may be used uninitialized [-Wmaybe-uninitialized]
  118 |   return __printf_chk (__USE_FORTIFY_LEVEL - 1, __fmt, __va_arg_pack ());
      |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
calc_vina_potential.cpp: In function ‘calc_vina_potential(int, char const (*) [3], int, char const (*) [3], energy_tables*)’:
calc_vina_potential.cpp:57:12: note: ‘rddist’ was declared here
   57 |     double rddist;
      |            ^~~~~~
calc_vina_potential.cpp:283:12: warning: ‘i’ may be used uninitialized [-Wmaybe-uninitialized]
  283 |      printf("last value=%f\n", p_et->e_vdW_Hb[i][indx_r][ia]);
      |      ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
calc_vina_potential.cpp:60:13: note: ‘i’ was declared here
   60 |     int ia, i,   indx_r;
      |             ^
g++  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o autogrid4 autogrid4-main.o autogrid4-check_size.o autogrid4-setflags.o autogrid4-timesys.o autogrid4-timesyshms.o autogrid4-printhms.o autogrid4-prHMSfixed.o autogrid4-printdate.o autogrid4-strindex.o autogrid4-banner.o autogrid4-gpfparser.o autogrid4-parsetypes.o autogrid4-atom_parameter_manager.o autogrid4-read_parameter_library.o autogrid4-parse_param_line.o autogrid4-distdepdiel.o autogrid4-mingw_getrusage.o autogrid4-calc_vina_potential.o autogrid4-stop.o  -lm 
make[1]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.ceqaYV
+ umask 022
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ '[' /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
++ dirname /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/autodocksuite-4.2.6-build
+ mkdir /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd src
+ make -C autodock install DESTDIR=/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
make: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
make  install-am
make[1]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
make[2]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
 /usr/bin/mkdir -p '/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/bin'
  /usr/bin/install -c autodock4 autodock4.omp '/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
make[1]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
make: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
+ make -C autogrid install DESTDIR=/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
make: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
make  install-am
make[1]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
make[2]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
 /usr/bin/mkdir -p '/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/bin'
  /usr/bin/install -c autogrid4 '/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
make[1]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
make: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
+ rm -f /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT//usr/bin/autodock4.omp
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 4.2.6-25.fc44 --unique-debug-suffix -4.2.6-25.fc44.x86_64 --unique-debug-src-base autodocksuite-4.2.6-25.fc44.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/autodocksuite-4.2.6-build/src
find-debuginfo: starting
Extracting debug info from 2 files
DWARF-compressing 2 files
sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/autodocksuite-4.2.6-25.fc44.x86_64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ COMPRESS='gzip -9 -n'
+ COMPRESS_EXT=.gz
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-det --brp -j4 /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
Scanned 13 directories and 218 files,
    processed 0 inodes,
    0 modified (0 replaced + 0 rewritten),
    0 unsupported format, 0 errors
+ /usr/bin/linkdupes --brp /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr
Scanned 12 directories and 218 files,
    considered 218 files, read 28 files, linked 14 files, 0 errors
    sum of sizes of linked files: 45784 bytes
Reading /builddir/build/BUILD/autodocksuite-4.2.6-build/SPECPARTS/rpm-debuginfo.specpart
Processing files: autodocksuite-4.2.6-25.fc44.x86_64
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.nF3XrN
+ umask 022
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ cd src
+ LICENSEDIR=/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/share/licenses/autodocksuite
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/share/licenses/autodocksuite
+ cp -pr /builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock/COPYING /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/share/licenses/autodocksuite
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: autodocksuite = 4.2.6-25.fc44 autodocksuite(x86-64) = 4.2.6-25.fc44
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) rtld(GNU_HASH)
Processing files: autodocksuite-debugsource-4.2.6-25.fc44.x86_64
Provides: autodocksuite-debugsource = 4.2.6-25.fc44 autodocksuite-debugsource(x86-64) = 4.2.6-25.fc44
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: autodocksuite-debuginfo-4.2.6-25.fc44.x86_64
Provides: autodocksuite-debuginfo = 4.2.6-25.fc44 autodocksuite-debuginfo(x86-64) = 4.2.6-25.fc44 debuginfo(build-id) = 7db1afa8c9a43e4c175248bfbfab231e32eed011 debuginfo(build-id) = e3d1b853753d93a7c2be3c5b6cca8a449511fb6f
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: autodocksuite-debugsource(x86-64) = 4.2.6-25.fc44
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
Wrote: /builddir/build/RPMS/autodocksuite-4.2.6-25.fc44.x86_64.rpm
Wrote: /builddir/build/RPMS/autodocksuite-debuginfo-4.2.6-25.fc44.x86_64.rpm
Wrote: /builddir/build/RPMS/autodocksuite-debugsource-4.2.6-25.fc44.x86_64.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.qYK7lQ
+ umask 022
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ test -d /builddir/build/BUILD/autodocksuite-4.2.6-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/autodocksuite-4.2.6-build
+ rm -rf /builddir/build/BUILD/autodocksuite-4.2.6-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild autodocksuite-4.2.6-25.fc44.src.rpm
Finish: build phase for autodocksuite-4.2.6-25.fc44.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1766654750.620361/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/autodocksuite-4.2.6-25.fc44.src.rpm) Config(child) 0 minutes 41 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "autodocksuite",
            "epoch": null,
            "version": "4.2.6",
            "release": "25.fc44",
            "arch": "x86_64"
        },
        {
            "name": "autodocksuite-debuginfo",
            "epoch": null,
            "version": "4.2.6",
            "release": "25.fc44",
            "arch": "x86_64"
        },
        {
            "name": "autodocksuite",
            "epoch": null,
            "version": "4.2.6",
            "release": "25.fc44",
            "arch": "src"
        },
        {
            "name": "autodocksuite-debugsource",
            "epoch": null,
            "version": "4.2.6",
            "release": "25.fc44",
            "arch": "x86_64"
        }
    ]
}
RPMResults finished